lowQualScore : 11 1
lowQualScore : 1 1 66 222 9 33 777777 22 1 1 9999 11 999 44 333333 11 333 666666666 1 1 1 2222 2222 1 2 5 444 1 11 11 0
lowQualScore : . . .. ... . .. ...... .. . . .... .. ... .. ...... .. ... ......... . . . .... .... . . . ... . .. .. .
lowQualScore : 5 5 33 777 2 55 222222 00 5 5 6666 99 666 00 888888 88 555 555555555 9 3 3 7777 7777 5 0 5 000 3 44 88 4
consensus : ATAGTT-C-G--CTT---CAGTG--AGCG------T--G-CG-A-N-ATTTTCAT--A--NCACGATTACCAT------AT--T---ACT---------CATCGA-TTGGCC-G----T----TTGATTTCAATGA-AATGAA-CACTG-TTT--TGCATATCAA
Reference ( gi|73937 ) : ATAGTT-C-G--CTT---CATTG--AGCG------T--G-CA-A-T-GTTTTCAT--A--ACATTATTACCAT------AT--T---ACT---------CACCGA-TTGGCC-G----T----TTGGTCTCAGTAG-AATGAA-TACTG-TTT--TGCATAACAA
gi|73938 : ATAGTT-C-G--CTT---CATTG--AGCG------T--G-CA-A-T-GTTTTCAT--A--ACATTATTACCAT------AT--T---ACTC--------CACCGA-TTGGCC-G----T----TTGGTCTCAGTAG-AATGAA-TACTG-TTT--TGCATAACAA
gi|73932 : ATAGTT-C-G--CTT---CAGTG--ATCA------T--G-CA-A-T-GTTTTCAT--A--GCATGACTACCAT------AT--T---ACT---------TACCGA-TTGGCC-G----T----TTGGTCTCAATAA-ATTGAA-TATTG-TTT--TGAATATCAA
gi|73947 : ATAGTT-C-G--CTT---CAGTG--AGCG------T--G-CA-A-T-GTATTCAT--A--ACATTA----------------------CT---------CACCGA-CTGGCC-A----G----TTGGTCTCAATAG-AATGAA-TACTG-TTT--TGCATAACAA
gi|73949 : ATAGTT-C-G--CTT---CAGTG--AGCG------T--G-CA-A-T-GTTTTCAT--A--AC-----------------AT--T---ACT---------CACCGAGCTGGCCAG----T----T--GTCTCAATAG-AATGAA-TACTG-TTT--TGCATAACAA
gi|73948 : ATAGTT-C-G--CTT---TAGTG--AGCG------T--G-CA-A-T-GTTTTCAT--A--ACATTATT-------------------------------CACCGA-CTGACC-A----T----TTAGTCTCAATAG-AATGAA-TGCTA-TTT--TGCATAACAA
gi|73944 : ATAGT--C-GACCTT---TGT-G--AGCG------T--G-CG-A-G-ATTTTCAT--A--CCATGATCATCAT------AT--TT--ACT---------CATCGA-TTGGCC-G----T----CTGGTCTCGATAA-AATGAA-TACTG-CTT--TACATATCAA
gi|73934 : ATAGTT-C-G--CTT---CAGTA--AGCA------T--G-CC-A-G-ATTTTCAC--A--TCACGATTACCAT------AT--T---ACT---------CATCGG-TTGGCT-G----T----TTGATTTCAATGA-AATGAA-TAC---TTT--TGCTTATCAA
gi|73931 : ATAGTT-T-G--CTT---CAGTA--AGCA------T--G-CC-A-G-ATTTTCAC--A--TCACGATTACCAT------AT--T---TAT---------CATCGA-TTGGCT-G----T----TTGATTTCAATGA-AATGAA-CACTA-TTT--TGCATATCA
gi|73936 : ATAGTT-C-G--CTT---CAGTA--AGCA------T--G-CC-A-T--TTTTCAC--A--TCACGATTACCAT------AT--T---ACT---------CATCGA-TTGGCT-G----T----CTGATTTCAATGA-ACTGAA-CACTT-TCTTATGAATAACAA
gi|73933 : ATAGTT-C-G--CTT---CAGTA--AGCA------T--GTCAGA-T-TTTCTCTT------CACGATTACCAT------AT--T---ATT---------CATCGA-TTGGTT-G----T----TTGATTTCAATGA-AATGAA-CACTA-TTT--TGCATATCAA
gi|73935 : ATAGTT-C-G--CTT---CCGTA--AGCAAAACAAT--G--A-A-T-GTTTTCAT--A--ACATGACTACCAT------AT--T---ACT---------AACCGA-TTAGTC-G----T----T---------TAA-AATGAA-TACTG-TTT--TGCATATCAA
gi|73941 : ATAGTT-G-A--CCT-----TTGTCAGTG------T--G-TG-A-G-ATTATCAC--A--CCATGATCACCAT------AT--T---ACTGTACCTACTCATCGA-TTGGCC-G----T----TTGGTCTCAATAA-AATGAA-TACTG-CTT--TACATATCAA
