lowQualScore : 1 444444 444444444444 0 1111 3 22 0 1 0 0 1 333
lowQualScore : . ...... ............ . .... . .. . . . . . ...
lowQualScore : 7 000000 444444444444 9 8888 0 11 9 8 9 9 9 111
consensus : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
Reference ( gi|94454 ) : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94458 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94459 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--GCGCCTCTtc
gi|94457 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAAATAT-A-T-TTGGAC-TG-G--TTGCCTCTtc
gi|94463 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTtc
gi|94462 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTtc
gi|94469 : TAATCT-CAGTGAGAT--G------TA-----C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTTTtc
gi|94461 : TAATCT-CAGAGAGATTCA------T------C-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCT
gi|94472 : TAATCT-CAGTGAGAATCG------T------C-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TAGCCTCTt
gi|94460 : TAATCT-CAGCGAGATTCC------T------T-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTt
gi|94468 : TAATCT-TAGTGAGATTCG------T------C-----A-A----GGCT-A--AT-A-T-TAGGAC-TA-G--TCGCCTCTtc
gi|94465 : TAATCT-CAGCGAGATTCG------T------C-----A-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCTt
gi|94467 : TAATCT-CAGCGAGATTCGTCGAGAT------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-A--TCGCCTCTt
gi|94475 : TAATCT-CAGTGAGATG-G------T------A-----G-A----GGCTAA--AT-A-T-TTGAAC-TG-G--TCGCCTTTt
gi|94477 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94464 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCTAAT-AT---T-TTGGAC-TG-G---CGCC
gi|94466 : TAATTA-CAGCGAGATTCG------T------C-----G-A----GGCTGA--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94455 : TAATCT-CAGCAAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTTGAC-TG-A--TCGtc
gi|94482 : TAATCC-CAGTGAGATTTG------T------C-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-C--ATGCCTCT
gi|94476 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTAGAC-TG-A--TCG-CTCT
gi|94484 : TAATCT-CAGTGAGATTGG------TAGACTACTA---G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCGTC
gi|94478 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94456 : TAATCT-CAGCGAGATTTG------T------C-----G-A----GGCTAA--AT-A-T-TTAGAC-T
gi|94470 : TAATCA-CAGCGAGATTCG------T------C-----G-A----GGCT-A--AT-G-T-CTGGAG-TG-G--TTGCCTCT
gi|94479 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-ATT-TTGGAC-TG-G--TCG-CTCTtc
gi|94483 : TAATTG-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-GTGGAC-AGTG--T-GCCTCT
gi|94474 : TAATAT-CAGCGAGATTCG------T------C-----GAA----GGCTGA--AT-A-T-TTTGAC-TG-A---CGCCTCTtc
gi|94473 : TAATCT-CGGCGAGATTCG------T------T-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--Ttc
gi|94487 : TAATCT-CAGTGAGGATGG------T------A-----A-A----GGCTAA--AT-A-T-TTGGAC-TG-G--T-GCCT
gi|94481 : TAATCT-CAGCGAGATTCATAT---T------C-----A-A----GGCAAA--AT-ATT-TTGGAC-TG-G--TCACCTTT
gi|94485 : TAATCT-CAGAGAGATG-G------T------A-----A-A----GGCTAA--ATTA-T-TTGGAC-TG-G--TCGCCTTTt
