lowQualScore : 44444444444
lowQualScore : 0 0 0 0 0000 0 0 0 33333333333 111111 1 111 2222222 0 0 1
lowQualScore : . . . . .... . . . ........... ...... . ... ....... . . .
lowQualScore : 4 8 8 8 9999 4 4 4 88888888888 999999 2 777 0000000 9 4 8
consensus : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTGC---CGT-T-GTT------CAG-CAG---TG-------GT-G-AT-TTT
Reference ( gi|108924 ) : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTGC---TGT-T-ATT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108926 : CACATCG-C-TCA-CCT-GAGTA----ACTT-T-GGC-CCTGC---TGT-T-GTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108927 : CACATCG-C-TTA-CCT-GAATG----ACCT-T-GGC-CCTGC---TGT-T-GTT------CAG-CAG---TG-------GT-G-GT-TTT
gi|108922 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTGC---CAT-T-GTT------CAG-CAG---TT-------GT-G-AT-TCT
gi|108950 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGG-CCTGC---TGT-C-ATT------CAG-CAT---TG-------GT-C-AT-TTTt
gi|108923 : CACATCA-C-TCA-CTT-GAGTG----ACCT-T-GGC-CCTGA---TGT-T-GTT------CAG-CAG---TT-------GT-G-AT-TT
gi|108932 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTTct
gi|108987 : CACATCG-T-TCA-CAT-GAGTG----ACAT-T-GGC-ACTGC---TAT-T-ATT------CAG-CAG---TG-------GT-G-AT-
gi|108936 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTgtt
gi|108938 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GTT------CAG-CAG---TG-------GT-G-AT-TT
gi|108969 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGC-CCTGC---TGT-TCATT-------AG-GAG---AG-------GT-G-AT-TTT
gi|108925 : CACATTG-C-TCA-CTT-AAGTC----ACCT-T-GGC-CCTGC---CGT-T-GTT------CAG-CAG---TT-------GT-G-AT-TTTt
gi|108946 : CACATCG-C-TCA-CTT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108945 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108944 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-A-AT-TTT
gi|108943 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------AT-G-AT-TTT
gi|108937 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GTT------TAG-CAG---TG-------GT-G-AT-TCT
gi|108953 : CACATCG-C-TCA-CCTTGAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108939 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108935 : CATATCA-C-TCA-TCC-GAGTG----ACCT-T-GGC-CCTGC---CAG-T-ATT------CAG-CAG---TG-------GT-T-AT-TTT
gi|108949 : CACATTG-C-TCA-CCT-GAGTA----ACTT-T-GAC-CCTAC---TGC-T-ATT------CAG-CAG---AT-------GT-G-AT-TTTt
gi|108960 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108956 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GGT------CAG-CAG---TG-------GC-G-AT-TT
gi|108948 : CACATCG-C-TCA-CCT-GAATG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TA-------GT-G-AT-TTT
gi|108959 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAT---TG-------GT-G-AT-TT
gi|108957 : CACATCG-C-TTA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108934 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108929 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTAT---CGT-T-GTT------CAG-CAG---att
gi|108928 : CACATCG-C-TCA-CCT-GAGTG----ACGT-T-GAC-CCTGC---CGT-T-GTT------CAG-TAG---TT-------AT-G-ATATTTatgtg
gi|108966 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CTTG----------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108975 : CACATCG-C-TCA-CCT-GAGTA----ACCT-T-GGC-CCTG-----G----A-C------CAG-CAG---TG-------GT-G-AT-TTT
gi|108968 : CACATCG-C-TCA-CCT-GAGTGACGTACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108952 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGC-CCTG----------GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108972 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGC-CTTG----------GTT------CAG-CAG---TG-------AT-G-AT-TT
gi|108988 : CACATCG-C-TCA-TCT-GATTG----ACCT-T-GGC-CCTGC----------TT------CAG-CAG---AG-------GT-G-AT-TTT
gi|108976 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGT-CCTG----------GTT------CAT-CAG---TG-------GT-G-AT-TTT
gi|108973 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGC-CCTG----------GCT------CAG-TAG---TG-------GT-G-AT-TTT
gi|108941 : CACAACA-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108961 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---CG-------GT-G-AT-TT
gi|108974 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGC-CCTG----------GCT------CAG-TAG---TG-------GT-G-AT-TT
gi|108991 : CACATCG-C-TCA-CCT-GAGTG----ACCT-C-GGC-CTGGC-----------T------CAG-CAG---TG-------GT-G-AT-TT
gi|108981 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAGGCATG-------AT-G-AT-TTT
gi|108965 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GTT------CAGAAAG---TA-------GT-G-AT-TTT
gi|108962 : CACATCG-T-TCA-CCT-GAGCG----AC-T-T-GAC-CCTGC---CGT-T-GAT------CAG-CAG---CG-------GT-G-AT-TCT
gi|108955 : CACATCG-C-ACA-CCC-GAGTG----ACCT-T-GGC-CCAGC---CGT-T-GTT------TCG-CAG---CG-------AT-G-AT-TTT
gi|108942 : CACATCG-C-TCA-CTT-GAGTG----ACGT-T-GGC-CCTGC---CGT-T-GTT------CGG-CAG---Tt
gi|108980 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGC-CCTG-----G----A-T------CAG-CAG---TG-------GT-G-AT-
gi|108971 : CACATCG-C-TCA-ACT-GAGTG----ACCT-T-GGC-CCTAC---CGT-T-TTT------CTG-CAG---CA-------GC-G-AT-
gi|108964 : CACATTG-C-TCA-CCT-GAGCA----ACCT-T-GGC-CCTGC---AAT-T-ATT------CAG-CAG---Tatt
gi|108989 : CACATCG-C-TCA-CCT-GAATG----ACTT-T-GGC-CCTG----------GGT------CAG-CGG---TG-------GT-G-AT-TTTt
gi|108990 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGC-TCTG----------GTT------CAG-TAG---TG-------GT-G-AT-TT
