lowQualScore : 55 0 1 1111 0 2 22 777 0 0 2 77777
lowQualScore : .. . . .... . . .. ... . . . .....
lowQualScore : 99 4 6 7777 4 4 55 666 5 5 6 99999
consensus : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GCG-T-GCGGTCACCGTGCGTTCA----GCGTGCGGT
Reference ( gi|52144 ) : TACAGTCCCTGAAACA-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GTG-T-GCGGTCACCGTGCATTCA----GCGTGCGGT
gi|52110 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GTG-T-GCGGTCACCGTG
gi|52125 : TACAGTCCCTGAAACG-TT-CTAC-TT----CA-CCA-TTTTTCCGTGCG-TTCA-GCG-T-GCGGTCACCGTG
gi|52133 : TACAGTCCCTGAAACG-CT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GCG-T-GTGGTCACCGTG
gi|52124 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GCA-T-GCGGTCACTGTG
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GCG-T-GCGGTCAC
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCC--------------------------GTGCGTTCA----GCGTGCGGTg
gi|52155 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCA-GTCA-GCG-T-GCGGTCACCGTGcacg
gi|52183 : TACAGTCCCTGAAATG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCT-GCG-T-GCGGTCACCGTG
gi|52127 : TACAGTCCCTGAAACG-TT-CTAC-TT----TG-CCA-TTTTTCCGTGCGTTTCA-GCG-T-GCGGGCACCGTG
gi|52096 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-GTCA-CCG-T-GCGTTCACCGTG
gi|52113 : TACAGTCCCTGAAACG-TT-CTTC-TT----TA-CCA-TTTTTCCGTGCG-T--------------TCACCGTGCATTCT----GCGTGCGGT
gi|52128 : TACAGTCCCTGAAACG-TT-CTACTTT----TG-CCA-TTTTTCCGTGCGTTTCA-GCG-T-GCGGGCACCGTG
gi|52179 : TACAATCCCTGAAACG-TT-CTAC-TT----TA-TCA-TTTTTCC-------------G-T-GCAGTCACCGTGCATTCT----GCGTGCGGT
gi|52165 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-GTG-T-G
gi|52143 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-TCA-TTTTTCCGTGC--------------CGGTCACCGTGCGGTCT----GCGCGCGGT
gi|52191 : TACAGTCCCTGAAACA-TT-CTAC-TT----TA-CCA-TTTTTCCATGCG-TTCA----------GTCACCGTG
gi|52187 : TACAGTCCCTGAAACA-TT-CTA---T----TA-CCA-TTTTTCC-------------G-T-GCGGTCACCGTGCGTT-A----ACGTGCGGT
gi|52149 : TACAGTCCCTGAAATG-TT-CTAC-TT----TA-CCA-TCTTTCCGTGCA-TTCA-GCG-T-GCGTTCA
gi|52149 : TACAGTCCCTGAAATG-TT-CTAC-TT----TA-CCA-TCTTTCC--------------------------GTGCATTCA----GCGTGCGtgtgtg
gi|52103 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTCCCGTGCG-TTCA-GCG-T-Gttcatgtgtg
gi|52189 : TACAGTCCCTTAAATT-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-CCA-T-GCGGTTAGCGTGC
gi|52162 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTTA-GCG-T-Gggt
gi|52132 : TACAGTCCCTGAATCA-TT-CTAC-TT----TA-CCA-TTTCCCCGTGCG-CTCA-CCG-T-ACGTTCACCGT
gi|52097 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTTC------------CG-T-GCGGTCACCGTGCGTTC--------TGCGGT
gi|52142 : TACAGTCCCTGAAACG-GT-CTAC-TT----CA-CCA-TTTTT-CGTGCG--TCACGCG-T-GCGGTCACCGg
gi|52172 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-
gi|52106 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCG-CCG-T-G
gi|52105 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-
gi|52193 : TACAGTCCCTGAAATG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-ccgt
gi|52135 : TATAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTACG-TTCA-CCG-T-G
gi|52152 : TACAGCCCCTGAAACG-GT-TTAC-TT----TA-CCA-TTTTCCCGTTCG-CTCA-CCG-T-GCGTTCACCGT
gi|52158 : TACAGTCCCTGAAACG-TT-CTAC-TC----TA-CCA-TTTTTCCGTGCG-GTCA-TCG-T-G
gi|52119 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-GTCA-
gi|52168 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTCCCGTGCG-GTCT-GCG-T-Gccatg
gi|52160 : TACAGTCCCTGAAATG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-GTCA-TCG-T-G
gi|52121 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-GTTA-CCG-T-G
gi|52139 : TACAGTCCCTGAAACG-GT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-GTCA-CCG-T-G
gi|52146 : TACAGTCCCTGAAACG-TT-CTACTTT----TA-CCA-TTTTTCCGTGCG-GTCA-CCG-T-G
gi|52101 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCATTTTTTCCGTGCG-GTCA-CCG-T-G
gi|52098 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCATTTTTTCCGTGCG-GTCA-CCG-T-G
gi|52204 : TACAGTCCCTAAAACG-AT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-TTCA-
gi|52136 : TACAGTCCTTGAAACG-TT-CTAC-TT----TA-CCATTTTTTTCGTGCG-TTCA-TCG-T-Gtcatg
gi|52212 : TACAGTTCCTGAAACG-TT-CTAC-TTTAAATA-CCA--TTTTCCGTGCG-TTCA-GCG-T-G
gi|52153 : TACAGTCCCTGAAACG-TT-CTACTTT----TA-CCA-T------------TTCA-GCG-T-GCGGTCACCGTG
gi|52173 : TACAGTCCCTGAAACG-TT-CTAC-TTTGAATA-CCA-TTTTTCCGTGCG-GTCA-CCG-T-G
gi|52170 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTGTCCATGCG-GTCA-CCG-T-G
gi|52175 : TACAATCCCTGAAACG-TT-CTAC-TT----TA-CAA-TTTTTCCGTGCG-GTCA-CCG-T-G
gi|52131 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCATTTTTTCCATGCG-GTCA-TCG-T-G
gi|52182 : TGCAGTCCCTGAAACG-TT-CCAC-TT----CA-CCA-TTTTTCCGTGCG-GTCA-CCG-T-G
gi|52151 : TACAGTCCCTGAAACG-TT-C-AC-TT----TA-CCA-TTTTTCCGTGCG-GTCA-
gi|52185 : TACAATCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCATGCG-GTCA-ccg
gi|52117 : TACTGTCCCTGAAACG-TT-CTAC-TT----TA-CCATTTTTTCCGTGCG-GTCA-CCG-T-Gccatg
gi|52219 : TACAGTCCCTGAAACG-TT-CTAC-TT----T--CCA--TTTTCCTT----TTCC-GTG-C-G-GGTCACCGTG
gi|52178 : TACAGTCCCTGAAACA-TT-CTAC-TT----TA-CCA-TTTTCTC-TGCA-TTCA-
gi|52218 : TACAGTCCCTGAAACG-GT-CTACTTT----TA-CCA-ATTTTCCGTGCG------------GC--TCACCGTGccatg
gi|52192 : TACAGTCCCTGAAACA-TT-CTAC-TT----TA-CCA-
gi|52186 : TACAGTCCCTGAAACA-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgcacgcagagcgaacggtg
gi|52109 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-CTTcacgcacggtgaccgcacgcagagcgaacggtg
gi|52115 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-gaacggtgagagcacggtgagtgaacggcg
gi|52126 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-catgcacggtgaccacacgctgaacgcacgg
gi|52107 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgactgcacgg
gi|52214 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-catgcacgcagaccgcacgctaaccgcaaacggac
gi|52210 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcatggtgaccgcacgcagaacgaacggtg
gi|52207 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgtaggc
gi|52201 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcatggtgaccgcacgcagagcgaacggt
gi|52174 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-caggcacggtgaccgcacgcagaacgaacggtg
gi|52180 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacacacggtgaccgcacgcagaacgaacggtg
gi|52145 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgcacgcagagcgaacagtg
gi|52118 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgcacgatg
gi|52147 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcatggtgaccgcaaggagaacgcacggtg
gi|52137 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacagtgaccgcacgcagaacgcacggtg
gi|52134 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-aacgcacggtgactgcacgctgtacgcacggtg
gi|52177 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcatggtgactgcacggtgaccacacgg
gi|52167 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccatacgcagagcgaacggtg
gi|52141 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-ccaacagtgaccgccgcgaacgcacggtg
gi|52140 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccacacgcagaacgcacggtg
gi|52150 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgcacgcagaacgcacggtg
gi|52148 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cacgcacggtgaccgcaccgcagaacgcacg
gi|52123 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-catgcacagtgatcgcatggagaacgcacggtg
gi|52209 : TACAGTCCTTGAAAGG-TT-CTAC-TT----CA-CCA-cacgcacggtgaccgcacgctgaatgcacggtg
gi|52197 : TACAGTCCCTGAAACA-TT-TTAC-TT----TA-CCA-catgcacgctgaattcacggtgaccgcacgctg
gi|52205 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCcatgcacggtgaccacacggagaatgcatggtg
gi|52195 : TACAGTCCCTGAAGCG-TT-CTAC-TT----TA-CCA-ATTTgcatgctgaccgctcggagaacgcacggt
gi|52184 : TACAGTCCCTGAAACG-TT-CTAT-TT----TA-CCA-aacgttggatgcacgatgattacacggtg
gi|52138 : TACAGTCCCTGAAACG-TT-CTAC-TT----TA-Ccacgcacggtgaccgcacgcagaacgaacggtg
gi|52164 : TACAGTCCTTGAAACG-TT-CTAC-TT----TA-CCA-agtaccacacgcacggtgatcgcacacagaacgcacggtg
gi|52169 : TACAGTCCCTGAAACG-CT-CTAC-TT----TA-CCcacgcacggtgaccgcacggtgatcgcacgctg
gi|52199 : TACAGTCCCTGAAACG-TT-CTAC-TT----TC-CCA-tcttgaacggtgagcgcacgctgaacgcacg
gi|52176 : TACAGTCCCTGAAACGTTT-CTAC-TT----TA-CCA-cacgcacggtgaccgaacgcagaacgcacggtg
gi|52216 : TACAGTTCCTGAAATG-TT-CTAC-TT----TA-CCA-cacggcacggtgaccgcgacgcagaacgcacggtg
gi|52196 : TACAGTCCCTGAAACGCTT-CTAC-TT----TA-CCcatgcacggtgaccgcacgcagagcaaacggtg
gi|52203 : TACAGTCCCTAACACG-TT-CTAC-TT----TA-CCA-cacacgcacggtcaccgaccgctgaccgcacggtg
gi|52163 : TACAGTCCCTGATACG-TA-CTAC-TT----TA-CCA-cacgcacggtgaacgaacggtgagtgcacgctg
gi|52242 : ACAGCCCCTGAAACG-TT-GTAC-TT----TA-CCA-TTTTCCCATGCG-TTCA-GTG-T-GCAGTCACCGTGcacgcacggtgacctcacgcagagcgaacggtg
gi|52234 : ACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTTTCCGTGCG-ATCA-CTG-T-G
gi|52240 : ACAGTCCCTGAAACG-TT-CTAC-TT----TG-CCA-TTTTTCCGTGCG-TTCA-
gi|52241 : ACAGTCCCTGCCACG-TT-CTAC-TT----TA-CCA-TTTCTCCATGCA-CTCA-CCG-T-GAGTTCACCG
gi|52243 : ACAGTCCCTGAAACG-TTTCTAC-TT----TA-CCATTTTTTCCGTGCG-GTCA-cacg
gi|52239 : ACAGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-cc
gi|52246 : CAGTCCCTGAAACG-TT-CTAC-TT----TACCCA-TTTTTCCGTGCG-TTCA-GCG-T-GCGA-CACTGTGcacgcacggtgaccgcacgctgaacgcacagtg
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTATCCGTGCG-TTCA-GCG-T-GCGTTCAC
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----TA-CCA-TTTATCC--------------------------GTGCGTTCA----GCGTGCG
gi|52192 : CCGTTCG-CTCT-GCG-T-GCGGTCACCGTGCGTttcac
gi|52186 : tacagtccctgaaacattctactttaccacCCGTTCG-CTCT-GCG-T-GCGGTCACCGTGCGTtg
gi|52115 : tacagtccctgaaacattctactttaccacCCGTGCG-TTCA-GCG-T-GTGGTCACCGTGCATtg
gi|52214 : tacagtccctgaaacgttctactttaccacCCGTTCG-TTCT-GCG-T-GCGGTCACCATGCGT
gi|52207 : tacagtccctgaaacgttctactttaccacCCGTTCG-CTCT-GCG-T-GCGGTCACCATGCGTtg
gi|52201 : tacagtccctgaaacgttctactttaccacCCGTTCG-TTCT-GCG-T-GCGGTCACCGTGCt
gi|52174 : tacagtccctgaaacgttctactttaccacagCCGTTCG-TTCT-GCG-T-GCGGTCACCGTGtg
gi|52180 : tacagtccctgaaacgttctactttaccacacaCTGTTCG-CTCT-GCG-T-GCGGTCACCGTGCGTtg
gi|52147 : tacagtccctgaaacgttctactttaccacCCGTGCG-TTCT-GCG-T-GCGGTCACTGTGCGTtg
gi|52137 : tacagtccctgaaacgttctactttaccacCCGTGCG-TACA-GCG-T-GCAGTCACCGTGCGTTtg
gi|52141 : tacagtccctgaaacgttctactttaccaCCGTGCG-TTCT-GCG-T-GTGGTCACCGTGCGTtg
gi|52140 : tacagtccctgaaacgttctactttaccacCCGTGCG-TTCT-GCG-T-GCGGTCACCGTGCGTtg
gi|52148 : tacagtccctgaaacgttctactttaccacCCGTGCG-TTCT-CCA-T-GCGATCACTGTGCATtg
gi|52123 : tacagtccctgaaacgttctactttaccacCCGTGCA-TTCA-GCG-T-GCGGTCACCGTGCGTtg
gi|52197 : tacagtccctgaaacgttctactttaccacCCATGCA-TTCT-CCG-T-GTGGTCACCGTGCATtg
gi|52239 : tacagtccctgaaacattttactttaccacCTGTGCG-TTCA-GCG-T-GCGGTCACCGTGCGTtg
gi|52184 : acagtccctgaaacgttctactttaccacCCGTTCG-TTCT-GCG-T-GCGGTCACCGTGCGTtg
gi|52138 : tacagtccctgaaacgttctattttaccacCCGTGCG-TTCT-GTG-T-GCGATCACCGTGCGTtg
gi|52199 : tacagtccctgaaacgttctactttacagtaccacCCGTGCG-TTCT-GCG-T-TCGGTCACCGTGCGTtg
gi|52176 : tacagtccctgaaacgttctactttcccacCCGTGCG-TTCT-GCG-TCGCGGTCACCGTGC----------CGTGTGGTtg
gi|52216 : tacagtccctgaaacgtttctactttCCGTTTG-CTCT-GCG-T-GCGGTCACCGTGCATtg
gi|52150 : tacagttcctgaaatgttctactttaccacCGTGCG-TTCT-GCGGT-GCGGTCACCGTGCGTtg
gi|52164 : tacagtccctgaaacgttctactttaccacCGTGCG-ATCA-CCG-T-GCGGTCACCGTGCGT
gi|52169 : tacagtccttgaaacgttctactttaccacCGTGCG-TTCA-GCG-T-GCGCTCACCGTTCActg
gi|52209 : tacagtccctgaaacgctctactttacctctCA-GCG-T-GCGGTCACCGTGAATTCA----GCGTGC
gi|52164 : tacagtccttgaaaggttctacttcaccacatCA-GCG-T-GCGATCACCGTGCGGTCA----CCGTGCG
gi|52203 : tacagtccttgaaacgttctactttaccacaCA-GCG-T-GCACTCACCGTTCGTTCA----CCGTGCG
gi|52134 : tacagtccctaacacgttctactttaccacaG-T-GTGGTCACCGTGCAGTCACCATGCGTGTGGT
gi|52147 : tacagtccctgaaacgttctactttCACCGTGCGTTCT----GCGTGCGGTgg
gi|52140 : tacagtccctgaaacgttctactttaccacacgcacagtgCACCGTGCGTTCT----GCGTGCGGT
gi|52123 : tacagtccctgaaacgttctactttaccacacgcacggtgCACCGTGCATTCA----GCGTGCGGT
gi|52239 : tacagtccctgaaacgttctactttaccacacgcacggtgCACTGTGCGTTCA----GCGTGCGGT
Alignments
lowQualScore : 1111111
lowQualScore : 0 0 1 1111 0 0 2 0 0 0 22 5555 0 0 0 2222222
lowQualScore : . . . .... . . . . . . .. .... . . . .......