gi|94480 : TAATCT-CAGCGAGATTCA------T------C-----G-A----GGCTTA--GT-A-A-TAGGAC-TG-AGCTCGCCTCTt
gi|94471 : TAATCT-CCGTGAGATTGG------T------A-----G-A----CGCTAA--AT-A-T-TTGGAC-TGAA--TCG-CTCTtc
gi|94486 : TAATCT-CAGTGAGA-TGG------T------A-----A-A----GGCTAA--AT-A-TGGTGGAC-TG-GA-TCGCCTTT
gi|94490 : TAATCT-CAGTGAGATTCG------A------C-----A-A----GGCTAA--AT-A-T-TCAGA
gi|94489 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTGA--A
gi|94491 : TAATCT-CAGCGATATTTG------T------C-----G-G----GGCTGG--AC-A-T-TTGGAC-
gi|94488 : TAATAT-CAGCGAAATTCG------T------C-----A-A----GGCGAA--AT-A-G-TCAGAC-TG-A---CGCATCT
gi|94492 : TAATCT-CAGCAAGAT-CG------TT-----C-----G-A----TGCTGA--TT-A-T-TTGGAC-TG-A--T-GCCTtc
gi|94493 : AGTCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94494 : AATCT-CAGCGAGATTTG------T------T-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-tc
gi|94495 : AATTT-CGCCGAGATTCA------T------G-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94496 : ATCT-CAGCGAGATTCG------A------C-----G-A----AACT-A--AT-A-T-TGGGACTTG-G--ACTCCTCTcc
gi|94497 : TCT-CAGTGAGATTCG------T------C-----A-C----CGCTAA--AT-A-T-TTGGAC-TG-G--TCGCTTCTtc
gi|94498 : TCT-C--TGAGATTCG------T------TAAATTG-A----GGCCAA--AT-A-T-TTGGAC-TG-G--TTGCCTTTtc
gi|94499 : CT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCtc
gi|94500 : T-CGGCGAGATTCG------T------C-----A-ATTAAGGCTAA--AT-A-T-TTGGAC-TG-A--TCGCTTCT
Alignments
lowQualScore : 1 333333 444444 33333 0 1111 3 11 0 2 0 0 1 222
lowQualScore : . ...... ...... ..... . .... . .. . . . . . ...
lowQualScore : 7 999999 111111 33333 9 8888 8 22 9 6 9 9 9 888
consensus : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
Reference ( family-425 ) : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94454 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94455 : TAATCT-CAGCAAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTTGAC-TG-A--TCG
gi|94456 : TAATCT-CAGCGAGATTTG------T------C-----G-A----GGCTAA--AT-A-T-TTAGAC-T
gi|94457 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAAATAT-A-T-TTGGAC-TG-G--TTGCCTCT
gi|94458 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TCGCCTCTtc
gi|94459 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--GCGCCTCTtc
gi|94460 : TAATCT-CAGCGAGATTCC------T------T-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94461 : TAATCT-CAGAGAGATTCA------T------C-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94462 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTt
gi|94463 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTtc
gi|94464 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-ATT-TTGGAC-TG-G---CGCCtc
gi|94465 : TAATCT-CAGCGAGATTCG------T------C-----A-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94466 : TAATTA-CAGCGAGATTCG------T------C-----G-A----GGCTGA--AT-A-T-TTGGAC-TG-A---CGCCTCTt
gi|94467 : TAATCT-CAGCGAGATTCGTCGAGAT------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-A--TCGCCTCTtc
gi|94468 : TAATCT-TAGTGAGATTCG------T------C-----A-A----GGCT-A--AT-A-T-TAGGAC-TA-G--TCGCCTCTt