gi|108947 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAA---TG-------GT-G-ATATTT
gi|108951 : CACATTG-C-TTA-CCT-GAGTG----ACCT-T-GG--TCTGT---TGC-T-GTT------CGG-CAG---TT-------GT-G-AT-TTt
gi|108954 : CACATCA-C---A-CTT-GAGTG----ACCT-T-GGC-ACTGC---AAT-T-GTT------CAG-CAG---TG-------GT-G-AT-
gi|108930 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGC-CCTGC---TGT-T-GTT------CAG-CAG---TT-------GT-G-ATATTTgtt
gi|108996 : CACATCG-C-TCA-CCT-GATTG----ACCT-T-GGT-CTTGA---TG----GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108958 : CACATCG-C-TCA-CCT-CAGTG----ACCT-T-GGC-CCTGCCATTGT-T-GTT------CAC-CAG---T
gi|108997 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGC-CATG----------GGT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108995 : CACATCG-T-TCA-CCT-GAGTG----CCCT-T-GGC-CCTG----------GTT------CAG-CTG---TG-------GT-G-AT-
gi|108978 : CACATAG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTGC---CGT-T-GGTAAGTACCGG-TAG---TG-------TT-G-AT-TTT
gi|109006 : CACATCGGC-TCA-CCT-GAGTG----ACCT-T--GC-CCTG-----GC----TC------CAG-CAG---TG-------GT-G-AT-TTT
gi|108967 : CACATCG-C-TCA-C-T-GAGTG----ACCT-T-GGC-CTTG----------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|109004 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109003 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109002 : CACATCG-CCTCA-CCT-GAGTG----ACCT-T-GGT-CCTG----------GCT------CAGCCAG---TG-------GT-G-AT-TT
gi|108977 : CACATCA-CCTCA-CCT-GACTG----ACCTGT-GGC-CCTG----------GTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108993 : CACATCA-C-TCA-TCC-GAGAG----GTAT-T-GAC-CCTGC---CGT-T-AAT------CAG-CAG---TG-------GT-G-AT-TT
gi|108994 : CACATCC-C-TCA-CCT-GAGTG----ACCT-TGGGC-CCTG----------GTT------CGG-CAG---TG-------GTGG-AT-TT
gi|108992 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---T
gi|108985 : CACATTG-C-TCA-CCTAGATTG----ACCT-T-GGC-CCT-T---TGT-T-GTT------CAA-CAGGT-TT-------GT-G-AT-TTT
gi|108931 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGC-CCTGC---TGT-T-G-T------CAG-CAG---TT-------GT-G-ATATTT
gi|108933 : CACATTA-C-TCA-CCT-GAGTG----GCCT-C-AGC-CCTGC---CAT-T-GTT------TAC-CAG---TT-------GT-G-AT-CT
gi|109005 : CACATCG-C-TCA-CCC-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---T
gi|109008 : CACATCA-C-TCA-TCC-GAGTG-----CCT-T-GGC-C--G----TGT-C-GTT------CAG-CAG---TG-------GT-T-AT-TTT
gi|108940 : CACATCA-C-TAA-CCT-GAATG----ACCT-T-AGC-ACTGC---CGT-C-GTT------CAA-CAG---TT-------AT-G-AT-
gi|108999 : CACATTG-C-TCA-CCT-GAGTA----GCCT-T-GGC-CCTAC---CGT-T-GTT------CA
gi|109000 : CACATCG-C-TCA-TCT-AAATA----AC-T-T-GGC-CCCGC---TGT-T-GTG------CAG-CTG---TT-------GT-GAAT-TTT
gi|108998 : CACATCG-T-TTA-CCT-GAGTG----GCGT-T-TAC-CCTGT---CGT-T-CCT------CAG-CAG---TT-------GTGG-AT-TTTt
gi|108983 : CACATCA-C-TCA-TCT-GAGAG----ACAT-T-GAC-ACTGC---CGT-T-GTT------CAG-CA-------------CT-G-AT-TTT
gi|108986 : CACATTG-C-TCA-CCT--ATTG----ACCT-T-GGCGCCCTT---TG--T-GTT------CAA-CAG---TT-------GT-G-AT-TTT
gi|108979 : CACATCA-C-TCA-CTT-GAGTC----ACCT-T-GGC-CCTGC---CCT-T-GTT--------G-AAG---TGTT-----GT-A-AT-t
gi|109001 : CACACTA-C-TCC-CAT-GAATC----ACCT-T-AGT-CCTGC---TGT-T-GTT------CAG-CTA---TT-------GT-G-AT-TTTattt
gi|108970 : CACATCA-C-TCA-TCT-GAATG----ATAT-T-TTC-CCTGT---CAT-T-GTT------CAG-CAG---TT-------GT-G-AT-ATT
gi|109007 : CACATAA-C-TCA-CTG-GAGTG----ATTT-T-GGC-CCTGC---CAC-TAATTGTG---CAG-CAGT--TG-------AT-A-AT-TTT
gi|109048 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-TGC-CCTGC---CAT-T-GTT------CAG-CAG---TG-------GT----T-TTT
gi|109051 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GCT------CAG-CAG---TG-------GC-G-AT-TT
gi|109052 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CC--------T-T-GCT------CAG-CAA---TG-------GT-G-AT-TT
gi|109050 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTG----------GTT------TAG-CAA---TA-------GT-G-AT-TTT
gi|109049 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGC-CCTGC---CAT-T-TTT------CAG-GAG---TAACTACTTGT-G-AT-TT
gi|109053 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGC-CATGA---TGC-T-GTT------GAG-CTG---TT-------GT-G-AT-TTT
gi|109055 : ACATCG-C-TCG-CTA-AAGTG----ACCC-A-GGT-CCTGT---CGT-T-GTT------CAG-CAG---TT-------AT-G-AT-TTTt
gi|109054 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGC-CATGA---TGTCT-GTT------GAGACTG---TT-------GT-G-AT-TTT
gi|109061 : CATTG-C-TCA-TAT-GAGTG----ACCT-T-CGC-CCTGC---CAT-T-GTT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|109065 : CATCG-C-GCA-ACT-GAGTG----GCCT-T-GGC-TCTGC---CGT-T-ATT-------AA-CAG---TG-------GT-A-AT-TTTt
gi|109062 : CATTG-C-TCA-CCT-GAGTG----GCCT-T-TGC-CCTGC---CAT-T-GTT------TAG-TAG---TT-------GT-G-AT-TTt
gi|109063 : CATCG-C-TCA-TCT-GAGTG----GCCT-T-GGC-CCTAA---CCT-T-GTT------CAG-AAG---TT-------AT-G-AT-ct
gi|109064 : CACCA-C-TCA-TCA-GAGTG----ACCT-T-GGC-TTAGC---TGC-T-GTT------CAG-CAG---TT-------TT-C-AT-TTTatt
gi|109069 : TCA-T-TCA-CCA-GAGAG----ACCT-T-GGC-CCTGC---CGT-T-GTT------CAG-CAG---TT-------GT-G-AT-t
gi|109070 : CA-C-TCA-CCT-GAGTG----ATCT-T-GAC-CCTAT---CAT-T-GTT------CGG-CAG---TT-------GT-G-AT-
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|108963 ): CACATTGCTCACTTGAGTCACCTTGACCCTTCCACTGTTCAGCTGTTGTGATCTTT
Alignments
lowQualScore : 333333333333
lowQualScore : 0 0 0 0 0000 0 0 555555555555 111111 1 111 2222222 0 0 1
lowQualScore : . . . . .... . . ............ ...... . ... ....... . . .
