lowQualScore : 11111111111111111
lowQualScore : 1 222 1 1 666666666666 111 1 11 1 33333333 111 1111 1111 11111 1 22222222 11 333 111111111111 111 1111 1111111 00000000000000000 22 1111111 11111 2222222222222 1 11 11 111 11 222
lowQualScore : 0 111 0 0 2 5 8 444444444444 3 666 6 6 6 6 0 99 1 88888888 000 9999 5 5 77 5 5 4444 55555 0 8 0 8 0 66666666 5 44 5 555 66 777777777777 888 1 0 555 5555 1 5 22 0 4 8888888 66 77 44444444444444444 66 33 5 5 888 4444444 66 2 7777 4 3 66 8888 2 4 4 00000 55 4 8888888888888 4 7 66 2 777 0 99 44 4 4 00 222 4 66 4 7777 99 3 777 999 6
lowQualScore : . ... . . . . . ............ . ... . . . . . .. . ........ ... .... . . .. . . .... ..... . . . . . ........ . .. . ... .. ............ ... . . ... .... . . .. . . ....... .. .. ................. .. .. . . ... ....... .. . .... . . .. .... . . . ..... .. . ............. . . .. . ... . .. .. . . .. ... . .. . .... .. . ... ... .
lowQualScore : 2 888 8 6 8 0 2 000000000000 2 888 7 5 7 7 8 88 8 11111111 000 9999 7 7 99 7 7 7777 88888 6 4 8 0 8 00000000 7 00 0 000 99 444444444444 999 4 4 666 6666 4 0 11 8 4 6666666 99 33 66666666666666666 99 11 0 0 888 4444444 11 7 0000 4 0 99 9999 5 0 0 00000 55 0 9999999999999 4 8 11 9 111 8 99 66 4 4 66 222 4 11 4 0000 44 2 555 000 0
consensus : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AAA-TA---ATTAATTTCTTAAAAC-CAACA-TTTT-GCA-GCAATA-TAAATCAAAAA-TNT-AA---AT--A-T-GTA-AAA--TTCG-CA-TTTTTT-AGAAATTAAAAA-TCAAATTAAAG-AAAAAG-AAATNACTAATATTT-TCTCATGT-AT-CCAAACTTTGATT--AA----A-AAAT--CTTT-GAAACCAACATTTT----GCCG-CATATAAAAATC-AAAA-TCTA--AAAA--AAATATTACTAC----------TATTT-ATA--CAATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TT---CATAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAAAA--CATAACTGGCTGTGTGT-TTG-T-TT-T--AAA---AG-TT--AGGT-G-T--TCAGGGAAC-ACATCCNNNTATATTAAAAG
Reference ( gi|3 ) : CAAGATAGTAATATATCATGTGTCGAAACTTCAATTCAAAAGTA---ATTAATTTCTTAAAAC-CAACA-TTAT-GCA-GCAATA-AAAAACAACAA-CA--AA---AT--G-T-GTA-AAA--TTTG-CA-TTTTTTAAGAAATTAAAAA-TCAGATTAAAGAAAAAAG-AAATAGCTAATATTT-TCTCATGC-AT-CCAAACT---ATT--AA----A-AAAT--CTTT-GAAACCAACATTTT----GCCG-CATATAAAAATC-AAAA-TCTA--AAAA--AAATATTACTACAAA---ATGTTATTT-ATA--CATTGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AAATAACT--TT---TATAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAACA--CATAACTGGTGGTGTGT-TTG-T-TT-T--AAA---AG-TT--AGGT-G-T--TCAGGGAA--ACATCCCCCTGTATCAAAAGT
gi|1 : CAAGATAG--ATATATCATGTGTCGAAACTTCAATTTCAAAGTA---ATTAATTT-TTAAA---CAACA-TTTT-GCACGCAATATAAACACAACAA-C---AA---AT--G-T-GTA-A-----TTG-CATTTTTTTTAGAAATTAAAAA-TCAGATTAAAG--AAAAG-AAATAA-TATGATTT-TCTAATGCAAT-CCAAACT----TT--AA----ACAAAT--CTT---GAACC-ACATTTT----GCCG-C-TATAAAAATC--AAA-TC----AAAA--AAAT-TTACTACAAATGTATGTTAT--------CA-TGTT-TTAT-AAAGGTAA---AAACA-------CAG--GT-AATATTCGC----CAGGTGAAAATAAC---TT---TATAATGTAAGACTAGTAATTCTAT--TG-CTA-------------T-AAAAA--C--AACTGGTGGTGTGT-GT--T-TT-T--AAA---AGTTT--AGGTGG-T--TC--GGGA--ACAT
gi|8 : taatgtcaaacactgattttaatggctgattctgacacctaattttatagataaaggagtaatgtttgtttaagagaacaatagataattggttataagtctatttgaaaagtgatctacatgtacctgtggcttgaacactagctaataccagtaatattattaggtacatttgtCAAGAGAGTA-CGTATCA-GTATC-AAACTTGAATT-------A---ATTAATTTCTTAAA-C-CAACA-TTTTTGCA-GCAATA-TAAATCAAAAA-TTT-AA---ATTTA-T-GTA-AAA--TTTG-CA-TTTTTTAAG-AAT-----------ATGAAAG-AAAAAG-AAATTACT-ATATTT-TCTCATGT-AT-CCAAACTTTGATT--AA----A-AA----CCTT-GAAA--AACCTTTT----GCCGACATAAAATAACC-AAAA-
gi|7 : agtCAAGAGAGTACTAT--CA-GTATCCAAACTTGAAT--------A---ATTAATTTCTAAAAAC-CAACATTTTT-GCA-GCAA-A-TAAATCAA-----A--AATTTAT--A-T-GTA-AAAATTTTG-CA-TTT---------TTAAGAA-T---ATGAAAAGAAAAAG-AAATTACTCATATTTCTCTCATGT-ATCCCAAACTTTGATT--AA----A-A-----CCTT-GAAAACTACA-TTT----GCCG-CACATAAAAA---AATA-ACCA--AAAA--AAaaatttat
gi|10 : CAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT-------A---ATTAATTTTTTAAAAC-CACCA-TTTT-GCA-GCAATA-TAAATCAAAAATTT--AA---AT--T-T-GTA-AAA--TTTG-CA-TTTTTTttctatatatt
gi|13 : tCAAGAGAG-AACGTATCCTGTAACCAACCTTTAATTCAAAAATATTGTTTAATTTCTTAAAATGTAAAA-TT-T-GCA-
gi|16 : ttagtAACA-TTAT-GCA-GCAATA-TGAATCAAAAA-TTT-AA---AT--T-T-GTA-AAA--TTTT-CG-TTTTTT-AGAAATTAAttttttttaaattaaaa
