lowQualScore : 1111
lowQualScore : 1 33 3 1 3 22 1 4444 6666 1 1 1 111 1 2222 1 2222 444 2 2 2 4
lowQualScore : . .. . . . .. . .... .... . . . ... . .... . .... ... . . . .
lowQualScore : 1 66 4 0 0 44 0 9999 1111 9 0 0 777 0 6666 9 0000 666 1 1 1 1
consensus : ATAGCCATTT-T--GAATTTT-GC-A--CC-A----T----GG-G-G-GG---CA-T---NTA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
Reference ( gi|56994 ) : ATAGCCATTT-T--GGATTTT-GC-A--CC-A----T----GG-G-G-GG---CA-T---ATA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56995 : ATAACCATTT-T--GAATTTT-GC-A--CC-A----T----GG-G-G-GG---CA-T---TTA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56996 : ATAGCCATTT-T--GAATTTT-GC-A--CC-A----T----GG-G-G-GG---CA-T---TTA-TGT----TTCA-C-AAA-CA-TTT-C-TTGTT
gi|56997 : ATAGCAATTT-T--GGATTTT-GC-A--CC-A----T----GT-G-G-GG---CA-T---GTA-TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|56999 : ATAGCCATTT-T--GGATTTG-GC-A--CC-A----T----GG-G-G-G----CA-T---GTA-TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|56998 : ATAGCCATTT-T--G-ATTTT-GT-T--CC-A----C----GG-G-G-GG---CA-T---GTA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57002 : ATAGCCATTT-T--GAATTTT-GC-A--CC-A----T-----G-G-G-GG---CA-T---TTA-TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57001 : ATAGCCATTT-T--GAATTTT-GC-A--CC-A----T-----G-G-G-GG---CA-T---TTA-TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57000 : ATAGCCATTT-T--GAATTTT-GC-A--CC-A----T-----G-G-G-GG---CA-T---TTA-TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57004 : ATAGCCATTT-T--G-ATTTT-GC-A--CC-A----T----GG-G-G-GG---CATT---TTA-TGT----TTCT-C-AAACCA-TTT-T-CTGTT
gi|57006 : ATAGCCATTT-T--G-ATTTT-GC-A--CC-A----TG---GG-G-G-GG---CA-T---TTA-TGT----TTC--C-AAA--A-TTT-C-TTGTT
gi|57003 : ATAGCCATTT-T--GAATTCT-GCCA--CC-AATTTT----GG-G-G-GGTGGCA-T---TTA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57007 : ATAGCCAATT-T--GGATTTT-GC-A--CC-A----TGGAGGG-G-G-GG---GG-G---GTA-TGT----TTCT-C-AAA-CA-TCT-C-TTGTT
gi|57005 : ATAGGCATTT----GAATTTT-G--A--CC-A----T----GG-G-G-GG---CA-T---TTA-TGT----TTCT-C-AAA-CA--TT-C-TTGTT
gi|57009 : ATAGCTATTT-T--AGATTTT-GC-A--CC-A----T----TT-G-G-GG---CA-T---GTA-TAT----TTTT-G-AAA-CA-TTT-C-ATG
gi|57011 : ATAGCCATTT----GGATTT--GC-AGACC-A----T----GG-G-G-GT---CA-T---TTA-TGT----TTCT-C-AAATCATTTT-C-TTGTT
gi|57010 : ATGGCTAATT-T--AGATTT--GC-A--CC-A----T----GG-G-C-GG---TG-T---GTA-TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57008 : ATAGCCATTG----GGATTTTTGC-A--CC-A----T----GG-G-A-TG---CG-C---GTA-TGT----TTTT-G-AAA-CA-TTT-C-TTGTT