lowQualScore : 4 8 8 8 9999 4 4 444444444444 222222 2 777 0000000 9 4 7
consensus : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
Reference ( family-206 ) : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108922 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-TCT
gi|108923 : CACATCA-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTGAT----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTt
gi|108924 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TATT------CAG-CAG---TG-------GT-G-AT-TTTct
gi|108925 : CACATTG-C-TCA-CTT-AAGTC----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTT
gi|108926 : CACATCG-C-TCA-CCT-GAGTA----ACTT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108927 : CACATCG-C-TTA-CCT-GAATG----ACCT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-GT-TTT
gi|108928 : CACATCG-C-TCA-CCT-GAGTG----ACGT-T-GACCCTGCC----GT---TGTT------CAG-TAG---TT-------AT-G-ATATTT
gi|108929 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTATC----GT---TGTT------CAG-CAG---
gi|108930 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TT-------GT-G-ATATTTatgtg
gi|108931 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TG-T------CAG-CAG---TT-------GT-G-ATATTT
gi|108932 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108933 : CACATTA-C-TCA-CCT-GAGTG----GCCT-C-AGCCCTGCC----AT---TGTT------TAC-CAG---TT-------GT-G-AT-CT
gi|108934 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108935 : CATATCA-C-TCA-TCC-GAGTG----ACCT-T-GGCCCTGCC----AG---TATT------CAG-CAG---TG-------GT-T-AT-TTTatt
gi|108936 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108937 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAG---TG-------GT-G-AT-TCT
gi|108938 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108939 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108940 : CACATCA-C-TAA-CCT-GAATG----ACCT-T-AGCACTGCC----GT---CGTT------CAA-CAG---TT-------AT-G-AT-
gi|108941 : CACAACA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108942 : CACATCG-C-TCA-CTT-GAGTG----ACGT-T-GGCCCTGCC----GT---TGTT------CGG-CAG---T
gi|108943 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------AT-G-AT-TTT
gi|108944 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-A-AT-TTT
gi|108945 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108946 : CACATCG-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108947 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAA---TG-------GT-G-ATATTT
gi|108948 : CACATCG-C-TCA-CCT-GAATG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TTTt
gi|108949 : CACATTG-C-TCA-CCT-GAGTA----ACTT-T-GACCCTACT----GC---TATT------CAG-CAG---AT-------GT-G-AT-TTT
gi|108950 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGGCCTGCT----GT---CATT------CAG-CAT---TG-------GT-C-AT-TTTt
gi|108951 : CACATTG-C-TTA-CCT-GAGTG----ACCT-T-GG-TCTGTT----GC---TGTT------CGG-CAG---TT-------GT-G-AT-TT
gi|108952 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108953 : CACATCG-C-TCA-CCTTGAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108954 : CACATCA-C---A-CTT-GAGTG----ACCT-T-GGCACTGCA----AT---TGTT------CAG-CAG---TG-------GT-G-AT-
gi|108955 : CACATCG-C-ACA-CCC-GAGTG----ACCT-T-GGCCCAGCC----GT---TGTT------TCG-CAG---CG-------AT-G-AT-TTTgtt
gi|108956 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GGT------CAG-CAG---TG-------GC-G-AT-TTt
gi|108957 : CACATCG-C-TTA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108958 : CACATCG-C-TCA-CCT-CAGTG----ACCT-T-GGCCCTGCCATT-GT---TGTT------CAC-CAG---T
gi|108959 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAT---TG-------GT-G-AT-TTt
gi|108960 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108961 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---CG-------GT-G-AT-TT
gi|108962 : CACATCG-T-TCA-CCT-GAGCG----AC-T-T-GACCCTGCC----GT---TGAT------CAG-CAG---CG-------GT-G-AT-TCT
gi|108963 : CACATTG-C-TCA-CTT-GAGTC----ACCT-T-GACCCTTCC----AC---TGTT------CAG-CTG---TT-------GT-G-AT-CTT
gi|108964 : CACATTG-C-TCA-CCT-GAGCA----ACCT-T-GGCCCTGCA----AT---TATT------CAG-CAG---Tt
gi|108965 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAGAAAG---TA-------GT-G-AT-TTTt
gi|108966 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108967 : CACATCG-C-TCA-C-T-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108968 : CACATCG-C-TCA-CCT-GAGTGACGTACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108969 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TCAT------TAG-GAG---AG-------GT-G-AT-TTT
gi|108970 : CACATCA-C-TCA-TCT-GAATG----ATAT-T-TTCCCTGTC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-ATTt
gi|108971 : CACATCG-C-TCA-ACT-GAGTG----ACCT-T-GGCCCTACC----GT---TTTT------CTG-CAG---CA-------GC-G-AT-
gi|108972 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCTTG------------GTT------CAG-CAG---TG-------AT-G-AT-TTatt
gi|108973 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TTT
gi|108974 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TT