gi|2 : CAA-CATTAA---AT--A-TTGTACAAA--TTCGATA-TTTTTTGA---ATTAAAAA-TCAAAATTAAGAAAAAAG-AA-----TAAG-------TCATGT-AC-C--AACT---ATT--AA----A----T--CTT---AAACCAA----------------ATATAA---TT-AAAA-------AAAA--AAAT----CTAC----------TATTTAATA--CA-AGTTATTAT-AAAGGTAAATCAAACAGTAAAACCAG--GCTAATATTTGCATA-CAG--G-GAATAACT--TTCAATGTAGTAA-GGACTA-TC-----A---TG-CTAG------------T-AAAAA--CA------ATGCTGTGTGTTG-TCTT-T--AAAAATAA-TT--A-GT-G-T--TCAGGGAA--
gi|4 : atggctgatctccctgacacctaacttttatagatcaaacagagtaatgtttgtttaagagaataatgactaatatggttatactctatagtctgaaacagtgatctagcctgtgtctacctgtgtgtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgA--AA---AT--AAT-GTA-AAG--ATCG--A-TTTTTCAAGAAATTAAAAAATCAAATTAAAGCAA---GCAAATAACTA---TTT-TTTCATGTGAT-CCAA-CT---ATT--AACAAAA-AAAT--CTTT-----CCAA------------------ACAAAA--T-AATA-ACTT--AAAA--CAATATTACTAT------------TTT-ATAAGCAT-GTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTTGC--AACAGGTG-AGATAACT--TT---CATGGTTT-AGACTA-TA-----AT--TG-CTA-------------T-AAA-A--CATAA-TGGCTGTGTG--TTG-T-TT-TTAAAA---AA-TT--AGGT-GTT--TTACGGGA--ACAcac
gi|5 : tcgagttaacagttattattcaaaaaatatttttcttaatatgtTATTT-TCTCATGT-AT-CCAAATTTTGATTTAAA----A-AAATAATCTT-GAAACTAACATTTTAATTGCCG-CATATATATATA-AAGA-T-TA--GAAATTGAA-GTCACAAAAAA---AAATTA----ATA--TAATGTT-TTATAAAAGATAA---AAAT--------CAG--GTAAATATTCGC--A-CAGGTG-ACATAACT--TT---CATAGTTT-AGACTA-TA-----AT--TG-CTG-------------TAAAAAA--CATAACTGGCTGTGTGT-TGT-T-TT-T--AAA---AG-TT--GGGT-G-T--TCAGGGAAC-ACATCcac
gi|6 : ATTT-TCTCATGT-AT-ACAAACC---ATT--AA----A-AAAT--CTT--GAATTCAACATTTTT---GCTG-CATATAAAAATC-AAAA-TCTAGAAAAA--AAATATTACTAC------------TTT-ATA--CGATGTT-TTGG-TAAGGTAA---AAACA-------CAG--GTAAATATTCCC--A-CAGGTG-AAATAACT--TT----------------TA-TA-----AT--TG-CTA-------------T-TAAAA--CATAACTGGCTGCGTG--TTG-A-TT-T--AAA---AG-AT--AAGT-T-T--TCAGGAAAT-ACA-CCACATATATgt
gi|10 : TCATGT-AT-CCAAACTTGAATT--AA----T-TAAT--TTTTTAAAACCACCATTTT----GCAG-CA-ATATAAATCAAAAA-TTTA--AAgt
gi|9 : tcaagagagtacgtaTATAAATC-AAAACTCTA--AAAA--A--CATTATT---------------TT-ATA--CAAAGTT-TTAT-AAAAGTTA---AAACA-------CAG--GTAAATATTTGC--A-CAGGTG-ACATAACT--TT---TATAGTAT-AGGCTA-GA-----AT--TG-CTG-------------T-AAA-A--TATAAATGGCTGTATG--TTG-T-TT-TA-AAA---AG-TT--AGGC-G-T--TCAGGGAAC-ACAtttgtaaaatttgcatttttt
gi|14 : aagat--AAATATTACTAT------------TTT-ATA--CAATGTT-TTAT-ATACGTAA---AG-CA-------CAG--GTAAATATTTGC--A-CAGGTA-AGATAACT--TT---CATAGTAC-AGACTA-TA-----AT--TG-
gi|17 : A--CAATGTT-TTAT-AAAGGTAA---AAAAA-------AAAATGTAAATATGAGC--A-CAGGTG-AGA
gi|2 : ACA-------CAG--GTAGA------C--A-CAGGCT-AGATCACTGTTT---CAGACTAT-AGAGTA-TA-----ACCATA-TTAGTCATTATTCTCTT-AAACAAACATTACTC------TGT-TTGAT-CTAT--AAA---AG-TT--AGGT-G----TCAGGGAG--A
gi|15 : atggctgaT---TATGGTAT-AGACCA-TA-----AT---G-CTG-------------T-AAAAA--CATAACTGGTTGTATA--TTA-T-TT-T--AAAC--AG-TT--GGAT-G-T--TTGAGGAA--gtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgcaacattaaatattgtacaaattcgatattttttgaattaaaaatcaaaattaagaaaaaagaataagtcatgtaccaactattaaatcttaaaccaaatataattaaaaaaaaaaatctactatttaatacaagttattataaaggtaaatcaaacagtaaaaccaggctaatatttgcatacagggaataactttcaatgtagtaaggactatcatgctagtaaaaacaatgctgtgtgttgtctttaaaaataattagtgttcagggaacac
gi|12 : T---TATATTCT-AGACTA-TA-----AG--TGTCTA-------------T-ATTGA--TATAATTACTGG-GTGG-TTG-T-TT-T--AAA---AA-TTAAAGGT-G-TTCTCAGGAAACCACATACCGCT---TTAAAAGcacgccat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GAGTATGTTTTTTAAGAGAACAATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111 444444444444 11 11 111 1 11111111 1 1111 11111111111 2222222222222 11111111 4444444444444 1111111 2222222222222 2 111 1
lowQualScore : 777 3 7 6 333333333333 3 0 66 55 00 11 5 444 66 1 5 5 66 2 5 66 1 11111111 3 6 6 3 2 8888 5 0 5 7777 66 77777 2 55 1 0 22222222222 5 0 4444444444444 0 77777777 3 9999999999999 4 55 55 4 4 777 3333333 55 1 4 55 4 4 66 4 666 1 3 3 99999 55 3 6666666666666 77 55 0 0 0 4 4 99 111 4 55 4 4 55 4 4 3 333 2
lowQualScore : ... . . . ............ . . .. .. .. .. . ... .. . . . .. . . .. . ........ . . . . . .... . . . .... .. ..... . .. . . ........... . . ............. . ........ . ............. . .. .. . . ... ....... .. . . .. . . .. . ... . . . ..... .. . ............. .. .. . . . . . .. ... . .. . . .. . . . ... .
