lowQualScore : 1 11 1 1 0 33333 33 4444444 111 0 1 1 0 0 11 111 0 333333 0 222222 0 0 0 9 1
lowQualScore : . .. . . . ..... .. ....... ... . . . . . .. ... . ...... . ...... . . . . .
lowQualScore : 1 44 0 0 9 33333 88 3333333 666 9 8 8 9 9 22 666 9 444444 9 666666 9 9 9 1 0
consensus : GAATA-T--GA-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATATT
Reference ( gi|49870 ) : GAATA-T--GA-T-T-T-----TC-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49871 : GAATA-T--GA-T-T-T-----TC-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATA
gi|49873 : GAATA-T--GA-T-T-T-----TC-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCAC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49874 : GAATA-T--GA-T-T-T-----TT-CT----T--AGCTGAA---T-AAA-TCTT-AAT-ATCTC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49877 : GAGTA-T--GG-T-T-C-----TT-TT----A--GGCTGAA---T-AAA-TCTT-CAT-ATTCC-CC--TC---A-T------TG-C------C-GT-GTAATAA-A-TG-TATAT
gi|49875 : GAATA-T--GA-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--GA---A-C------TG-C------T-GT-GCAATAA-ATTG-TTTATT
gi|49884 : GAATA-T--GA-T-T-T-----TC-CT----T--GGCTTAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-T------TA-C------C-GT-GC-TTAA-A-TG-TATA
gi|49880 : GAACA-T--GG-T-T-C-----TT-TT----A--GGCTGAA---T-AAA-TC----AT-ATCCC-TC--TC---A-T------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49879 : GAATA-T--GA-T-T-T-----TT-GT----T--GGGTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-T------TA-T------C-AT-GCAATAA-A-TG-TATA
gi|49872 : GAATA-T--GA-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATTCC-CC--GA---A-C------TG-C------T-GT-GCAATAATT-TG-TTTATT
gi|49882 : GAATA-T--GA-T-T-T-----TT-TT----A--GGCGGAA---G-AAA-TCTA-CAT-AT-CC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TTTA
gi|49887 : GAATA-T--GG-T-T-C-----TT-TT----A--GGCTGAA---T-AAATTCTC-CAT-ATCCC-CC--TC---A-T------TG--------C-GT-GCGATAA-A-TG--ATAT
gi|49891 : GGATA-T--GG-T-T-C-----TC-TT----A--CGTTGAA---T-AAA-TCTT-CAT-ACCCCGCC--TC---A-T------TG-C------CGGT-GCAATAA-A-TG-TAAATT
gi|49888 : GAATA-T--GG-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTC-CAT-GTCCC-CC--GA---A-CT-----TT-C------C-GT-GCAATAA-ATTG-TTTATT
gi|49889 : GAATA-T--GG-T-T-C-----TT-TT----A--CGTTGAGAATT-GAA-TCTT-CAT-ATCCC-CC--TC---A-T------TG-C------C-GT-GCAATAA-A-TGCTATAT
gi|49885 : GAATA-T--GA-T-T-A-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATTCC-CA--GA---A-C------TG-C------T-GT-GAAATAA-ATTG-TTTATT
gi|49890 : GAATA-T--TG-T-TGT-----TC-ATTTTAA--CGTTGAA---TTGAA-TCTT-CAT-ATCCC-CC--TC---A-T------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49886 : GAATA-T--GA-TAT-T-----TC-TT----G--GG-TGAA---T-AAA-TATC-CAT-ATCTC-CC--TC---A-C------AA-T------C-AT-GCAATAA-A-TG-TATA
gi|49893 : GAATA-TTGGC-T-C-T-----T---T----A--GGCTGAA---T-AAA-CCTTTCAT-ACCCC-CC--TC---A-T------TGGC------C-GT-GCAATAA-A-TG-TA
gi|49895 : GAATAAT--GG-T-T-C-----TT-TT----A--AGCTGAA---T-AAA-TCTC-CAT-AT--C-CC--TC---A-T------TG-C------C-GTGGCAATAA-A-TG--ATAT
gi|49894 : GAATA-T--GA-T-T-T-----TT-CT----A--GGTTGAA---T-AAA-TCAT-CAT-ATCCC-CC--GA---A-C------TT-C------T-GT-ACAATAT-A-
gi|49896 : GGATA-T--GG-T-T-C-----TT-TT----A--GGCTGAA---T-AAT-CCTT-CAT-ATCCT-CC--CT---A--------TG-C------C-GT-G-AATAA-A-TG-TATA