gi|108975 : CACATCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCCTG------------GAC------CAG-CAG---TG-------GT-G-AT-TTT
gi|108976 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGTCCTG------------GTT------CAT-CAG---TG-------GT-G-AT-TTT
gi|108977 : CACATCA-CCTCA-CCT-GACTG----ACCTGT-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108978 : CACATAG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGGTAAGTACCGG-TAG---TG-------TT-G-AT-TTT
gi|108979 : CACATCA-C-TCA-CTT-GAGTC----ACCT-T-GGCCCTGCC----CT---TGTT--------G-AAG---TGTT-----GT-A-AT-
gi|108980 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GAT------CAG-CAG---TG-------GT-G-AT-attt
gi|108981 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAGGCATG-------AT-G-AT-TTT
gi|108983 : CACATCA-C-TCA-TCT-GAGAG----ACAT-T-GACACTGCC----GT---TGTT------CAG-CA-------------CT-G-AT-TTT
gi|108985 : CACATTG-C-TCA-CCTAGATTG----ACCT-T-GGCCCT-TT----GT---TGTT------CAA-CAGGT-TT-------GT-G-AT-TTT
gi|108986 : CACATTG-C-TCA-CCT--ATTG----ACCT-T-GGC---GCC----CTTTGTGTT------CAA-CAG---TT-------GT-G-AT-TTT
gi|108987 : CACATCG-T-TCA-CAT-GAGTG----ACAT-T-GGCACTGCT----AT---TATT------CAG-CAG---TG-------GT-G-AT-t
gi|108988 : CACATCG-C-TCA-TCT-GATTG----ACCT-T-GGCCCTGC------------TT------CAG-CAG---AG-------GT-G-AT-TTTgtt
gi|108989 : CACATCG-C-TCA-CCT-GAATG----ACTT-T-GGCCCTG------------GGT------CAG-CGG---TG-------GT-G-AT-TTT
gi|108990 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCTCTG------------GTT------CAG-TAG---TG-------GT-G-AT-TT
gi|108991 : CACATCG-C-TCA-CCT-GAGTG----ACCT-C-GG-CCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|108992 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|108993 : CACATCA-C-TCA-TCC-GAGAG----GTAT-T-GACCCTGCC----GT---TAAT------CAG-CAG---TG-------GT-G-AT-TT
gi|108994 : CACATCC-C-TCA-CCT-GAGTG----ACCT-TGGGCCCTG------------GTT------CGG-CAG---TG-------GTGG-AT-TT
gi|108995 : CACATCG-T-TCA-CCT-GAGTG----CCCT-T-GGCCCTG------------GTT------CAG-CTG---TG-------GT-G-AT-
gi|108996 : CACATCG-C-TCA-CCT-GATTG----ACCT-T-GGTCTTGAT----G-----GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108997 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCATG------------GGT------CAG-CAG---TG-------GT-G-AT-TT
gi|108998 : CACATCG-T-TTA-CCT-GAGTG----GCGT-T-TACCCTGTC----GT---TCCT------CAG-CAG---TT-------GTGG-AT-TTT
gi|108999 : CACATTG-C-TCA-CCT-GAGTA----GCCT-T-GGCCCTACC----GT---TGTT------CA
gi|109000 : CACATCG-C-TCA-TCT-AAATA----AC-T-T-GGCCCCGCT----GT---TGTG------CAG-CTG---TT-------GT-GAAT-TTT
gi|109001 : CACACTA-C-TCC-CAT-GAATC----ACCT-T-AGTCCTGCT----GT---TGTT------CAG-CTA---TT-------GT-G-AT-TTTt
gi|109002 : CACATCG-CCTCA-CCT-GAGTG----ACCT-T-GGTCCTG------------GCT------CAGCCAG---TG-------GT-G-AT-TT
gi|109003 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109004 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109005 : CACATCG-C-TCA-CCC-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|109006 : CACATCGGC-TCA-CCT-GAGTG----ACCT-T--GCCCTGGC-----------TC------CAG-CAG---TG-------GT-G-AT-TTT
gi|109007 : CACATAA-C-TCA-CTG-GAGTG----ATTT-T-GGCCCTGCCACTAAT---TGTG------CAG-CAGT--TG-------AT-A-AT-TTT
gi|109008 : CACATCA-C-TCA-TCC-GAGTG-----CCT-T-GGCCGTGTC----GT---T---------CAG-CAG---TG-------GT-T-AT-TTT
gi|109048 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-TGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT----T-TTT
gi|109049 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TTTT------CAG-GAG---TAACTACTTGT-G-AT-TT
gi|109050 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAA---TA-------GT-G-AT-TTT
gi|109051 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GC-G-AT-TT
gi|109052 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCC---------T---TGCT------CAG-CAA---TG-------GT-G-AT-TT
gi|109053 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GC---TGTT------GAG-CTG---TT-------GT-G-AT-TTT
gi|109054 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GTC--TGTT------GAGACTG---TT-------GT-G-AT-TTTt
gi|109055 : ACATCG-C-TCG-CTA-AAGTG----ACCC-A-GGTCCTGTC----GT---TGTT------CAG-CAG---TT-------AT-G-AT-TTTt
gi|109061 : CATTG-C-TCA-TAT-GAGTG----ACCT-T-CGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|109062 : CATTG-C-TCA-CCT-GAGTG----GCCT-T-TGCCCTGCC----AT---TGTT------TAG-TAG---TT-------GT-G-AT-TTt
gi|109063 : CATCG-C-TCA-TCT-GAGTG----GCCT-T-GGCCCTAAC----CT---TGTT------CAG-AAG---TT-------AT-G-AT-ct
gi|109064 : CACCA-C-TCA-TCA-GAGTG----ACCT-T-GGCTTAGCT----GC---TGTT------CAG-CAG---TT-------TT-C-AT-TTTatt
gi|109065 : CATCG-C-GCA-ACT-GAGTG----GCCT-T-GGCTCTGCC----GT---TATT-------AA-CAG---TG-------GT-A-AT-TTTt
gi|109069 : TCA-T-TCA-CCA-GAGAG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-t
gi|109070 : CA-C-TCA-CCT-GAGTG----ATCT-T-GACCCTATC----AT---TGTT------CGG-CAG---TT-------GT-G-AT-
Alignments
lowQualScore : 333333333333
lowQualScore : 0 0 0 0 0000 0 0 555555555555 111111 1 111 2222222 0 0 1
lowQualScore : . . . . .... . . ............ ...... . ... ....... . . .