lowQualScore : 888 7 3 7 444444444444 4 1 44 00 66 00 0 000 99 2 0 0 99 0 0 99 4 88888888 2 7 7 3 5 1111 0 0 0 8888 99 11111 8 88 4 4 22222222222 0 1 4444444444444 8 22222222 2 4444444444444 4 55 55 0 0 000 0000000 55 4 0 55 0 8 11 9 444 5 6 6 11111 00 6 0000000000000 44 55 8 7 5 1 0 55 000 0 55 0 0 55 0 4 2 000 3
consensus : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AAAGTA---ATTAATTTCTTAAAAC-CAACA--TTTTGCA--GCAATATAAAT-CAAAAATTTAAA--TAT-GTA-AAA--TTTG-CATTTT--TTA-GAAATTAAAAA-TCAGA-TTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TTA-TA--C--AATGTT-TTAT-AAAGGTAAA---AACA-------CAG--GTAAATATTCGC-A--CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTGT-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
Reference ( family-934 ) : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT---AAATA---ATTAATTTCTTAAAAC-CAACA--TTTTGCA--GCAATATAAAT-CAAAAATNTAAA--TAT-GTA-AAA--TTCG-CATTTT--TTA-GAAATTAAAAA-TCAAA-TTAAAGAAAAA-G-AAATNACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CTTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TTA-TA--C--AATGTT-TTAT-AAAGGTAAA---AACA-------CAG--GTAAATATTCGC-A--CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTGTTTGT-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCNNNTATATTAAAAG
gi|1 : CAAGATAG--ATATATCATGTGTCGAAACTTCAATTTCAAAGTA---ATTAATTT-TTAAA---CAACA--TTTTGCAC-GCAATATAAACACAACAAC--AAA--TGT-GTA-A-----TTG-CATTTTTTTTA-GAAATTAAAAA-TCAGA-TTAAAG-AAAA-G-AAATAA-TATGATTT-TCTAATGCAAT-CCAAACT-TTA-----AACAAAT--CTT--GAACC-ACA-TTTT----GCCG-C-TATA-------------AAAATC-AAA-TC-----AAAAAAAT-TTACTACAAATG--T--ATGTTA-T---C---ATGTT-TTAT-AAAGGTAAA---AACA-------CAG--GT-AATATTCGC----CAGGTGAAAATAACT--TT-A---TAATGTAAGACTAGTAATTCTAT--TG-CTA-------------T-AAA--AAC--AACTGGTGGTGTGTGT-T-TTT--AAA---AGTTT--AGGTGG-T--TC--GGGAA-CA
gi|10 : taatgtcaaacactgattttaatggctgattctgacacctaattttatagataaaggagtaatgtttgtttaagagaacaatagataattggttataagtctatttgaaaagtgatctacatgtacctgtggcttgaacactagctaataccagtaatattattaggtacatttgtCAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT---AA-------TTAATTTTTTAAAAC-CACCA--TTTTGCA--GCAATATAAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTG-CATTTT--TTt
gi|12 : tTTA---TATTCT-AGACTA-TA-----AG--TGTCTA-------------T-ATT--GATATAATTA-CTGGGTGGTTGT-TTT--AAA---AA-TTAAAGGT-G-TTCTCA-GGAAACCACATACCGCT---TTAAAAG
gi|13 : CAAGAGAG-AACGTATCCTGTAACCAACCTTTAATTCAAAAATATTGTTTAATTTCTTAAAATGTAAAA---TTTGCA--
gi|14 : ttagtAAATATTACTAT-------T-----TTA-TA--C--AATGTT-TTAT-ATACGTAAA---G-CA-------CAG--GTAAATATTTGC-A--CAGGTA-AGATAACT--TTCA---TAGTAC-AGACTA-TA-----AT--TG-ttttttttaaattaaaa
gi|15 : TTA---TGGTAT-AGACCA-TA-----AT---G-CTG-------------T-AAA--AACATAACTGGTTGTATA-TTAT-TTT--AAAC--AG-TT--GGAT-G-T--TTG-AGGAA-CAC
gi|16 : AACA--TTATGCA--GCAATATGAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTT-CGTTTT--TTA-GAAATTAAgccat
gi|17 : A--C--AATGTT-TTAT-AAAGGTAAA---AAAA-------AAAATGTAAATATGAGC-A--CAGGTG-AGA
gi|2 : TACTAC-------TTCAT-GTA-TA--TTAGATGCT-TCA------GCGGA---CACA-------CAG--GTAGA------C-A--CAGGCT-AGATCACTGTTTCA---GACTAT-AGAGTA-TA-----ACCATA-TTAGTCATTATTCTCTT-AAACAAACATTACT--CTGTTTGATC---TAT--AAA---AG-TT--AGGT-G----TCA-GGGA
gi|2 : atggctgatcAAATTGAGCT---AAAAA---ATTTAGTTATTCAAAC-AAATAAATTTTTTAACGCAACAT-------------TAAA--TATTGTACAAA--TTCGATATTTT--TTG---AATTAAAAA-TCAAAATTAAGAAAAAA-G-AA-----TAAG-------TCATGT-AC-C--AACT----ATT--AAA---T--CTT--AAACCAA-----------------ATATA-------------A---TTAAAA--------AAAAAAAT----CTAC-------T--AT-TTAATA--C--AA-GTTATTAT-AAAGGTAAATCAAACAGTAAAACCAG--GCTAATATTTGC-ATACAGG-G-A-ATAACT--TTCAATGTAGTAA-GGACTA-TC-----A---TG-CTAG------------T-AAA--AAC--AAT--GCTGTGTG-TTGTCTTT--AAAAATAA-TT--A-GT-G-T--TCA-GGGAA-CACggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgcaacattaaatattgtacaaattcgatattttttgaattaaaaatcaaaattaagaaaaaagaataagtcatgtaccaactattaaatcttaaaccaaatataattaaaaaaaaaaatctactatttaatacaagttattataaaggtaaatcaaacagtaaaaccaggctaatatttgcatacagggaataactttcaatgtagtaaggactatcatgctagtaaaaacaatgctgtgtgttgtctttaaaaataattagtgttcagggaacac