lowQualScore : 8 4 2 7777 4 4 5 4 4 4 66 0000 4 4 6 1111111
consensus : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCA----GCGCGCGGT
Reference ( family-205 ) : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCA----GCGTGCGGT
gi|52096 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-GCGT-TCACCGTG
gi|52097 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTT-C----------------CG-T-GCGG-TCACCGTGCGTTC--------TGCGGT
gi|52098 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-Gg
gi|52101 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52103 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-TTCA-G--CG-T-G
gi|52105 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CG-T-
gi|52106 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCG-C--CG-T-G
gi|52107 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC-A-CGCA-GACCG-C-ACGC-TAACCG
gi|52109 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-CTTcaaacggac
gi|52110 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGgaacggtgagagcacggtgagtgaacggcg
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCAC
gi|52113 : TACAGTCCCTGAAACG-TT-CTTC-TT----T-A-CCA-TTTTTC-CG-TGC-G-T-----------------TCACCGTGCATTCT----GCGTGCGGTg
gi|52115 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52115 : C-CG-TGC-G-TTCA-G--CG-T-GTGG-TCACCGTGCATcatgcacggtgaccacacgctgaacgcacgg
gi|52117 : tacagtccctgaaacgttctactttaccacTACTGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52118 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52118 : C-CG-TGC-G-TTCT-C--CT-T-GCGG-TCACCATGCGTcacgcatggtgaccgcaaggagaacgcacggtg
gi|52119 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CA-T-Gtg
gi|52121 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTTA-C--CG-T-G
gi|52123 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGA----ATGCACGGT
gi|52124 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CA-T-GCGG-TCACTGTGg
gi|52125 : TACAGTCCCTGAAACG-TT-CTAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTG
gi|52126 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52127 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTGcacgcacggtgactgcacgg
gi|52128 : TACAGTCCCTGAAACG-TT-CTACTTT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTG
gi|52131 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CA-TGC-G-GTCA-T--CG-T-G
gi|52132 : TACAGTCCCTGAATCA-TT-CTAC-TT----T-A-CCA-TTTCCC-CG-TGC-G-CTCA-C--CG-T-ACGT-TCACCGT
gi|52133 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GTGG-TCACCGTG
gi|52134 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52134 : --CG-T-GTGG-TCACCGTGCAGTCACCATGCGTGTGGTcacgcatggtgactgcacggtgaccacacgg
gi|52135 : tacagtccctgaaacgttctactttTATAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TAC-G-TTCA-C--CG-T-Gg
gi|52136 : TACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTT-CG-TGC-G-TTCA-T--CG-T-G
gi|52137 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52137 : C-CG-TGC-G-TACA-G--CG-T-GCAG-TCACCGTGCGTTaacgcacggtgactgcacgctgtacgcacggtg
gi|52138 : tacagtccctgaaacgttctactttaccaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-Ctg
gi|52138 : C-CG-TGC-G-TTCT-G--TG-T-GCGA-TCACCGTGCGTagtaccacacgcacggtgatcgcacacagaacgcacggtg
gi|52139 : tacagtccctgaaacgttctactttacagtaccacTACAGTCCCTGAAACG-GT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52140 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52140 : C-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagaacgcacggtg
gi|52141 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52141 : C-CG-TGC-G-TTCT-G--CG-T-GTGG-TCACCGTGCGTcacgcacggtgaccacacgcagaacgcacggtg
gi|52142 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-GT-CTAC-TT----C-A-CCA-TTTTT--CG-TGC-G--TCACG--CG-T-GCGG-TCACCGtg
gi|52143 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-----------------CGG-TCACCGTGCGGTCT----GCGCGCGGT
gi|52144 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGCATTCA----GCGTGCGGT
gi|52145 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52145 : CA-T--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgatg
gi|52146 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTACTTT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52147 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52147 : C-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACTGTGCGTcacgcacagtgaccgcacgcagaacgcacggtg
gi|52148 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52148 : C-CG-TGC-G-TTCT-C--CA-T-GCGA-TCACTGTGCATcatgcacagtgatcgcatggagaacgcacggtg
gi|52149 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TCTTTC-CG-TGC-A-TTCA-G--CG-T-GCGT-TCA-TGTGTGtg
gi|52150 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52150 : -CG-TGC-G-TTCT-G--CGGT-GCGG-TCACCGTGCGTcacgcacggtgaccgcaccgcagaacgcacg
gi|52151 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-C-AC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-
gi|52152 : TACAGCCCCTGAAACG-GT-TTAC-TT----T-A-CCA-TTTTCC-CG-TTC-G-CTCA-C--CG-T-GCGT-TCACCGT
gi|52153 : TACAGTCCCTGAAACG-TT-CTAC-TT----TTA-CCA-TTT---------------CA-G--CG-T-GCGG-TCACCGTG
gi|52155 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-A-GTCA-G--CG-T-GCGG-TCACCGTG
gi|52158 : TACAGTCCCTGAAACG-TT-CTAC-TC----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52160 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52162 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTTA-G--CG-T-G
gi|52163 : TACAGTCCCTGATACG-TA-CTAC-TT----T-A-CCA-
gi|52163 : C-CG-TTC-G-CTCT-G--CG-T-GAGG-TCACCGTGCGTcacgcacggtgacctcacgcagagcgaacggtg
gi|52164 : tacagtccctgatacgtactactttaccacTACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCA------CACG-CAC-G-GTGA-C--CG-C-ACGG-TGATCGCACGCTtg
gi|52165 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-Gg
gi|52167 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52168 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-GTCT-G--CG-T-Gccaacagtgaccgccgcgaacgcacggtg
gi|52169 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CC
gi|52169 : -CG-TGC-G-TTCA-G--CG-T-GCGC-TCACCGTtcttgaacggtgagcgcacgctgaacgcacg
gi|52170 : tacagtccctgaaacgctctactttacctcttgaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTGTC-CA-TGC-G-GTCA-C--CG-T-G
gi|52172 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-
gi|52173 : TACAGTCCCTGAAACG-TT-CTAC-TTTGAAT-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52174 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52174 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGTGTcacacacggtgaccgcacgcagaacgaacggtg
gi|52175 : tacagtccctgaaacgttctactttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CAA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52176 : TACAGTCCCTGAAACGTTT-CTAC-TT----T-A-CCA-
gi|52176 : C-CG-TGC-G-TTCT-G--CG-TCGCGG-TCACCGTGC----------CGTGTGGTcacggcacggtgaccgcgacgcagaacgcacggtg
gi|52177 : tacagtccctgaaacgtttctactttTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52177 : C-CG-TTC-G-CTCT-G--CG-T-ATGG-TCACCGTGCGTcacgcacggtgaccatacgcagagcgaacggtg
gi|52178 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTCT-C--TGC-A-TTCA-C--CA-T-Gtg
gi|52179 : TACAATCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-A-----------------G-TCACCGTGCATTCT----GCGTGCGGT
gi|52180 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52180 : C-TG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacagtg
gi|52182 : tacagtccctgaaacgttctactttaccacTGCAGTCCCTGAAACG-TT-CCAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52183 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACCGTG
gi|52184 : TACAGTCCCTGAAACG-TT-CTAT-TT----T-A-CCA-
gi|52184 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagaacgaacggtg
gi|52185 : tacagtccctgaaacgttctattttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-GTCA-C--CA-T-Gtg
gi|52186 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-
gi|52186 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacggtg
gi|52187 : tacagtccctgaaacattctactttaccacTACAGTCCCTGAAACA-TT-CTA---T----T-A-CCA-TTTTTC-CG-TG------------------CGG-TCACCGTGCGTT-A----ACGTGCGGTtg
gi|52189 : TACAGTCCCTTAAATT-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CA-T-GCGG-TTAGCGTGCG
gi|52191 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-TTCA------------G-TCACCGTGgt
gi|52192 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-
gi|52192 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacggtg
gi|52193 : tacagtccctgaaacattctactttaccacTACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-tg
gi|52195 : TACAGTCCCTGAAGCG-TT-CTAC-TT----T-A-CCA-ATTT
gi|52196 : TACAGTCCCTGAAACGCTT-CTAC-TT----T-A-CC--------------------CACA--CG-C-ACGG-TCACCGACCGCTGA----CCGCACGGTaacgttggatgcacgatgattacacggtg
gi|52197 : TACAGTCCCTGAAACA-TT-TTAC-TT----T-A-CCA-g
gi|52197 : C-CA-TGC-A-TTCT-C--CG-T-GTGG-TCACCGTGCATcatgcacggtgaccacacggagaatgcatggtg
gi|52199 : tacagtccctgaaacattttactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-C-CCA-tg
gi|52199 : C-CG-TGC-G-TTCT-G--CG-T-TCGG-TCACCGTGCGTcacgcacggtgaccgaacgcagaacgcacggtg
gi|52201 : tacagtccctgaaacgttctactttcccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52201 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCcaggcacggtgaccgcacgcagaacgaacggtg
gi|52203 : tacagtccctgaaacgttctactttaccacagTACAGTCCCTAACACG-TT-CTAC-TT----T-A-CCA-tg
gi|52203 : CA-G--CG-T-GCAC-TCACCGTTCGTTCA----CCGTGCGcacgcacggtgaacgaacggtgagtgcacgctg
gi|52204 : tacagtccctaacacgttctactttaccacaTACAGTCCCTAAAACG-AT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-T--CA-T-G
gi|52205 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CC
gi|52207 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-gcatgctgaccgctcggagaacgcacggt
gi|52207 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagagcgaacggt
gi|52209 : tacagtccctgaaacgttctactttaccacTACAGTCCTTGAAAGG-TT-CTAC-TT----C-A-CCA-CATGCA-CGCTGA-A-TTCA----------CGG-TGACCGCACGCTt
gi|52209 : CA-G--CG-T-GCGG-TCACCGTGAATTCA----GCGTGCg
gi|52210 : tacagtccttgaaaggttctacttcaccacatTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52212 : TACAGTTCCTGAAACG-TT-CTAC-TTTAAAT-A-CCA--TTTTC-CG-TGC-G-TTCA-G--CG-T-Gcacgcacggtgaccgtaggc
gi|52214 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52214 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagaacgaacggtg
gi|52216 : tacagtccctgaaacgttctactttaccacTACAGTTCCTGAAATG-TT-CTAC-TT----T-A-CCA-tg
gi|52216 : C-CG-TTT-G-CTCT-G--CG-T-GCGG-TCACCGTGCATcatgcacggtgaccgcacgcagagcaaacggtg
gi|52218 : tacagttcctgaaatgttctactttaccacTACAGTCCCTGAAACG-GT-CTACTTT----T-A-CCA-ATTTTC-CG-TGCGG-CTCA-C--CG-T-Gtg
gi|52219 : TACAGTCCCTGAAACG-TT-CTAC-TT----T---CCA-TTTT-C-CT-T-----TTC-----CG-T-GCGGGTCACCGTG
gi|52234 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-ATCA-C--TG-T-G
gi|52239 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGA----ACGCACAGT
gi|52240 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52241 : ACAGTCCCTGCCACG-TT-CTAC-TT----T-A-CCA-TTTCTC-CA-TGC-A-CTCA-C--CG-T-GAGT-TCACCGCACG
gi|52242 : ACAGCCCCTGAAACG-TT-GTAC-TT----T-A-CCA-TTTTCC-CA-TGC-G-TTCA-G--TG-T-GCAG-TCACCGTG
gi|52243 : ACAGTCCCTGAAACG-TTTCTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-
gi|52246 : CAGTCCCTGAAACG-TT-CTAC-TT----T-ACCCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGA--CACTGTGcc
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTATC-CG-TGC-G-TTCA-G--CG-T-GCGT-TCAC
Alignments
lowQualScore : 11
lowQualScore : 0 0 1 1111 0 0 2 0 0 0 33 8888 0 0 0 1 66 00
lowQualScore : . . . .... . . . . . . .. .... . . . . .. ..
lowQualScore : 8 4 2 7777 4 4 5 4 4 4 77 0000 4 4 7 3 55 33
consensus : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
Reference ( family-205 ) : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
gi|52096 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-GCGT-TCACCGTG
gi|52097 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTT-C----------------CG-T-GCGG-TCACCGTGCGTTCTG--CG
gi|52098 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-Ggtg
gi|52101 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52103 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-TTCA-G--CG-T-G
gi|52105 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CG-T-
gi|52106 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCG-C--CG-T-G
gi|52107 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC-A-CGCA-GACCG-C-ACGC-TAACCG
gi|52109 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-CTTcaaacggac
gi|52110 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGgaacggtgagagcacggtgagtgaacggcg
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCAC
gi|52113 : TACAGTCCCTGAAACG-TT-CTTC-TT----T-A-CCA-TTTTTC-CG-TGC-G-T-----------------TCACCGTGCATTCTG--CGTG--CGGTg
gi|52115 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC----------------ACGG-TGACCACACGCTGAA--CGCA--CGG
gi|52117 : TACTGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52118 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52118 : C-CG-TGC-G-TTCT-C--CT-T-GCGG-TCACCATGCGTcacgcatggtgaccgcaaggagaacgcacggtg
gi|52119 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CA-T-Gtg
gi|52121 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTTA-C--CG-T-G
gi|52123 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--TGCA--CGGT
gi|52124 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CA-T-GCGG-TCACTGTGg
gi|52125 : TACAGTCCCTGAAACG-TT-CTAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTG
gi|52126 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52127 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTGcacgcacggtgactgcacgg
gi|52128 : TACAGTCCCTGAAACG-TT-CTACTTT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTG
gi|52131 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CA-TGC-G-GTCA-T--CG-T-G
gi|52132 : TACAGTCCCTGAATCA-TT-CTAC-TT----T-A-CCA-TTTCCC-CG-TGC-G-CTCA-C--CG-T-ACGT-TCACCGT
gi|52133 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GTGG-TCACCGTG
gi|52134 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52135 : TATAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TAC-G-TTCA-C--CG-T-Gcacgcatggtgactgcacggtgaccacacgg
gi|52136 : TACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTT-CG-TGC-G-TTCA-T--CG-T-G
gi|52137 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52137 : C-CG-TGC-G-TACA-G--CG-T-GCAG-TCACCGTGCGTTaacgcacggtgactgcacgctgtacgcacggtg
gi|52138 : tacagtccctgaaacgttctactttaccaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-Ctg
gi|52138 : C-CG-TGC-G-TTCT-G--TG-T-GCGA-TCACCGTGCGTagtaccacacgcacggtgatcgcacacagaacgcacggtg
gi|52139 : tacagtccctgaaacgttctactttacagtaccacTACAGTCCCTGAAACG-GT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52140 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAGAACGCA--CGGT
gi|52141 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52141 : C-CG-TGC-G-TTCT-G--CG-T-GTGG-TCACCGTGCGTcacgcacggtgaccacacgcagaacgcacggtg