gi|73953 : ACAGTT-C-G--CTA---AAACG--AATT------T--G-CA-A-T-ATTTTCAT--T--CCAGTATTGTCAT------TT--T---ACT---------CATCGA-ATGGCC-G----T----TTGCTATCACTAG-AATAAC-TGTTG-TTT--TGAATATCAA
gi|73939 : ACAGTT-C-G--CTT---CAGTG--AGCA------T--G-CA-A-A-ATTTTCAT--G---CATGGTCATCGT------AT--T---ATC---------TATTGA-TTGGCG-G----T----TTGATTTCAATGA-AATGAA-CTTTA-TTT--TG
gi|73940 : ATAGTT---GACCTT---CGT-G--AGAG------T--G-CA-A-A-GTTTTCAT--G--CAATGATTACCGT------GT--T---ACC---------CATCGA-TTGGTG-G----T----TTAATTTCAATGA-AATGAA-CTCTG--TT--TGTATATCAAt
gi|73942 : ACAGTT-C-G--CAT---CACTG--AGCA------TTTG-AA-A-T--TTTTCATGCA--ACG--GTTACTGT------AT--T---ACC---------CATCAA-TTGGCG-G----T----TTGATTTCAATGA-AATTAA-TTCCA-TTT--TGTATATCAA
gi|73950 : ATAGTT---GACCTT---TAT-G--AGTG------T--G-CG-A-G-ATTTTCAT--A--CCATGATCACCAT------AT--T---ACT---------CA---------TC-G----T----TTGGCCTCAGTAA-AACAAA-TACTG-CTT--
gi|73943 : ATAGCT-G-G--TTT---TTGTG--AGTG------T--G-CG-A-G-ATTTTCAT--G--CAAAGGTTACAGT------AT--T---ACC---------CATCGA-TTGGCG-G----T----TTGATTTCAATGA-AATGAA-CTCTA-TTT--TGCCTA
gi|73946 : ACAGTT-T-G--CTT---CAGCG--ATCG------T--G-CA-A-A-ATTGTCAT--G--CAATGGTTATCGC------AT--T---ATC---------CATCGA-TTGGCT-A----T----------TCAATAA-AATGAA-CTCTC-TTC--TGCATATCAAtc
gi|73952 : ATAGGT-C-G--CTT---CAGCG--AG--------------------ATTTTCTT--A--CTAGGATCACCAT------AT--T---GCT---------AAC-AA-TTTGCC-GGTTTT----TTGGTTTCAATAA-AATGAA-TTCTG-TTT--GGTATA
gi|73955 : TAGTTTC-G--CTC---AGTTGG-AGCGG-----T--G-CA-A-TTGTTTT-AT--A--ACATGAGTACCAT------AT--TATTACT---------CACCGA-TTTGTC-G----T----TTGGTTTCTATAGAAATGAA-AACTGTTTT--TGCATATCAA
gi|73954 : TGGTC-T-G--CTT---TAGAA--AGCA------T--T-CC-A-G-ATTTTCAC--A--TCACGATTGCCAT------AT--T---ACT---------CATCGA-TTGGCT-G----T----TTTATTTCAATGA-AATGAA-CACTA-TTT--TGCATATCAA
gi|73957 : TAGTT-TAG--CTT---CAGCG--AGCGG-----T--G-CA-AAT-GTTTTCAT--A--AC-----------------AT--T---ACT---------CACCGA-TTCTGC-A----T----TTGTTCTCAAT---GACGAA-TACTG--TT--TGCATAACAA
gi|73958 : AGTT-C-G--CTT---CAGTG--AGTG------T--G-CA-A-T-GTTTCCAT--A--ACATGACTACCAT------ATATT---ACT---------CACCGA-AAGGTC-G----T----TTGGTCCCAATAG-AATGAA-TACTG-TTT--TGCA
gi|73959 : AGTT-C-A--CAT---CAGTG--AGCG------T--G-CG-A-A-ATTTTTAT--G--CAATGGTTACTGT------AT--T---ACT---------CATCGA-GTGGTA-G----T----TCGATTTC
gi|73945 : TC-C-G--CTTTGACAGTA--AGCA------T--G-CC-A-G-ATTTTCAC--ATCACAA-ATTAC-AT------AT--T---ACT---------CATAGA-TTAGAC-T----G----TTGATTCAAATGA-AATGAA-CA-TC-TAT--TGCATA
gi|73951 : atgattG--AGTG------T--G-CG-A-G-ATTTTCAT--G--CAATGATTACCGT------GT--T---ATC---------CATCGA-TTGCGC-G----TAAAATTAA----AATGA-AATGAA-CTCTA--TT--TGCATATCAAgtcaa
gi|73962 : atagttgacgtatgcTTTTCAC--A--TCACGATTACCAT------AT--T---ATT---------CATCGA-ATGGCT-G----T----TTGATTTCAATGA-AATGGA-CACTA-TTT--TGCATATCAA
gi|73961 : agaaTTTTCAC--A--TCACGATTACCAT------AT--T---ATT---------CATCGA-ATGGCT-G----T----TTGATTTCAATGA-AATGGA-CACTA-TTT--TGCATATCAA
gi|73960 : agaaATTATCATGCAATGAT--T---ACC---------CATCCA-TTGGCA-G----T----TTAATTTCAATGA-AATGAA-CTCTA-TTT---GCATACCAA
