lowQualScore : 1 333333333333333333333333
lowQualScore : 3 3 3 11 5 0 0 0 0 0 1111 1 1 0 1 1 999999999999999999999999 3 3 3
lowQualScore : . . . .. . . . . . . .... . . . . . ........................ . . .
lowQualScore : 9 6 3 33 3 9 9 9 9 9 9999 8 8 9 8 0 222222222222222222222222 1 1 3
consensus : TAAT-TCCATCAATCTG--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
Reference ( gi|27510 ) : TACT-TCTAGCAATCTG--ATTAGAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27501 : TAAT-TCCATCAATCTC--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27502 : tTAAT-TCCATCAATCTC--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCAT-ACAT-AAGCCGTTAT
gi|27503 : tTAAT-TCCATCAATCTC--ATTAAAA-TTCG-CTCC-TTTGATCCGT-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27504 : tTAAT-TCCATCAATCTC--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCC---G----CT--------------T-ATAGCAT-ACAT-AAGC
gi|27506 : tTAAT-TCCACCATTC----ATTAAAA-TCAG-CTAC-TTTGATCCGC-T-C----AC-T-T--G-ATCGCT-TGGC---G-----C--------------T--TTGCGT-ACAT-AAGCCGTT
gi|27511 : tACT-TCTATCAATCTG--ATTAGAA-TCAG-CTCC--TTGATCCGC-CAC----AC-T-T-AG-ATCGCT-TGTT---G----ACT-------------T-ATAGCGT-ACAT-AAGCCGT
gi|27505 : taACT-TCTATCAATCTG--TTTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-TAAG-ATCACT-TGCT---G----A---------------T-AAAGCGT-ACAT-AAGCTGTTAT
gi|27512 : ttaACT-TCCATCAATCTC--ATTAAAAATCAG-CTCC-TTTGATCTGC-T-C----AC-T-T-AG-ATCGCT-TGCTTCAGCTTTACATCTACATGTATGTT-ATAGTGT-ACAT-AAGCCGTTAT
gi|27514 : taACTCTCT--CAATCTG--ATTAAAA-TCAG-ATCC-TTTGATCCAC-T-C----AC-G-T-AG-ATCGC
gi|27513 : -TCTATCAATTGGCCATTAGAA-TCGG-CTCCCTTTGATCCGCCT-C----AC-T-T-AG-ATCGCA-TGC----G----AC--------------TGAAGGCGTAACAT-AAG-CGTTA
gi|27516 : taac-TCTGCCAATCTA--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-ATCGCT-
gi|27517 : CTACCAATCTG--ATCAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27519 : CTACCAATCTG--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27518 : CTACCAATCTG--ATTAAAA-TCAG-CTCC--TAGATCCGC-T-C----AC-T-T-AG-ATCGC
gi|27508 : GCATTCTG--ATTAAAA-TCAGGCTCT-TGTGATCCGC-T-CTTTCAC-T-T-AG-ATCGCT-TAC
gi|27520 : ttaaatCAATCTG--ATTAGAA-TCAG-CTCC-TTTCATCCGC-T-A----AC-T-T-AG-ATAGCT-TGCT---G----AC--------------T-ATAGCGT-ACAC-AAGCCGTTAT
gi|27530 : atCAATCTG--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-------------AC--------------T-CTAGTGT-A
gi|27534 : CAATCTG--ATTAGAA-TCGG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-gcgatctaagtaagc
gi|27533 : CAATCTG--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AC-ATCGCT-
gi|27521 : CAATCTG--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27526 : acCAATCTG--ATTAAAA-TCAG-GTCC-TTTAATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27522 : atCAATCTG--ATTAAAA-TCAG-CTC--TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-acatgttgttt
gi|27515 : acCGATCTG--ATTAAAA-TCAG-CTCC-TTTGATCTGT-T-C----AC-T-T-GG-ATCGCT-
gi|27532 : ttccacgtgtCAATCTG--ATTAAAA-TCA--CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27535 : CAATCTG--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AG-ATTGCT-
gi|27523 : CAATCTG--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27536 : acCAGTCTG--ATTAAAA-TCAA-CGCC-TTTGATCCGG-T-T----AC-T-T-AG-ATCGCT-TG