gi|49881 : GAATA-T--GA-C-T-T-----TC-CT----ATAGACTGAA---T-AAA-TCAT-CAT-ATCCT-CC--GA---A-A------TG-A------C-GT-GCAATAA-ATTG-TTTATT
gi|49876 : GAATA-T--GAAT-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--GA---A-C------TG-C------C-
gi|49897 : GAATA-T--GA-G-T-T-----TT--T----AT-GGCTGAA---C-AAA-TCTT-CAT-ATCCC-CT--GA---A-C------TA-C------C-GT-GCAACAA-ATTG-TTTAT
gi|49892 : GAGTA-T--GA-T-T-T-----TT-TTT---G--GGGGGAA---T-GAA-TTTT-CAA-ATCTC-CC--TT---A-C------TA-T------C-AT-GCAATAA-A-TG-TATATT
gi|49878 : GAATA-T--GA-T-T-T-----TTTCT----A--AGCTAAA---T-AAT-TCAT-CAT-ATCCC-CC--GA---A-C------TG-A------T-CT-GCAATAA-GTTG-TTTATT
gi|49901 : GATTA-T--GA-G-T-TCTCTCTC-TT----A--CGTT-AA---T-AAA-TCTT-CAT-AACCA-CC--TCCCCA-T------TG-C------C-GT-GCAATAA-A-TG-TATACT
gi|49883 : GAATA-A--AA-C-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCGT-CAT-GTCAC-CT--AA---A-C------TT-C------C-CT-GCAATAA-A-
gi|49899 : GGATA-T--GC-T-T-T-----TT-TT----TTTGG-TGAA---T-AAA-TCTC-TAT-ATCTC-CC--TC---A-G------TA-T------C-AT-GCAATAA-A-TG-CACAT
gi|49898 : GAATA-T--GA-T-T-T-----TTTCT----T--GAGTGAA---T-AGA-TCTC-CAT-ATCTC-CC--GA---A-C------AT-T------C-AT-GCAATAA-ATTG-TTTATT
gi|49900 : GAATA-T--GA-T-T-TA----TC-TT----G--AG-TGAA---T-AGA-T-TT-CAT-ACCTT-CC--TT---A-C------TA-T------C-AT-GCCATAA-T-TG-TA
gi|49903 : AATA-T--GG-T-T-T-----TT-CT----T--GGGTGAA---T-AAA-TCTC-CAT-ATCTC-CC--TC---A-C------TA-CATGTATC-AT-GCAATAA-ATTG-TTTATT
gi|49905 : AAT--T--GA-T-T-T-----TC-TT----G--G--TGAA---T-AAA-TCTT-CATCATCTC-CC--TC---A-CCTCAACTC-C------C-AT-GCAATAA-A-TG-TATA
gi|49904 : AAAA-T--TA-T-T-T-----TT-CT----T--GAGTGAA---T-AAA-TCGC-CAT-ATCTC-CC--TC---A-C------TA-T------C-AT-GCAATAA-ATTG-TTTATT
gi|49902 : AATT-T--GA-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCAT-CAT-ATCCC-TC--AA---A-C------T------------T-GCAACAA-A-T--TAT
gi|49906 : ATA-T--TA-T-T-T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-C------TG-C------C-AT-GCAATAA-A-TG-TATA
gi|49907 : ATA-T--GA-T-T-T-----TT-CC----A--AACTGAA---T-AAA-TCTT-CAT-ATCCA-CC--GA---A-C------TG-C------C-GT-GCAATAA-A-TG-TATA
gi|49908 : ATA-T--GG-C-T-T-----TC-TTTT--A--GGCTGCA---T-AAA-TCTC-CAT-ATCCC-CCCGTC---A-T------TG-C------C-GT-GTAATAA-A-TG-TA
gi|49909 : --GA-T-T-T-----TT-CT----A--GGCGGAA---G-AAAATCTGGCAT-ATCCC-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TTTA
gi|49911 : -T-T-T-----TC-CT----A--CGCTGAA---T-AAA-TCTT-CAT-ACCCG-CC--TC---A-C------TG-C------C-GT-GCAATAA-A-TG-TATATT
gi|49910 : -T-T-----TC-TT----G--GG-TGAA---T-AAA-TCTC-CAT-AT-CC-CC--TC---A-C------TA-T------C-AT-GACATAA-A-TG-TATA
gi|49912 : ata-T-T-----TT-CT----A--GGCTGAA---T-AAA-TTTT-CA--ATACC-CC--CG---ACC------TA-C------C-AT-G-AAT-A-A-TG-T
gi|49913 : -T-----TT-CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATCCC-CC--TC---A-C------TA-C------C-GT-GCAATAA-A-TG-TATA
gi|49914 : -CT----A--GGCTGAA---T-AAA-TCTT-CAT-ATTCC-CC--GA---A-C------TA-C------T-GT-GCAATAA-ATTG-TTTATT
gi|49915 : GAA---T-AAA-TTTT-CAT-ATCTC-C---TC---A-C------TG-C------C-GT-GTCATAA-A-CG-TATA
Alignments
lowQualScore : 1 1 1 11 1 1111 44444444 0 111 0 1 0 0 0 0 11 111 0 333333 0 222222 0 0 0 8 0
lowQualScore : . . . .. . .... ........ . ... . . . . . . .. ... . ...... . ...... . . . . .
