lowQualScore : 11 1111111111111
lowQualScore : 1 3 1 111 1 1 22 666666 1 1 1 0000000000000 5
lowQualScore : . . . ... . . .. ...... . . . ............. .
lowQualScore : 0 1 0 777 0 0 55 111111 0 0 0 6666666666666 0
consensus : ACCA-GCGGCACGTCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GAAGA---GA-C------CCCCCGGGGGAC-CAGTGCA
Reference ( gi|43753 ) : ACCA-GCGGCACATCT-GTG---TA-T-A-GCAA-----GAT-ATA-G-GAAGA---AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43755 : ACCA-GCGGCACATCT-GTG---TA-T-A-GCAA-----GAT-ATA-G-GAAGA---AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43754 : ACCA-GCGGCACATCT-GTG---TA-T-A-GCAA-----GAT-ATA-G-GAAGA---AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43756 : ACCA-GCGGCACGTCT-GTG---TA-T-A-GCAA-----TAT-ATA-G-GAAGA---GG-T------CCCCCGGG
gi|43757 : ACCA-GCGGCACGTCT-GTG---TA-T-A-CCAA-----TGT-ATA-G-GAAGA---AA-C------CCCCC
gi|43758 : ACCA-GCGGCACGTCT-GTG---TA-T-A-CCAA-----AAT-ATA-G-GAAGA---GA-C------CCCTC
gi|43759 : ACCA-GCGGGACGTCT-GTG---TA-T-A-CCAA-----AAT-ATA-G-GAAGA---GA-C------CCCC---GGGCC-TATTGCA
gi|43760 : ACCA-GCGGCACGTCT-GTA---TA-T-A-GCAA-----TGT-ATA-G-GAAGA---GG-T------CCCCCCGGGCAC-TGGT
gi|43761 : ACCA-GCGGCACGTCT-GTG---TA-T-A-GCAA-----TAT-ATA---GAAGA---GG-T------CCCCCGG
gi|43762 : ACCA-GCGGCACGTCT-GTG---TA-T-A-CCAA-----TGT-ATA-G-GAAGA---AC-C------CCCCC
gi|43763 : ACCA-GCGGGACGTCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GAAGA---GA-C------ACCCC
gi|43764 : ACCA-GCGGCACGTCT-ATG---TA-T-A-CCAATATATAAT-ATA-G-GAAGA---GA-C------CTCCCGGGG
gi|43765 : ACCA-GCGGCACGTCT-GTG---T--T-A-GCAA-----TAT-ATA-G-GAAGA---GG--------TCCCCGGGTGAC-
gi|43766 : ACCA-GCGGCACGTCT-GTG---TA-T-A-CCAA-----TGT-ATA-G-GAAGG---AC-C------CCCCC
gi|43768 : ACCA-GCGGTACGTCT-GTG---TA-T-A--CAA-----GAT-ATA-G-GAAGG---AA-C------C
gi|43769 : ACCA-GCG-CACGTCT-GTG---T--T-A-GCAA-----TAT-ATA-G-GAAGA---GGTC------CCCCCGGGG
gi|43771 : ACCA-GCGGGACGTCT-GTA---TA-T-A-CCAA-----GAT-ATA-G-GAAGA---GA-CACCCCACCCCCCGGGTACGTAGTGTA
gi|43770 : ACCA-GCGG-ACGTCT-GTG---TA-T-AAGCAA-----TAT-ATA-G-GAAGA---GGTC------CCCCCGGG
gi|43772 : ACCA-GCGGCACGTCT-GTGTTTTA-T-A-GCAAT----TAT-ATA-G-GAAGA---GGTC------CCCCCGGG
gi|43773 : ACCA-GCGGGACGTCT-GCG---TA-T-A-CCAA-----AAT-ATA-G-GAAGA-------------CCAACGGGGTAC-CAGT
gi|43774 : ACCA-GCGGCACGTCT-GTG---TA-T-ACCCAA-----TGT-AT--G-GAAGA---AA-CT-----CCCCCGGG
gi|43776 : ACGA-GCGGGACATTT-GTG---TT-T-A-CCAA-----GAT-ATA-G-GAAGA---CA-C------CTCCGGGGGG
gi|43777 : ACCA-CCGGGACATCT-GTG---AA-T-A-CCAA-----GAT-ATA-G-GAAGA---GA-CCCTT--CCCCCTGGG
gi|43778 : ACCA-GCGGGAAGTCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-AAGGAGACAA-C------CCCCC
gi|43779 : ACCA-GTGGGACGTCT-GTG---TA-T-A-CCAA-----AAT-ATA-G-AAAG-----A-C------CCCCC
gi|43780 : ACCA-GCGGGACGTCT-GTA---TA-T-A-CCAA-----GAA-ATA-G-CAAGAAT-AA-C------CCCCC
gi|43781 : ACCA-GCGGCACGTCT-GTG---TA-T-ACCCAA-----GATAATA---GAAGA---GA-C------CTCC
gi|43767 : ACCA-GCGGCACGTCTGGTG---TA-T-A-CCAA-----T-T-ATA-G-GAAG-----A-C------CCCCC
gi|43782 : ACCAAGCGGCACGTCT-GTG---TATT-A-CCAA-----TGT-ATA-G-GAAGG---AC-C------CCCCC
gi|43775 : ACCA-GCGGCACGTCT-GT-----A-T-A-CCCA-----ATT-GTATG-GAAGA---AA-C------CCCCCGGG
gi|43783 : CCA-GCGACACGTCT-GTG---TA-T-A-CCAA-----TAT-ATA-G-GAAGA---TA-C------CCCCCTGGGGA
gi|43784 : CCA-GCGGTACGTCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GAAG-----A-C------CCCC
gi|43785 : CCA-GCGGTACATCT-GGG---TA-T-A-CCAC-----GAT-ATA-G-GAAGA---AC-C------CC