lowQualScore : 4 8 8 8 9999 4 4 444444444444 222222 2 777 0000000 9 4 7
consensus : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
Reference ( family-206 ) : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108922 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-TCT
gi|108923 : CACATCA-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTGAT----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTt
gi|108924 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TATT------CAG-CAG---TG-------GT-G-AT-TTTct
gi|108925 : CACATTG-C-TCA-CTT-AAGTC----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTT
gi|108926 : CACATCG-C-TCA-CCT-GAGTA----ACTT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108927 : CACATCG-C-TTA-CCT-GAATG----ACCT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-GT-TTT
gi|108928 : CACATCG-C-TCA-CCT-GAGTG----ACGT-T-GACCCTGCC----GT---TGTT------CAG-TAG---TT-------AT-G-ATATTT
gi|108929 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTATC----GT---TGTT------CAG-CAG---
gi|108930 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TT-------GT-G-ATATTTatgtg
gi|108931 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TG-T------CAG-CAG---TT-------GT-G-ATATTT
gi|108932 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108933 : CACATTA-C-TCA-CCT-GAGTG----GCCT-C-AGCCCTGCC----AT---TGTT------TAC-CAG---TT-------GT-G-AT-CT
gi|108934 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108935 : CATATCA-C-TCA-TCC-GAGTG----ACCT-T-GGCCCTGCC----AG---TATT------CAG-CAG---TG-------GT-T-AT-TTTatt
gi|108936 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108937 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAG---TG-------GT-G-AT-TCT
gi|108938 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108939 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108940 : CACATCA-C-TAA-CCT-GAATG----ACCT-T-AGCACTGCC----GT---CGTT------CAA-CAG---TT-------AT-G-AT-
gi|108941 : CACAACA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108942 : CACATCG-C-TCA-CTT-GAGTG----ACGT-T-GGCCCTGCC----GT---TGTT------CGG-CAG---T
gi|108943 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------AT-G-AT-TTT
gi|108944 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-A-AT-TTT
gi|108945 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108946 : CACATCG-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108947 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAA---TG-------GT-G-ATATTT
gi|108948 : CACATCG-C-TCA-CCT-GAATG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TTTt
gi|108949 : CACATTG-C-TCA-CCT-GAGTA----ACTT-T-GACCCTACT----GC---TATT------CAG-CAG---AT-------GT-G-AT-TTT
gi|108950 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGGCCTGCT----GT---CATT------CAG-CAT---TG-------GT-C-AT-TTTt
gi|108951 : CACATTG-C-TTA-CCT-GAGTG----ACCT-T-GG-TCTGTT----GC---TGTT------CGG-CAG---TT-------GT-G-AT-TT
gi|108952 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108953 : CACATCG-C-TCA-CCTTGAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108954 : CACATCA-C---A-CTT-GAGTG----ACCT-T-GGCACTGCA----AT---TGTT------CAG-CAG---TG-------GT-G-AT-
gi|108955 : CACATCG-C-ACA-CCC-GAGTG----ACCT-T-GGCCCAGCC----GT---TGTT------TCG-CAG---CG-------AT-G-AT-TTTgtt
gi|108956 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GGT------CAG-CAG---TG-------GC-G-AT-TTt
gi|108957 : CACATCG-C-TTA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108958 : CACATCG-C-TCA-CCT-CAGTG----ACCT-T-GGCCCTGCCATT-GT---TGTT------CAC-CAG---T
gi|108959 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAT---TG-------GT-G-AT-TTt
gi|108960 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108961 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---CG-------GT-G-AT-TT
gi|108962 : CACATCG-T-TCA-CCT-GAGCG----AC-T-T-GACCCTGCC----GT---TGAT------CAG-CAG---CG-------GT-G-AT-TCT
gi|108963 : CACATTG-C-TCA-CTT-GAGTC----ACCT-T-GACCCTTCC----AC---TGTT------CAG-CTG---TT-------GT-G-AT-CTT
gi|108964 : CACATTG-C-TCA-CCT-GAGCA----ACCT-T-GGCCCTGCA----AT---TATT------CAG-CAG---Tt
gi|108965 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAGAAAG---TA-------GT-G-AT-TTTt
gi|108966 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108967 : CACATCG-C-TCA-C-T-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108968 : CACATCG-C-TCA-CCT-GAGTGACGTACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108969 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TCAT------TAG-GAG---AG-------GT-G-AT-TTT
gi|108970 : CACATCA-C-TCA-TCT-GAATG----ATAT-T-TTCCCTGTC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-ATTt
gi|108971 : CACATCG-C-TCA-ACT-GAGTG----ACCT-T-GGCCCTACC----GT---TTTT------CTG-CAG---CA-------GC-G-AT-
gi|108972 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCTTG------------GTT------CAG-CAG---TG-------AT-G-AT-TTatt
gi|108973 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TTT
gi|108974 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TT
gi|108975 : CACATCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCCTG------------GAC------CAG-CAG---TG-------GT-G-AT-TTT
gi|108976 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGTCCTG------------GTT------CAT-CAG---TG-------GT-G-AT-TTT
gi|108977 : CACATCA-CCTCA-CCT-GACTG----ACCTGT-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108978 : CACATAG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGGTAAGTACCGG-TAG---TG-------TT-G-AT-TTT
gi|108979 : CACATCA-C-TCA-CTT-GAGTC----ACCT-T-GGCCCTGCC----CT---TGTT--------G-AAG---TGTT-----GT-A-AT-