gi|94469 : TAATCT-CAGTGAGAT--G------TA-----C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTTTt
gi|94470 : TAATCA-CAGCGAGATTCG------T------C-----G-A----GGCT-A--AT-G-T-CTGGAG-TG-G--TTGCCTCT
gi|94471 : TAATCT-CCGTGAGATTGG------T------A-----G-A----CGCTAA--AT-A-T-TTGGAC-TGAA--TCG-CTCTtc
gi|94472 : TAATCT-CAGTGAGAATCG------T------C-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TAGCCTCT
gi|94473 : TAATCT-CGGCGAGATTCG------T------T-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--Tt
gi|94474 : TAATAT-CAGCGAGATTCG------T------C-----GAA----GGCTGA--AT-A-T-TTTGAC-TG-A---CGCCTCT
gi|94475 : TAATCT-CAGTGAGATG-G------T------A-----G-A----GGCTAA--AT-A-T-TTGAAC-TG-G--TCGCCTTTtc
gi|94476 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTAGAC-TG-A--TCG-CTCT
gi|94477 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94478 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94479 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-ATT-TTGGAC-TG-G--TCG-CTCT
gi|94480 : TAATCT-CAGCGAGATTCA------T------C-----G-A----GGCTTA--GT-A-A-TAGGAC-TG-AGCTCGCCTCT
gi|94481 : TAATCT-CAGCGAGATTCATAT---T------C-----A-A----GGCAAA--AT-ATT-TTGGAC-TG-G--TCACCTTTtc
gi|94482 : TAATCC-CAGTGAGATTTG------T------C-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-C--ATGCCTCTt
gi|94483 : TAATTG-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-GTGGAC-AGTG--T-GCCTCT
gi|94484 : TAATCT-CAGTGAGATTGG------TAGACTACTA---G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCGTCtc
gi|94485 : TAATCT-CAGAGAGATG-G------T------A-----A-A----GGCTAA--ATTA-T-TTGGAC-TG-G--TCGCCTTT
gi|94486 : TAATCT-CAGTGAGA-TGG------T------A-----A-A----GGCTAA--AT-A-TGGTGGAC-TG-GA-TCGCCTTTt
gi|94487 : TAATCT-CAGTGAGGATGG------T------A-----A-A----GGCTAA--AT-A-T-TTGGAC-TG-G--T-GCCT
gi|94488 : TAATAT-CAGCGAAATTCG------T------C-----A-A----GGCGAA--AT-A-G-TCAGAC-TG-A---CGCATCT
gi|94489 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTGA--Atc
gi|94490 : TAATCT-CAGTGAGATTCG------A------C-----A-A----GGCTAA--AT-A-T-TCAGA
gi|94491 : TAATCT-CAGCGATATTTG------T------C-----G-G----GGCTGG--AC-A-T-TTGGAC-
gi|94492 : TAATCT-CAGCAAGAT-CG------TT-----C-----G-A----TGCTGA--TT-A-T-TTGGAC-TG-A--T-GCCT
gi|94493 : AGTCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94494 : AATCT-CAGCGAGATTTG------T------T-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-tc
gi|94495 : AATTT-CGCCGAGATTCA------T------G-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94496 : ATCT-CAGCGAGATTCG------A------C-----G-A----AACT-A--AT-A-T-TGGGACTTG-G--ACTCCTCTcc
gi|94497 : TCT-CAGTGAGATTCG------T------C-----A-C----CGCTAA--AT-A-T-TTGGAC-TG-G--TCGCTTCTtc
gi|94498 : TCT-C--TGAGATTCG------T------TAAATTG-A----GGCCAA--AT-A-T-TTGGAC-TG-G--TTGCCTTTtc
gi|94499 : CT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCtc
gi|94500 : T-CGGCGAGATTCG------T------C-----A-ATTAAGGCTAA--AT-A-T-TTGGAC-TG-A--TCGCTTCT
Alignments
lowQualScore : 1 333333 444444 33333 0 1111 3 11 0 2 0 0 1 222
lowQualScore : . ...... ...... ..... . .... . .. . . . . . ...