gi|57012 : ATGGCTAATT-T--AGATTT--GC-A--CC-A----T----GG-G-G-G----TG-T---GTA-TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57013 : ATAGCCATTT-T--GGATTTT-GC-A--CC-A----TGG--GG-G-G-GG---GG-G---GTA-TCT----TTAT---GAA-CA-TTT-C-TTGTT
gi|57014 : ATAACCCTTT-T--CAATTTT-GC-A--CC-A----T----AG-G-G-A----CA-T---ATA-CAT----TTTA-C-AAA-CA-TTT-C-TTGTT
gi|57017 : ATAACCCTTT-T--CAATTTT-GC-A--CC-C----TGGG-GG-G-G-GG---CA-T---ACA-TGT----TT-T-C-AAA-CA-TAT-C-TT
gi|57015 : ATGGCCATTT-T--CAATTTT-GC-A--CCCA----C----GG-G-GAGG---GG-G---GTA-TGT----TTTA-C-AAA-CA-TCT-C-TTGTT
gi|57019 : ATAACCATTT-T--GG-TTTT-GC-A--CA-A----T----GG-G-G-GG---C--T---G-A-TTT----TGCT-G-AAA-CA-TTT-C-
gi|57020 : ATAACCATTT-T--GGTTTTT-GC-A--CA-AAC--T----GG-G-G-G-------T---GTA-TTT----TGCT-G-AAA-CA-TTT-C-TTG
gi|57018 : ATAACCATTT-T--GTATTTT-GC-A--CC-A----T----GG-G-A-GG---CG-T---GTT-TGT----ATCT-
gi|57016 : ATGGCCATTT-T--CAATTTT-GC-AC-CC-A----C----GG-G-G-AG---GG-G---GTA-TGT----TTTA-CAAAA-CA-TCT-C-TTGTT
gi|57021 : ATAGCCCCTT-T--TAATTT--GC-A--CC-A----T----GG-G-G-GG---CA-T----TT-TG-----TTCT----AA-C--TTT-C-TTGTT
gi|57023 : ATAGCCATTT-TT-GAATTTT-GC-A--CC-G----C----GGTG-G-GG---GA-T---TTA-TG-----TTCT-C-
gi|57022 : ATAGCCATTT-TT-GAATTTT-GC-A--CC-G----C----GGTG-G-GG---GA-T---TTA-TG-----TTCT-C-
gi|57024 : TAGCCATTT-CTGGGATTTG-GC-A--CC-A----T----TG-G-G-GA---CA-T---GTA-TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57025 : TAGCCATTT-A--GAATTTT-GCAA--CC-ATG--T----GG-G-G-GG---CA-TTTAATT-TGTTCTCTTCT-C--AA-CA-TTTAC-TTGTT
gi|57026 : AGCCATTT-T--GGATTTT-GC-A--CC-A----T----GG-G-A-GA---CA-T---GTA-TGT----TTCT-A-AAA-CA-TTT-C-ATG
gi|57027 : AGCCATTTGT--GAATTTT-G--A--CC-A----T----GG-G-G-G----CA-T---TTA-TGT----TTCT-C-AAA-CA-TTTCC-TTGTT
gi|57028 : GCCATTT-G--GAATTTG-GC-A--CC-A----T-------G-G-GG---CA-T---TGA-TGT----TCCTCC-AAA-CACTTT-C-TTTTT
gi|57029 : CCATTT-T--GAATTTT-GC-A---C-A----T----GG-G-G-GG---CA-T---TTAGTGT----TT-T-C--AA-CA-TTT-CTTTGTT
gi|57030 : CATTT-T--GAATTCT-GCCA--CC-A----T----GG-GTG-GG---CT-T----TA-TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57033 : --GAATTTG-GC-A--C--A----T----GG-G-G-GG---CA-T---TTAATGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57032 : ATTTT--C-A--CC-A----T----GG-G-G-GG---CA-T---TTA-TGT----TTCT-C-AAA-CA-TTT-C-ATGTT
gi|57031 : ttgacATTTT-GC-A--CC-A----C----AG-G-G-GA---CA-T---ACA-TGT----TTCT-G-AAA-CT-TTT-C-TTGTT
gi|57034 : tctaa-GC-A--CC-A----T----GG-G-G-GG---CA-T---TTA-TGT----TTCT-C-AAA-CC-ATT-C-TTGTT
gi|57035 : ----GG-G-G-GG---CA-T---GTA-TGT----TTCT-A-AAA-CA-TTT-C-TTGT
gi|57036 : -G-G-GG---CA-T---GTA-TGT----TTCT-C-AAA-CA-CTT-C-TTGTT
Alignments
lowQualScore : 1 33 1 2 33 4444 6666 1 0 0 111 0 1 333 2222 444 2 2 2 4
lowQualScore : . .. . . .. .... .... . . . ... . . ... .... ... . . . .