gi|108980 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GAT------CAG-CAG---TG-------GT-G-AT-attt
gi|108981 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAGGCATG-------AT-G-AT-TTT
gi|108983 : CACATCA-C-TCA-TCT-GAGAG----ACAT-T-GACACTGCC----GT---TGTT------CAG-CA-------------CT-G-AT-TTT
gi|108985 : CACATTG-C-TCA-CCTAGATTG----ACCT-T-GGCCCT-TT----GT---TGTT------CAA-CAGGT-TT-------GT-G-AT-TTT
gi|108986 : CACATTG-C-TCA-CCT--ATTG----ACCT-T-GGC---GCC----CTTTGTGTT------CAA-CAG---TT-------GT-G-AT-TTT
gi|108987 : CACATCG-T-TCA-CAT-GAGTG----ACAT-T-GGCACTGCT----AT---TATT------CAG-CAG---TG-------GT-G-AT-t
gi|108988 : CACATCG-C-TCA-TCT-GATTG----ACCT-T-GGCCCTGC------------TT------CAG-CAG---AG-------GT-G-AT-TTTgtt
gi|108989 : CACATCG-C-TCA-CCT-GAATG----ACTT-T-GGCCCTG------------GGT------CAG-CGG---TG-------GT-G-AT-TTT
gi|108990 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCTCTG------------GTT------CAG-TAG---TG-------GT-G-AT-TT
gi|108991 : CACATCG-C-TCA-CCT-GAGTG----ACCT-C-GG-CCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|108992 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|108993 : CACATCA-C-TCA-TCC-GAGAG----GTAT-T-GACCCTGCC----GT---TAAT------CAG-CAG---TG-------GT-G-AT-TT
gi|108994 : CACATCC-C-TCA-CCT-GAGTG----ACCT-TGGGCCCTG------------GTT------CGG-CAG---TG-------GTGG-AT-TT
gi|108995 : CACATCG-T-TCA-CCT-GAGTG----CCCT-T-GGCCCTG------------GTT------CAG-CTG---TG-------GT-G-AT-
gi|108996 : CACATCG-C-TCA-CCT-GATTG----ACCT-T-GGTCTTGAT----G-----GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108997 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCATG------------GGT------CAG-CAG---TG-------GT-G-AT-TT
gi|108998 : CACATCG-T-TTA-CCT-GAGTG----GCGT-T-TACCCTGTC----GT---TCCT------CAG-CAG---TT-------GTGG-AT-TTT
gi|108999 : CACATTG-C-TCA-CCT-GAGTA----GCCT-T-GGCCCTACC----GT---TGTT------CA
gi|109000 : CACATCG-C-TCA-TCT-AAATA----AC-T-T-GGCCCCGCT----GT---TGTG------CAG-CTG---TT-------GT-GAAT-TTT
gi|109001 : CACACTA-C-TCC-CAT-GAATC----ACCT-T-AGTCCTGCT----GT---TGTT------CAG-CTA---TT-------GT-G-AT-TTTt
gi|109002 : CACATCG-CCTCA-CCT-GAGTG----ACCT-T-GGTCCTG------------GCT------CAGCCAG---TG-------GT-G-AT-TT
gi|109003 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109004 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109005 : CACATCG-C-TCA-CCC-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|109006 : CACATCGGC-TCA-CCT-GAGTG----ACCT-T--GCCCTGGC-----------TC------CAG-CAG---TG-------GT-G-AT-TTT
gi|109007 : CACATAA-C-TCA-CTG-GAGTG----ATTT-T-GGCCCTGCCACTAAT---TGTG------CAG-CAGT--TG-------AT-A-AT-TTT
gi|109008 : CACATCA-C-TCA-TCC-GAGTG-----CCT-T-GGCCGTGTC----GT---T---------CAG-CAG---TG-------GT-T-AT-TTT
gi|109048 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-TGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT----T-TTT
gi|109049 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TTTT------CAG-GAG---TAACTACTTGT-G-AT-TT
gi|109050 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAA---TA-------GT-G-AT-TTT
gi|109051 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GC-G-AT-TT
gi|109052 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCC---------T---TGCT------CAG-CAA---TG-------GT-G-AT-TT
gi|109053 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GC---TGTT------GAG-CTG---TT-------GT-G-AT-TTT
gi|109054 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GTC--TGTT------GAGACTG---TT-------GT-G-AT-TTTt
gi|109055 : ACATCG-C-TCG-CTA-AAGTG----ACCC-A-GGTCCTGTC----GT---TGTT------CAG-CAG---TT-------AT-G-AT-TTTt
gi|109061 : CATTG-C-TCA-TAT-GAGTG----ACCT-T-CGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|109062 : CATTG-C-TCA-CCT-GAGTG----GCCT-T-TGCCCTGCC----AT---TGTT------TAG-TAG---TT-------GT-G-AT-TTt
gi|109063 : CATCG-C-TCA-TCT-GAGTG----GCCT-T-GGCCCTAAC----CT---TGTT------CAG-AAG---TT-------AT-G-AT-ct
gi|109064 : CACCA-C-TCA-TCA-GAGTG----ACCT-T-GGCTTAGCT----GC---TGTT------CAG-CAG---TT-------TT-C-AT-TTTatt
gi|109065 : CATCG-C-GCA-ACT-GAGTG----GCCT-T-GGCTCTGCC----GT---TATT-------AA-CAG---TG-------GT-A-AT-TTTt
gi|109069 : TCA-T-TCA-CCA-GAGAG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-t
gi|109070 : CA-C-TCA-CCT-GAGTG----ATCT-T-GACCCTATC----AT---TGTT------CGG-CAG---TT-------GT-G-AT-
blockSeqs : CCACTAATT AAGTAC A GCA ACTACTT A
blockSeqs : CCATTGTT . C GT TT A
blockSeqs : CCCTTTGT . A T . A
blockSeqs : ATGTCT . . . . A
blockSeqs : ATGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : TCGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CCATT . . . . .
blockSeqs : CCAGT . . . . .
blockSeqs : CCGTC . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CTGCT . . . . .
blockSeqs : CTGTC . . . . .
blockSeqs : TTGCT . . . . .
blockSeqs : CAATT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CCACT . . . . .
blockSeqs : CAATT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : TCATT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CCCTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : TTGTT . . . . .
blockSeqs : CTATT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : TCGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : CTGTT . . . . .
blockSeqs : TCGTT . . . . .
blockSeqs : CCATT . . . . .
blockSeqs : CCATT . . . . .
blockSeqs : ATGCT . . . . .
blockSeqs : TCGTT . . . . .
blockSeqs : CCATT . . . . .
blockSeqs : CCATT . . . . .
blockSeqs : ACCTT . . . . .
blockSeqs : CTGCT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : CCGTT . . . . .
blockSeqs : TCATT . . . . .
blockSeqs : ATG . . . . .
blockSeqs : GC . . . . .
blockSeqs : TT . . . . .
blockSeqs : C . . . . .
blockSeqs : . . . . . .