lowQualScore : 0 0 0 22 8 9999 11111111 9 555 9 7 9 9 9 9 22 555 9 444444 9 555555 9 9 9 9 9
consensus : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
Reference ( family-428 ) : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49870 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49871 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49872 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-GC------T-GT-GCAATAATT-TG-TTTATT
gi|49873 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCAC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49874 : GAATA-T-GA-TTTT--T-C----T-----T--A-GCTGAA---T-AAA-TC-TT-AAT-ATCTC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49875 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------T-GT-GCAATAA-ATTG-TTTATT
gi|49876 : GAATA-T-GAATTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------C-
gi|49877 : GAGTA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--TC---A-T------T-GC------C-GT-GTAATAA-A-TG-TATAT
gi|49878 : GAATA-T-GA-TTTT--TTC----T-----A--A-GCTAAA---T-AAT-TC-AT-CAT-ATCCC-CC--GA---A-C------T-GA------T-CT-GCAATAA-GTTG-TTTATT
gi|49879 : GAATA-T-GA-TTTT--T-G----T-----T--G-GGTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AT------C-AT-GCAATAA-A-TG-TATA
gi|49880 : GAACA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-----AT-ATCCC-TC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49881 : GAATA-T-GA-CTTT--C-C----T-----ATAG-ACTGAA---T-AAA-TC-AT-CAT-ATCCT-CC--GA---A-A------T-GA------C-GT-GCAATAA-ATTG-TTTATT
gi|49882 : GAATA-T-GA-TTTT--T-T----T-----A--G-GCGGAA---G-AAA-TC-TA-CAT-AT-CC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49883 : GAATA-A-AA-CTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-GT-CAT-GTCAC-CT--AA---A-C------T-TC------C-CT-GCAATAA-A-
gi|49884 : GAATA-T-GA-TTTT--C-C----T-----T--G-GCTTAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AC------C-GT-GC-TTAA-A-TG-TATA
gi|49885 : GAATA-T-GA-TTAT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CA--GA---A-C------T-GC------T-GT-GAAATAA-ATTG-TTTATT
gi|49886 : GAATA-T-GA-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TA-TC-CAT-ATCTC-CC--TC---A-C------A-AT------C-AT-GCAATAA-A-TG-TATA
gi|49887 : GAATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAATTC-TC-CAT-ATCCC-CC--TC---A-T------T-G-------C-GT-GCGATAA-A-TG--ATAT
gi|49888 : GAATA-T-GG-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TC-CAT-GTCCC-CC--GA---A-CT-----T-TC------C-GT-GCAATAA-ATTG-TTTATT
gi|49889 : GAATA-T-GG-TTCT--T-T----T-----A--C-GTTGAGAATT-GAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TGCTATAT
gi|49890 : GAATA-T-TG-TTGT--T-CATTTT-----A--ACGTTGAA---TTGAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49891 : GGATA-T-GG-TTCT--C-T----T-----A--C-GTTGAA---T-AAA-TC-TT-CAT-ACCCCGCC--TC---A-T------T-GC------CGGT-GCAATAA-A-TG-TAAATT
gi|49892 : GAGTA-T-GA-TTTT--T-T----TT----G--G-GGGGAA---T-GAA-TT-TT-CAA-ATCTC-CC--TT---A-C------T-AT------C-AT-GCAATAA-A-TG-TATATT