gi|3 : atggctgatctccctgacacctaacttttatagatcaaacagagtaatgtttgtttaagagaataatgactaatatggttatactctatagtctgaaacagtgatctagcctgtgtctacctgtgtgtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgatCAAGATAGTAATATATCATGTGTCGAAACTTCAATTCAAAAGTA---ATTAATTTCTTAAAAC-CAACA--TTATGCA--GCAATAAAAAA-CAACAACA-AAA--TGT-GTA-AAA--TTTG-CATTTT--TTAAGAAATTAAAAA-TCAGA-TTAAAGAAAAAAG-AAATAGCTAATATTT-TCTCATGC-AT-CCAAACT----ATT--AAAAAAT--CTTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTACAAAATGTT--AT-TTA-TA--C--ATTGTT-TTAT-AAAGGTAAA---AACA-------CAG--GTAAATATTCGC-A--CAGGTG-AAATAACT--TTTA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--CACATAACTGGTGGTGTGTTTGT-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA--ACATCCCCCTGTATCAAAAG
gi|4 : TCGAGTT---AA-CA---GTTA-TTATTCAAAA---AATA--TTTTTC---TTAATATG--T---AAAATA-------AT-GTA-AAG--ATCG--ATTTT--TCAAGAAATTAAAAAATCAAA-TTAAAGCAA---GCAAATAACTA---TTT-TTTCATGTGAT-CCAA-CTATTAACA--AAAAAAT--CTTT----CCAA-------------------ACA-------------AAA--TAATA-AC-T--TAAAACAATATTACTAT-------T-----TTA-TAAGC--A-TGTT-TTAT-AAAGGTAAA---AACA-------CAG--GTAAATATTTGCAA--CAGGTG-AGATAACT--TTCA---TGGTTT-AGACTA-TA-----AT--TG-CTA-------------T--AA--AACATAA-TGGCTGTGTG-TTGT-TTTTAAAA---AA-TT--AGGT-GTT--TTACGGGAA-CACAt
gi|5 : TATTT-TCTCATGT-AT-CCAAATT-TTGATTTAAAAAAATAATCTTGAAACTAACA-TTTTAATTGCCG-CATATATATATAAAGATTAGAAATTGAAG-TCAC--AAAAAAAA-ATTA-------------------A-TA--T--AATGTT-TTATAAAAGATAAA---AAT--------CAG--GTAAATATTCGC-A--CAGGTG-ACATAACT--TTCA---TAGTTT-AGACTA-TA-----AT--TG-CTG-------------TAAAA--AACATAACTGGCTGTGTGTTGTT-TTT--AAA---AG-TT--GGGT-G-T--TCA-GGGAA-CACATCc
gi|6 : ATTT-TCTCATGT-AT-ACAAACC----ATT--AAAAAAT--C-TTGAATTCAACATTTTT----GCTG-CATATA-------------AAAATCAAAA-TC-TAGAAAAAAAATATTACTAC-----------T-TTA-TA--C--GATGTT-TTGG-TAAGGTAAA---AACA-------CAG--GTAAATATTCCC-A--CAGGTG-AAATAACT--TT----------------TA-TA-----AT--TG-CTA-------------T-TAA--AACATAACTGGCTGCGTG-TTGA-TTT--AAA---AG-AT--AAGT-T-T--TCA-GGAAA-TACA-CCACATATATgt
gi|7 : CAAGAGAGTA-C-TATCA-GTATCCAAACTTGAAT--------A---ATTAATTTCTAAAAAC-CAACAT-TTTTGCA--GCAA-ATAAAT-CAAAAATTT--A--TAT-GTA-AAAATTTTG-CATTTT--TAA-GAA--TATGA----------AAAGAAAAA-G-AAATTACTCATATTTCTCTCATGT-ATCCCAAACT-TTGATT--AAAA-----CCTTGAAAACTACA--TTT----GCCG-CACATA-------------AAAA--AATA-AC-C--AAAAAAAgt
gi|8 : CAAGAGAGTA-CGTATCA-GTATC-AAACTTGAATT---AA-------TTAATTTCTT-AAAC-CAACAT-TTTTGCA--GCAATATAAAT-CAAAAATTTAAATTTAT-GTA-AAA--TTTG-CATTTT--TTA-AGAAT-----------A-TGAAAGAAAAA-G-AAATTACT-ATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAA----CCTTGAAA--AACC-TTTT----GCCGACATAAA-------------ATAACCAAAA-ttctatatatt
gi|9 : agtTA-------------TAAATCAAAACTC-T--AAAAAA--CATTATT---------------TTA-TA--C--AAAGTT-TTAT-AAAAGTTAA---AACA-------CAG--GTAAATATTTGC-A--CAGGTG-ACATAACT--TTTA---TAGTAT-AGGCTA-GA-----AT--TG-CTG-------------T--AA--AATATAAATGGCTGTATG-TTGT-TTTA-AAA---AG-TT--AGGC-G-T--TCA-GGGAA-CACAaaatttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAGTATGTTTTTTAAGAGAACAATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111 3333333333333 111 1 11111 1 1111 111 11111111111 2222222222222 1111 4444444444444 1111111 2222222222222 111 1
lowQualScore : 777 3 7 6 8888888888888 1 0 66 666 4 0 77 7777 66 4 5 5 66 5 66 1 5 5 6 3 3 6 6 77777 5 0 5 7777 66 0 111 0 1 0 22222222222 5 0 4444444444444 0 44 5555 3 9999999999999 4 55 55 4 4 777 3333333 55 1 55 4 4 4 66 4 666 1 3 3 99999 55 3 6666666666666 77 55 0 0 8 4 4 99 111 4 55 4 4 55 4 4 3 2
lowQualScore : ... . . . ............. . . .. ... . . .. .... .. . . . .. . .. . . . . . . . . ..... . . . .... .. . ... . . . ........... . . ............. . .. .... . ............. . .. .. . . ... ....... .. . .. . . . .. . ... . . . ..... .. . ............. .. .. . . . . . .. ... . .. . . .. . . . .