gi|27507 : CAATCTG--ATTAAAA-TCAG-TTCC-TTTGATCCGT-T-C----TC-G-T-AG-ATCGCT-
gi|27527 : ttgattcgataCAATCTG--ATTGAAA-CCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AGAATCGCT-
gi|27540 : tCAATCTG--ATTAAAA-TCAG-TTCC-TTAGATCCGC-T-C----AC-T-G-GC-ATCGCT-
gi|27529 : CAGTCTG--ATGAAGA-TCAG-TTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27538 : tCAATCTG--ATTAAAA-TCGG-ATCC-TTTGATCCG----T----AC-G-T-AG-ATCGCT-TAC
gi|27541 : CAATCTG--ATGAAGA-TTAG-CTCC-TTTGGTCCAC-T-C----AC-T-C-GG-ATCGCT-
gi|27531 : CAATCTG--ATTAAAA-TCAA-CT----TGGATCCGC-T-T----AC-T-T-AG-ATCGCT-
gi|27525 : CAATCTA--GTTTAAA-TCAG-CTCC-TTAGATCCGC-T-A----AT-T-T-AG-ATCGCT-
gi|27509 : acCAGTCTG--ATTAAAA-TCAA-CTCC-TTTGATCTGC-T-C----AC-G-T-AT-AT
gi|27528 : tttactccagtgtCAATCTG--ATTGAAA-CCAG-ATCC-TTTGATCCG--T-C----AC-G-T-AGAATCGCT-
gi|27539 : tCAATCTA--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-AT-GCT-
gi|27537 : CAGTCTC--ATTAAAA-GCAG-ATTC-TTTGATCCGC-T-C----AT-G-T-AG-ATCGCT-
gi|27542 : CAATCTA--ATTAAAA-TAGA-ATCC-TTTGATGCAC-T-C----AC-G-T-AT-ATCGCT-T--T---G--------------------T-GTAGCG--ACAT-
gi|27543 : ATCTG--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-A-T-AG-ATCGC
gi|27544 : TCTG--AATAAAA-CCAC-ATTC-TTTGATCCGC-T-C----AC-T-G-AG-ATCGCTACGCT------------------------T-ATA---C-ACATCAATCTGCTAT
gi|27524 : TG--ATTA-AA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27545 : accactctAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGC
Alignments
lowQualScore : 333333333333333333333333
lowQualScore : 8 5555 1 0 11 0 0 0 0 0 1111 1 1 0 1 1 444444444444444444444444 2 2 3
lowQualScore : . .... . . .. . . . . . .... . . . . . ........................ . . .
lowQualScore : 6 5555 0 9 22 9 9 9 9 9 9999 8 8 9 8 0 444444444444444444444444 9 9 1
consensus : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
Reference ( family-436 ) : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27501 : TAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27502 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCAT-ACAT-AAGCCGTTAT
gi|27503 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TTCG-CTCC-TTTGATCCGT-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27504 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCC---G----CT--------------T-ATAGCAT-ACAT-AAGC
gi|27505 : tTAACTTCTA----T-CAATCT-G--TTTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-TAAG-ATCACT-TGCT---G----A---------------T-AAAGCGT-ACAT-AAGCTGTTAT
gi|27506 : tTAA-TTCCA----C-CATTC-----ATTAAAA-TCAG-CTAC-TTTGATCCGC-T-C----AC-T-T--G-ATCGCT-TGGC---G-----C--------------T--TTGCGT-ACAT-AAGCCGTT
gi|27507 : tTGA-TTCGA----TACAATCT-G--ATTAAAA-TCAG-TTCC-TTTGATCCGT-T-C----TC-G-T-AG-ATCGCT-
gi|27508 : t-CATTCT-G--ATTAAAA-TCAGGCTCT-TGTGATCCGC-T-CTTTCAC-T-T-AG-ATCGCT-TAC
gi|27509 : ttaaatgA-CTCCAGTG-T-CAGTCT-G--ATTAAAA-TCAA-CTCC-TTTGATCTGC-T-C----AC-G-T-AT-AT
gi|27510 : tttTAC-TTCTA----G-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27511 : TAACTTCTA----T-CAATCT-G--ATTAGAA-TCAG-CTCC--TTGATCCGC-CAC----AC-T-T-AG-ATCGCT-TGTT---G----ACT-------------T-ATAGCGT-ACAT-AAGCCGT
gi|27512 : TAACTTCCA----T-CAATCT-C--ATTAAAAATCAG-CTCC-TTTGATCTGC-T-C----AC-T-T-AG-ATCGCT-TGCTTCAGCTTTACATCTACATGTATGTT-ATAGTGT-ACAT-AAGCCGTTAT