gi|73956 : ctttataagtgtgcgagT--T---ACC---------CATTGA-TTGGCG-G----T----TTGACTTCAATGA-AATAAACTTTTT-TTT--TGCATATCAA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|73963 ): TTGATTTCAATGAAATGAACACTATTTTGTAAATTAA
Alignments
lowQualScore : 1 1 222 11 666666 3 22 1 1 6 1 11 1 222 666666666 1 2222 0 1 1 1 11 1
lowQualScore : . . ... .. ...... . .. . . . . .. . ... ......... . .... . . . . .. .
lowQualScore : 4 4 333 88 555555 3 22 2 0 1 2 77 2 222 222222222 2 7777 7 2 2 2 77 4
consensus : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
Reference ( family-578 ) : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAN-ATTTT-CATANCACGA-TTACCATAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
gi|73931 : ATAGTT-T-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-T---AT---------CATCGA-TTGGCTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCA
gi|73932 : ATAGTT-C-GCTT---CAGT--GATCA------TGCAAT-GTTTT-CATAGCATGA-CTACCATAT--T-A---CT---------TACCGA-TTGGCCG----TTTGGTCTCAAT-AAATTGAAT-ATTG-TTT--TGAATA-TCAA
gi|73933 : ATAGTT-C-GCTT---CAGT--AAGCA------TGTCAG-ATTTT-CTCTTCACGA-TTACCATAT--T-A---TT---------CATCGA-TTGGTTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73934 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGG-TTGGCTG----TTTGATTTCAAT-GAAATGAAT-AC---TTT--TGCTTA-TCAA
gi|73935 : ATAGTT-C-GCTT---CCGT--AAGCAAAACAATG-AAT-GTTTT-CATAACATGA-CTACCATAT--T-A---CT---------AACCGA-TTAGTCG----TT---------T-AAAATGAAT-ACTG-TTT--TGCATA-TCAA
gi|73936 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAT--TTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGA-TTGGCTG----TCTGATTTCAAT-GAACTGAAC-ACTT-TCTTATGAATA-ACAA
gi|73937 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CT---------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73938 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CTC--------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73939 : ACAGTT-C-GCTT---CAGT--GAGCA------TGCAAA-ATTTT-CAT-GCATGG-TCATCGTAT--T-A---TC---------TATTGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TTTA-TTT--TG
gi|73940 : ATAGTT-G-ACCT---TCGT--GAGAG------TGCAAA-GTTTT-CATGCAATGA-TTACCGTGT--T-A---CC---------CATCGA-TTGGTGG----TTTAATTTCAAT-GAAATGAAC-TCTG--TT--TGTATA-TCAAt
gi|73941 : ATAGTT-G-ACCT---TTGT--CAGTG------TGTGAG-ATTAT-CACACCATGA-TCACCATAT--T-A---CTGTACCTACTCATCGA-TTGGCCG----TTTGGTCTCAAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73942 : ACAGTT-C-GCAT---CACT--GAGCA------TTTGAA-ATTTTTCATGCAACGG-TTACTGTAT--T-A---CC---------CATCAA-TTGGCGG----TTTGATTTCAAT-GAAATTAAT-TCCA-TTT--TGTATA-TCAA
gi|73943 : ATAGCT-G-GTTT---TTGT--GAGTG------TGCGAG-ATTTT-CATGCAAAGG-TTACAGTAT--T-A---CC---------CATCGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TCTA-TTT--TGCCTA-TC
gi|73944 : ATAGTC-G-ACCT---TTGT--GAGCG------TGCGAG-ATTTT-CATACCATGA-TCATCATAT--TTA---CT---------CATCGA-TTGGCCG----TCTGGTCTCGAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73945 : TC-C-GCTTTGACAGT--AAGCA------TGCCAG-ATTTT-CACATCACAAATTAC-ATAT--T-A---CT---------CATAGA-TTAGACT----GTTGATTCAAAT-GAAATGAAC-A-TC-TAT--TGCATAGTCAA