gi|49893 : GAATA-TTGG-CTCT--T------T-----A--G-GCTGAA---T-AAA-CCTTT-CAT-ACCCC-CC--TC---A-T------TGGC------C-GT-GCAATAA-A-TG-TA
gi|49894 : GAATA-T-GA-TTTT--T-C----T-----A--G-GTTGAA---T-AAA-TC-AT-CAT-ATCCC-CC--GA---A-C------T-TC------T-GT-ACAATAT-A-
gi|49895 : GAATAAT-GG-TTCT--T-T----T-----A--A-GCTGAA---T-AAA-TC-TC-CAT-AT--C-CC--TC---A-T------T-GC------C-GTGGCAATAA-A-TG--ATAT
gi|49896 : GGATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAT-CC-TT-CAT-ATCCT-CC--CT---A--------T-GC------C-GT-G-AATAA-A-TG-TATA
gi|49897 : GAATA-T-GA-GTTT--T------T-----AT-G-GCTGAA---C-AAA-TC-TT-CAT-ATCCC-CT--GA---A-C------T-AC------C-GT-GCAACAA-ATTG-TTTAT
gi|49898 : GAATA-T-GA-TTTT--TTC----T-----T--G-AGTGAA---T-AGA-TC-TC-CAT-ATCTC-CC--GA---A-C------A-TT------C-AT-GCAATAA-ATTG-TTTATT
gi|49899 : GGATA-T-GC-TTTT--T-T----T-----TTTG-G-TGAA---T-AAA-TC-TC-TAT-ATCTC-CC--TC---A-G------T-AT------C-AT-GCAATAA-A-TG-CACAT
gi|49900 : GAATA-T-GA-TTTA--T-C----T-----T--G-AGTGAA---T-AGA-T--TT-CAT-ACCTT-CC--TT---A-C------T-AT------C-AT-GCCATAA-T-TG-TA
gi|49901 : GATTA-T-GA-GTTC--T-C----TCTCTTA--C-GTT-AA---T-AAA-TC-TT-CAT-AACCA-CC--TCCCCA-T------T-GC------C-GT-GCAATAA-A-TG-TATACT
gi|49902 : AATT-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-AT-CAT-ATCCC-TC--AA---A-C------T------------T-GCAACAA-A-T--TAT
gi|49903 : AATA-T-GG-TTTT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-ATCTC-CC--TC---A-C------T-ACATGTATC-AT-GCAATAA-ATTG-TTTATT
gi|49904 : AAAA-T-TA-TTTT--T-C----T-----T--G-AGTGAA---T-AAA-TC-GC-CAT-ATCTC-CC--TC---A-C------T-AT------C-AT-GCAATAA-ATTG-TTTATT
gi|49905 : AAT--T-GA-TTTT----C----T-----T--G-G-TGAA---T-AAA-TC-TT-CATCATCTC-CC--TC---A-CCTCAACT-CC------C-AT-GCAATAA-A-TG-TATA
gi|49906 : ATA-T-TA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-AT-GCAATAA-A-TG-TATA
gi|49907 : ATA-T-GA-TTTT--T-C----C-----A--A-ACTGAA---T-AAA-TC-TT-CAT-ATCCA-CC--GA---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49908 : ATA-T-GG-CTTTCTT-T----T-----A--G-GCTGCA---T-AAA-TC-TC-CAT-ATCCC-CCCGTC---A-T------T-GC------C-GT-GTAATAA-A-TG-TA
gi|49909 : -GA-TTTT--T-C----T-----A--G-GCGGAA---G-AAAATC-TGGCAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49910 : A-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-AT-CC-CC--TC---A-C------T-AT------C-AT-GACATAA-A-TG-TATA
gi|49911 : -TTTT--C-C----T-----A--C-GCTGAA---T-AAA-TC-TT-CAT-ACCCG-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49912 : TTT--T-C----T-----A--G-GCTGAA---T-AAA-TT-TT-CA--ATACC-CC--CG---ACC------T-AC------C-AT-G-AAT-A-A-TG-T
gi|49913 : TT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-AC------C-GT-GCAATAA-A-TG-TATA
gi|49914 : -C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-AC------T-GT-GCAATAA-ATTG-TTTATT
gi|49915 : GAA---T-AAA-TT-TT-CAT-ATCTC-C---TC---A-C------T-GC------C-GT-GTCATAA-A-CG-TATA
Alignments
lowQualScore : 1 1 1 11 1 1111 44444444 0 111 0 1 0 0 0 0 11 111 0 333333 0 222222 0 0 0 8 0
lowQualScore : . . . .. . .... ........ . ... . . . . . . .. ... . ...... . ...... . . . . .