gi|27513 : TAA-CTCTA----T-CAATTG-GCCATTAGAA-TCGG-CTCCCTTTGATCCGCCT-C----AC-T-T-AG-ATCGCA-TGC----G----AC--------------TGAAGGCGTAACAT-AAG-CGTTA
gi|27514 : A-CTCTC----T-CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCAC-T-C----AC-G-T-AG-ATCGC
gi|27515 : -TTCCACGTGT-CGATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCTGT-T-C----AC-T-T-GG-ATCGCT-
gi|27516 : TCTG----C-CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-ATCGCT-
gi|27517 : CTA----C-CAATCT-G--ATCAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27518 : CTA----C-CAATCT-G--ATTAAAA-TCAG-CTCC--TAGATCCGC-T-C----AC-T-T-AG-ATCGC
gi|27519 : CTA----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27520 : A----T-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTCATCCGC-T-A----AC-T-T-AG-ATAGCT-TGCT---G----AC--------------T-ATAGCGT-ACAC-AAGCCGTTAT
gi|27521 : A----C-CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27522 : A----C-CAATCT-G--ATTAAAA-TCAG-CTC--TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27523 : A----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27524 : A----C-CACTCTTG--ATTAAA--TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27525 : A----C-CAATCT-A--GTTTAAA-TCAG-CTCC-TTAGATCCGC-T-A----AT-T-T-AG-ATCGCT-
gi|27526 : A----T-CAATCT-G--ATTAAAA-TCAG-GTCC-TTTAATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27527 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AGAATCGCT-acatgttgttt
gi|27528 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCG--T-C----AC-G-T-AGAATCGCT-
gi|27529 : ----T-CAGTCT-G--ATGAAGA-TCAG-TTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27530 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-------------AC--------------T-CTAGTGT-A
gi|27531 : -CAATCT-G--ATTAAAA-TCAA-CT----TGGATCCGC-T-T----AC-T-T-AG-ATCGCT-gcgatctaagtaagc
gi|27532 : -CAATCT-G--ATTAAAA-TCA--CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27533 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AC-ATCGCT-
gi|27534 : -CAATCT-G--ATTAGAA-TCGG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27535 : -CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AG-ATTGCT-
gi|27536 : -CAGTCT-G--ATTAAAA-TCAA-CGCC-TTTGATCCGG-T-T----AC-T-T-AG-ATCGCT-TG
gi|27537 : -CAGTCT-C--ATTAAAA-GCAG-ATTC-TTTGATCCGC-T-C----AT-G-T-AG-ATCGCT-
gi|27538 : -CAATCT-G--ATTAAAA-TCGG-ATCC-TTTGATCCG----T----AC-G-T-AG-ATCGCT-TAC
gi|27539 : -CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-AT-GCT-
gi|27540 : -CAATCT-G--ATTAAAA-TCAG-TTCC-TTAGATCCGC-T-C----AC-T-G-GC-ATCGCT-
gi|27541 : -CAATCT-G--ATGAAGA-TTAG-CTCC-TTTGGTCCAC-T-C----AC-T-C-GG-ATCGCT-
gi|27542 : -CAATCT-A--ATTAAAA-TAGA-ATCC-TTTGATGCAC-T-C----AC-G-T-AT-ATCGCT-T--T---G--------------------T-GTAGCG--ACAT-
gi|27543 : ATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-A-T-AG-ATCGC
gi|27544 : TCT-G--AATAAAA-CCAC-ATTC-TTTGATCCGC-T-C----AC-T-G-AG-ATCGCTACGCT------------------------T-ATA---C-ACATCAATCTGCTAT
gi|27545 : TAAAA-AAAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGC
Alignments
lowQualScore : 333333333333333333333333
lowQualScore : 8 5555 1 0 11 0 0 0 0 0 1111 1 1 0 1 1 444444444444444444444444 2 2 3
lowQualScore : . .... . . .. . . . . . .... . . . . . ........................ . . .
