lowQualScore : 3 1111
lowQualScore : 6 1 77 3333 1 33 66
lowQualScore : . . .. .... . .. ..
lowQualScore : 5 2 55 4444 7 44 00
consensus : CCATAGGACCACTC-TCTCACCTGCNTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCGTAGGACCAC
Reference ( gi|32524 ) : CCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32520 : CCATAGGACCAC-CCTCTCACCTGAGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32515 : CCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32513 : CCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32519 : CCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAG
gi|32523 : CCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32509 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32511 : CCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32503 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACTC-TCTCACCTG-----AG--TGT-GGACCAC
gi|32502 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACTC-TCTCACCTG-----AG--TGT-GGACCACagaa
gi|32501 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACTC-TCTCACCTG-----AG--TGT-GGACCACagaa
gi|32504 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGAagaa
gi|32508 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGACCACTC-TCTCACCTG
gi|32505 : CCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGAagt
gi|32505 : ccataggaccactctctcacctgcttgcagcCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32510 : CCCTAGGACCACTC-TCTCACCTGAGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32512 : CCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32518 : CCATAGGACCACTC-TCTCACCTGAGTACAATCCCTAGGACCACTC-TCTCACCTG
gi|32506 : CCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGAagt
gi|32526 : CCCTATGACCACTC-TCTCACCTGAGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAG
gi|32507 : CCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGAacc
gi|32517 : CCACAGAACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32516 : CCACAGAACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32532 : CCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32522 : tcacctgcttgcagcCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32525 : ccctatgaccactctctcacctgtttgcagaccttcacctgcttgcagCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32527 : ccctatgacccactctctcacctgttttgcagaccttcctgcttgcagcCCCTATGACCACTC-TCTTACCTGAGTACAATCCCTATGACCACTCGTCTCACTTG
gi|32533 : CCATAGGACCACTC-TCTCACCTGAGTGagt
gi|32529 : cttgcagcCATAGGACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGA
gi|32528 : CATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGACCACTC-TCTCACCTG
gi|32530 : CATAGGACCACTC-TCTCACCTGCTTGCAGCACATAGGACCAC-C-TCTCACagt
gi|32531 : TAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAACCACTC-TCTCACCTGtattctgtggtccaca
gi|32522 : AC-C-T-TCACCTGCTTGCAG-CCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32532 : ccctatgaccactctctcacctgtttgcagTCACCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32525 : CCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : ccctatgacccactctctcacctgttttgcagaccttTGCAGCCCATAGGACCACTC-TCTCACCTG
gi|32503 : ctCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACagtg
gi|32502 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACtctctcacctgagtgtggaccacagaa
gi|32501 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCACtctctcacctgagtgtggaccacagaa
gi|32508 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGACCACtctctcacctgagtgtggaccacagaa
gi|32505 : CCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGACCACtctctcacctgagt
gi|32518 : CCATAGGACCACTC-TCTCACCTGAGTACAATCCCTAGGACCACctctcacctgagtgtggaccatagga
gi|32526 : CCCTATGACCACTC-TCTCACCTGAGTACAATCCCTATGACCACtctctcacctgagt
gi|32507 : CCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAGGGCCAtctctcacctgtttgcagacc
gi|32517 : CCACAGAACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACatcttttcacctgagtgtggaccatagga
gi|32516 : CCACAGAACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACtctctcacctg
gi|32527 : CCCTATGACCACTC-TCTTACCTGAGTACAATCCCTATGACCACtctctcacctg
gi|32528 : CATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGACCACtcgtctcacttgagt
gi|32530 : CATAGGACCACTC-TCTCACCTGCTTGCAGCACATAGGACCACtctctcacctgagt
gi|32531 : TAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAACCACctctcactattctgtggtccaca
gi|32533 : CTTGCAGCCCATAGGACCACtctctcacctg
Alignments
lowQualScore : 1 8888888888888888888 2 44 4
lowQualScore : . ................... . .. .