lowQualScore : 0 44 0 9 33 8888 0000 9 9 9 666 9 0 555 0000 333 0 0 0 0
consensus : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
Reference ( family-456 ) : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56994 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TATA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56995 : ATAACCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56996 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCA-C-AAA-CA-TTT-C-TTGTT
gi|56997 : ATAGCAATTT-T--GG-ATTTTGC-A--CCA----T----GT-G-G-GG---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|56998 : ATAGCCATTT-T--GA--TTTTGT-T--CCA----C----GG-G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56999 : ATAGCCATTT-T--GG-ATTTGGC-A--CCA----T----GG-G-G-G----CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57000 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57001 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57002 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57003 : ATAGCCATTT-T--GA-ATTCTGCCA--CCAATTTT----GG-G-G-GGTGGCA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57004 : ATAGCCATTT-T--GA--TTTTGC-A--CCA----T----GG-G-G-GG---CATTTTA---TGT----TTCT-C-AAACCA-TTT-T-CTGTT
gi|57005 : ATAGGCATTT----GA-ATTTTG--A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA--TT-C-TTGTT
gi|57006 : ATAGCCATTT-T--G--ATTTTGC-A--CCA----TG---GG-G-G-GG---CA-TTTA---TGT----TTC--C-AAA--A-TTT-C-TTGTT
gi|57007 : ATAGCCAATT-T--GG-ATTTTGC-A--CCA----TGGAGGG-G-G-GG---GG-GGTA---TGT----TTCT-C-AAA-CA-TCT-C-TTGTT
gi|57008 : ATAGCCATTG-G--GA-TTTTTGC-A--CCA----T----GG-G-A-TG---CG-CGTA---TGT----TTTT-G-AAA-CA-TTT-C-TTGTT
gi|57009 : ATAGCTATTT-T--AG-ATTTTGC-A--CCA----T----TT-G-G-GG---CA-TGTA---TAT----TTTT-G-AAA-CA-TTT-C-ATG
gi|57010 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-C-GG---TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57011 : ATAGCCATTT-G--GA---TTTGC-AGACCA----T----GG-G-G-GT---CA-TTTA---TGT----TTCT-C-AAATCATTTT-C-TTGTT
gi|57012 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-G-G----TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57013 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----TGG--GG-G-G-GG---GG-GGTA---TCT----TTAT---GAA-CA-TTT-C-TTGTT
gi|57014 : ATAACCCTTT-T--CA-ATTTTGC-A--CCA----T-----A-G-G-GA---CA-TATA---CAT----TTTA-C-AAA-CA-TTT-C-TTGTT
gi|57015 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-GAGG---GG-GGTA---TGT----TTTA-C-AAA-CA-TCT-C-TTGTT
gi|57016 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-G-AG---GG-GGTA---TGT----TTTA-CAAAA-CA-TCT-C-TTGTT
gi|57017 : ATAACCCTTT-T--CA-ATTTTGC-A--CCC----TGGG-GG-G-G-GG---CA-TACA---TGT----TT-T-C-AAA-CA-TAT-C-TT
gi|57018 : ATAACCATTT-T--GT-ATTTTGC-A--CCA----T----GG-G-A-GG---CG-TGTT---TGT----ATCT-
gi|57019 : ATAACCATTT-T--GG--TTTTGC-A--CAA----T----GG-G-G-GG---C--TG-A---TTT----TGCT-G-AAA-CA-TTT-C-
gi|57020 : ATAACCATTT-T--GG-TTTTTGC-A--CAAAC--T----GG-G-G-G-------TGTA---TTT----TGCT-G-AAA-CA-TTT-C-TTG
gi|57021 : ATAGCCCCTT-T--TA-ATTT-GC-A--CCA----T----GG-G-G-GG---CA-TTT----TG-----TTCT----AA-C--TTT-C-TTGTT