lowQualScore : 6 5555 0 9 22 9 9 9 9 9 9999 8 8 9 8 0 444444444444444444444444 9 9 1
consensus : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
Reference ( family-436 ) : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27501 : TAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27502 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCAT-ACAT-AAGCCGTTAT
gi|27503 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TTCG-CTCC-TTTGATCCGT-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27504 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCC---G----CT--------------T-ATAGCAT-ACAT-AAGC
gi|27505 : tTAACTTCTA----T-CAATCT-G--TTTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-TAAG-ATCACT-TGCT---G----A---------------T-AAAGCGT-ACAT-AAGCTGTTAT
gi|27506 : tTAA-TTCCA----C-CATTC-----ATTAAAA-TCAG-CTAC-TTTGATCCGC-T-C----AC-T-T--G-ATCGCT-TGGC---G-----C--------------T--TTGCGT-ACAT-AAGCCGTT
gi|27507 : tTGA-TTCGA----TACAATCT-G--ATTAAAA-TCAG-TTCC-TTTGATCCGT-T-C----TC-G-T-AG-ATCGCT-
gi|27508 : t-CATTCT-G--ATTAAAA-TCAGGCTCT-TGTGATCCGC-T-CTTTCAC-T-T-AG-ATCGCT-TAC
gi|27509 : ttaaatgA-CTCCAGTG-T-CAGTCT-G--ATTAAAA-TCAA-CTCC-TTTGATCTGC-T-C----AC-G-T-AT-AT
gi|27510 : tttTAC-TTCTA----G-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27511 : TAACTTCTA----T-CAATCT-G--ATTAGAA-TCAG-CTCC--TTGATCCGC-CAC----AC-T-T-AG-ATCGCT-TGTT---G----ACT-------------T-ATAGCGT-ACAT-AAGCCGT
gi|27512 : TAACTTCCA----T-CAATCT-C--ATTAAAAATCAG-CTCC-TTTGATCTGC-T-C----AC-T-T-AG-ATCGCT-TGCTTCAGCTTTACATCTACATGTATGTT-ATAGTGT-ACAT-AAGCCGTTAT
gi|27513 : TAA-CTCTA----T-CAATTG-GCCATTAGAA-TCGG-CTCCCTTTGATCCGCCT-C----AC-T-T-AG-ATCGCA-TGC----G----AC--------------TGAAGGCGTAACAT-AAG-CGTTA
gi|27514 : A-CTCTC----T-CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCAC-T-C----AC-G-T-AG-ATCGC
gi|27515 : -TTCCACGTGT-CGATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCTGT-T-C----AC-T-T-GG-ATCGCT-
gi|27516 : TCTG----C-CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-ATCGCT-
gi|27517 : CTA----C-CAATCT-G--ATCAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27518 : CTA----C-CAATCT-G--ATTAAAA-TCAG-CTCC--TAGATCCGC-T-C----AC-T-T-AG-ATCGC
gi|27519 : CTA----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27520 : A----T-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTCATCCGC-T-A----AC-T-T-AG-ATAGCT-TGCT---G----AC--------------T-ATAGCGT-ACAC-AAGCCGTTAT
gi|27521 : A----C-CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27522 : A----C-CAATCT-G--ATTAAAA-TCAG-CTC--TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27523 : A----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27524 : A----C-CACTCTTG--ATTAAA--TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27525 : A----C-CAATCT-A--GTTTAAA-TCAG-CTCC-TTAGATCCGC-T-A----AT-T-T-AG-ATCGCT-
gi|27526 : A----T-CAATCT-G--ATTAAAA-TCAG-GTCC-TTTAATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27527 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AGAATCGCT-acatgttgttt
gi|27528 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCG--T-C----AC-G-T-AGAATCGCT-
gi|27529 : ----T-CAGTCT-G--ATGAAGA-TCAG-TTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27530 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-------------AC--------------T-CTAGTGT-A
gi|27531 : -CAATCT-G--ATTAAAA-TCAA-CT----TGGATCCGC-T-T----AC-T-T-AG-ATCGCT-gcgatctaagtaagc
gi|27532 : -CAATCT-G--ATTAAAA-TCA--CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27533 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AC-ATCGCT-
gi|27534 : -CAATCT-G--ATTAGAA-TCGG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27535 : -CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AG-ATTGCT-
gi|27536 : -CAGTCT-G--ATTAAAA-TCAA-CGCC-TTTGATCCGG-T-T----AC-T-T-AG-ATCGCT-TG
gi|27537 : -CAGTCT-C--ATTAAAA-GCAG-ATTC-TTTGATCCGC-T-C----AT-G-T-AG-ATCGCT-
gi|27538 : -CAATCT-G--ATTAAAA-TCGG-ATCC-TTTGATCCG----T----AC-G-T-AG-ATCGCT-TAC
gi|27539 : -CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-AT-GCT-
gi|27540 : -CAATCT-G--ATTAAAA-TCAG-TTCC-TTAGATCCGC-T-C----AC-T-G-GC-ATCGCT-
gi|27541 : -CAATCT-G--ATGAAGA-TTAG-CTCC-TTTGGTCCAC-T-C----AC-T-C-GG-ATCGCT-
gi|27542 : -CAATCT-A--ATTAAAA-TAGA-ATCC-TTTGATGCAC-T-C----AC-G-T-AT-ATCGCT-T--T---G--------------------T-GTAGCG--ACAT-
gi|27543 : ATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-A-T-AG-ATCGC
gi|27544 : TCT-G--AATAAAA-CCAC-ATTC-TTTGATCCGC-T-C----AC-T-G-AG-ATCGCTACGCT------------------------T-ATA---C-ACATCAATCTGCTAT
gi|27545 : TAAAA-AAAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGC
blockSeqs : C CGTG CC TTTC G A A A TCAGCTTTACATCTACATGTATGT G A C
blockSeqs : C GTG . . G A A . GACT . . .