gi|73946 : atgattACAGTT-T-GCTT---CAGC--GATCG------TGCAAA-ATTGT-CATGCAATGG-TTATCGCAT--T-A---TC---------CATCGA-TTGGCTA----------TTCAAT-AAAATGAAC-TCTC-TTC--TGCATA-TCAA
gi|73947 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTATT-CATAACA------------T--T-A---CT---------CACCGA-CTGGCCA----GTTGGTCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73948 : ATAGTT-C-GCTT---TAGT--GAGCG------TGCAAT-GTTTT-CATAACA------------T--T-A---TT---------CACCGA-CTGACCA----TTTAGTCTCAAT-AGAATGAAT-GCTA-TTT--TGCATA-ACAA
gi|73949 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTTTT-CATAAC------------AT--T-A---CT---------CACCGAGCTGGCCA----GTTG-TCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73950 : ATAGTT-G-ACCT---TTAT--GAGTG------TGCGAG-ATTTT-CATACCATGA-TCACCATAT--T-A---CT---------CATCGT-TTGGCC------------TCAGT-AAAACAAAT-ACTG-CTT--
gi|73951 : ATAGTT-G-ACGT---ATGC--GAGTG------TGCGAG-ATTTT-CATGCAATGA-TTACCGTGT--T-A---TC---------CATCGA-TTGCGCG----TAAAATTAAAAT-GAAATGAAC-TCTA--TT--TGCATA-TCAA
gi|73952 : ATAGGT-C-GCTT---CAG----------------CGAG-ATTTT-CTTACTAGGA-TCACCATAT--T-G---CT---------AA-CAA-TTTGCCGGTTTTTTGGTTTCAAT-AAAATGAAT-TCTG-TTT--GGTATA-
gi|73953 : ACAGTT-C-GCTA---AAAC--GAATT------TGCAAT-ATTTT-CATTCCAGTA-TTGTCATTT--T-A---CT---------CATCGA-ATGGCCG----TTTGCTATCACT-AGAATAACT-GTTG-TTT--TGAATA-TCAA
gi|73954 : TGGTC-T-GCTT---TAGA--AAGCA------TTCCAG-ATTTT-CACATCACGA-TTGCCATAT--T-A---CT---------CATCGA-TTGGCTG----TTTTATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73955 : TAGTTTC-GCT----CAGTTGGAGCGG-----TGCAAT-TGTTT-TATAACATGA-GTACCATAT--T-ATTACT---------CACCGA-TTTGTCG----TTTGGTTTCTATAGAAATGAAA-ACTGTTTT--TGCATA-TCAA
gi|73956 : TAGTT-G-TCTT---TTGT--GAGTA------TG--AG-ATTTT-CAT-GCAAGG-TTCCTGGCT--T-A---CC---------CATTGA-TTGGCGG----TTTGACTTCAAT-GAAATAAACTTTTT-TTT--TGCATA-TCAA
gi|73957 : TAGTT-TAGCTT---CAGC--GAGCGG-----TGCAAATGTTTT-CATAACA------------T--T-A---CT---------CACCGA-TTCTGCA----TTTGTTCTCAAT-G--ACGAAT-ACTG--TT--TGCATA-ACAA
gi|73958 : AGTT-C-GCTT---CAGT--GAGTG------TGCAAT-GTTTC-CATAACATGA-CTACCATATATT-A---CT---------CACCGA-AAGGTCG----TTTGGTCCCAAT-AGAATGAAT-ACTG-TTT--TGCA
gi|73959 : AGTT-C-ACAT---CAGT--GAGCG------TGCGAA-ATTTT-TATGCAATGG-TTACTGTAT--T-A---CT---------CATCGA-GTGGTAG----TTCGATTTC
gi|73960 : CTT---TA-T--AAGTG------TGCGAG-ATTAT-CATGCAATGA-TTACC-----------------------CATCCA-TTGGCAG----TTTAATTTCAAT-GAAATGAAC-TCTA--TT--TGCATA-CCAA
gi|73961 : -ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73962 : aga-ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73963 : agaTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGTAAA-TTAA
Alignments
lowQualScore : 1 1 222 11 666666 3 33 1 1 6 1 4 11 1 222 666666666 1 2222 0 1 1 1 11 1
lowQualScore : . . ... .. ...... . .. . . . . . .. . ... ......... . .... . . . . .. .