lowQualScore : 7 999999 111111 33333 9 8888 8 22 9 6 9 9 9 888
consensus : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
Reference ( family-425 ) : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94454 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94455 : TAATCT-CAGCAAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTTGAC-TG-A--TCG
gi|94456 : TAATCT-CAGCGAGATTTG------T------C-----G-A----GGCTAA--AT-A-T-TTAGAC-T
gi|94457 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAAATAT-A-T-TTGGAC-TG-G--TTGCCTCT
gi|94458 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TCGCCTCTtc
gi|94459 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--GCGCCTCTtc
gi|94460 : TAATCT-CAGCGAGATTCC------T------T-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94461 : TAATCT-CAGAGAGATTCA------T------C-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94462 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTt
gi|94463 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTtc
gi|94464 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-ATT-TTGGAC-TG-G---CGCCtc
gi|94465 : TAATCT-CAGCGAGATTCG------T------C-----A-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94466 : TAATTA-CAGCGAGATTCG------T------C-----G-A----GGCTGA--AT-A-T-TTGGAC-TG-A---CGCCTCTt
gi|94467 : TAATCT-CAGCGAGATTCGTCGAGAT------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-A--TCGCCTCTtc
gi|94468 : TAATCT-TAGTGAGATTCG------T------C-----A-A----GGCT-A--AT-A-T-TAGGAC-TA-G--TCGCCTCTt
gi|94469 : TAATCT-CAGTGAGAT--G------TA-----C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTTTt
gi|94470 : TAATCA-CAGCGAGATTCG------T------C-----G-A----GGCT-A--AT-G-T-CTGGAG-TG-G--TTGCCTCT
gi|94471 : TAATCT-CCGTGAGATTGG------T------A-----G-A----CGCTAA--AT-A-T-TTGGAC-TGAA--TCG-CTCTtc
gi|94472 : TAATCT-CAGTGAGAATCG------T------C-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TAGCCTCT
gi|94473 : TAATCT-CGGCGAGATTCG------T------T-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--Tt
gi|94474 : TAATAT-CAGCGAGATTCG------T------C-----GAA----GGCTGA--AT-A-T-TTTGAC-TG-A---CGCCTCT
gi|94475 : TAATCT-CAGTGAGATG-G------T------A-----G-A----GGCTAA--AT-A-T-TTGAAC-TG-G--TCGCCTTTtc
gi|94476 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTAGAC-TG-A--TCG-CTCT
gi|94477 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94478 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94479 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-ATT-TTGGAC-TG-G--TCG-CTCT
gi|94480 : TAATCT-CAGCGAGATTCA------T------C-----G-A----GGCTTA--GT-A-A-TAGGAC-TG-AGCTCGCCTCT
gi|94481 : TAATCT-CAGCGAGATTCATAT---T------C-----A-A----GGCAAA--AT-ATT-TTGGAC-TG-G--TCACCTTTtc
gi|94482 : TAATCC-CAGTGAGATTTG------T------C-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-C--ATGCCTCTt
gi|94483 : TAATTG-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-GTGGAC-AGTG--T-GCCTCT
gi|94484 : TAATCT-CAGTGAGATTGG------TAGACTACTA---G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCGTCtc
gi|94485 : TAATCT-CAGAGAGATG-G------T------A-----A-A----GGCTAA--ATTA-T-TTGGAC-TG-G--TCGCCTTT
gi|94486 : TAATCT-CAGTGAGA-TGG------T------A-----A-A----GGCTAA--AT-A-TGGTGGAC-TG-GA-TCGCCTTTt
gi|94487 : TAATCT-CAGTGAGGATGG------T------A-----A-A----GGCTAA--AT-A-T-TTGGAC-TG-G--T-GCCT