gi|43786 : CCA-GCGGTACGTCT-GTG---TA-T-A-CCGA-----AAT-ATA-G-GAAGA---CA--------CACCAGGGGCAC-
gi|43787 : CCA-GCAGCACG-CT-GTG---TA-T-A--CAA-----GAT-ATA-G-GAAG-----A-C------CCCCC
gi|43788 : CCA-GTA-CACGTCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GAAG-----A-C------CCCCC
gi|43789 : CCA-GCAGCACGCCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GTAGAT--TA-C------CCCC
gi|43791 : CCA-GTGGCACATCT-ATC---TA-TTA-GTA--------T-ATA-G-GAAGT---AA-C------CCCCCCGGGG
gi|43790 : CCA-GTGGGACGTCT-GTG---TA-A-A-CCAA-----GAT-ATA-G-AAAGA---CA-C------CCTCC
gi|43792 : CA-GCGGCACGTCT-GTG---TA-T-A-GCA-------AT-ATA-GTGAAGA---GG-T------CCCCGGGTGGA
gi|43793 : GCACGTCT-GTA---TA-T-A-CCAA-----TAT-ATA-G-GAAGA---GA-C------CCCC-GGGG
gi|43794 : CATCT-GTG---TA-T-A-CCAA-----GAT-ATA-G-GAAG-----A-C------CCCCC
gi|43795 : CACCT-GTG---CA-T-A-CCAA-----GAT-ATA-G-GAAGA---CA-CACCA--CCCCCGGGGG
Alignments
lowQualScore : 1 0 111 0 0 0 666666 0 1 0 222 2 888888 4
lowQualScore : . . ... . . . ...... . . . ... . ...... .
lowQualScore : 0 9 666 9 9 9 333333 9 9 9 555 8 888888 4
consensus : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
Reference ( family-458 ) : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
gi|43753 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43754 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43755 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43756 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA-G-GAAGA--GG-T------CCCCCGGG
gi|43757 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA--AA-C------CCCCC
gi|43758 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCTC
gi|43759 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCC---GGGCC-TATTGCA
gi|43760 : ACCA-GCGGCACGTCT-GTA---TA-TA-G-CAA-----TGT-ATA-G-GAAGA--GG-T------CCCCCCGGGCAC-TGGT
gi|43761 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA---GAAGA--GG-T------CCCCCGG
gi|43762 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA---A-C------CCCCC
gi|43763 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------ACCCCc
gi|43764 : ACCA-GCGGCACGTCT-ATG---TA-TA-C-CAATATATAAT-ATA-G-GAAGA--GA-C------CTCCCGGGG
gi|43765 : ACCA-GCGGCACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GG--------TCCCCGGGTGAC-
gi|43766 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43767 : ACCA-GCGGCACGTCTGGTG---TA-TA-C-CAA-----T-T-ATA-G-GA--A--GA-C------CCCCCc
gi|43768 : ACCA-GCGGTACGTCT-GTG---TA-TA---CAA-----GAT-ATA-G-GAAGG--AA-C------C
gi|43769 : ACCA-GCG-CACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGGG
gi|43770 : ACCA-GCGG-ACGTCT-GTG---TA-TA-AGCAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43771 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CACCCCACCCCCCGGGTACGTAGTGTA
gi|43772 : ACCA-GCGGCACGTCT-GTGTTTTA-TA-G-CAAT----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43773 : ACCA-GCGGGACGTCT-GCG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA------------CCAACGGGGTAC-CAGT
gi|43774 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CCA------AT-GTATG-GAAGA--AA-CT-----CCCCCGGG
gi|43775 : ACCA-GCGGCACGTC---TG---TA-TA-C-CCA-----ATT-GTATG-GAAGA--AA-C------CCCCCGGG
gi|43776 : ACGA-GCGGGACATTT-GTG---TT-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-C------CTCCGGGGGG
gi|43777 : ACCA-CCGGGACATCT-GTG---AA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CCCTT--CCCCCTGGG
gi|43778 : ACCA-GCGGGAAGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-AAGGA--GA-CAA----CCCCC