lowQualScore : 4 4 333 88 555555 3 66 2 0 1 2 2 77 2 222 222222222 2 7777 7 2 2 2 77 4
consensus : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
Reference ( family-578 ) : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
gi|73931 : ATAGTT-T-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-T---AT---------CATCGA-TTGGCTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCA
gi|73932 : ATAGTT-C-GCTT---CAGT--GATCA------TGCAAT-GTTTT-CATAGCATGA-CTACCATAT--T-A---CT---------TACCGA-TTGGCCG----TTTGGTCTCAAT-AAATTGAAT-ATTG-TTT--TGAATA-TCAA
gi|73933 : ATAGTT-C-GCTT---CAGT--AAGCA------TGTCAG-ATTTT-CTCTTCACGA-TTACCATAT--T-A---TT---------CATCGA-TTGGTTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73934 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGG-TTGGCTG----TTTGATTTCAAT-GAAATGAAT-AC---TTT--TGCTTA-TCAA
gi|73935 : ATAGTT-C-GCTT---CCGT--AAGCAAAACAATG-AAT-GTTTT-CATAACATGA-CTACCATAT--T-A---CT---------AACCGA-TTAGTCG----TT---------T-AAAATGAAT-ACTG-TTT--TGCATA-TCAA
gi|73936 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAT--TTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGA-TTGGCTG----TCTGATTTCAAT-GAACTGAAC-ACTT-TCTTATGAATA-ACAA
gi|73937 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CT---------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73938 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CTC--------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73939 : ACAGTT-C-GCTT---CAGT--GAGCA------TGCAAA-ATTTT-CAT-GCATGG-TCATCGTAT--T-A---TC---------TATTGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TTTA-TTT--TG
gi|73940 : ATAGTT-G-ACCT---TCGT--GAGAG------TGCAAA-GTTTT-CATGCAATGA-TTACCGTGT--T-A---CC---------CATCGA-TTGGTGG----TTTAATTTCAAT-GAAATGAAC-TCTG--TT--TGTATA-TCAAt
gi|73941 : ATAGTT-G-ACCT---TTGT--CAGTG------TGTGAG-ATTAT-CACACCATGA-TCACCATAT--T-A---CTGTACCTACTCATCGA-TTGGCCG----TTTGGTCTCAAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73942 : ACAGTT-C-GCAT---CACT--GAGCA------TTTGAA-ATTTTTCATGCAACGG-TTACTGTAT--T-A---CC---------CATCAA-TTGGCGG----TTTGATTTCAAT-GAAATTAAT-TCCA-TTT--TGTATA-TCAA
gi|73943 : ATAGCT-G-GTTT---TTGT--GAGTG------TGCGAG-ATTTT-CATGCAAAGG-TTACAGTAT--T-A---CC---------CATCGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TCTA-TTT--TGCCTA-TC
gi|73944 : ATAGTC-G-ACCT---TTGT--GAGCG------TGCGAG-ATTTT-CATACCATGA-TCATCATAT--TTA---CT---------CATCGA-TTGGCCG----TCTGGTCTCGAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73945 : TC-C-GCTTTGACAGT--AAGCA------TGCCAG-ATTTT-CACATCACAAATTAC-ATAT--T-A---CT---------CATAGA-TTAGACT----GTTGATTCAAAT-GAAATGAAC-A-TC-TAT--TGCATAGTCAA
gi|73946 : atgattACAGTT-T-GCTT---CAGC--GATCG------TGCAAA-ATTGT-CATGCAATGG-TTATCGCAT--T-A---TC---------CATCGA-TTGGCTA----------TTCAAT-AAAATGAAC-TCTC-TTC--TGCATA-TCAA
gi|73947 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTATT-CATAACA------------T--T-A---CT---------CACCGA-CTGGCCA----GTTGGTCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73948 : ATAGTT-C-GCTT---TAGT--GAGCG------TGCAAT-GTTTT-CATAACA------------T--T-A---TT---------CACCGA-CTGACCA----TTTAGTCTCAAT-AGAATGAAT-GCTA-TTT--TGCATA-ACAA
gi|73949 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTTTT-CATAAC------------AT--T-A---CT---------CACCGAGCTGGCCA----GTTG-TCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73950 : ATAGTT-G-ACCT---TTAT--GAGTG------TGCGAG-ATTTT-CATACCATGA-TCACCATAT--T-A---CT---------CATCGT-TTGGCC------------TCAGT-AAAACAAAT-ACTG-CTT--