blockSeqs : C . . . . . . . GCT . . .
blockSeqs : . . . . . . . . GCT . . .
blockSeqs : . . . . . . . . GCT . . .
blockSeqs : . . . . . . . . GAC . . .
blockSeqs : . . . . . . . . GAC . . .
blockSeqs : . . . . . . . . GAC . . .
blockSeqs : . . . . . . . . GA . . .
blockSeqs : . . . . . . . . GC . . .
blockSeqs : . . . . . . . . AC . . .
blockSeqs : . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
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blockSeqCons :
originalCons : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
finalCons : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
Alignments
lowQualScore : 333333333333333333333333
lowQualScore : 8 5555 1 0 11 0 0 0 0 0 1111 1 1 0 1 1 444444444444444444444444 2 2 3
lowQualScore : . .... . . .. . . . . . .... . . . . . ........................ . . .
lowQualScore : 6 5555 0 9 22 9 9 9 9 9 9999 8 8 9 8 0 444444444444444444444444 9 9 1
consensus : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
Reference ( family-436 ) : TAA-TTCCA----T-CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27501 : TAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27502 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCAT-ACAT-AAGCCGTTAT
gi|27503 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TTCG-CTCC-TTTGATCCGT-T-C----AC-T-T-GG-ATCGCT-TGCT---G----CT--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27504 : tTAA-TTCCA----T-CAATCT-C--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-GG-ATCGCT-TGCC---G----CT--------------T-ATAGCAT-ACAT-AAGC
gi|27505 : tTAACTTCTA----T-CAATCT-G--TTTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-TAAG-ATCACT-TGCT---G----A---------------T-AAAGCGT-ACAT-AAGCTGTTAT
gi|27506 : tTAA-TTCCA----C-CATTC-----ATTAAAA-TCAG-CTAC-TTTGATCCGC-T-C----AC-T-T--G-ATCGCT-TGGC---G-----C--------------T--TTGCGT-ACAT-AAGCCGTT
gi|27507 : tTGA-TTCGA----TACAATCT-G--ATTAAAA-TCAG-TTCC-TTTGATCCGT-T-C----TC-G-T-AG-ATCGCT-
gi|27508 : t-CATTCT-G--ATTAAAA-TCAGGCTCT-TGTGATCCGC-T-CTTTCAC-T-T-AG-ATCGCT-TAC
gi|27509 : ttaaatgA-CTCCAGTG-T-CAGTCT-G--ATTAAAA-TCAA-CTCC-TTTGATCTGC-T-C----AC-G-T-AT-AT
gi|27510 : tttTAC-TTCTA----G-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AG-ATCGCT-TGCT---G----AC--------------T-ATAGCGT-ACAT-AAGCCGTTAT
gi|27511 : TAACTTCTA----T-CAATCT-G--ATTAGAA-TCAG-CTCC--TTGATCCGC-CAC----AC-T-T-AG-ATCGCT-TGTT---G----ACT-------------T-ATAGCGT-ACAT-AAGCCGT
gi|27512 : TAACTTCCA----T-CAATCT-C--ATTAAAAATCAG-CTCC-TTTGATCTGC-T-C----AC-T-T-AG-ATCGCT-TGCTTCAGCTTTACATCTACATGTATGTT-ATAGTGT-ACAT-AAGCCGTTAT
gi|27513 : TAA-CTCTA----T-CAATTG-GCCATTAGAA-TCGG-CTCCCTTTGATCCGCCT-C----AC-T-T-AG-ATCGCA-TGC----G----AC--------------TGAAGGCGTAACAT-AAG-CGTTA
gi|27514 : A-CTCTC----T-CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCAC-T-C----AC-G-T-AG-ATCGC