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blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
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blockSeqCons :
originalCons : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
finalCons : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
Alignments
lowQualScore : 333333333333
lowQualScore : 0 0 0 0 0000 0 0 555555555555 111111 1 111 2222222 0 0 1
lowQualScore : . . . . .... . . ............ ...... . ... ....... . . .
lowQualScore : 4 8 8 8 9999 4 4 444444444444 222222 2 777 0000000 9 4 7
consensus : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
Reference ( family-206 ) : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108922 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-TCT
gi|108923 : CACATCA-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTGAT----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTt
gi|108924 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TATT------CAG-CAG---TG-------GT-G-AT-TTTct
gi|108925 : CACATTG-C-TCA-CTT-AAGTC----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-TTT
gi|108926 : CACATCG-C-TCA-CCT-GAGTA----ACTT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-AT-TTTt
gi|108927 : CACATCG-C-TTA-CCT-GAATG----ACCT-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TG-------GT-G-GT-TTT
gi|108928 : CACATCG-C-TCA-CCT-GAGTG----ACGT-T-GACCCTGCC----GT---TGTT------CAG-TAG---TT-------AT-G-ATATTT
gi|108929 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTATC----GT---TGTT------CAG-CAG---
gi|108930 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TGTT------CAG-CAG---TT-------GT-G-ATATTTatgtg
gi|108931 : CACATCA-C-TTA-CCC-GATTG----ACTG-T-GGCCCTGCT----GT---TG-T------CAG-CAG---TT-------GT-G-ATATTT
gi|108932 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108933 : CACATTA-C-TCA-CCT-GAGTG----GCCT-C-AGCCCTGCC----AT---TGTT------TAC-CAG---TT-------GT-G-AT-CT
gi|108934 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108935 : CATATCA-C-TCA-TCC-GAGTG----ACCT-T-GGCCCTGCC----AG---TATT------CAG-CAG---TG-------GT-T-AT-TTTatt
gi|108936 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108937 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAG---TG-------GT-G-AT-TCT
gi|108938 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTt
gi|108939 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108940 : CACATCA-C-TAA-CCT-GAATG----ACCT-T-AGCACTGCC----GT---CGTT------CAA-CAG---TT-------AT-G-AT-
gi|108941 : CACAACA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108942 : CACATCG-C-TCA-CTT-GAGTG----ACGT-T-GGCCCTGCC----GT---TGTT------CGG-CAG---T
gi|108943 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------AT-G-AT-TTT
gi|108944 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-A-AT-TTT
gi|108945 : CACATTG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108946 : CACATCG-C-TCA-CTT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108947 : CACATCA-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAA---TG-------GT-G-ATATTT
gi|108948 : CACATCG-C-TCA-CCT-GAATG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TTTt
gi|108949 : CACATTG-C-TCA-CCT-GAGTA----ACTT-T-GACCCTACT----GC---TATT------CAG-CAG---AT-------GT-G-AT-TTT
gi|108950 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGGCCTGCT----GT---CATT------CAG-CAT---TG-------GT-C-AT-TTTt
gi|108951 : CACATTG-C-TTA-CCT-GAGTG----ACCT-T-GG-TCTGTT----GC---TGTT------CGG-CAG---TT-------GT-G-AT-TT
gi|108952 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108953 : CACATCG-C-TCA-CCTTGAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108954 : CACATCA-C---A-CTT-GAGTG----ACCT-T-GGCACTGCA----AT---TGTT------CAG-CAG---TG-------GT-G-AT-
gi|108955 : CACATCG-C-ACA-CCC-GAGTG----ACCT-T-GGCCCAGCC----GT---TGTT------TCG-CAG---CG-------AT-G-AT-TTTgtt
gi|108956 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GGT------CAG-CAG---TG-------GC-G-AT-TTt
gi|108957 : CACATCG-C-TTA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-
gi|108958 : CACATCG-C-TCA-CCT-CAGTG----ACCT-T-GGCCCTGCCATT-GT---TGTT------CAC-CAG---T
gi|108959 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAT---TG-------GT-G-AT-TTt
gi|108960 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108961 : CACATCT-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---CG-------GT-G-AT-TT
gi|108962 : CACATCG-T-TCA-CCT-GAGCG----AC-T-T-GACCCTGCC----GT---TGAT------CAG-CAG---CG-------GT-G-AT-TCT
gi|108963 : CACATTG-C-TCA-CTT-GAGTC----ACCT-T-GACCCTTCC----AC---TGTT------CAG-CTG---TT-------GT-G-AT-CTT
gi|108964 : CACATTG-C-TCA-CCT-GAGCA----ACCT-T-GGCCCTGCA----AT---TATT------CAG-CAG---Tt
gi|108965 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------CAGAAAG---TA-------GT-G-AT-TTTt
gi|108966 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108967 : CACATCG-C-TCA-C-T-GAGTG----ACCT-T-GGCCTTG------------GCT------CAG-CAG---TG-------GT-G-AC-TT
gi|108968 : CACATCG-C-TCA-CCT-GAGTGACGTACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108969 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCCTGCT----GT---TCAT------TAG-GAG---AG-------GT-G-AT-TTT
gi|108970 : CACATCA-C-TCA-TCT-GAATG----ATAT-T-TTCCCTGTC----AT---TGTT------CAG-CAG---TT-------GT-G-AT-ATTt