lowQualScore : 888 7 3 7 6666666666666 4 1 44 777 4 1 11 5555 99 2 0 0 99 0 99 4 7 0 7 5 2 7 7 66666 0 0 0 8888 99 1 444 1 4 4 22222222222 0 1 4444444444444 8 99 8888 2 4444444444444 4 55 55 0 0 000 0000000 55 4 55 0 0 8 11 9 444 5 6 6 11111 00 6 0000000000000 44 55 8 7 0 0 0 55 000 0 55 0 0 55 0 4 2 0
consensus : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TNT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
Reference ( family-934 ) : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TAT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
gi|1 : CAAGATAG--ATATATCATGTGTCGAAACTTCAATTTCAA-AGTA---ATTAATTT-TTAAA---CAACA---TTTTGCACGCAATATAAACACAACAAC--AAA--TGT-GTA-A-----TTG-CATTTTTTTTA-GAA-ATTAAAAA-TCAGATTAAAG-AAAA-G-AAATAA-TATGATTT-TCTAATGCAAT-CCAAACT-TTA-----AACAAAT---CTTG-AACC-ACA-TTTT----GCCG-C-TATA-------------AAAATC-AAA-TC-----AAAAAAAT-TTACTACAAATG--T--ATGTT-AT---C---ATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GT-AATATTCGC----CAGGTGAAAATAACT--TT-A---TAATGTAAGACTAGTAATTCTAT--TG-CTA-------------T-AAA--AAC--AACTGGTGGTGTG-TGT-T-TTT--AAA---AGTTT--AGGTGG-T--TC--GGGAA-CA
gi|10 : taatgtcaaacactgattttaatggctgattctgacacctaattttatagataaaggagtaatgtttgtttaagagaacaatagataattggttataagtctatttgaaaagtgatctacatgtacctgtggcttgaacactagctaataccagtaatattattaggtacatttgtCAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT--AA---------TTAATTTTTTAAAAC-CACCA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTG-CATTTT--TTt
gi|12 : tTTA---TATTCT-AGACTA-TA-----AG--TGTCTA-------------T-ATT--GATATAATTA-CTGGGTGGTTG-T-TTT--AAA---AA-TTAAAGGT-G-TTCTCA-GGAAACCACATACCGCT---TTAAAAG
gi|13 : CAAGAGAG-AACGTATCCTGTAACCAACCTTTAATTCAAA-AATATTGTTTAATTTCTTAAAATGTAAAA----TTTGCA-
gi|14 : ttagtAAATATTACTAT-------T-----TT-ATA--C--AATGTT-TTAT-ATACGTAA---AG-CA-------CAG--GTAAATATTTGC--A-CAGGTA-AGATAACT--TTCA---TAGTAC-AGACTA-TA-----AT--TG-ttttttttaaattaaaa
gi|15 : TTA---TGGTAT-AGACCA-TA-----AT---G-CTG-------------T-AAA--AACATAACTGGTTGTATA-TTA-T-TTT--AAAC--AG-TT--GGAT-G-T--TTG-AGGAA-CAC
gi|16 : AACA---TTATGCA-GCAATATGAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTT-CGTTTT--TTA-GAA-ATTAAgccat
gi|17 : A--C--AATGTT-TTAT-AAAGGTAA---AAAAA-------AAAATGTAAATATGAGC--A-CAGGTG-AGA
gi|2 : TACTAC-------TTCAT-GT-ATA--TTAGATGCT-TCA------GCGG---ACACA-------CAG--GTAGA------C--A-CAGGCT-AGATCACTGTTTCA---GACTAT-AGAGTA-TA-----ACCATA-TTAGTCATTATTCTCTT-AAACAAACATTACT--CTGTTTG-AT--C-TAT--AAA---AG-TT--AGGT-G----TCA-GGGA
gi|2 : atggctgatcAAATTGAGCT--AA-AA-A---ATTTAGTTATTCAAAC-AAATAAATTTTT----------TAACG-CAACA--TTAAA--TATTGTACAAA--TTCGATATTTT--TTG---A-ATTAAAAA-TCAAAATTAAGAAAAA-A-GAATAA-----------GTCATGT-AC-C--AACT----ATT-----AAAT--CTT--AAACCAA-----------------ATAT----------------AATTAAA--------AAAAAAAAT----CTAC-------T--AT-TTAATA--C--AA-GTTATTAT-AAAGGTAAATCAAACAGTAAAACCAG--GCTAATATTTGCATA-CAGG-G-A-ATAACT--TTCAATGTAGTAA-GGACTA-TC-----A---TG-CTAG------------T-AAA--AAC--AAT--GCTGTGTG-TTG-TCTTT--AAAAATAA-TT--A-GT-G-T--TCA-GGGAA-CACggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgcaacattaaatattgtacaaattcgatattttttgaattaaaaatcaaaattaagaaaaaagaataagtcatgtaccaactattaaatcttaaaccaaatataattaaaaaaaaaaatctactatttaatacaagttattataaaggtaaatcaaacagtaaaaccaggctaatatttgcatacagggaataactttcaatgtagtaaggactatcatgctagtaaaaacaatgctgtgtgttgtctttaaaaataattagtgttcagggaacac