lowQualScore : 0 0 0 22 8 9999 11111111 9 555 9 7 9 9 9 9 22 555 9 444444 9 555555 9 9 9 9 9
consensus : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
Reference ( family-428 ) : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49870 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49871 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49872 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-GC------T-GT-GCAATAATT-TG-TTTATT
gi|49873 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCAC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49874 : GAATA-T-GA-TTTT--T-C----T-----T--A-GCTGAA---T-AAA-TC-TT-AAT-ATCTC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49875 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------T-GT-GCAATAA-ATTG-TTTATT
gi|49876 : GAATA-T-GAATTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------C-
gi|49877 : GAGTA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--TC---A-T------T-GC------C-GT-GTAATAA-A-TG-TATAT
gi|49878 : GAATA-T-GA-TTTT--TTC----T-----A--A-GCTAAA---T-AAT-TC-AT-CAT-ATCCC-CC--GA---A-C------T-GA------T-CT-GCAATAA-GTTG-TTTATT
gi|49879 : GAATA-T-GA-TTTT--T-G----T-----T--G-GGTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AT------C-AT-GCAATAA-A-TG-TATA
gi|49880 : GAACA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-----AT-ATCCC-TC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49881 : GAATA-T-GA-CTTT--C-C----T-----ATAG-ACTGAA---T-AAA-TC-AT-CAT-ATCCT-CC--GA---A-A------T-GA------C-GT-GCAATAA-ATTG-TTTATT
gi|49882 : GAATA-T-GA-TTTT--T-T----T-----A--G-GCGGAA---G-AAA-TC-TA-CAT-AT-CC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49883 : GAATA-A-AA-CTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-GT-CAT-GTCAC-CT--AA---A-C------T-TC------C-CT-GCAATAA-A-
gi|49884 : GAATA-T-GA-TTTT--C-C----T-----T--G-GCTTAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AC------C-GT-GC-TTAA-A-TG-TATA
gi|49885 : GAATA-T-GA-TTAT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CA--GA---A-C------T-GC------T-GT-GAAATAA-ATTG-TTTATT
gi|49886 : GAATA-T-GA-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TA-TC-CAT-ATCTC-CC--TC---A-C------A-AT------C-AT-GCAATAA-A-TG-TATA
gi|49887 : GAATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAATTC-TC-CAT-ATCCC-CC--TC---A-T------T-G-------C-GT-GCGATAA-A-TG--ATAT
gi|49888 : GAATA-T-GG-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TC-CAT-GTCCC-CC--GA---A-CT-----T-TC------C-GT-GCAATAA-ATTG-TTTATT
gi|49889 : GAATA-T-GG-TTCT--T-T----T-----A--C-GTTGAGAATT-GAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TGCTATAT
gi|49890 : GAATA-T-TG-TTGT--T-CATTTT-----A--ACGTTGAA---TTGAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49891 : GGATA-T-GG-TTCT--C-T----T-----A--C-GTTGAA---T-AAA-TC-TT-CAT-ACCCCGCC--TC---A-T------T-GC------CGGT-GCAATAA-A-TG-TAAATT
gi|49892 : GAGTA-T-GA-TTTT--T-T----TT----G--G-GGGGAA---T-GAA-TT-TT-CAA-ATCTC-CC--TT---A-C------T-AT------C-AT-GCAATAA-A-TG-TATATT
gi|49893 : GAATA-TTGG-CTCT--T------T-----A--G-GCTGAA---T-AAA-CCTTT-CAT-ACCCC-CC--TC---A-T------TGGC------C-GT-GCAATAA-A-TG-TA
gi|49894 : GAATA-T-GA-TTTT--T-C----T-----A--G-GTTGAA---T-AAA-TC-AT-CAT-ATCCC-CC--GA---A-C------T-TC------T-GT-ACAATAT-A-