lowQualScore : 3 5555555555555555555 4 22 0
consensus : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGCNTGCGGCCCATAGGACCAC
Reference ( family-566 ) : CCATAGGACC-ACTCTCTCACCTG-----------------CNTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCGTAGGACCAC
gi|32501 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32502 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32503 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32504 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGA
gi|32505 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32506 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGA
gi|32507 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGA
gi|32508 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTG
gi|32509 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAGagt
gi|32510 : CCCTAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32511 : CCATAGGACC-ACTCTCTCAC-TG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32512 : CCACAGAACC-TCTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32513 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32515 : CCATAGGACC-ACACTCTCACCTG-----------------CGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32516 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32517 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32518 : CCATAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTG
gi|32519 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAGagt
gi|32520 : CCATAGGACC-ACCCTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCC-ACTCTTTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32522 : CCCTATGACC-ACTCTCTCACCTG-----------------TTTGCAG--------ACC------TTCACCTGCTTGCAGCC-ATAGGACCAC
gi|32522 : TCACCTG-----------------CTTGCAGCC-ATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGAactctcacctgagtgcagcccatagga
gi|32523 : ccctatgaccactctctcacctgtttgcagacctCCCTAGGACC-ACTCTCTCACCTG-----------------AGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32524 : CCATAGGACC-AC-CTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32525 : CCCTATGACCCACTCTCTCACCTGTTTTGCAGACCTTCCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32526 : CCCTATGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAGACC
gi|32527 : CCCTATGACC-ACTCTCTTACCTG-----------------AGTACAATCCCTATGACCACTCGTCTCACTTG
gi|32528 : CATAGGACC-ACTCTCTCACCTA-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGagt
gi|32529 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGAagt
gi|32530 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCAC-C-TCTCAC
gi|32531 : TAGGACC-ACTCTCTCACCTG-----------------AGTGTGGACCACAGAACCACTC-TCTCACCTGtattctgtggtccaca
gi|32532 : TCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : -----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTG
Alignments
lowQualScore : 1 88888888888888888 0 2 33 0
lowQualScore : . ................. . . .. .
lowQualScore : 3 22222222222222222 2 4 33 8
consensus : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNNTGCGGCCCATAGGACCAC
Reference ( family-566 ) : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGCNTGCGGCCCATAGGACCAC
gi|32501 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32502 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32503 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32504 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGA
gi|32505 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32506 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGA
gi|32507 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGA
gi|32508 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTG
gi|32509 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAGagt
gi|32510 : CCCTAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32511 : CCATAGGACC-ACTCTCTCAC-TG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32512 : CCACAGAACC-TCTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32513 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32515 : CCATAGGACC-ACACTCTCACCTG-----------------CGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32516 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32517 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32518 : CCATAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTG
gi|32519 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAGagt
gi|32520 : CCATAGGACC-ACCCTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCC-ACTCTTTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32522 : CCCTATGACC-ACTCTCTCACCTG-----------------TTTGCAG--------ACC------TTCACCTGCTTGCAGCC-ATAGGACCAC
gi|32522 : TCACCTG-----------------CTTGCAGCC-ATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGAactctcacctgagtgcagcccatagga
gi|32523 : ccctatgaccactctctcacctgtttgcagacctCCCTAGGACC-ACTCTCTCACCTG-----------------AGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32524 : CCATAGGACC-AC-CTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32525 : CCCTATGACCCACTCTCTCACCTGTTTTGCAGACCTTCCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32526 : CCCTATGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAGACC
gi|32527 : CCCTATGACC-ACTCTCTTACCTG-----------------AGTACAATCCCTATGACCACTCGTCTCACTTG
gi|32528 : CATAGGACC-ACTCTCTCACCTA-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGagt
gi|32529 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGAagt
gi|32530 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCAC-C-TCTCACTATTCTGTGGTCCACA
gi|32531 : TAGGACC-ACTCTCTCACCTG-----------------AGTGTGGACCACAGAACCACTC-TCTCACCTG
gi|32532 : TCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : -----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAGTG
Alignments
lowQualScore : 1 88888888888888888 0 2 22 0
lowQualScore : . ................. . . .. .