gi|94488 : TAATAT-CAGCGAAATTCG------T------C-----A-A----GGCGAA--AT-A-G-TCAGAC-TG-A---CGCATCT
gi|94489 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTGA--Atc
gi|94490 : TAATCT-CAGTGAGATTCG------A------C-----A-A----GGCTAA--AT-A-T-TCAGA
gi|94491 : TAATCT-CAGCGATATTTG------T------C-----G-G----GGCTGG--AC-A-T-TTGGAC-
gi|94492 : TAATCT-CAGCAAGAT-CG------TT-----C-----G-A----TGCTGA--TT-A-T-TTGGAC-TG-A--T-GCCT
gi|94493 : AGTCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94494 : AATCT-CAGCGAGATTTG------T------T-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-tc
gi|94495 : AATTT-CGCCGAGATTCA------T------G-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94496 : ATCT-CAGCGAGATTCG------A------C-----G-A----AACT-A--AT-A-T-TGGGACTTG-G--ACTCCTCTcc
gi|94497 : TCT-CAGTGAGATTCG------T------C-----A-C----CGCTAA--AT-A-T-TTGGAC-TG-G--TCGCTTCTtc
gi|94498 : TCT-C--TGAGATTCG------T------TAAATTG-A----GGCCAA--AT-A-T-TTGGAC-TG-G--TTGCCTTTtc
gi|94499 : CT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCtc
gi|94500 : T-CGGCGAGATTCG------T------C-----A-ATTAAGGCTAA--AT-A-T-TTGGAC-TG-A--TCGCTTCT
blockSeqs : A TCGAGA AGACTA AAATT TTAA A AT T A GCT
blockSeqs : A TAT A TA . A . T T AT
blockSeqs : . . T . . A . T . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . G
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . G . . . C
blockSeqs : . . . . . A . . . C
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . T . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . A
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . A . . . A
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . G . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . T
blockSeqs : . . . . . A . . . .
blockSeqs : . . . . . A . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
finalCons : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
Alignments
lowQualScore : 1 333333 444444 33333 0 1111 3 11 0 2 0 0 1 222
lowQualScore : . ...... ...... ..... . .... . .. . . . . . ...
lowQualScore : 7 999999 111111 33333 9 8888 8 22 9 6 9 9 9 888
consensus : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
Reference ( family-425 ) : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94454 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94455 : TAATCT-CAGCAAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTTGAC-TG-A--TCG
gi|94456 : TAATCT-CAGCGAGATTTG------T------C-----G-A----GGCTAA--AT-A-T-TTAGAC-T
gi|94457 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTAAATAT-A-T-TTGGAC-TG-G--TTGCCTCT
gi|94458 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TCGCCTCTtc
gi|94459 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-G--GCGCCTCTtc
gi|94460 : TAATCT-CAGCGAGATTCC------T------T-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94461 : TAATCT-CAGAGAGATTCA------T------C-----G-A----GACTAA--AT-A-T-TTGGAC-TG-G--TTGTCTCTtc
gi|94462 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTt
gi|94463 : TAATCTACAGTGAGATTCG------T------C-----G-A----GGCTAC--AT-A-T-TTTGAC-TG-G--CCGCCTCTtc
gi|94464 : TAATCT-CAGTGAGATTCG------T------C-----G-A----GGCT-A--AT-ATT-TTGGAC-TG-G---CGCCtc
gi|94465 : TAATCT-CAGCGAGATTCG------T------C-----A-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94466 : TAATTA-CAGCGAGATTCG------T------C-----G-A----GGCTGA--AT-A-T-TTGGAC-TG-A---CGCCTCTt