gi|49895 : GAATAAT-GG-TTCT--T-T----T-----A--A-GCTGAA---T-AAA-TC-TC-CAT-AT--C-CC--TC---A-T------T-GC------C-GTGGCAATAA-A-TG--ATAT
gi|49896 : GGATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAT-CC-TT-CAT-ATCCT-CC--CT---A--------T-GC------C-GT-G-AATAA-A-TG-TATA
gi|49897 : GAATA-T-GA-GTTT--T------T-----AT-G-GCTGAA---C-AAA-TC-TT-CAT-ATCCC-CT--GA---A-C------T-AC------C-GT-GCAACAA-ATTG-TTTAT
gi|49898 : GAATA-T-GA-TTTT--TTC----T-----T--G-AGTGAA---T-AGA-TC-TC-CAT-ATCTC-CC--GA---A-C------A-TT------C-AT-GCAATAA-ATTG-TTTATT
gi|49899 : GGATA-T-GC-TTTT--T-T----T-----TTTG-G-TGAA---T-AAA-TC-TC-TAT-ATCTC-CC--TC---A-G------T-AT------C-AT-GCAATAA-A-TG-CACAT
gi|49900 : GAATA-T-GA-TTTA--T-C----T-----T--G-AGTGAA---T-AGA-T--TT-CAT-ACCTT-CC--TT---A-C------T-AT------C-AT-GCCATAA-T-TG-TA
gi|49901 : GATTA-T-GA-GTTC--T-C----TCTCTTA--C-GTT-AA---T-AAA-TC-TT-CAT-AACCA-CC--TCCCCA-T------T-GC------C-GT-GCAATAA-A-TG-TATACT
gi|49902 : AATT-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-AT-CAT-ATCCC-TC--AA---A-C------T------------T-GCAACAA-A-T--TAT
gi|49903 : AATA-T-GG-TTTT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-ATCTC-CC--TC---A-C------T-ACATGTATC-AT-GCAATAA-ATTG-TTTATT
gi|49904 : AAAA-T-TA-TTTT--T-C----T-----T--G-AGTGAA---T-AAA-TC-GC-CAT-ATCTC-CC--TC---A-C------T-AT------C-AT-GCAATAA-ATTG-TTTATT
gi|49905 : AAT--T-GA-TTTT----C----T-----T--G-G-TGAA---T-AAA-TC-TT-CATCATCTC-CC--TC---A-CCTCAACT-CC------C-AT-GCAATAA-A-TG-TATA
gi|49906 : ATA-T-TA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-AT-GCAATAA-A-TG-TATA
gi|49907 : ATA-T-GA-TTTT--T-C----C-----A--A-ACTGAA---T-AAA-TC-TT-CAT-ATCCA-CC--GA---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49908 : ATA-T-GG-CTTTCTT-T----T-----A--G-GCTGCA---T-AAA-TC-TC-CAT-ATCCC-CCCGTC---A-T------T-GC------C-GT-GTAATAA-A-TG-TA
gi|49909 : -GA-TTTT--T-C----T-----A--G-GCGGAA---G-AAAATC-TGGCAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49910 : A-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-AT-CC-CC--TC---A-C------T-AT------C-AT-GACATAA-A-TG-TATA
gi|49911 : -TTTT--C-C----T-----A--C-GCTGAA---T-AAA-TC-TT-CAT-ACCCG-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49912 : TTT--T-C----T-----A--G-GCTGAA---T-AAA-TT-TT-CA--ATACC-CC--CG---ACC------T-AC------C-AT-G-AAT-A-A-TG-T
gi|49913 : TT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-AC------C-GT-GCAATAA-A-TG-TATA
gi|49914 : -C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-AC------T-GT-GCAATAA-ATTG-TTTATT
gi|49915 : GAA---T-AAA-TT-TT-CAT-ATCTC-C---TC---A-C------T-GC------C-GT-GTCATAA-A-CG-TATA
blockSeqs : A T CT T ATTT CTCTTA AAT T CG CCC CTCAAC ATGTAT T
blockSeqs : . . . T . ATA . A . . T . T
blockSeqs : . . . . . TTT . . . . . . T
blockSeqs : . . . . . TG . . . . . . T
blockSeqs : . . . . . AT . . . . . . T
blockSeqs : . . . . . A . . . . . . T
blockSeqs : . . . . . A . . . . . . T
blockSeqs : . . . . . A . . . . . . T
blockSeqs : . . . . . T . . . . . . T
blockSeqs : . . . . . A . . . . . . T
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . . A . . . . . . .
blockSeqs : . . . . A . . . . . . .
blockSeqs : . . . T . . . . . . .
blockSeqs : . . . A . . . . . . .
blockSeqs : . . . A . . . . . . .
blockSeqs : . . . A . . . . . . .