gi|73951 : ATAGTT-G-ACGT---ATGC--GAGTG------TGCGAG-ATTTT-CATGCAATGA-TTACCGTGT--T-A---TC---------CATCGA-TTGCGCG----TAAAATTAAAAT-GAAATGAAC-TCTA--TT--TGCATA-TCAA
gi|73952 : ATAGGT-C-GCTT---CAG----------------CGAG-ATTTT-CTTACTAGGA-TCACCATAT--T-G---CT---------AA-CAA-TTTGCCGGTTTTTTGGTTTCAAT-AAAATGAAT-TCTG-TTT--GGTATA-
gi|73953 : ACAGTT-C-GCTA---AAAC--GAATT------TGCAAT-ATTTT-CATTCCAGTA-TTGTCATTT--T-A---CT---------CATCGA-ATGGCCG----TTTGCTATCACT-AGAATAACT-GTTG-TTT--TGAATA-TCAA
gi|73954 : TGGTC-T-GCTT---TAGA--AAGCA------TTCCAG-ATTTT-CACATCACGA-TTGCCATAT--T-A---CT---------CATCGA-TTGGCTG----TTTTATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73955 : TAGTTTC-GCT----CAGTTGGAGCGG-----TGCAAT-TGTTT-TATAACATGA-GTACCATAT--T-ATTACT---------CACCGA-TTTGTCG----TTTGGTTTCTATAGAAATGAAA-ACTGTTTT--TGCATA-TCAA
gi|73956 : TAGTT-G-TCTT---TTGT--GAGTA------TG--AG-ATTTT-CAT-GCAAGG-TTCCTGGCT--T-A---CC---------CATTGA-TTGGCGG----TTTGACTTCAAT-GAAATAAACTTTTT-TTT--TGCATA-TCAA
gi|73957 : TAGTT-TAGCTT---CAGC--GAGCGG-----TGCAAATGTTTT-CATAACA------------T--T-A---CT---------CACCGA-TTCTGCA----TTTGTTCTCAAT-G--ACGAAT-ACTG--TT--TGCATA-ACAA
gi|73958 : AGTT-C-GCTT---CAGT--GAGTG------TGCAAT-GTTTC-CATAACATGA-CTACCATATATT-A---CT---------CACCGA-AAGGTCG----TTTGGTCCCAAT-AGAATGAAT-ACTG-TTT--TGCA
gi|73959 : AGTT-C-ACAT---CAGT--GAGCG------TGCGAA-ATTTT-TATGCAATGG-TTACTGTAT--T-A---CT---------CATCGA-GTGGTAG----TTCGATTTC
gi|73960 : CTT---TA-T--AAGTG------TGCGAG-ATTAT-CATGCAATGA-TTACC-----------------------CATCCA-TTGGCAG----TTTAATTTCAAT-GAAATGAAC-TCTA--TT--TGCATA-CCAA
gi|73961 : -ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73962 : aga-ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73963 : agaTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGTAAA-TTAA
blockSeqs : T A TGA TG AAACAA A AT T G T A A AT T TTA GTACCTACT G GTTT A T T TA G
blockSeqs : . . . . G C T . T C . A . . . C . . . . . . .
blockSeqs : . . . . G C G . T C . A . . . . . . . . . . .
blockSeqs : . . . . . A G . A T . A . . . . . . . . . . .
blockSeqs : . . . . . C T . T C . A . . . . . . . . . . .
blockSeqs : . . . . . A T . A T . A . . . . . . . . . . .
blockSeqs : . . . . . A T . A T . A . . . . . . . . . . .
blockSeqs : . . . . . A T . G T . G . . . . . . . . . . .
blockSeqs : . . . . . A A . C T . G . . . . . . . . . . .
blockSeqs : . . . . . G A . C T . A . . . . . . . . . . .
blockSeqs : . . . . . G G . C C . G . . . . . . . . . . .
blockSeqs : . . . . . G A . C A . G . . . . . . . . . . .
blockSeqs : . . . . . G G . C T . A . . . . . . . . . . .
blockSeqs : . . . . . C G . T C . A . . . . . . . . . . .
blockSeqs : . . . . . A G . C T . G . . . . . . . . . . .
blockSeqs : . . . . . A A . A T . A . . . . . . . . . . .
blockSeqs : . . . . . A T . A T . G . . . . . . . . . . .
blockSeqs : . . . . . A T . A G . A . . . . . . . . . . .
blockSeqs : . . . . . G T . C G . A . . . . . . . . . . .
blockSeqs : . . . . . G G . C C . A . . . . . . . . . . .
blockSeqs : . . . . . G G . C T . A . . . . . . . . . . .
blockSeqs : . . . . . A G . C A . G . . . . . . . . . . .
blockSeqs : . . . . . C T . T T . A . . . . . . . . . . .
blockSeqs : . . . . . A G . A T . G . . . . . . . . . . .
blockSeqs : . . . . . A T . G T . A . . . . . . . . . . .