gi|52142 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-GT-CTAC-TT----C-A-CCA-TTTTT--CG-TGC-G--TCACG--CG-T-GCGG-TCACCGtg
gi|52143 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-----------------CGG-TCACCGTGCGGTCTG--CGCG--CGGT
gi|52144 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGCATTCAG--CGTG--CGGT
gi|52145 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52145 : CA-T--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgatg
gi|52146 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTACTTT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52147 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52147 : C-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACTGTGCGTcacgcacagtgaccgcacgcagaacgcacggtg
gi|52148 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52148 : C-CG-TGC-G-TTCT-C--CA-T-GCGA-TCACTGTGCATcatgcacagtgatcgcatggagaacgcacggtg
gi|52149 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TCTTTC-CG-TGC-A-TTCA-G--CG-T-GCGT-TCA-TGTGTGtg
gi|52150 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52150 : -CG-TGC-G-TTCT-G--CGGT-GCGG-TCACCGTGCGTcacgcacggtgaccgcaccgcagaacgcacg
gi|52151 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-C-AC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-
gi|52152 : TACAGCCCCTGAAACG-GT-TTAC-TT----T-A-CCA-TTTTCC-CG-TTC-G-CTCA-C--CG-T-GCGT-TCACCGT
gi|52153 : TACAGTCCCTGAAACG-TT-CTAC-TT----TTA-CCA-TTT---------------CA-G--CG-T-GCGG-TCACCGTG
gi|52155 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-A-GTCA-G--CG-T-GCGG-TCACCGTG
gi|52158 : TACAGTCCCTGAAACG-TT-CTAC-TC----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52160 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52162 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTTA-G--CG-T-G
gi|52163 : TACAGTCCCTGATACG-TA-CTAC-TT----T-A-CCA-
gi|52163 : C-CG-TTC-G-CTCT-G--CG-T-GAGG-TCACCGTGCGTcacgcacggtgacctcacgcagagcgaacggtg
gi|52164 : tacagtccctgatacgtactactttaccacTACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCA------CACG-CAC-G-GTGA-C--CG-C-ACGG-TGATCGCACGCTtg
gi|52165 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-Gg
gi|52167 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52168 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-GTCT-G--CG-T-Gccaacagtgaccgccgcgaacgcacggtg
gi|52169 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CC
gi|52169 : -CG-TGC-G-TTCA-G--CG-T-GCGC-TCACCGTtcttgaacggtgagcgcacgctgaacgcacg
gi|52170 : tacagtccctgaaacgctctactttacctcttgaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTGTC-CA-TGC-G-GTCA-C--CG-T-G
gi|52172 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-
gi|52173 : TACAGTCCCTGAAACG-TT-CTAC-TTTGAAT-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52174 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52174 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGTGTcacacacggtgaccgcacgcagaacgaacggtg
gi|52175 : tacagtccctgaaacgttctactttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CAA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52176 : TACAGTCCCTGAAACGTTT-CTAC-TT----T-A-CCA-
gi|52176 : C-CG-TGC-G-TTCT-G--CG-TCGCGG-TCACCGTGCcacggcacggtgaccgcgacgcagaacgcacggtg
gi|52177 : tacagtccctgaaacgtttctactttaccacacgTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCATACG--CAG--AGCGAACGGTtg
gi|52178 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTCT-C--TGC-A-TTCA-C--CA-T-Gg
gi|52179 : TACAATCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-A-----------------G-TCACCGTGCATTCTG--CGTG--CGGT
gi|52180 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52180 : C-TG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacagtg
gi|52182 : tacagtccctgaaacgttctactttaccacTGCAGTCCCTGAAACG-TT-CCAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52183 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACCGTG
gi|52184 : TACAGTCCCTGAAACG-TT-CTAT-TT----T-A-CCA-
gi|52184 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagaacgaacggtg
gi|52185 : tacagtccctgaaacgttctattttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-GTCA-C--CA-T-Gtg
gi|52186 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52187 : TACAGTCCCTGAAACA-TT-CTA---T----T-A-CCA-TTTTTC-CG-TG------------------CGG-TCACCGTGCGTT-AA--CGTG--CGGTg
gi|52189 : TACAGTCCCTTAAATT-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CA-T-GCGG-TTAGCGTGCG
gi|52191 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-TTCA------------G-TCACCGTGgt
gi|52192 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52193 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52195 : TACAGTCCCTGAAGCG-TT-CTAC-TT----T-A-CCA-ATTT
gi|52196 : TACAGTCCCTGAAACGCTT-CTAC-TT----T-A-CC--------------------CACA--CG-C-ACGG-TCACCGACCGCTGAC--CGCA--CGGTaacgttggatgcacgatgattacacggtg
gi|52197 : TACAGTCCCTGAAACA-TT-TTAC-TT----T-A-CCA-g
gi|52197 : C-CA-TGC-A-TTCT-C--CG-T-GTGG-TCACCGTGCATcatgcacggtgaccacacggagaatgcatggtg
gi|52199 : tacagtccctgaaacattttactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-C-CCA-------------------CA----CG-C-ACGG-TGACCGAACG--CAGAACGCA--CGGTtg
gi|52201 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52201 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCcaggcacggtgaccgcacgcagaacgaacggtg
gi|52203 : tacagtccctgaaacgttctactttaccacagTACAGTCCCTAACACG-TT-CTAC-TT----T-A-CCA-tg
gi|52203 : CA-G--CG-T-GCAC-TCACCGTTCGTTCAC--CGTG--CGcacgcacggtgaacgaacggtgagtgcacgctg
gi|52204 : tacagtccctaacacgttctactttaccacaTACAGTCCCTAAAACG-AT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-T--CA-T-G
gi|52205 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CC
gi|52207 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-gcatgctgaccgctcggagaacgcacggt
gi|52207 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagagcgaacggt
gi|52209 : tacagtccctgaaacgttctactttaccacTACAGTCCTTGAAAGG-TT-CTAC-TT----C-A-CCA-CATGCA-CGCTGA-A-TTCA----------CGG-TGACCGCACGCTt
gi|52209 : CA-G--CG-T-GCGG-TCACCGTGAATTCAG--CGTG--g
gi|52210 : tacagtccttgaaaggttctacttcaccacatTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52212 : TACAGTTCCTGAAACG-TT-CTAC-TTTAAAT-A-CCA--TTTTC-CG-TGC-G-TTCA-G--CG-T-Gcacgcacggtgaccgtaggc
gi|52214 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52214 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagaacgaacggtg
gi|52216 : tacagtccctgaaacgttctactttaccacTACAGTTCCTGAAATG-TT-CTAC-TT----T-A-CCA-tg
gi|52216 : C-CG-TTT-G-CTCT-G--CG-T-GCGG-TCACCGTGCATcatgcacggtgaccgcacgcagagcaaacggtg
gi|52218 : tacagttcctgaaatgttctactttaccacTACAGTCCCTGAAACG-GT-CTACTTT----T-A-CCA-ATTTTC-CG-TGCGG-CTCA-C--CG-T-Gtg
gi|52219 : TACAGTCCCTGAAACG-TT-CTAC-TT----T---CCA-TTTT-C-CT-T-----TTC-----CG-T-GCGGGTCACCGTG
gi|52234 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-ATCA-C--TG-T-G
gi|52239 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--CGCA--CAGT
gi|52240 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52241 : ACAGTCCCTGCCACG-TT-CTAC-TT----T-A-CCA-TTTCTC-CA-TGC-A-CTCA-C--CG-T-GAGT-TCACCGCACG
gi|52242 : ACAGCCCCTGAAACG-TT-GTAC-TT----T-A-CCA-TTTTCC-CA-TGC-G-TTCA-G--TG-T-GCAG-TCACCGTG
gi|52243 : ACAGTCCCTGAAACG-TTTCTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-
gi|52246 : CAGTCCCTGAAACG-TT-CTAC-TT----T-ACCCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGA--CACTGTGcc
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTATC-CG-TGC-G-TTCA-G--CG-T-GCGT-TCAC
Alignments
lowQualScore : 11
lowQualScore : 0 0 1 1111 0 0 2 0 0 0 33 8888 0 0 0 1 66 00
lowQualScore : . . . .... . . . . . . .. .... . . . . .. ..