gi|108971 : CACATCG-C-TCA-ACT-GAGTG----ACCT-T-GGCCCTACC----GT---TTTT------CTG-CAG---CA-------GC-G-AT-
gi|108972 : CACATCG-C-TCA-TCT-GAGTG----ACCT-T-GGCCTTG------------GTT------CAG-CAG---TG-------AT-G-AT-TTatt
gi|108973 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TTT
gi|108974 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCCTG------------GCT------CAG-TAG---TG-------GT-G-AT-TT
gi|108975 : CACATCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCCTG------------GAC------CAG-CAG---TG-------GT-G-AT-TTT
gi|108976 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGTCCTG------------GTT------CAT-CAG---TG-------GT-G-AT-TTT
gi|108977 : CACATCA-CCTCA-CCT-GACTG----ACCTGT-GGCCCTG------------GTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|108978 : CACATAG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----GT---TGGTAAGTACCGG-TAG---TG-------TT-G-AT-TTT
gi|108979 : CACATCA-C-TCA-CTT-GAGTC----ACCT-T-GGCCCTGCC----CT---TGTT--------G-AAG---TGTT-----GT-A-AT-
gi|108980 : CACATCG-C-TCA-CCT-GAGTG----ACTT-T-GGCCCTG------------GAT------CAG-CAG---TG-------GT-G-AT-attt
gi|108981 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAGGCATG-------AT-G-AT-TTT
gi|108983 : CACATCA-C-TCA-TCT-GAGAG----ACAT-T-GACACTGCC----GT---TGTT------CAG-CA-------------CT-G-AT-TTT
gi|108985 : CACATTG-C-TCA-CCTAGATTG----ACCT-T-GGCCCT-TT----GT---TGTT------CAA-CAGGT-TT-------GT-G-AT-TTT
gi|108986 : CACATTG-C-TCA-CCT--ATTG----ACCT-T-GGC---GCC----CTTTGTGTT------CAA-CAG---TT-------GT-G-AT-TTT
gi|108987 : CACATCG-T-TCA-CAT-GAGTG----ACAT-T-GGCACTGCT----AT---TATT------CAG-CAG---TG-------GT-G-AT-t
gi|108988 : CACATCG-C-TCA-TCT-GATTG----ACCT-T-GGCCCTGC------------TT------CAG-CAG---AG-------GT-G-AT-TTTgtt
gi|108989 : CACATCG-C-TCA-CCT-GAATG----ACTT-T-GGCCCTG------------GGT------CAG-CGG---TG-------GT-G-AT-TTT
gi|108990 : CACATCG-C-TCA-CTT-GAGTA----ACCT-T-GGCTCTG------------GTT------CAG-TAG---TG-------GT-G-AT-TT
gi|108991 : CACATCG-C-TCA-CCT-GAGTG----ACCT-C-GG-CCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|108992 : CACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|108993 : CACATCA-C-TCA-TCC-GAGAG----GTAT-T-GACCCTGCC----GT---TAAT------CAG-CAG---TG-------GT-G-AT-TT
gi|108994 : CACATCC-C-TCA-CCT-GAGTG----ACCT-TGGGCCCTG------------GTT------CGG-CAG---TG-------GTGG-AT-TT
gi|108995 : CACATCG-T-TCA-CCT-GAGTG----CCCT-T-GGCCCTG------------GTT------CAG-CTG---TG-------GT-G-AT-
gi|108996 : CACATCG-C-TCA-CCT-GATTG----ACCT-T-GGTCTTGAT----G-----GCT------CAG-CAG---TA-------GT-G-AT-TT
gi|108997 : CACATCG-C-TCA-CCT-GAGTG----ACCA-T-GGCCATG------------GGT------CAG-CAG---TG-------GT-G-AT-TT
gi|108998 : CACATCG-T-TTA-CCT-GAGTG----GCGT-T-TACCCTGTC----GT---TCCT------CAG-CAG---TT-------GTGG-AT-TTT
gi|108999 : CACATTG-C-TCA-CCT-GAGTA----GCCT-T-GGCCCTACC----GT---TGTT------CA
gi|109000 : CACATCG-C-TCA-TCT-AAATA----AC-T-T-GGCCCCGCT----GT---TGTG------CAG-CTG---TT-------GT-GAAT-TTT
gi|109001 : CACACTA-C-TCC-CAT-GAATC----ACCT-T-AGTCCTGCT----GT---TGTT------CAG-CTA---TT-------GT-G-AT-TTTt
gi|109002 : CACATCG-CCTCA-CCT-GAGTG----ACCT-T-GGTCCTG------------GCT------CAGCCAG---TG-------GT-G-AT-TT
gi|109003 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109004 : CACATAG-C-TTAACCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GT-G-AT-TT
gi|109005 : CACATCG-C-TCA-CCC-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---T
gi|109006 : CACATCGGC-TCA-CCT-GAGTG----ACCT-T--GCCCTGGC-----------TC------CAG-CAG---TG-------GT-G-AT-TTT
gi|109007 : CACATAA-C-TCA-CTG-GAGTG----ATTT-T-GGCCCTGCCACTAAT---TGTG------CAG-CAGT--TG-------AT-A-AT-TTT
gi|109008 : CACATCA-C-TCA-TCC-GAGTG-----CCT-T-GGCCGTGTC----GT---T---------CAG-CAG---TG-------GT-T-AT-TTT
gi|109048 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-TGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT----T-TTT
gi|109049 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTGCC----AT---TTTT------CAG-GAG---TAACTACTTGT-G-AT-TT
gi|109050 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GTT------TAG-CAA---TA-------GT-G-AT-TTT
gi|109051 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCCTG------------GCT------CAG-CAG---TG-------GC-G-AT-TT
gi|109052 : ACATCG-C-TCA-CCT-GAGTG----ACCT-T-GGCCC---------T---TGCT------CAG-CAA---TG-------GT-G-AT-TT
gi|109053 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GC---TGTT------GAG-CTG---TT-------GT-G-AT-TTT
gi|109054 : ACACCG-C-TCA-CCT-GAGTA----ACCT-T-GGCCATGAT----GTC--TGTT------GAGACTG---TT-------GT-G-AT-TTTt
gi|109055 : ACATCG-C-TCG-CTA-AAGTG----ACCC-A-GGTCCTGTC----GT---TGTT------CAG-CAG---TT-------AT-G-AT-TTTt
gi|109061 : CATTG-C-TCA-TAT-GAGTG----ACCT-T-CGCCCTGCC----AT---TGTT------CAG-CAG---TG-------GT-G-AT-TTT
gi|109062 : CATTG-C-TCA-CCT-GAGTG----GCCT-T-TGCCCTGCC----AT---TGTT------TAG-TAG---TT-------GT-G-AT-TTt
gi|109063 : CATCG-C-TCA-TCT-GAGTG----GCCT-T-GGCCCTAAC----CT---TGTT------CAG-AAG---TT-------AT-G-AT-ct
gi|109064 : CACCA-C-TCA-TCA-GAGTG----ACCT-T-GGCTTAGCT----GC---TGTT------CAG-CAG---TT-------TT-C-AT-TTTatt
gi|109065 : CATCG-C-GCA-ACT-GAGTG----GCCT-T-GGCTCTGCC----GT---TATT-------AA-CAG---TG-------GT-A-AT-TTTt
gi|109069 : TCA-T-TCA-CCA-GAGAG----ACCT-T-GGCCCTGCC----GT---TGTT------CAG-CAG---TT-------GT-G-AT-t
gi|109070 : CA-C-TCA-CCT-GAGTG----ATCT-T-GACCCTATC----AT---TGTT------CGG-CAG---TT-------GT-G-AT-