gi|94467 : TAATCT-CAGCGAGATTCGTCGAGAT------C-----G-A----GGCT-A--AT-A-T-TTGGAC-TG-A--TCGCCTCTtc
gi|94468 : TAATCT-TAGTGAGATTCG------T------C-----A-A----GGCT-A--AT-A-T-TAGGAC-TA-G--TCGCCTCTt
gi|94469 : TAATCT-CAGTGAGAT--G------TA-----C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTTTt
gi|94470 : TAATCA-CAGCGAGATTCG------T------C-----G-A----GGCT-A--AT-G-T-CTGGAG-TG-G--TTGCCTCT
gi|94471 : TAATCT-CCGTGAGATTGG------T------A-----G-A----CGCTAA--AT-A-T-TTGGAC-TGAA--TCG-CTCTtc
gi|94472 : TAATCT-CAGTGAGAATCG------T------C-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--TAGCCTCT
gi|94473 : TAATCT-CGGCGAGATTCG------T------T-----A-A----GGCT-A--AT-A-T-TTGGAC-TG-G--Tt
gi|94474 : TAATAT-CAGCGAGATTCG------T------C-----GAA----GGCTGA--AT-A-T-TTTGAC-TG-A---CGCCTCT
gi|94475 : TAATCT-CAGTGAGATG-G------T------A-----G-A----GGCTAA--AT-A-T-TTGAAC-TG-G--TCGCCTTTtc
gi|94476 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTAGAC-TG-A--TCG-CTCT
gi|94477 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCTAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94478 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-A-T-TTGGAC-TG-A--TCG-CTCT
gi|94479 : TAATCT-CAGTGAGATTGG------T------A-----G-A----AGCGAA--AT-ATT-TTGGAC-TG-G--TCG-CTCT
gi|94480 : TAATCT-CAGCGAGATTCA------T------C-----G-A----GGCTTA--GT-A-A-TAGGAC-TG-AGCTCGCCTCT
gi|94481 : TAATCT-CAGCGAGATTCATAT---T------C-----A-A----GGCAAA--AT-ATT-TTGGAC-TG-G--TCACCTTTtc
gi|94482 : TAATCC-CAGTGAGATTTG------T------C-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-C--ATGCCTCTt
gi|94483 : TAATTG-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-GTGGAC-AGTG--T-GCCTCT
gi|94484 : TAATCT-CAGTGAGATTGG------TAGACTACTA---G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCGTCtc
gi|94485 : TAATCT-CAGAGAGATG-G------T------A-----A-A----GGCTAA--ATTA-T-TTGGAC-TG-G--TCGCCTTT
gi|94486 : TAATCT-CAGTGAGA-TGG------T------A-----A-A----GGCTAA--AT-A-TGGTGGAC-TG-GA-TCGCCTTTt
gi|94487 : TAATCT-CAGTGAGGATGG------T------A-----A-A----GGCTAA--AT-A-T-TTGGAC-TG-G--T-GCCT
gi|94488 : TAATAT-CAGCGAAATTCG------T------C-----A-A----GGCGAA--AT-A-G-TCAGAC-TG-A---CGCATCT
gi|94489 : TAATCT-CAGCGAGATTCG------T------C-----G-A----GGCTGA--Atc
gi|94490 : TAATCT-CAGTGAGATTCG------A------C-----A-A----GGCTAA--AT-A-T-TCAGA
gi|94491 : TAATCT-CAGCGATATTTG------T------C-----G-G----GGCTGG--AC-A-T-TTGGAC-
gi|94492 : TAATCT-CAGCAAGAT-CG------TT-----C-----G-A----TGCTGA--TT-A-T-TTGGAC-TG-A--T-GCCT
gi|94493 : AGTCT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCT
gi|94494 : AATCT-CAGCGAGATTTG------T------T-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-tc
gi|94495 : AATTT-CGCCGAGATTCA------T------G-----G-A----GGCTGG--AT-A-T-TTGGAC-TG-A---CGCCTCT
gi|94496 : ATCT-CAGCGAGATTCG------A------C-----G-A----AACT-A--AT-A-T-TGGGACTTG-G--ACTCCTCTcc
gi|94497 : TCT-CAGTGAGATTCG------T------C-----A-C----CGCTAA--AT-A-T-TTGGAC-TG-G--TCGCTTCTtc
gi|94498 : TCT-C--TGAGATTCG------T------TAAATTG-A----GGCCAA--AT-A-T-TTGGAC-TG-G--TTGCCTTTtc
gi|94499 : CT-CAGTGAGATTCG------T------C-----G-A----GGCTAA--AT-A-T-TTGGAC-TG-G--TCGCCTCtc
gi|94500 : T-CGGCGAGATTCG------T------C-----A-ATTAAGGCTAA--AT-A-T-TTGGAC-TG-A--TCGCTTCT