blockSeqs : . . A . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
finalCons : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
Alignments
lowQualScore : 1 1 1 11 1 1111 44444444 0 111 0 1 0 0 0 0 11 111 0 333333 0 222222 0 0 0 8 0
lowQualScore : . . . .. . .... ........ . ... . . . . . . .. ... . ...... . ...... . . . . .
lowQualScore : 0 0 0 22 8 9999 11111111 9 555 9 7 9 9 9 9 22 555 9 444444 9 555555 9 9 9 9 9
consensus : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
Reference ( family-428 ) : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49870 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49871 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49872 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-GC------T-GT-GCAATAATT-TG-TTTATT
gi|49873 : GAATA-T-GA-TTTT--C-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCAC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49874 : GAATA-T-GA-TTTT--T-C----T-----T--A-GCTGAA---T-AAA-TC-TT-AAT-ATCTC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49875 : GAATA-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------T-GT-GCAATAA-ATTG-TTTATT
gi|49876 : GAATA-T-GAATTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--GA---A-C------T-GC------C-
gi|49877 : GAGTA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--TC---A-T------T-GC------C-GT-GTAATAA-A-TG-TATAT
gi|49878 : GAATA-T-GA-TTTT--TTC----T-----A--A-GCTAAA---T-AAT-TC-AT-CAT-ATCCC-CC--GA---A-C------T-GA------T-CT-GCAATAA-GTTG-TTTATT
gi|49879 : GAATA-T-GA-TTTT--T-G----T-----T--G-GGTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AT------C-AT-GCAATAA-A-TG-TATA
gi|49880 : GAACA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAA-TC-----AT-ATCCC-TC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49881 : GAATA-T-GA-CTTT--C-C----T-----ATAG-ACTGAA---T-AAA-TC-AT-CAT-ATCCT-CC--GA---A-A------T-GA------C-GT-GCAATAA-ATTG-TTTATT
gi|49882 : GAATA-T-GA-TTTT--T-T----T-----A--G-GCGGAA---G-AAA-TC-TA-CAT-AT-CC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49883 : GAATA-A-AA-CTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-GT-CAT-GTCAC-CT--AA---A-C------T-TC------C-CT-GCAATAA-A-
gi|49884 : GAATA-T-GA-TTTT--C-C----T-----T--G-GCTTAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-AC------C-GT-GC-TTAA-A-TG-TATA
gi|49885 : GAATA-T-GA-TTAT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CA--GA---A-C------T-GC------T-GT-GAAATAA-ATTG-TTTATT
gi|49886 : GAATA-T-GA-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TA-TC-CAT-ATCTC-CC--TC---A-C------A-AT------C-AT-GCAATAA-A-TG-TATA
gi|49887 : GAATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAATTC-TC-CAT-ATCCC-CC--TC---A-T------T-G-------C-GT-GCGATAA-A-TG--ATAT
gi|49888 : GAATA-T-GG-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TC-CAT-GTCCC-CC--GA---A-CT-----T-TC------C-GT-GCAATAA-ATTG-TTTATT
gi|49889 : GAATA-T-GG-TTCT--T-T----T-----A--C-GTTGAGAATT-GAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TGCTATAT
gi|49890 : GAATA-T-TG-TTGT--T-CATTTT-----A--ACGTTGAA---TTGAA-TC-TT-CAT-ATCCC-CC--TC---A-T------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49891 : GGATA-T-GG-TTCT--C-T----T-----A--C-GTTGAA---T-AAA-TC-TT-CAT-ACCCCGCC--TC---A-T------T-GC------CGGT-GCAATAA-A-TG-TAAATT