gi|3 : atggctgatctccctgacacctaacttttatagatcaaacagagtaatgtttgtttaagagaataatgactaatatggttatactctatagtctgaaacagtgatctagcctgtgtctacctgtgtgtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgatCAAGATAGTAATATATCATGTGTCGAAACTTCAATTCAAA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTATGCA-GCAATAAAAAA-CAACAACA-AAA--TGT-GTA-AAA--TTTG-CATTTT--TTAAGAA-ATTAAAAA-TCAGATTAAAGAAAAAAG-AAATAGCTAATATTT-TCTCATGC-AT-CCAAACT----ATT--AAAAAAT--CTTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTACAAAATGTT--AT-TT-ATA--C--ATTGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AAATAACT--TTTA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--CACATAACTGGTGGTGTGTTTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA--ACATCCCCCTGTATCAAAAG
gi|4 : TCGAGTT--AACAGTT---ATTA--TTC--AAAA---AATA---TTTTTC--TTAATATG----TAAAA---TAA-----T-GTA-AAG--ATCG--ATTTT--TCAAGAA-ATTAAAAAATCAAATTAAAGCAA---GCAAATAACTA---TTT-TTTCATGTGAT-CCAA-CTATTAACA--AAAAAAT--CTTT----CCAA-------------------ACA-------------AAA--TAATA-AC-T--TAAAACAATATTACTAT-------T-----TT-ATAAGC--A-TGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTTGC--AACAGGTG-AGATAACT--TTCA---TGGTTT-AGACTA-TA-----AT--TG-CTA-------------T--AA--AACATAA-TGGCTGTGTG-TTG-T-TTTTAAAA---AA-TT--AGGT-GTT--TTACGGGAA-CACAt
gi|5 : TATTT-TCTCATGT-AT-CCAAATT-TTGATTTAAAAAAATAATCTTGAAACTAACA-TTTTAATTGCCG-CATATATATATAAAGATTAGAAATTGAAG-TCAC--AAAAAAAA-ATTA--------------------ATA--T--AATGTT-TTATAAAAGATAA---AAAT--------CAG--GTAAATATTCGC--A-CAGGTG-ACATAACT--TTCA---TAGTTT-AGACTA-TA-----AT--TG-CTG-------------TAAAA--AACATAACTGGCTGTGTG-TTGTT-TTT--AAA---AG-TT--GGGT-G-T--TCA-GGGAA-CACATCc
gi|6 : ATTT-TCTCATGT-AT-ACAAACC----ATT--AAAAAAT---CTTGAATTCAACATTTTT----GCTG-CATATA-------------AAAATCAAAA-TC-TAGAAAAAAAATATTACTAC-----------T-TT-ATA--C--GATGTT-TTGG-TAAGGTAA---AAACA-------CAG--GTAAATATTCCC--A-CAGGTG-AAATAACT--TT----------------TA-TA-----AT--TG-CTA-------------T-TAA--AACATAACTGGCTGCGTG-TTG-A-TTT--AAA---AG-AT--AAGT-T-T--TCA-GGAAA-TACA-CCACATATATgt
gi|7 : CAAGAGAGTA-C-TATCA-GTATCCAAACTTGAAT---------A---ATTAATTTCTAAAAAC-CAACAT--TTTTGCA-GCAA-ATAAAT-CAAAAATTT--A--TAT-GTA-AAAATTTTG-CATTTT--TAA-GAATAT----------GA--AAAGAAAAA-G-AAATTACTCATATTTCTCTCATGT-ATCCCAAACT-TTGATT--AAAA-----CCTTGAAAACTACA--TTT----GCCG-CACATA-------------AAAA--AATA-AC-C--AAAAAAAgt
gi|8 : CAAGAGAGTA-CGTATCA-GTATC-AAACTTGAATT--AA---------TTAATTTCTT-AAAC-CAACAT--TTTTGCA-GCAATATAAAT-CAAAAATTTAAATTTAT-GTA-AAA--TTTG-CATTTT--TTA-AGA-AT-----------ATGAAAGAAAAA-G-AAATTACT-ATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAA----CCTTGAAA--AACC-TTTT----GCCGACATAAA-------------ATAACCAAAA-ttctatatatt
gi|9 : agtTA-------------TAAATCAAAACTC-T--AAAAAA--CATTATT---------------TT-ATA--C--AAAGTT-TTAT-AAAAGTTA---AAACA-------CAG--GTAAATATTTGC--A-CAGGTG-ACATAACT--TTTA---TAGTAT-AGGCTA-GA-----AT--TG-CTG-------------T--AA--AATATAAATGGCTGTATG-TTG-T-TTTA-AAA---AG-TT--AGGC-G-T--TCA-GGGAA-CACAaaatttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAGTATGTTTTTTAAGAGAACAATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 111 3333333333333 111 1 11111 1 1111 111 11111111111 2222222222222 1111 4444444444444 1111111 2222222222222 111 1
lowQualScore : 777 3 7 6 8888888888888 1 0 66 666 4 0 77 7777 66 2 5 5 66 5 66 1 5 5 6 3 3 6 6 77777 5 0 5 7777 66 0 111 0 1 0 22222222222 5 0 4444444444444 0 44 5555 3 9999999999999 4 55 55 4 4 777 3333333 55 1 55 4 4 4 66 4 666 1 3 3 99999 55 3 6666666666666 77 55 0 0 8 4 4 99 111 4 55 4 4 55 4 4 3 2
lowQualScore : ... . . . ............. . . .. ... . . .. .... .. . . . .. . .. . . . . . . . . ..... . . . .... .. . ... . . . ........... . . ............. . .. .... . ............. . .. .. . . ... ....... .. . .. . . . .. . ... . . . ..... .. . ............. .. .. . . . . . .. ... . .. . . .. . . . .