gi|57022 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57023 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57024 : TAGCCATTT-CTGGG-ATTTGGC-A--CCA----T----TG-G-G-GA---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57025 : TAGCCATTT-A--GA-ATTTTGCAA--CCATG--T----GG-G-G-GG---CA-TTTAATTTGTTCTCTTCT-C--AA-CA-TTTAC-TTGTT
gi|57026 : AGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-A-GA---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-ATG
gi|57027 : AGCCATTTGT--GA-ATTTTG--A--CCA----T----GG-G-G-G----CA-TTTA---TGT----TTCT-C-AAA-CA-TTTCC-TTGTT
gi|57028 : GCCATTT-G--GA-ATTTGGC-A--CCA----T-------G-G-GG---CA-TTGA---TGT----TCCTCC-AAA-CACTTT-C-TTTTT
gi|57029 : CCATTT-T--GA-ATTTTGC-A---CA----T----GG-G-G-GG---CA-TTTAG--TGT----TT-T-C--AA-CA-TTT-CTTTGTT
gi|57030 : CATTT-T--GA-ATTCTGCCA--CCA----T----GG-GTG-GG---C--TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57031 : TC-T--AA-ATTTTGC-A--CCA----C----AG-G-G-GA---CA-TACA---TGT----TTCT-G-AAA-CT-TTT-C-TTGTT
gi|57032 : T-T--GACATTTT-C-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-ATGTT
gi|57033 : --GA-ATTTGGC-A--C-A----T----GG-G-G-GG---CA-TTTAA--TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57034 : GC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CC-ATT-C-TTGTT
gi|57035 : ----GG-G-G-GG---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-TTGT
gi|57036 : -G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-CTT-C-TTGTT
Alignments
lowQualScore : 1 33 1 2 33 4444 6666 1 0 0 111 0 1 333 2222 444 2 2 2 4
lowQualScore : . .. . . .. .... .... . . . ... . . ... .... ... . . . .
lowQualScore : 0 44 0 9 33 8888 0000 9 9 9 666 9 0 555 0000 333 0 0 0 0
consensus : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
Reference ( family-456 ) : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56994 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TATA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56995 : ATAACCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56996 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCA-C-AAA-CA-TTT-C-TTGTT
gi|56997 : ATAGCAATTT-T--GG-ATTTTGC-A--CCA----T----GT-G-G-GG---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|56998 : ATAGCCATTT-T--GA--TTTTGT-T--CCA----C----GG-G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56999 : ATAGCCATTT-T--GG-ATTTGGC-A--CCA----T----GG-G-G-G----CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57000 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57001 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57002 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57003 : ATAGCCATTT-T--GA-ATTCTGCCA--CCAATTTT----GG-G-G-GGTGGCA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57004 : ATAGCCATTT-T--GA--TTTTGC-A--CCA----T----GG-G-G-GG---CATTTTA---TGT----TTCT-C-AAACCA-TTT-T-CTGTT
gi|57005 : ATAGGCATTT----GA-ATTTTG--A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA--TT-C-TTGTT
gi|57006 : ATAGCCATTT-T--G--ATTTTGC-A--CCA----TG---GG-G-G-GG---CA-TTTA---TGT----TTC--C-AAA--A-TTT-C-TTGTT
gi|57007 : ATAGCCAATT-T--GG-ATTTTGC-A--CCA----TGGAGGG-G-G-GG---GG-GGTA---TGT----TTCT-C-AAA-CA-TCT-C-TTGTT
gi|57008 : ATAGCCATTG-G--GA-TTTTTGC-A--CCA----T----GG-G-A-TG---CG-CGTA---TGT----TTTT-G-AAA-CA-TTT-C-TTGTT
gi|57009 : ATAGCTATTT-T--AG-ATTTTGC-A--CCA----T----TT-G-G-GG---CA-TGTA---TAT----TTTT-G-AAA-CA-TTT-C-ATG