gi|49892 : GAGTA-T-GA-TTTT--T-T----TT----G--G-GGGGAA---T-GAA-TT-TT-CAA-ATCTC-CC--TT---A-C------T-AT------C-AT-GCAATAA-A-TG-TATATT
gi|49893 : GAATA-TTGG-CTCT--T------T-----A--G-GCTGAA---T-AAA-CCTTT-CAT-ACCCC-CC--TC---A-T------TGGC------C-GT-GCAATAA-A-TG-TA
gi|49894 : GAATA-T-GA-TTTT--T-C----T-----A--G-GTTGAA---T-AAA-TC-AT-CAT-ATCCC-CC--GA---A-C------T-TC------T-GT-ACAATAT-A-
gi|49895 : GAATAAT-GG-TTCT--T-T----T-----A--A-GCTGAA---T-AAA-TC-TC-CAT-AT--C-CC--TC---A-T------T-GC------C-GTGGCAATAA-A-TG--ATAT
gi|49896 : GGATA-T-GG-TTCT--T-T----T-----A--G-GCTGAA---T-AAT-CC-TT-CAT-ATCCT-CC--CT---A--------T-GC------C-GT-G-AATAA-A-TG-TATA
gi|49897 : GAATA-T-GA-GTTT--T------T-----AT-G-GCTGAA---C-AAA-TC-TT-CAT-ATCCC-CT--GA---A-C------T-AC------C-GT-GCAACAA-ATTG-TTTAT
gi|49898 : GAATA-T-GA-TTTT--TTC----T-----T--G-AGTGAA---T-AGA-TC-TC-CAT-ATCTC-CC--GA---A-C------A-TT------C-AT-GCAATAA-ATTG-TTTATT
gi|49899 : GGATA-T-GC-TTTT--T-T----T-----TTTG-G-TGAA---T-AAA-TC-TC-TAT-ATCTC-CC--TC---A-G------T-AT------C-AT-GCAATAA-A-TG-CACAT
gi|49900 : GAATA-T-GA-TTTA--T-C----T-----T--G-AGTGAA---T-AGA-T--TT-CAT-ACCTT-CC--TT---A-C------T-AT------C-AT-GCCATAA-T-TG-TA
gi|49901 : GATTA-T-GA-GTTC--T-C----TCTCTTA--C-GTT-AA---T-AAA-TC-TT-CAT-AACCA-CC--TCCCCA-T------T-GC------C-GT-GCAATAA-A-TG-TATACT
gi|49902 : AATT-T-GA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-AT-CAT-ATCCC-TC--AA---A-C------T------------T-GCAACAA-A-T--TAT
gi|49903 : AATA-T-GG-TTTT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-ATCTC-CC--TC---A-C------T-ACATGTATC-AT-GCAATAA-ATTG-TTTATT
gi|49904 : AAAA-T-TA-TTTT--T-C----T-----T--G-AGTGAA---T-AAA-TC-GC-CAT-ATCTC-CC--TC---A-C------T-AT------C-AT-GCAATAA-ATTG-TTTATT
gi|49905 : AAT--T-GA-TTTT----C----T-----T--G-G-TGAA---T-AAA-TC-TT-CATCATCTC-CC--TC---A-CCTCAACT-CC------C-AT-GCAATAA-A-TG-TATA
gi|49906 : ATA-T-TA-TTTT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-GC------C-AT-GCAATAA-A-TG-TATA
gi|49907 : ATA-T-GA-TTTT--T-C----C-----A--A-ACTGAA---T-AAA-TC-TT-CAT-ATCCA-CC--GA---A-C------T-GC------C-GT-GCAATAA-A-TG-TATA
gi|49908 : ATA-T-GG-CTTTCTT-T----T-----A--G-GCTGCA---T-AAA-TC-TC-CAT-ATCCC-CCCGTC---A-T------T-GC------C-GT-GTAATAA-A-TG-TA
gi|49909 : -GA-TTTT--T-C----T-----A--G-GCGGAA---G-AAAATC-TGGCAT-ATCCC-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TTTA
gi|49910 : A-TATT--T-C----T-----T--G-GGTGAA---T-AAA-TC-TC-CAT-AT-CC-CC--TC---A-C------T-AT------C-AT-GACATAA-A-TG-TATA
gi|49911 : -TTTT--C-C----T-----A--C-GCTGAA---T-AAA-TC-TT-CAT-ACCCG-CC--TC---A-C------T-GC------C-GT-GCAATAA-A-TG-TATATT
gi|49912 : TTT--T-C----T-----A--G-GCTGAA---T-AAA-TT-TT-CA--ATACC-CC--CG---ACC------T-AC------C-AT-G-AAT-A-A-TG-T
gi|49913 : TT--T-C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATCCC-CC--TC---A-C------T-AC------C-GT-GCAATAA-A-TG-TATA
gi|49914 : -C----T-----A--G-GCTGAA---T-AAA-TC-TT-CAT-ATTCC-CC--GA---A-C------T-AC------T-GT-GCAATAA-ATTG-TTTATT
gi|49915 : GAA---T-AAA-TT-TT-CAT-ATCTC-C---TC---A-C------T-GC------C-GT-GTCATAA-A-CG-TATA