gi|43779 : ACCA-GTGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G---AAA--GA-C------CCCCCc
gi|43780 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAA-ATA-G-CAAGAATAA-C------CCCCC
gi|43781 : ACCA-GCGGCACGTCT-GTG---TA-TACC-CAA-----GATAATA---GAAGA--GA-C------CTCC
gi|43782 : ACCAAGCGGCACGTCT-GTG---TATTA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43783 : CCA-GCGACACGTCT-GTG---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--TA-C------CCCCCTGGGGAc
gi|43784 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCC
gi|43785 : CCA-GCGGTACATCT-GGG---TA-TA-C-CAC-----GAT-ATA-G-GAAGA---A-C------CCC
gi|43786 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CGA-----AAT-ATA-G-GAAGA--CA--------CACCAGGGGCAC-
gi|43787 : CCA-GCAGCACG-CT-GTG---TA-TA-C--AA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43788 : CCA-GTA-CACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43789 : CCA-GCAGCACGCCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GTAGAT-TA-C------CCCC
gi|43790 : CCA-GTGGGACGTCT-GTG---TA-AA-C-CAA-----GAT-ATA-G-AAAGA--CA-C------CCTCC
gi|43791 : CCA-GTGGCACATCT-ATC---TA-T----TAG-----TAT-ATA-G-GAAGT--AA-C------CCCCCCGGGG
gi|43792 : CA-GCGGCACGTCT-GTG---TA-TA-G-CA-------AT-ATA-GTGAAGA--GG-T------CCCCGGGTGGA
gi|43793 : GCACGTCT-GTA---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--GA-C------CCCC-GGGG
gi|43794 : CATCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43795 : CT-GTG---CA-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-CACCA--CCCCCGGGGG
Alignments
lowQualScore : 1 0 111 0 0 0 666666 0 1 0 222 2 888888 4
lowQualScore : . . ... . . . ...... . . . ... . ...... .
lowQualScore : 0 9 666 9 9 9 333333 9 9 9 555 8 888888 4
consensus : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
Reference ( family-458 ) : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
gi|43753 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43754 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43755 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43756 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA-G-GAAGA--GG-T------CCCCCGGG
gi|43757 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA--AA-C------CCCCC
gi|43758 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCTC
gi|43759 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCC---GGGCC-TATTGCA
gi|43760 : ACCA-GCGGCACGTCT-GTA---TA-TA-G-CAA-----TGT-ATA-G-GAAGA--GG-T------CCCCCCGGGCAC-TGGT
gi|43761 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA---GAAGA--GG-T------CCCCCGG
gi|43762 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA---A-C------CCCCC
gi|43763 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------ACCCCc
gi|43764 : ACCA-GCGGCACGTCT-ATG---TA-TA-C-CAATATATAAT-ATA-G-GAAGA--GA-C------CTCCCGGGG
gi|43765 : ACCA-GCGGCACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GG--------TCCCCGGGTGAC-
gi|43766 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43767 : ACCA-GCGGCACGTCTGGTG---TA-TA-C-CAA-----T-T-ATA-G-GA--A--GA-C------CCCCCc
gi|43768 : ACCA-GCGGTACGTCT-GTG---TA-TA---CAA-----GAT-ATA-G-GAAGG--AA-C------C
gi|43769 : ACCA-GCG-CACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGGG
gi|43770 : ACCA-GCGG-ACGTCT-GTG---TA-TA-AGCAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43771 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CACCCCACCCCCCGGGTACGTAGTGTA