blockSeqs : . . . . . A G . A C . A . . . . . . . . . . .
blockSeqs : . . . . . G T . A C . . . . . . . . . . . . .
blockSeqs : . . . . . G A . C . . . . . . . . . . . . . .
blockSeqs : . . . . G . C . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . .
blockSeqCons :
originalCons : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
finalCons : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
Alignments
lowQualScore : 1 1 222 11 666666 3 33 1 1 6 1 4 11 1 222 666666666 1 2222 0 1 1 1 11 1
lowQualScore : . . ... .. ...... . .. . . . . . .. . ... ......... . .... . . . . .. .
lowQualScore : 4 4 333 88 555555 3 66 2 0 1 2 2 77 2 222 222222222 2 7777 7 2 2 2 77 4
consensus : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
Reference ( family-578 ) : ATAGTT-C-GCTT---CAGT--GAGCG------TGCGAG-ATTTT-CATANCACGA-TTACCGTAT--T-A---CT---------CATCGA-TTGGCCG----TTTGATTTCAAT-GAAATGAAC-ACTG-TTT--TGCATA-TCAA
gi|73931 : ATAGTT-T-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-T---AT---------CATCGA-TTGGCTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCA
gi|73932 : ATAGTT-C-GCTT---CAGT--GATCA------TGCAAT-GTTTT-CATAGCATGA-CTACCATAT--T-A---CT---------TACCGA-TTGGCCG----TTTGGTCTCAAT-AAATTGAAT-ATTG-TTT--TGAATA-TCAA
gi|73933 : ATAGTT-C-GCTT---CAGT--AAGCA------TGTCAG-ATTTT-CTCTTCACGA-TTACCATAT--T-A---TT---------CATCGA-TTGGTTG----TTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73934 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAG-ATTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGG-TTGGCTG----TTTGATTTCAAT-GAAATGAAT-AC---TTT--TGCTTA-TCAA
gi|73935 : ATAGTT-C-GCTT---CCGT--AAGCAAAACAATG-AAT-GTTTT-CATAACATGA-CTACCATAT--T-A---CT---------AACCGA-TTAGTCG----TT---------T-AAAATGAAT-ACTG-TTT--TGCATA-TCAA
gi|73936 : ATAGTT-C-GCTT---CAGT--AAGCA------TGCCAT--TTTT-CACATCACGA-TTACCATAT--T-A---CT---------CATCGA-TTGGCTG----TCTGATTTCAAT-GAACTGAAC-ACTT-TCTTATGAATA-ACAA
gi|73937 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CT---------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73938 : ATAGTT-C-GCTT---CATT--GAGCG------TGCAAT-GTTTT-CATAACATTA-TTACCATAT--T-A---CTC--------CACCGA-TTGGCCG----TTTGGTCTCAGT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73939 : ACAGTT-C-GCTT---CAGT--GAGCA------TGCAAA-ATTTT-CAT-GCATGG-TCATCGTAT--T-A---TC---------TATTGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TTTA-TTT--TG
gi|73940 : ATAGTT-G-ACCT---TCGT--GAGAG------TGCAAA-GTTTT-CATGCAATGA-TTACCGTGT--T-A---CC---------CATCGA-TTGGTGG----TTTAATTTCAAT-GAAATGAAC-TCTG--TT--TGTATA-TCAAt
gi|73941 : ATAGTT-G-ACCT---TTGT--CAGTG------TGTGAG-ATTAT-CACACCATGA-TCACCATAT--T-A---CTGTACCTACTCATCGA-TTGGCCG----TTTGGTCTCAAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73942 : ACAGTT-C-GCAT---CACT--GAGCA------TTTGAA-ATTTTTCATGCAACGG-TTACTGTAT--T-A---CC---------CATCAA-TTGGCGG----TTTGATTTCAAT-GAAATTAAT-TCCA-TTT--TGTATA-TCAA
gi|73943 : ATAGCT-G-GTTT---TTGT--GAGTG------TGCGAG-ATTTT-CATGCAAAGG-TTACAGTAT--T-A---CC---------CATCGA-TTGGCGG----TTTGATTTCAAT-GAAATGAAC-TCTA-TTT--TGCCTA-TC