gi|57010 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-C-GG---TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57011 : ATAGCCATTT-G--GA---TTTGC-AGACCA----T----GG-G-G-GT---CA-TTTA---TGT----TTCT-C-AAATCATTTT-C-TTGTT
gi|57012 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-G-G----TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57013 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----TGG--GG-G-G-GG---GG-GGTA---TCT----TTAT---GAA-CA-TTT-C-TTGTT
gi|57014 : ATAACCCTTT-T--CA-ATTTTGC-A--CCA----T-----A-G-G-GA---CA-TATA---CAT----TTTA-C-AAA-CA-TTT-C-TTGTT
gi|57015 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-GAGG---GG-GGTA---TGT----TTTA-C-AAA-CA-TCT-C-TTGTT
gi|57016 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-G-AG---GG-GGTA---TGT----TTTA-CAAAA-CA-TCT-C-TTGTT
gi|57017 : ATAACCCTTT-T--CA-ATTTTGC-A--CCC----TGGG-GG-G-G-GG---CA-TACA---TGT----TT-T-C-AAA-CA-TAT-C-TT
gi|57018 : ATAACCATTT-T--GT-ATTTTGC-A--CCA----T----GG-G-A-GG---CG-TGTT---TGT----ATCT-
gi|57019 : ATAACCATTT-T--GG--TTTTGC-A--CAA----T----GG-G-G-GG---C--TG-A---TTT----TGCT-G-AAA-CA-TTT-C-
gi|57020 : ATAACCATTT-T--GG-TTTTTGC-A--CAAAC--T----GG-G-G-G-------TGTA---TTT----TGCT-G-AAA-CA-TTT-C-TTG
gi|57021 : ATAGCCCCTT-T--TA-ATTT-GC-A--CCA----T----GG-G-G-GG---CA-TTT----TG-----TTCT----AA-C--TTT-C-TTGTT
gi|57022 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57023 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57024 : TAGCCATTT-CTGGG-ATTTGGC-A--CCA----T----TG-G-G-GA---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57025 : TAGCCATTT-A--GA-ATTTTGCAA--CCATG--T----GG-G-G-GG---CA-TTTAATTTGTTCTCTTCT-C--AA-CA-TTTAC-TTGTT
gi|57026 : AGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-A-GA---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-ATG
gi|57027 : AGCCATTTGT--GA-ATTTTG--A--CCA----T----GG-G-G-G----CA-TTTA---TGT----TTCT-C-AAA-CA-TTTCC-TTGTT
gi|57028 : GCCATTT-G--GA-ATTTGGC-A--CCA----T-------G-G-GG---CA-TTGA---TGT----TCCTCC-AAA-CACTTT-C-TTTTT
gi|57029 : CCATTT-T--GA-ATTTTGC-A---CA----T----GG-G-G-GG---CA-TTTAG--TGT----TT-T-C--AA-CA-TTT-CTTTGTT
gi|57030 : CATTT-T--GA-ATTCTGCCA--CCA----T----GG-GTG-GG---C--TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57031 : TC-T--AA-ATTTTGC-A--CCA----C----AG-G-G-GA---CA-TACA---TGT----TTCT-G-AAA-CT-TTT-C-TTGTT
gi|57032 : T-T--GACATTTT-C-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-ATGTT
gi|57033 : --GA-ATTTGGC-A--C-A----T----GG-G-G-GG---CA-TTTAA--TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57034 : GC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CC-ATT-C-TTGTT
gi|57035 : ----GG-G-G-GG---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-TTGT
gi|57036 : -G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-CTT-C-TTGTT
blockSeqs : G TG C C GA ATTT GGAG T TGG T ATT TCTC CA C T A T
blockSeqs : . T . A C AC GGG T . T G . CA T C C T
blockSeqs : . T . C C TG GG . . G A . CA . . . T
blockSeqs : . . . . . . G . . G . . CA . . . T
blockSeqs : . . . . . . . . . G . . CC . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . G . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . G . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . G . . G . . . .