gi|43772 : ACCA-GCGGCACGTCT-GTGTTTTA-TA-G-CAAT----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43773 : ACCA-GCGGGACGTCT-GCG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA------------CCAACGGGGTAC-CAGT
gi|43774 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CCA------AT-GTATG-GAAGA--AA-CT-----CCCCCGGG
gi|43775 : ACCA-GCGGCACGTC---TG---TA-TA-C-CCA-----ATT-GTATG-GAAGA--AA-C------CCCCCGGG
gi|43776 : ACGA-GCGGGACATTT-GTG---TT-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-C------CTCCGGGGGG
gi|43777 : ACCA-CCGGGACATCT-GTG---AA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CCCTT--CCCCCTGGG
gi|43778 : ACCA-GCGGGAAGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-AAGGA--GA-CAA----CCCCC
gi|43779 : ACCA-GTGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G---AAA--GA-C------CCCCCc
gi|43780 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAA-ATA-G-CAAGAATAA-C------CCCCC
gi|43781 : ACCA-GCGGCACGTCT-GTG---TA-TACC-CAA-----GATAATA---GAAGA--GA-C------CTCC
gi|43782 : ACCAAGCGGCACGTCT-GTG---TATTA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43783 : CCA-GCGACACGTCT-GTG---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--TA-C------CCCCCTGGGGAc
gi|43784 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCC
gi|43785 : CCA-GCGGTACATCT-GGG---TA-TA-C-CAC-----GAT-ATA-G-GAAGA---A-C------CCC
gi|43786 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CGA-----AAT-ATA-G-GAAGA--CA--------CACCAGGGGCAC-
gi|43787 : CCA-GCAGCACG-CT-GTG---TA-TA-C--AA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43788 : CCA-GTA-CACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43789 : CCA-GCAGCACGCCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GTAGAT-TA-C------CCCC
gi|43790 : CCA-GTGGGACGTCT-GTG---TA-AA-C-CAA-----GAT-ATA-G-AAAGA--CA-C------CCTCC
gi|43791 : CCA-GTGGCACATCT-ATC---TA-T----TAG-----TAT-ATA-G-GAAGT--AA-C------CCCCCCGGGG
gi|43792 : CA-GCGGCACGTCT-GTG---TA-TA-G-CA-------AT-ATA-GTGAAGA--GG-T------CCCCGGGTGGA
gi|43793 : GCACGTCT-GTA---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--GA-C------CCCC-GGGG
gi|43794 : CATCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43795 : CT-GTG---CA-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-CACCA--CCCCCGGGGG
blockSeqs : A TTT TATATA T ATA T ACCCCA G
blockSeqs : . . TT T TT T CCTT .
blockSeqs : . . G . A T ACCA .
blockSeqs : . . G . A . AA .
blockSeqs : . . T . G . T .
blockSeqs : . . T . A . . .
blockSeqs : . . A . G . . .
blockSeqs : . . A . G . . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . G . G . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . G . A . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . G . G . .
blockSeqs : . . A . G . .
blockSeqs : . . A . A . .
blockSeqs : . . G . A . .
blockSeqs : . . G . C . .
blockSeqs : . . G . G . .
blockSeqs : . . A . G . .
blockSeqs : . . G . G . .
blockSeqs : . . G . G . .
blockSeqs : . . T . G . .
blockSeqs : . . T . T . .
blockSeqs : . . G . G . .
blockSeqs : . . G . C . .
blockSeqs : . . A . G . .
blockSeqs : . . G . G . .
blockSeqs : . . G . C . .
blockSeqs : . . G . A . .
blockSeqs : . . G . G . .
blockSeqs : . . T . G . .
blockSeqs : . . T . G . .
blockSeqs : . . G . C . .
blockSeqs : . G . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
finalCons : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
Alignments
lowQualScore : 1 0 111 0 0 0 666666 0 1 0 222 2 888888 4
lowQualScore : . . ... . . . ...... . . . ... . ...... .