gi|73944 : ATAGTC-G-ACCT---TTGT--GAGCG------TGCGAG-ATTTT-CATACCATGA-TCATCATAT--TTA---CT---------CATCGA-TTGGCCG----TCTGGTCTCGAT-AAAATGAAT-ACTG-CTT--TACATA-TCAA
gi|73945 : TC-C-GCTTTGACAGT--AAGCA------TGCCAG-ATTTT-CACATCACAAATTAC-ATAT--T-A---CT---------CATAGA-TTAGACT----GTTGATTCAAAT-GAAATGAAC-A-TC-TAT--TGCATAGTCAA
gi|73946 : atgattACAGTT-T-GCTT---CAGC--GATCG------TGCAAA-ATTGT-CATGCAATGG-TTATCGCAT--T-A---TC---------CATCGA-TTGGCTA----------TTCAAT-AAAATGAAC-TCTC-TTC--TGCATA-TCAA
gi|73947 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTATT-CATAACA------------T--T-A---CT---------CACCGA-CTGGCCA----GTTGGTCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73948 : ATAGTT-C-GCTT---TAGT--GAGCG------TGCAAT-GTTTT-CATAACA------------T--T-A---TT---------CACCGA-CTGACCA----TTTAGTCTCAAT-AGAATGAAT-GCTA-TTT--TGCATA-ACAA
gi|73949 : ATAGTT-C-GCTT---CAGT--GAGCG------TGCAAT-GTTTT-CATAAC------------AT--T-A---CT---------CACCGAGCTGGCCA----GTTG-TCTCAAT-AGAATGAAT-ACTG-TTT--TGCATA-ACAA
gi|73950 : ATAGTT-G-ACCT---TTAT--GAGTG------TGCGAG-ATTTT-CATACCATGA-TCACCATAT--T-A---CT---------CATCGT-TTGGCC------------TCAGT-AAAACAAAT-ACTG-CTT--
gi|73951 : ATAGTT-G-ACGT---ATGC--GAGTG------TGCGAG-ATTTT-CATGCAATGA-TTACCGTGT--T-A---TC---------CATCGA-TTGCGCG----TAAAATTAAAAT-GAAATGAAC-TCTA--TT--TGCATA-TCAA
gi|73952 : ATAGGT-C-GCTT---CAG----------------CGAG-ATTTT-CTTACTAGGA-TCACCATAT--T-G---CT---------AA-CAA-TTTGCCGGTTTTTTGGTTTCAAT-AAAATGAAT-TCTG-TTT--GGTATA-
gi|73953 : ACAGTT-C-GCTA---AAAC--GAATT------TGCAAT-ATTTT-CATTCCAGTA-TTGTCATTT--T-A---CT---------CATCGA-ATGGCCG----TTTGCTATCACT-AGAATAACT-GTTG-TTT--TGAATA-TCAA
gi|73954 : TGGTC-T-GCTT---TAGA--AAGCA------TTCCAG-ATTTT-CACATCACGA-TTGCCATAT--T-A---CT---------CATCGA-TTGGCTG----TTTTATTTCAAT-GAAATGAAC-ACTA-TTT--TGCATA-TCAA
gi|73955 : TAGTTTC-GCT----CAGTTGGAGCGG-----TGCAAT-TGTTT-TATAACATGA-GTACCATAT--T-ATTACT---------CACCGA-TTTGTCG----TTTGGTTTCTATAGAAATGAAA-ACTGTTTT--TGCATA-TCAA
gi|73956 : TAGTT-G-TCTT---TTGT--GAGTA------TG--AG-ATTTT-CAT-GCAAGG-TTCCTGGCT--T-A---CC---------CATTGA-TTGGCGG----TTTGACTTCAAT-GAAATAAACTTTTT-TTT--TGCATA-TCAA
gi|73957 : TAGTT-TAGCTT---CAGC--GAGCGG-----TGCAAATGTTTT-CATAACA------------T--T-A---CT---------CACCGA-TTCTGCA----TTTGTTCTCAAT-G--ACGAAT-ACTG--TT--TGCATA-ACAA
gi|73958 : AGTT-C-GCTT---CAGT--GAGTG------TGCAAT-GTTTC-CATAACATGA-CTACCATATATT-A---CT---------CACCGA-AAGGTCG----TTTGGTCCCAAT-AGAATGAAT-ACTG-TTT--TGCA
gi|73959 : AGTT-C-ACAT---CAGT--GAGCG------TGCGAA-ATTTT-TATGCAATGG-TTACTGTAT--T-A---CT---------CATCGA-GTGGTAG----TTCGATTTC
gi|73960 : CTT---TA-T--AAGTG------TGCGAG-ATTAT-CATGCAATGA-TTACC-----------------------CATCCA-TTGGCAG----TTTAATTTCAAT-GAAATGAAC-TCTA--TT--TGCATA-CCAA
gi|73961 : -ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73962 : aga-ATTTT-CACATCACGA-TTACCATAT--T-A---TT---------CATCGA-ATGGCTG----TTTGATTTCAAT-GAAATGGAC-ACTA-TTT--TGCATA-TCAA
gi|73963 : agaTTGATTTCAAT-GAAATGAAC-ACTA-TTT--TGTAAA-TTAA