blockSeqs : . . . . . . . . . T . . G . . . .
blockSeqs : . . . . . . . . . G . . G . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . A . . G . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . A . . C . . . .
blockSeqs : . . . . . . . . . G . . G . . . .
blockSeqs : . . . . . . . . . G . . G . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . G . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . G . . A . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . G . . C . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . G . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . . . . A . . C . . . .
blockSeqs : . . . . . . . . . T . . A . . . .
blockSeqs : . . . . . . . . T . . C . . . .
blockSeqs : . . . . . . T . . .
blockSeqs : . . . G . . .
blockSeqs : . . G . .
blockSeqCons :
originalCons : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
finalCons : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
Alignments
lowQualScore : 1 33 1 2 33 4444 6666 1 0 0 111 0 1 333 2222 444 2 2 2 4
lowQualScore : . .. . . .. .... .... . . . ... . . ... .... ... . . . .
lowQualScore : 0 44 0 9 33 8888 0000 9 9 9 666 9 0 555 0000 333 0 0 0 0
consensus : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
Reference ( family-456 ) : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TNTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56994 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TATA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56995 : ATAACCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56996 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCA-C-AAA-CA-TTT-C-TTGTT
gi|56997 : ATAGCAATTT-T--GG-ATTTTGC-A--CCA----T----GT-G-G-GG---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|56998 : ATAGCCATTT-T--GA--TTTTGT-T--CCA----C----GG-G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|56999 : ATAGCCATTT-T--GG-ATTTGGC-A--CCA----T----GG-G-G-G----CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57000 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57001 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57002 : ATAGCCATTT-T--GA-ATTTTGC-A--CCA----T-----G-G-G-GG---CA-TTTA---TGT----TTCT-CAAAA-CA-TTT-CTTTGTT
gi|57003 : ATAGCCATTT-T--GA-ATTCTGCCA--CCAATTTT----GG-G-G-GGTGGCA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57004 : ATAGCCATTT-T--GA--TTTTGC-A--CCA----T----GG-G-G-GG---CATTTTA---TGT----TTCT-C-AAACCA-TTT-T-CTGTT
gi|57005 : ATAGGCATTT----GA-ATTTTG--A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA--TT-C-TTGTT
gi|57006 : ATAGCCATTT-T--G--ATTTTGC-A--CCA----TG---GG-G-G-GG---CA-TTTA---TGT----TTC--C-AAA--A-TTT-C-TTGTT
gi|57007 : ATAGCCAATT-T--GG-ATTTTGC-A--CCA----TGGAGGG-G-G-GG---GG-GGTA---TGT----TTCT-C-AAA-CA-TCT-C-TTGTT
gi|57008 : ATAGCCATTG-G--GA-TTTTTGC-A--CCA----T----GG-G-A-TG---CG-CGTA---TGT----TTTT-G-AAA-CA-TTT-C-TTGTT