lowQualScore : 8 4 2 7777 4 4 5 4 4 4 77 0000 4 4 7 3 55 33
consensus : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
Reference ( family-205 ) : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
gi|52096 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-GCGT-TCACCGTG
gi|52097 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTT-C----------------CG-T-GCGG-TCACCGTGCGTTCTG--CG
gi|52098 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-Ggtg
gi|52101 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52103 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-TTCA-G--CG-T-G
gi|52105 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CG-T-
gi|52106 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCG-C--CG-T-G
gi|52107 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC-A-CGCA-GACCG-C-ACGC-TAACCG
gi|52109 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-CTTcaaacggac
gi|52110 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGgaacggtgagagcacggtgagtgaacggcg
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCAC
gi|52113 : TACAGTCCCTGAAACG-TT-CTTC-TT----T-A-CCA-TTTTTC-CG-TGC-G-T-----------------TCACCGTGCATTCTG--CGTG--CGGTg
gi|52115 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC----------------ACGG-TGACCACACGCTGAA--CGCA--CGG
gi|52117 : TACTGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52118 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52118 : C-CG-TGC-G-TTCT-C--CT-T-GCGG-TCACCATGCGTcacgcatggtgaccgcaaggagaacgcacggtg
gi|52119 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CA-T-Gtg
gi|52121 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTTA-C--CG-T-G
gi|52123 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--TGCA--CGGT
gi|52124 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CA-T-GCGG-TCACTGTGg
gi|52125 : TACAGTCCCTGAAACG-TT-CTAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTG
gi|52126 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52127 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTGcacgcacggtgactgcacgg
gi|52128 : TACAGTCCCTGAAACG-TT-CTACTTT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTG
gi|52131 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CA-TGC-G-GTCA-T--CG-T-G
gi|52132 : TACAGTCCCTGAATCA-TT-CTAC-TT----T-A-CCA-TTTCCC-CG-TGC-G-CTCA-C--CG-T-ACGT-TCACCGT
gi|52133 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GTGG-TCACCGTG
gi|52134 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52135 : TATAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TAC-G-TTCA-C--CG-T-Gcacgcatggtgactgcacggtgaccacacgg
gi|52136 : TACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTT-CG-TGC-G-TTCA-T--CG-T-G
gi|52137 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52137 : C-CG-TGC-G-TACA-G--CG-T-GCAG-TCACCGTGCGTTaacgcacggtgactgcacgctgtacgcacggtg
gi|52138 : tacagtccctgaaacgttctactttaccaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-Ctg
gi|52138 : C-CG-TGC-G-TTCT-G--TG-T-GCGA-TCACCGTGCGTagtaccacacgcacggtgatcgcacacagaacgcacggtg
gi|52139 : tacagtccctgaaacgttctactttacagtaccacTACAGTCCCTGAAACG-GT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52140 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAGAACGCA--CGGT
gi|52141 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52141 : C-CG-TGC-G-TTCT-G--CG-T-GTGG-TCACCGTGCGTcacgcacggtgaccacacgcagaacgcacggtg
gi|52142 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-GT-CTAC-TT----C-A-CCA-TTTTT--CG-TGC-G--TCACG--CG-T-GCGG-TCACCGtg
gi|52143 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-----------------CGG-TCACCGTGCGGTCTG--CGCG--CGGT
gi|52144 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGCATTCAG--CGTG--CGGT
gi|52145 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52145 : CA-T--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgatg
gi|52146 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTACTTT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52147 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52147 : C-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACTGTGCGTcacgcacagtgaccgcacgcagaacgcacggtg
gi|52148 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52148 : C-CG-TGC-G-TTCT-C--CA-T-GCGA-TCACTGTGCATcatgcacagtgatcgcatggagaacgcacggtg
gi|52149 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TCTTTC-CG-TGC-A-TTCA-G--CG-T-GCGT-TCA-TGTGTGtg
gi|52150 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52150 : -CG-TGC-G-TTCT-G--CGGT-GCGG-TCACCGTGCGTcacgcacggtgaccgcaccgcagaacgcacg
gi|52151 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-C-AC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-
gi|52152 : TACAGCCCCTGAAACG-GT-TTAC-TT----T-A-CCA-TTTTCC-CG-TTC-G-CTCA-C--CG-T-GCGT-TCACCGT
gi|52153 : TACAGTCCCTGAAACG-TT-CTAC-TT----TTA-CCA-TTT---------------CA-G--CG-T-GCGG-TCACCGTG
gi|52155 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-A-GTCA-G--CG-T-GCGG-TCACCGTG
gi|52158 : TACAGTCCCTGAAACG-TT-CTAC-TC----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52160 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52162 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTTA-G--CG-T-G
gi|52163 : TACAGTCCCTGATACG-TA-CTAC-TT----T-A-CCA-
gi|52163 : C-CG-TTC-G-CTCT-G--CG-T-GAGG-TCACCGTGCGTcacgcacggtgacctcacgcagagcgaacggtg
gi|52164 : tacagtccctgatacgtactactttaccacTACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCA------CACG-CAC-G-GTGA-C--CG-C-ACGG-TGATCGCACGCTtg
gi|52165 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-Gg
gi|52167 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52168 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-GTCT-G--CG-T-Gccaacagtgaccgccgcgaacgcacggtg
gi|52169 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CC
gi|52169 : -CG-TGC-G-TTCA-G--CG-T-GCGC-TCACCGTtcttgaacggtgagcgcacgctgaacgcacg
gi|52170 : tacagtccctgaaacgctctactttacctcttgaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTGTC-CA-TGC-G-GTCA-C--CG-T-G
gi|52172 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-
gi|52173 : TACAGTCCCTGAAACG-TT-CTAC-TTTGAAT-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52174 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52174 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGTGTcacacacggtgaccgcacgcagaacgaacggtg
gi|52175 : tacagtccctgaaacgttctactttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CAA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52176 : TACAGTCCCTGAAACGTTT-CTAC-TT----T-A-CCA-
gi|52176 : C-CG-TGC-G-TTCT-G--CG-TCGCGG-TCACCGTGCcacggcacggtgaccgcgacgcagaacgcacggtg
gi|52177 : tacagtccctgaaacgtttctactttaccacacgTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCATACG--CAG--AGCGAACGGTtg
gi|52178 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTCT-C--TGC-A-TTCA-C--CA-T-Gg
gi|52179 : TACAATCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-A-----------------G-TCACCGTGCATTCTG--CGTG--CGGT
gi|52180 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52180 : C-TG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacagtg
gi|52182 : tacagtccctgaaacgttctactttaccacTGCAGTCCCTGAAACG-TT-CCAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52183 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACCGTG
gi|52184 : TACAGTCCCTGAAACG-TT-CTAT-TT----T-A-CCA-
gi|52184 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagaacgaacggtg
gi|52185 : tacagtccctgaaacgttctattttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-GTCA-C--CA-T-Gtg
gi|52186 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52187 : TACAGTCCCTGAAACA-TT-CTA---T----T-A-CCA-TTTTTC-CG-TG------------------CGG-TCACCGTGCGTT-AA--CGTG--CGGTg
gi|52189 : TACAGTCCCTTAAATT-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CA-T-GCGG-TTAGCGTGCG
gi|52191 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-TTCA------------G-TCACCGTGgt
gi|52192 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52193 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52195 : TACAGTCCCTGAAGCG-TT-CTAC-TT----T-A-CCA-ATTT
gi|52196 : TACAGTCCCTGAAACGCTT-CTAC-TT----T-A-CC--------------------CACA--CG-C-ACGG-TCACCGACCGCTGAC--CGCA--CGGTaacgttggatgcacgatgattacacggtg
gi|52197 : TACAGTCCCTGAAACA-TT-TTAC-TT----T-A-CCA-g
gi|52197 : C-CA-TGC-A-TTCT-C--CG-T-GTGG-TCACCGTGCATcatgcacggtgaccacacggagaatgcatggtg
gi|52199 : tacagtccctgaaacattttactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-C-CCA-------------------CA----CG-C-ACGG-TGACCGAACG--CAGAACGCA--CGGTtg
gi|52201 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52201 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCcaggcacggtgaccgcacgcagaacgaacggtg
gi|52203 : tacagtccctgaaacgttctactttaccacagTACAGTCCCTAACACG-TT-CTAC-TT----T-A-CCA-tg
gi|52203 : CA-G--CG-T-GCAC-TCACCGTTCGTTCAC--CGTG--CGcacgcacggtgaacgaacggtgagtgcacgctg
gi|52204 : tacagtccctaacacgttctactttaccacaTACAGTCCCTAAAACG-AT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-T--CA-T-G
gi|52205 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CC
gi|52207 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-gcatgctgaccgctcggagaacgcacggt
gi|52207 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagagcgaacggt
gi|52209 : tacagtccctgaaacgttctactttaccacTACAGTCCTTGAAAGG-TT-CTAC-TT----C-A-CCA-CATGCA-CGCTGA-A-TTCA----------CGG-TGACCGCACGCTt
gi|52209 : CA-G--CG-T-GCGG-TCACCGTGAATTCAG--CGTG--g
gi|52210 : tacagtccttgaaaggttctacttcaccacatTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52212 : TACAGTTCCTGAAACG-TT-CTAC-TTTAAAT-A-CCA--TTTTC-CG-TGC-G-TTCA-G--CG-T-Gcacgcacggtgaccgtaggc
gi|52214 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52214 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagaacgaacggtg
gi|52216 : tacagtccctgaaacgttctactttaccacTACAGTTCCTGAAATG-TT-CTAC-TT----T-A-CCA-tg
gi|52216 : C-CG-TTT-G-CTCT-G--CG-T-GCGG-TCACCGTGCATcatgcacggtgaccgcacgcagagcaaacggtg
gi|52218 : tacagttcctgaaatgttctactttaccacTACAGTCCCTGAAACG-GT-CTACTTT----T-A-CCA-ATTTTC-CG-TGCGG-CTCA-C--CG-T-Gtg
gi|52219 : TACAGTCCCTGAAACG-TT-CTAC-TT----T---CCA-TTTT-C-CT-T-----TTC-----CG-T-GCGGGTCACCGTG
gi|52234 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-ATCA-C--TG-T-G
gi|52239 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--CGCA--CAGT
gi|52240 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52241 : ACAGTCCCTGCCACG-TT-CTAC-TT----T-A-CCA-TTTCTC-CA-TGC-A-CTCA-C--CG-T-GAGT-TCACCGCACG
gi|52242 : ACAGCCCCTGAAACG-TT-GTAC-TT----T-A-CCA-TTTTCC-CA-TGC-G-TTCA-G--TG-T-GCAG-TCACCGTG
gi|52243 : ACAGTCCCTGAAACG-TTTCTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-
gi|52246 : CAGTCCCTGAAACG-TT-CTAC-TT----T-ACCCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGA--CACTGTGcc
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTATC-CG-TGC-G-TTCA-G--CG-T-GCGT-TCAC
blockSeqs : T TGAA T TT GAC T AA AA
blockSeqs : T TAAA T TT CG C AA AA
blockSeqs : T . T G CA T . AA
blockSeqs : . . T G C C . .