gi|27515 : -TTCCACGTGT-CGATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCTGT-T-C----AC-T-T-GG-ATCGCT-
gi|27516 : TCTG----C-CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-ATCGCT-
gi|27517 : CTA----C-CAATCT-G--ATCAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27518 : CTA----C-CAATCT-G--ATTAAAA-TCAG-CTCC--TAGATCCGC-T-C----AC-T-T-AG-ATCGC
gi|27519 : CTA----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27520 : A----T-CAATCT-G--ATTAGAA-TCAG-CTCC-TTTCATCCGC-T-A----AC-T-T-AG-ATAGCT-TGCT---G----AC--------------T-ATAGCGT-ACAC-AAGCCGTTAT
gi|27521 : A----C-CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27522 : A----C-CAATCT-G--ATTAAAA-TCAG-CTC--TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27523 : A----C-CAATCT-G--ATTAAAA-TAAG-CTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27524 : A----C-CACTCTTG--ATTAAA--TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27525 : A----C-CAATCT-A--GTTTAAA-TCAG-CTCC-TTAGATCCGC-T-A----AT-T-T-AG-ATCGCT-
gi|27526 : A----T-CAATCT-G--ATTAAAA-TCAG-GTCC-TTTAATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27527 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AGAATCGCT-acatgttgttt
gi|27528 : ----T-CAATCT-G--ATTGAAA-CCAG-ATCC-TTTGATCCG--T-C----AC-G-T-AGAATCGCT-
gi|27529 : ----T-CAGTCT-G--ATGAAGA-TCAG-TTCC-TTAGATCCAC-T-C----AC-T-T-AG-ATCGCT-
gi|27530 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-------------AC--------------T-CTAGTGT-A
gi|27531 : -CAATCT-G--ATTAAAA-TCAA-CT----TGGATCCGC-T-T----AC-T-T-AG-ATCGCT-gcgatctaagtaagc
gi|27532 : -CAATCT-G--ATTAAAA-TCA--CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27533 : -CAATCT-G--ATTAAAA-TCAG-CTCC-TTTGATCCGC-T-C----AC-T-T-AC-ATCGCT-
gi|27534 : -CAATCT-G--ATTAGAA-TCGG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGCT-
gi|27535 : -CAATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-G-T-AG-ATTGCT-
gi|27536 : -CAGTCT-G--ATTAAAA-TCAA-CGCC-TTTGATCCGG-T-T----AC-T-T-AG-ATCGCT-TG
gi|27537 : -CAGTCT-C--ATTAAAA-GCAG-ATTC-TTTGATCCGC-T-C----AT-G-T-AG-ATCGCT-
gi|27538 : -CAATCT-G--ATTAAAA-TCGG-ATCC-TTTGATCCG----T----AC-G-T-AG-ATCGCT-TAC
gi|27539 : -CAATCT-A--ATTAAAA-TTAG-ATCC-TTTGATCCGC-T-C----ACGTAT-AG-AT-GCT-
gi|27540 : -CAATCT-G--ATTAAAA-TCAG-TTCC-TTAGATCCGC-T-C----AC-T-G-GC-ATCGCT-
gi|27541 : -CAATCT-G--ATGAAGA-TTAG-CTCC-TTTGGTCCAC-T-C----AC-T-C-GG-ATCGCT-
gi|27542 : -CAATCT-A--ATTAAAA-TAGA-ATCC-TTTGATGCAC-T-C----AC-G-T-AT-ATCGCT-T--T---G--------------------T-GTAGCG--ACAT-
gi|27543 : ATCT-G--ATTAAAA-TCAG-ATCC-TTTGATCCGC-T-C----AC-A-T-AG-ATCGC
gi|27544 : TCT-G--AATAAAA-CCAC-ATTC-TTTGATCCGC-T-C----AC-T-G-AG-ATCGCTACGCT------------------------T-ATA---C-ACATCAATCTGCTAT
gi|27545 : TAAAA-AAAG-CTCC-TTAGATCCGC-T-C----AC-T-T-AG-ATCGC