lowQualScore : 3 22222222222222222 2 4 00 8
consensus : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
Reference ( family-566 ) : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNNTGCGGCCCATAGGACCAC
gi|32501 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32502 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32503 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32504 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGA
gi|32505 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32506 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGA
gi|32507 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGA
gi|32508 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32509 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32510 : CCCTAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32511 : CCATAGGACC-ACTCTCTCAC-TG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32512 : CCACAGAACC-TCTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32513 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32515 : CCATAGGACC-ACACTCTCACCTG-----------------CGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32516 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32517 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32518 : CCATAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAG
gi|32519 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAG
gi|32520 : CCATAGGACC-ACCCTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCC-ACTCTTTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32522 : CCCTATGACC-ACTCTCTCACCTG-----------------TTTGCAG--------ACC------TTCACCTGCTTGCAGCC-ATAGGACCAC
gi|32522 : TCACCTG-----------------CTTGCAGCC-ATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGAactctcacctgagtgcagcccatagga
gi|32523 : ccctatgaccactctctcacctgtttgcagacctCCCTAGGACC-ACTCTCTCACCTG-----------------AGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32524 : CCATAGGACC-AC-CTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32525 : CCCTATGACCCACTCTCTCACCTGTTTTGCAGACCTTCCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32526 : CCCTATGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAGACC
gi|32527 : CCCTATGACC-ACTCTCTTACCTG-----------------AGTACAATCCCTATGACCACTCGTCTCACTTGAG
gi|32528 : CATAGGACC-ACTCTCTCACCTA-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32529 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGA
gi|32530 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCAC-C-TCTCACTATTCTGTGGTCCACA
gi|32531 : TAGGACC-ACTCTCTCACCTG-----------------AGTGTGGACCACAGAACCACTC-TCTCACCTG
gi|32532 : TCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : -----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAGTG
Alignments
lowQualScore : 1 88888888888888888 0 2 22 0
lowQualScore : . ................. . . .. .
lowQualScore : 3 22222222222222222 2 4 33 8
consensus : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
Reference ( family-566 ) : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
gi|32501 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32502 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32503 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32504 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGA
gi|32505 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32506 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGA
gi|32507 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGA
gi|32508 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32509 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32510 : CCCTAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32511 : CCATAGGACC-ACTCTCTCAC-TG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32512 : CCACAGAACC-TCTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32513 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32515 : CCATAGGACC-ACACTCTCACCTG-----------------CGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32516 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32517 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32518 : CCATAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAG
gi|32519 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAG
gi|32520 : CCATAGGACC-ACCCTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCC-ACTCTTTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32522 : CCCTATGACC-ACTCTCTCACCTG-----------------TTTGCAG--------ACC------TTCACCTGCTTGCAGCC-ATAGGACCAC
gi|32522 : TCACCTG-----------------CTTGCAGCC-ATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGAactctcacctgagtgcagcccatagga
gi|32523 : ccctatgaccactctctcacctgtttgcagacctCCCTAGGACC-ACTCTCTCACCTG-----------------AGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32524 : CCATAGGACC-AC-CTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32525 : CCCTATGACCCACTCTCTCACCTGTTTTGCAGACCTTCCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32526 : CCCTATGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAGACC
gi|32527 : CCCTATGACC-ACTCTCTTACCTG-----------------AGTACAATCCCTATGACCACTCGTCTCACTTGAG
gi|32528 : CATAGGACC-ACTCTCTCACCTA-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32529 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGA
gi|32530 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCAC-C-TCTCACTATTCTGTGGTCCACA
gi|32531 : TAGGACC-ACTCTCTCACCTG-----------------AGTGTGGACCACAGAACCACTC-TCTCACCTG
gi|32532 : TCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : -----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAGTG
blockSeqs : C TTTTGCAGACCTTCCTG T AG
blockSeqs : . . G AG
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . . . CT
blockSeqs : . . . AG
blockSeqs : . . . CT
blockSeqs : . . . CG
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . AG
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . AG
blockSeqs : . . . CT
blockSeqs : . . . CT
blockSeqs : . . . AG
blockSeqs : . . . TT
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . . . CT
blockSeqs : . . . TC
blockSeqs : . . . AG
blockSeqs : . . . AG
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
finalCons : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
Alignments
lowQualScore : 1 88888888888888888 0 2 22 0
lowQualScore : . ................. . . .. .