blockSeqs : . . T T C T . .
blockSeqs : . . T T G T . .
blockSeqs : . . . T C T . .
blockSeqs : . . . C C G . .
blockSeqs : . . . T G T . .
blockSeqs : . . . T G T . .
blockSeqs : . . . T C T . .
blockSeqs : . . . G C T . .
blockSeqs : . . . T C T . .
blockSeqs : . . . G C T . .
blockSeqs : . . . G G C . .
blockSeqs : . . . T G T .
blockSeqs : . . . T G T
blockSeqs : . . . G G T
blockSeqs : . . . C T T
blockSeqs : . . . T C T
blockSeqs : . . . T G C
blockSeqs : . . . T C T
blockSeqs : . . . T T T
blockSeqs : . . . T G T
blockSeqs : . . . G G C
blockSeqs : . . . T C T
blockSeqs : . . . T G T
blockSeqs : . . . G G T
blockSeqs : . . . T T C
blockSeqs : . . . T C .
blockSeqs : . . . T G .
blockSeqs : . . . T C .
blockSeqs : . . . G G .
blockSeqs : . . . C G .
blockSeqs : . . . G C
blockSeqs : . . . G C
blockSeqs : . . . G G
blockSeqs : . . . T G
blockSeqs : . . . C T
blockSeqs : . . . G T
blockSeqs : . . . T G
blockSeqs : . . . G G
blockSeqs : . . . T C
blockSeqs : . . . G G
blockSeqs : . . . T G
blockSeqs : . . . G G
blockSeqs : . . . T C
blockSeqs : . . . G C
blockSeqs : . . . T G
blockSeqs : . . . T C
blockSeqs : . . . C G
blockSeqs : . . . G C
blockSeqs : . . . T G
blockSeqs : . . . T C
blockSeqs : . . . G G
blockSeqs : . . . T G
blockSeqs : . . . T C
blockSeqs : . . . T C
blockSeqs : . . . T C
blockSeqs : . . . T G
blockSeqs : . . . T G
blockSeqs : . . . C T
blockSeqs : . . . T G
blockSeqs : . . . T G
blockSeqs : . . . T G
blockSeqs : . . . C G
blockSeqs : . . . C G
blockSeqs : . . . T C
blockSeqs : . . . A C
blockSeqs : . . . T C
blockSeqs : . . . C G
blockSeqs : . . . T G
blockSeqs : . . . G G
blockSeqs : . . . T .
blockSeqs : . . . T .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
finalCons : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
Alignments
lowQualScore : 11
lowQualScore : 0 0 1 1111 0 0 2 0 0 0 33 8888 0 0 0 1 66 00
lowQualScore : . . . .... . . . . . . .. .... . . . . .. ..
lowQualScore : 8 4 2 7777 4 4 5 4 4 4 77 0000 4 4 7 3 55 33
consensus : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
Reference ( family-205 ) : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTGCGTTCAG--CGCG--CGGT
gi|52096 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-GCGT-TCACCGTG
gi|52097 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTT-C----------------CG-T-GCGG-TCACCGTGCGTTCTG--CG
gi|52098 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-Ggtg
gi|52101 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52103 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-TTCA-G--CG-T-G
gi|52105 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CG-T-
gi|52106 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCG-C--CG-T-G
gi|52107 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC-A-CGCA-GACCG-C-ACGC-TAACCG
gi|52109 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-CTTcaaacggac
gi|52110 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGgaacggtgagagcacggtgagtgaacggcg
gi|52112 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCAC
gi|52113 : TACAGTCCCTGAAACG-TT-CTTC-TT----T-A-CCA-TTTTTC-CG-TGC-G-T-----------------TCACCGTGCATTCTG--CGTG--CGGTg
gi|52115 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA--------CA-TGC----------------ACGG-TGACCACACGCTGAA--CGCA--CGG
gi|52117 : TACTGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52118 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52118 : C-CG-TGC-G-TTCT-C--CT-T-GCGG-TCACCATGCGTcacgcatggtgaccgcaaggagaacgcacggtg
gi|52119 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CA-T-Gtg
gi|52121 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTTA-C--CG-T-G
gi|52123 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--TGCA--CGGT
gi|52124 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CA-T-GCGG-TCACTGTGg
gi|52125 : TACAGTCCCTGAAACG-TT-CTAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGG-TCACCGTG
gi|52126 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52127 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTGcacgcacggtgactgcacgg
gi|52128 : TACAGTCCCTGAAACG-TT-CTACTTT----T-G-CCA-TTTTTC-CG-TGC-GTTTCA-G--CG-T-GCGG-GCACCGTG
gi|52131 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTC-CA-TGC-G-GTCA-T--CG-T-G
gi|52132 : TACAGTCCCTGAATCA-TT-CTAC-TT----T-A-CCA-TTTCCC-CG-TGC-G-CTCA-C--CG-T-ACGT-TCACCGT
gi|52133 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GTGG-TCACCGTG
gi|52134 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52135 : TATAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TAC-G-TTCA-C--CG-T-Gcacgcatggtgactgcacggtgaccacacgg
gi|52136 : TACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCATTTTTTT-CG-TGC-G-TTCA-T--CG-T-G
gi|52137 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52137 : C-CG-TGC-G-TACA-G--CG-T-GCAG-TCACCGTGCGTTaacgcacggtgactgcacgctgtacgcacggtg
gi|52138 : tacagtccctgaaacgttctactttaccaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-Ctg
gi|52138 : C-CG-TGC-G-TTCT-G--TG-T-GCGA-TCACCGTGCGTagtaccacacgcacggtgatcgcacacagaacgcacggtg
gi|52139 : tacagtccctgaaacgttctactttacagtaccacTACAGTCCCTGAAACG-GT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52140 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAGAACGCA--CGGT
gi|52141 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52141 : C-CG-TGC-G-TTCT-G--CG-T-GTGG-TCACCGTGCGTcacgcacggtgaccacacgcagaacgcacggtg
gi|52142 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-GT-CTAC-TT----C-A-CCA-TTTTT--CG-TGC-G--TCACG--CG-T-GCGG-TCACCGtg
gi|52143 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-----------------CGG-TCACCGTGCGGTCTG--CGCG--CGGT
gi|52144 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-GCGG-TCACCGTGCATTCAG--CGTG--CGGT
gi|52145 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52145 : CA-T--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgatg
gi|52146 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTACTTT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52147 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52147 : C-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACTGTGCGTcacgcacagtgaccgcacgcagaacgcacggtg
gi|52148 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-tg
gi|52148 : C-CG-TGC-G-TTCT-C--CA-T-GCGA-TCACTGTGCATcatgcacagtgatcgcatggagaacgcacggtg
gi|52149 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TCTTTC-CG-TGC-A-TTCA-G--CG-T-GCGT-TCA-TGTGTGtg
gi|52150 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52150 : -CG-TGC-G-TTCT-G--CGGT-GCGG-TCACCGTGCGTcacgcacggtgaccgcaccgcagaacgcacg