lowQualScore : 888 7 3 7 6666666666666 4 1 44 777 4 1 11 5555 99 8 0 0 99 0 99 4 7 0 7 5 2 7 7 66666 0 0 0 8888 99 1 444 1 4 4 22222222222 0 1 4444444444444 8 99 8888 2 4444444444444 4 55 55 0 0 000 0000000 55 4 55 0 0 8 11 9 444 5 6 6 11111 00 6 0000000000000 44 55 8 7 0 0 0 55 000 0 55 0 0 55 0 4 2 0
consensus : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TNT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
Reference ( family-934 ) : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TNT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
gi|1 : CAAGATAG--ATATATCATGTGTCGAAACTTCAATTTCAA-AGTA---ATTAATTT-TTAAA---CAACA---TTTTGCACGCAATATAAACACAACAAC--AAA--TGT-GTA-A-----TTG-CATTTTTTTTA-GAA-ATTAAAAA-TCAGATTAAAG-AAAA-G-AAATAA-TATGATTT-TCTAATGCAAT-CCAAACT-TTA-----AACAAAT---CTTG-AACC-ACA-TTTT----GCCG-C-TATA-------------AAAATC-AAA-TC-----AAAAAAAT-TTACTACAAATG--T--ATGTT-AT---C---ATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GT-AATATTCGC----CAGGTGAAAATAACT--TT-A---TAATGTAAGACTAGTAATTCTAT--TG-CTA-------------T-AAA--AAC--AACTGGTGGTGTG-TGT-T-TTT--AAA---AGTTT--AGGTGG-T--TC--GGGAA-CA
gi|10 : taatgtcaaacactgattttaatggctgattctgacacctaattttatagataaaggagtaatgtttgtttaagagaacaatagataattggttataagtctatttgaaaagtgatctacatgtacctgtggcttgaacactagctaataccagtaatattattaggtacatttgtCAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT--AA---------TTAATTTTTTAAAAC-CACCA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTG-CATTTT--TTt
gi|12 : tTTA---TATTCT-AGACTA-TA-----AG--TGTCTA-------------T-ATT--GATATAATTA-CTGGGTGGTTG-T-TTT--AAA---AA-TTAAAGGT-G-TTCTCA-GGAAACCACATACCGCT---TTAAAAG
gi|13 : CAAGAGAG-AACGTATCCTGTAACCAACCTTTAATTCAAA-AATATTGTTTAATTTCTTAAAATGTAAAA----TTTGCA-
gi|14 : ttagtAAATATTACTAT-------T-----TT-ATA--C--AATGTT-TTAT-ATACGTAA---AG-CA-------CAG--GTAAATATTTGC--A-CAGGTA-AGATAACT--TTCA---TAGTAC-AGACTA-TA-----AT--TG-ttttttttaaattaaaa
gi|15 : TTA---TGGTAT-AGACCA-TA-----AT---G-CTG-------------T-AAA--AACATAACTGGTTGTATA-TTA-T-TTT--AAAC--AG-TT--GGAT-G-T--TTG-AGGAA-CAC
gi|16 : AACA---TTATGCA-GCAATATGAAT-CAAAAATTTAAA--TTT-GTA-AAA--TTTT-CGTTTT--TTA-GAA-ATTAAgccat
gi|17 : A--C--AATGTT-TTAT-AAAGGTAA---AAAAA-------AAAATGTAAATATGAGC--A-CAGGTG-AGA
gi|2 : TACTAC-------TTCAT-GT-ATA--TTAGATGCT-TCA------GCGG---ACACA-------CAG--GTAGA------C--A-CAGGCT-AGATCACTGTTTCA---GACTAT-AGAGTA-TA-----ACCATA-TTAGTCATTATTCTCTT-AAACAAACATTACT--CTGTTTG-AT--C-TAT--AAA---AG-TT--AGGT-G----TCA-GGGA
gi|2 : atggctgatcAAATTGAGCT--AA-AA-A---ATTTAGTTATTCAAAC-AAATAAATTTTT----------TAACG-CAACA--TTAAA--TATTGTACAAA--TTCGATATTTT--TTG---A-ATTAAAAA-TCAAAATTAAGAAAAA-A-GAATAA-----------GTCATGT-AC-C--AACT----ATT-----AAAT--CTT--AAACCAA-----------------ATAT----------------AATTAAA--------AAAAAAAAT----CTAC-------T--AT-TTAATA--C--AA-GTTATTAT-AAAGGTAAATCAAACAGTAAAACCAG--GCTAATATTTGCATA-CAGG-G-A-ATAACT--TTCAATGTAGTAA-GGACTA-TC-----A---TG-CTAG------------T-AAA--AAC--AAT--GCTGTGTG-TTG-TCTTT--AAAAATAA-TT--A-GT-G-T--TCA-GGGAA-CACggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgcaacattaaatattgtacaaattcgatattttttgaattaaaaatcaaaattaagaaaaaagaataagtcatgtaccaactattaaatcttaaaccaaatataattaaaaaaaaaaatctactatttaatacaagttattataaaggtaaatcaaacagtaaaaccaggctaatatttgcatacagggaataactttcaatgtagtaaggactatcatgctagtaaaaacaatgctgtgtgttgtctttaaaaataattagtgttcagggaacac
gi|3 : atggctgatctccctgacacctaacttttatagatcaaacagagtaatgtttgtttaagagaataatgactaatatggttatactctatagtctgaaacagtgatctagcctgtgtctacctgtgtgtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgatCAAGATAGTAATATATCATGTGTCGAAACTTCAATTCAAA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTATGCA-GCAATAAAAAA-CAACAACA-AAA--TGT-GTA-AAA--TTTG-CATTTT--TTAAGAA-ATTAAAAA-TCAGATTAAAGAAAAAAG-AAATAGCTAATATTT-TCTCATGC-AT-CCAAACT----ATT--AAAAAAT--CTTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTACAAAATGTT--AT-TT-ATA--C--ATTGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AAATAACT--TTTA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--CACATAACTGGTGGTGTGTTTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA--ACATCCCCCTGTATCAAAAG
gi|4 : TCGAGTT--AACAGTT---ATTA--TTC--AAAA---AATA---TTTTTC--TTAATATG----TAAAA---TAA-----T-GTA-AAG--ATCG--ATTTT--TCAAGAA-ATTAAAAAATCAAATTAAAGCAA---GCAAATAACTA---TTT-TTTCATGTGAT-CCAA-CTATTAACA--AAAAAAT--CTTT----CCAA-------------------ACA-------------AAA--TAATA-AC-T--TAAAACAATATTACTAT-------T-----TT-ATAAGC--A-TGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTTGC--AACAGGTG-AGATAACT--TTCA---TGGTTT-AGACTA-TA-----AT--TG-CTA-------------T--AA--AACATAA-TGGCTGTGTG-TTG-T-TTTTAAAA---AA-TT--AGGT-GTT--TTACGGGAA-CACAt
gi|5 : TATTT-TCTCATGT-AT-CCAAATT-TTGATTTAAAAAAATAATCTTGAAACTAACA-TTTTAATTGCCG-CATATATATATAAAGATTAGAAATTGAAG-TCAC--AAAAAAAA-ATTA--------------------ATA--T--AATGTT-TTATAAAAGATAA---AAAT--------CAG--GTAAATATTCGC--A-CAGGTG-ACATAACT--TTCA---TAGTTT-AGACTA-TA-----AT--TG-CTG-------------TAAAA--AACATAACTGGCTGTGTG-TTGTT-TTT--AAA---AG-TT--GGGT-G-T--TCA-GGGAA-CACATCc