lowQualScore : 0 9 666 9 9 9 333333 9 9 9 555 8 888888 4
consensus : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
Reference ( family-458 ) : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------CCCCCGGGGGAC-CAGTGCA
gi|43753 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43754 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43755 : ACCA-GCGGCACATCT-GTG---TA-TA-G-CAA-----GAT-ATA-G-GAAGA--AA-C------CCCCCGGGGGAC-CAGTGCA
gi|43756 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA-G-GAAGA--GG-T------CCCCCGGG
gi|43757 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA--AA-C------CCCCC
gi|43758 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCTC
gi|43759 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA--GA-C------CCCC---GGGCC-TATTGCA
gi|43760 : ACCA-GCGGCACGTCT-GTA---TA-TA-G-CAA-----TGT-ATA-G-GAAGA--GG-T------CCCCCCGGGCAC-TGGT
gi|43761 : ACCA-GCGGCACGTCT-GTG---TA-TA-G-CAA-----TAT-ATA---GAAGA--GG-T------CCCCCGG
gi|43762 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAGA---A-C------CCCCC
gi|43763 : ACCA-GCGGGACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-C------ACCCCc
gi|43764 : ACCA-GCGGCACGTCT-ATG---TA-TA-C-CAATATATAAT-ATA-G-GAAGA--GA-C------CTCCCGGGG
gi|43765 : ACCA-GCGGCACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GG--------TCCCCGGGTGAC-
gi|43766 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43767 : ACCA-GCGGCACGTCTGGTG---TA-TA-C-CAA-----T-T-ATA-G-GA--A--GA-C------CCCCCc
gi|43768 : ACCA-GCGGTACGTCT-GTG---TA-TA---CAA-----GAT-ATA-G-GAAGG--AA-C------C
gi|43769 : ACCA-GCG-CACGTCT-GTG---T--TA-G-CAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGGG
gi|43770 : ACCA-GCGG-ACGTCT-GTG---TA-TA-AGCAA-----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43771 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CACCCCACCCCCCGGGTACGTAGTGTA
gi|43772 : ACCA-GCGGCACGTCT-GTGTTTTA-TA-G-CAAT----TAT-ATA-G-GAAGA--GGTC------CCCCCGGG
gi|43773 : ACCA-GCGGGACGTCT-GCG---TA-TA-C-CAA-----AAT-ATA-G-GAAGA------------CCAACGGGGTAC-CAGT
gi|43774 : ACCA-GCGGCACGTCT-GTG---TA-TA-C-CCA------AT-GTATG-GAAGA--AA-CT-----CCCCCGGG
gi|43775 : ACCA-GCGGCACGTC---TG---TA-TA-C-CCA-----ATT-GTATG-GAAGA--AA-C------CCCCCGGG
gi|43776 : ACGA-GCGGGACATTT-GTG---TT-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-C------CTCCGGGGGG
gi|43777 : ACCA-CCGGGACATCT-GTG---AA-TA-C-CAA-----GAT-ATA-G-GAAGA--GA-CCCTT--CCCCCTGGG
gi|43778 : ACCA-GCGGGAAGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-AAGGA--GA-CAA----CCCCC
gi|43779 : ACCA-GTGGGACGTCT-GTG---TA-TA-C-CAA-----AAT-ATA-G---AAA--GA-C------CCCCCc
gi|43780 : ACCA-GCGGGACGTCT-GTA---TA-TA-C-CAA-----GAA-ATA-G-CAAGAATAA-C------CCCCC
gi|43781 : ACCA-GCGGCACGTCT-GTG---TA-TACC-CAA-----GATAATA---GAAGA--GA-C------CTCC
gi|43782 : ACCAAGCGGCACGTCT-GTG---TATTA-C-CAA-----TGT-ATA-G-GAAG---GA-C------CCCCC
gi|43783 : CCA-GCGACACGTCT-GTG---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--TA-C------CCCCCTGGGGAc
gi|43784 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCC
gi|43785 : CCA-GCGGTACATCT-GGG---TA-TA-C-CAC-----GAT-ATA-G-GAAGA---A-C------CCC
gi|43786 : CCA-GCGGTACGTCT-GTG---TA-TA-C-CGA-----AAT-ATA-G-GAAGA--CA--------CACCAGGGGCAC-
gi|43787 : CCA-GCAGCACG-CT-GTG---TA-TA-C--AA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43788 : CCA-GTA-CACGTCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43789 : CCA-GCAGCACGCCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GTAGAT-TA-C------CCCC
gi|43790 : CCA-GTGGGACGTCT-GTG---TA-AA-C-CAA-----GAT-ATA-G-AAAGA--CA-C------CCTCC
gi|43791 : CCA-GTGGCACATCT-ATC---TA-T----TAG-----TAT-ATA-G-GAAGT--AA-C------CCCCCCGGGG
gi|43792 : CA-GCGGCACGTCT-GTG---TA-TA-G-CA-------AT-ATA-GTGAAGA--GG-T------CCCCGGGTGGA
gi|43793 : GCACGTCT-GTA---TA-TA-C-CAA-----TAT-ATA-G-GAAGA--GA-C------CCCC-GGGG
gi|43794 : CATCT-GTG---TA-TA-C-CAA-----GAT-ATA-G-GA--A--GA-C------CCCCC
gi|43795 : CT-GTG---CA-TA-C-CAA-----GAT-ATA-G-GAAGA--CA-CACCA--CCCCCGGGGG