lowQualScore : 3 22222222222222222 2 4 33 8
consensus : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
Reference ( family-566 ) : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGNGTGCGGCCCATAGGACCAC
gi|32501 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32502 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32503 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCTGTAGGACCACTC-TCTCACCTGAGTGTGGACCACAGAA
gi|32504 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACCC-TCTCACCTGAGTGTGGACCATAGGA
gi|32505 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCAC-C-TCTCACCTGAGTGTGGACCATAGGA
gi|32506 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TTTCACCTGAGTGTGGACCATAGGA
gi|32507 : CCATAGGGCC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCAATCTTTTCACCTGAGTGTGGACCATAGGA
gi|32508 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32509 : CCATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32510 : CCCTAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAGTGCGGCCCACAGAA
gi|32511 : CCATAGGACC-ACTCTCTCAC-TG-----------------CTTGCAGCCCATAGGGCCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32512 : CCACAGAACC-TCTCTCTCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGCGTGCCGCCCATAGGA
gi|32513 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32514 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAG
gi|32515 : CCATAGGACC-ACACTCTCACCTG-----------------CGTGCCGCCCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32516 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32517 : CCACAGAACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTG
gi|32518 : CCATAGGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTAGGACCACTC-TCTCACCTGAG
gi|32519 : CCATAGGACC-ACACTCTCACCTG-----------------AGTGCAGCCCATAGGACCACTC-TCTCA-CTGCTTGCAGCCCATAG
gi|32520 : CCATAGGACC-ACCCTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32521 : CCATAGGGCC-ACTCTTTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32522 : CCCTATGACC-ACTCTCTCACCTG-----------------TTTGCAG--------ACC------TTCACCTGCTTGCAGCC-ATAGGACCAC
gi|32522 : TCACCTG-----------------CTTGCAGCC-ATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGAactctcacctgagtgcagcccatagga
gi|32523 : ccctatgaccactctctcacctgtttgcagacctCCCTAGGACC-ACTCTCTCACCTG-----------------AGTGCGGCCCACAGAACCTCTC-TCTCACCTGCTTGCAGCCCATAGGA
gi|32524 : CCATAGGACC-AC-CTCTCACCTG-----------------AGTGTGGACCATAGGACCACTC-TCTCACCTGCTTGCAGCCTGTAGGACCAC
gi|32525 : CCCTATGACCCACTCTCTCACCTGTTTTGCAGACCTTCCTGCTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32526 : CCCTATGACC-ACTCTCTCACCTG-----------------AGTACAATCCCTATGACCACTC-TCTCACCTGTTTGCAGACC
gi|32527 : CCCTATGACC-ACTCTCTTACCTG-----------------AGTACAATCCCTATGACCACTCGTCTCACTTGAG
gi|32528 : CATAGGACC-ACTCTCTCACCTA-----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAG
gi|32529 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCACTC-TCTCACCTACTTGCAGCCCATAGGA
gi|32530 : CATAGGACC-ACTCTCTCACCTG-----------------CTTGCAGCACATAGGACCAC-C-TCTCACTATTCTGTGGTCCACA
gi|32531 : TAGGACC-ACTCTCTCACCTG-----------------AGTGTGGACCACAGAACCACTC-TCTCACCTG
gi|32532 : TCACCTG-----------------CTTGCAGCCCATAGGACCACAC-TCTCACCTGAGTGCAGCCCATAGGA
gi|32533 : -----------------CTTGCAGCCCATAGGACCACTC-TCTCACCTGAGTG