gi|52151 : tacagtccctgaaacgttctactttaccacTACAGTCCCTGAAACG-TT-C-AC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-
gi|52152 : TACAGCCCCTGAAACG-GT-TTAC-TT----T-A-CCA-TTTTCC-CG-TTC-G-CTCA-C--CG-T-GCGT-TCACCGT
gi|52153 : TACAGTCCCTGAAACG-TT-CTAC-TT----TTA-CCA-TTT---------------CA-G--CG-T-GCGG-TCACCGTG
gi|52155 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-A-GTCA-G--CG-T-GCGG-TCACCGTG
gi|52158 : TACAGTCCCTGAAACG-TT-CTAC-TC----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52160 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-GTCA-T--CG-T-G
gi|52162 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTTA-G--CG-T-G
gi|52163 : TACAGTCCCTGATACG-TA-CTAC-TT----T-A-CCA-
gi|52163 : C-CG-TTC-G-CTCT-G--CG-T-GAGG-TCACCGTGCGTcacgcacggtgacctcacgcagagcgaacggtg
gi|52164 : tacagtccctgatacgtactactttaccacTACAGTCCTTGAAACG-TT-CTAC-TT----T-A-CCA------CACG-CAC-G-GTGA-C--CG-C-ACGG-TGATCGCACGCTtg
gi|52165 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-G--TG-T-Gg
gi|52167 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52168 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTCC-CG-TGC-G-GTCT-G--CG-T-Gccaacagtgaccgccgcgaacgcacggtg
gi|52169 : TACAGTCCCTGAAACG-CT-CTAC-TT----T-A-CC
gi|52169 : -CG-TGC-G-TTCA-G--CG-T-GCGC-TCACCGTtcttgaacggtgagcgcacgctgaacgcacg
gi|52170 : tacagtccctgaaacgctctactttacctcttgaTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTGTC-CA-TGC-G-GTCA-C--CG-T-G
gi|52172 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-
gi|52173 : TACAGTCCCTGAAACG-TT-CTAC-TTTGAAT-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-G
gi|52174 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52174 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGTGTcacacacggtgaccgcacgcagaacgaacggtg
gi|52175 : tacagtccctgaaacgttctactttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CAA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52176 : TACAGTCCCTGAAACGTTT-CTAC-TT----T-A-CCA-
gi|52176 : C-CG-TGC-G-TTCT-G--CG-TCGCGG-TCACCGTGCcacggcacggtgaccgcgacgcagaacgcacggtg
gi|52177 : tacagtccctgaaacgtttctactttaccacacgTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCATACG--CAG--AGCGAACGGTtg
gi|52178 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTCT-C--TGC-A-TTCA-C--CA-T-Gg
gi|52179 : TACAATCCCTGAAACG-TT-CTAC-TT----T-A-TCA-TTTTTC-CG-TGC-A-----------------G-TCACCGTGCATTCTG--CGTG--CGGT
gi|52180 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52180 : C-TG-TTC-G-CTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagagcgaacagtg
gi|52182 : tacagtccctgaaacgttctactttaccacTGCAGTCCCTGAAACG-TT-CCAC-TT----C-A-CCA-TTTTTC-CG-TGC-G-GTCA-C--CG-T-Gtg
gi|52183 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCT-G--CG-T-GCGG-TCACCGTG
gi|52184 : TACAGTCCCTGAAACG-TT-CTAT-TT----T-A-CCA-
gi|52184 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCGTcacgcacggtgaccgcacgcagaacgaacggtg
gi|52185 : tacagtccctgaaacgttctattttaccacTACAATCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-GTCA-C--CA-T-Gtg
gi|52186 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52187 : TACAGTCCCTGAAACA-TT-CTA---T----T-A-CCA-TTTTTC-CG-TG------------------CGG-TCACCGTGCGTT-AA--CGTG--CGGTg
gi|52189 : TACAGTCCCTTAAATT-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-C--CA-T-GCGG-TTAGCGTGCG
gi|52191 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-TTTTTC-CA-TGC-G-TTCA------------G-TCACCGTGgt
gi|52192 : TACAGTCCCTGAAACA-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACG--CAG--AGCGAACGGT
gi|52193 : TACAGTCCCTGAAATG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52195 : TACAGTCCCTGAAGCG-TT-CTAC-TT----T-A-CCA-ATTT
gi|52196 : TACAGTCCCTGAAACGCTT-CTAC-TT----T-A-CC--------------------CACA--CG-C-ACGG-TCACCGACCGCTGAC--CGCA--CGGTaacgttggatgcacgatgattacacggtg
gi|52197 : TACAGTCCCTGAAACA-TT-TTAC-TT----T-A-CCA-g
gi|52197 : C-CA-TGC-A-TTCT-C--CG-T-GTGG-TCACCGTGCATcatgcacggtgaccacacggagaatgcatggtg
gi|52199 : tacagtccctgaaacattttactttaccacTACAGTCCCTGAAACG-TT-CTAC-TT----T-C-CCA-------------------CA----CG-C-ACGG-TGACCGAACG--CAGAACGCA--CGGTtg
gi|52201 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-g
gi|52201 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCGTGCcaggcacggtgaccgcacgcagaacgaacggtg
gi|52203 : tacagtccctgaaacgttctactttaccacagTACAGTCCCTAACACG-TT-CTAC-TT----T-A-CCA-tg
gi|52203 : CA-G--CG-T-GCAC-TCACCGTTCGTTCAC--CGTG--CGcacgcacggtgaacgaacggtgagtgcacgctg
gi|52204 : tacagtccctaacacgttctactttaccacaTACAGTCCCTAAAACG-AT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-TTCA-T--CA-T-G
gi|52205 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CC
gi|52207 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-gcatgctgaccgctcggagaacgcacggt
gi|52207 : C-CG-TTC-G-CTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagagcgaacggt
gi|52209 : tacagtccctgaaacgttctactttaccacTACAGTCCTTGAAAGG-TT-CTAC-TT----C-A-CCA-CATGCA-CGCTGA-A-TTCA----------CGG-TGACCGCACGCTt
gi|52209 : CA-G--CG-T-GCGG-TCACCGTGAATTCAG--CGTG--g
gi|52210 : tacagtccttgaaaggttctacttcaccacatTACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52212 : TACAGTTCCTGAAACG-TT-CTAC-TTTAAAT-A-CCA--TTTTC-CG-TGC-G-TTCA-G--CG-T-Gcacgcacggtgaccgtaggc
gi|52214 : TACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-
gi|52214 : C-CG-TTC-G-TTCT-G--CG-T-GCGG-TCACCATGCGTcacgcatggtgaccgcacgcagaacgaacggtg
gi|52216 : tacagtccctgaaacgttctactttaccacTACAGTTCCTGAAATG-TT-CTAC-TT----T-A-CCA-tg
gi|52216 : C-CG-TTT-G-CTCT-G--CG-T-GCGG-TCACCGTGCATcatgcacggtgaccgcacgcagagcaaacggtg
gi|52218 : tacagttcctgaaatgttctactttaccacTACAGTCCCTGAAACG-GT-CTACTTT----T-A-CCA-ATTTTC-CG-TGCGG-CTCA-C--CG-T-Gtg
gi|52219 : TACAGTCCCTGAAACG-TT-CTAC-TT----T---CCA-TTTT-C-CT-T-----TTC-----CG-T-GCGGGTCACCGTG
gi|52234 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTTTC-CG-TGC-G-ATCA-C--TG-T-G
gi|52239 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-------------------CA----CG-C-ACGG-TGACCGCACGCTGAA--CGCA--CAGT
gi|52240 : ACAGTCCCTGAAACG-TT-CTAC-TT----T-G-CCA-TTTTTC-CG-TGC-G-TTCA-g
gi|52241 : ACAGTCCCTGCCACG-TT-CTAC-TT----T-A-CCA-TTTCTC-CA-TGC-A-CTCA-C--CG-T-GAGT-TCACCGCACG
gi|52242 : ACAGCCCCTGAAACG-TT-GTAC-TT----T-A-CCA-TTTTCC-CA-TGC-G-TTCA-G--TG-T-GCAG-TCACCGTG
gi|52243 : ACAGTCCCTGAAACG-TTTCTAC-TT----T-A-CCATTTTTTC-CG-TGC-G-GTCA-
gi|52246 : CAGTCCCTGAAACG-TT-CTAC-TT----T-ACCCA-TTTTTC-CG-TGC-G-TTCA-G--CG-T-GCGA--CACTGTGcc
gi|52247 : AGTCCCTGAAACG-TT-CTAC-TT----T-A-CCA-TTTATC-CG-TGC-G-TTCA-G--CG-T-GCGT-TCAC