gi|57009 : ATAGCTATTT-T--AG-ATTTTGC-A--CCA----T----TT-G-G-GG---CA-TGTA---TAT----TTTT-G-AAA-CA-TTT-C-ATG
gi|57010 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-C-GG---TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57011 : ATAGCCATTT-G--GA---TTTGC-AGACCA----T----GG-G-G-GT---CA-TTTA---TGT----TTCT-C-AAATCATTTT-C-TTGTT
gi|57012 : ATGGCTAATT-T--AG-ATTT-GC-A--CCA----T----GG-G-G-G----TG-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57013 : ATAGCCATTT-T--GG-ATTTTGC-A--CCA----TGG--GG-G-G-GG---GG-GGTA---TCT----TTAT---GAA-CA-TTT-C-TTGTT
gi|57014 : ATAACCCTTT-T--CA-ATTTTGC-A--CCA----T-----A-G-G-GA---CA-TATA---CAT----TTTA-C-AAA-CA-TTT-C-TTGTT
gi|57015 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-GAGG---GG-GGTA---TGT----TTTA-C-AAA-CA-TCT-C-TTGTT
gi|57016 : ATGGCCATTT-T--CA-ATTTTGC-AC-CCA----C----GG-G-G-AG---GG-GGTA---TGT----TTTA-CAAAA-CA-TCT-C-TTGTT
gi|57017 : ATAACCCTTT-T--CA-ATTTTGC-A--CCC----TGGG-GG-G-G-GG---CA-TACA---TGT----TT-T-C-AAA-CA-TAT-C-TT
gi|57018 : ATAACCATTT-T--GT-ATTTTGC-A--CCA----T----GG-G-A-GG---CG-TGTT---TGT----ATCT-
gi|57019 : ATAACCATTT-T--GG--TTTTGC-A--CAA----T----GG-G-G-GG---C--TG-A---TTT----TGCT-G-AAA-CA-TTT-C-
gi|57020 : ATAACCATTT-T--GG-TTTTTGC-A--CAAAC--T----GG-G-G-G-------TGTA---TTT----TGCT-G-AAA-CA-TTT-C-TTG
gi|57021 : ATAGCCCCTT-T--TA-ATTT-GC-A--CCA----T----GG-G-G-GG---CA-TTT----TG-----TTCT----AA-C--TTT-C-TTGTT
gi|57022 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57023 : ATAGCCATTT-TT-GA-ATTTTGC-A--CCG----C----GGTG-G-GG---GA-TTTA---TG-----TTCT-C-
gi|57024 : TAGCCATTT-CTGGG-ATTTGGC-A--CCA----T----TG-G-G-GA---CA-TGTA---TGT----TTCT-G-AAA-CA-TTT-C-TTGTT
gi|57025 : TAGCCATTT-A--GA-ATTTTGCAA--CCATG--T----GG-G-G-GG---CA-TTTAATTTGTTCTCTTCT-C--AA-CA-TTTAC-TTGTT
gi|57026 : AGCCATTT-T--GG-ATTTTGC-A--CCA----T----GG-G-A-GA---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-ATG
gi|57027 : AGCCATTTGT--GA-ATTTTG--A--CCA----T----GG-G-G-G----CA-TTTA---TGT----TTCT-C-AAA-CA-TTTCC-TTGTT
gi|57028 : GCCATTT-G--GA-ATTTGGC-A--CCA----T-------G-G-GG---CA-TTGA---TGT----TCCTCC-AAA-CACTTT-C-TTTTT
gi|57029 : CCATTT-T--GA-ATTTTGC-A---CA----T----GG-G-G-GG---CA-TTTAG--TGT----TT-T-C--AA-CA-TTT-CTTTGTT
gi|57030 : CATTT-T--GA-ATTCTGCCA--CCA----T----GG-GTG-GG---C--TTTA---TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57031 : TC-T--AA-ATTTTGC-A--CCA----C----AG-G-G-GA---CA-TACA---TGT----TTCT-G-AAA-CT-TTT-C-TTGTT
gi|57032 : T-T--GACATTTT-C-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CA-TTT-C-ATGTT
gi|57033 : --GA-ATTTGGC-A--C-A----T----GG-G-G-GG---CA-TTTAA--TGT----TTCT-C-AAA-CA-TTT-C-TTGTT
gi|57034 : GC-A--CCA----T----GG-G-G-GG---CA-TTTA---TGT----TTCT-C-AAA-CC-ATT-C-TTGTT
gi|57035 : ----GG-G-G-GG---CA-TGTA---TGT----TTCT-A-AAA-CA-TTT-C-TTGT
gi|57036 : -G-G-GG---CA-TGTA---TGT----TTCT-C-AAA-CA-CTT-C-TTGTT