gi|6 : ATTT-TCTCATGT-AT-ACAAACC----ATT--AAAAAAT---CTTGAATTCAACATTTTT----GCTG-CATATA-------------AAAATCAAAA-TC-TAGAAAAAAAATATTACTAC-----------T-TT-ATA--C--GATGTT-TTGG-TAAGGTAA---AAACA-------CAG--GTAAATATTCCC--A-CAGGTG-AAATAACT--TT----------------TA-TA-----AT--TG-CTA-------------T-TAA--AACATAACTGGCTGCGTG-TTG-A-TTT--AAA---AG-AT--AAGT-T-T--TCA-GGAAA-TACA-CCACATATATgt
gi|7 : CAAGAGAGTA-C-TATCA-GTATCCAAACTTGAAT---------A---ATTAATTTCTAAAAAC-CAACAT--TTTTGCA-GCAA-ATAAAT-CAAAAATTT--A--TAT-GTA-AAAATTTTG-CATTTT--TAA-GAATAT----------GA--AAAGAAAAA-G-AAATTACTCATATTTCTCTCATGT-ATCCCAAACT-TTGATT--AAAA-----CCTTGAAAACTACA--TTT----GCCG-CACATA-------------AAAA--AATA-AC-C--AAAAAAAgt
gi|8 : CAAGAGAGTA-CGTATCA-GTATC-AAACTTGAATT--AA---------TTAATTTCTT-AAAC-CAACAT--TTTTGCA-GCAATATAAAT-CAAAAATTTAAATTTAT-GTA-AAA--TTTG-CATTTT--TTA-AGA-AT-----------ATGAAAGAAAAA-G-AAATTACT-ATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAA----CCTTGAAA--AACC-TTTT----GCCGACATAAA-------------ATAACCAAAA-ttctatatatt
gi|9 : agtTA-------------TAAATCAAAACTC-T--AAAAAA--CATTATT---------------TT-ATA--C--AAAGTT-TTAT-AAAAGTTA---AAACA-------CAG--GTAAATATTTGC--A-CAGGTG-ACATAACT--TTTA---TAGTAT-AGGCTA-GA-----AT--TG-CTG-------------T--AA--AATATAAATGGCTGTATG-TTG-T-TTTA-AAA---AG-TT--AGGC-G-T--TCA-GGGAA-CACAaaatttat
blockSeqs : TAA G T C CAAAAATATTGT T TG AAT . T ATTT TT T T C AT A . A T T A A A A C CTAAT C G C ATTA TA AAT C CATTTTAATT A TATATAAAGATTA CT TAG A AAAATGTTAT A AG TA A A ATC GTAAAAC AT T AT A . G GT T ATG C . . . CA T GTCATTATTCTCT AA CA G T C TA AAT . AA . T TC C C T G
blockSeqs : TA G T C CAAAAGTAA C C T . T ATTT . T . . . . . A . T . T A . . CTCAT . . . TTG . C C CATTTTT . . T AC A TTCAT . . . . . . . . A . . . G . C . A . . . . . G A . T . . A C . . . . . . . T A
blockSeqs : AA A T G AACAGTTA A C T . G ATTT . A . . . . . . . T . T C . . CTAT . . . TTG . C C CATTTT . . A T A TAT . . . . . . . . T . . . G . T . A . . . . . . A . . . . . . . . . . . . . .
blockSeqs : TA G . C AAAAAA C C . . A ATTT . G . . . . . . . T . T A . . CTA . . . TTG . C C CCTTTT . . T T A T . . . . . . . . C . . . A . C . A . . . . . . A . . . . . . . . . . . . .
blockSeqs : TA . . . AA C C . . T ACA . A . . . . . . . . . . A . . . . . . . . C T CATTT . . T C A T . . . . . . . . T . . . G . C . A . . . . . . A . . . . . . . . . . . . .
blockSeqs : AA C C . . T TT . A . . . . . . . . . . . . . C A . . . A T A T . . . . . . . . C . . . C . T . A . . . . . . A . . . . . . . . . . . . .
blockSeqs : AA C . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . A . C . T . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . C . C . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : TA* AAAAA******** C* T* ATTT ** CTAT* TTG* C** T*** T************ *****
originalCons : CAAGAGAGTAACGTATCATGTATCCAAACTTGAATT--AA-AGTA---ATTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TNT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAATATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TC-T--AAAAAAAATATTACTAC-------T--AT-TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
finalCons : CAAGAGAGTA-CGTATCATGTATCCAAACTTGAATTAAAAA--------TTAATTTCTTAAAAC-CAACA---TTTTGCA-GCAATATAAAT-CAAAAATTTAAA--TNT-GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACTAT-ATTT-TCTCATGT-AT-CCAAACTTTG-ATT--AAAAAATC--CTTGAAACCAACA-TTTT----GCCG-CATATA-------------AAAATCAAAA-TCT---AAAAAAAATATTACTACT------------TT-ATA--C--AATGTT-TTAT-AAAGGTAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAGTATGTTTTTTAAGAGAACAATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 444444444444444 11 1 1 1111 1111 2222222222222 11111 222222222 111111 1111111 2222222222222 111 1
lowQualScore : 3 6 3 7 6 555555555555555 3 999 66 4 4 00 0 0 77 4444 77 66 5 66 5 66 1 5 5 6 3 3 6 6 99999 55 5 0 5 7777 66 0 7777 0 1 0 555 5555 5 0 4444444444444 0 44 33333 9 555555555 777 55 111111 4 4 777 3333333 55 1 55 4 4 4 66 4 666 1 3 3 99999 55 3 6666666666666 77 55 0 0 8 4 4 99 111 4 55 4 4 55 4 4 3 2
lowQualScore : . . . . . ............... . ... .. . . .. . . .. .... .. .. . .. . .. . . . . . . . . ..... .. . . . .... .. . .... . . . ... .... . . ............. . .. ..... . ......... ... .. ...... . . ... ....... .. . .. . . . .. . ... . . . ..... .. . ............. .. .. . . . . . .. ... . .. . . .. . . . .
lowQualScore : 5 7 7 3 7 000000000000000 4 666 11 4 4 66 4 1 11 4444 88 99 0 99 0 99 4 7 0 7 5 2 7 7 00000 11 0 0 0 8888 99 1 4444 1 4 4 666 6666 0 1 4444444444444 8 99 00000 4 666666666 888 55 555555 0 0 000 0000000 55 4 55 0 0 8 11 9 444 5 6 6 11111 00 6 0000000000000 44 55 8 7 0 0 0 55 000 0 55 0 0 55 0 4 2 0
consensus : CAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT--AAA--AA------TTAATTTCTTAAAAC-CAAC--A-TTTT-GCA--GCAATATAAAT-CAAAAATTTAAAT-TT--GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACT-A-T-ATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACATTTT----GCCG-CATATA-------------AAAATCAAAA-TC-TA--AAAAAAATATTACTAC---------TTTA---TA--CA------ATGTT-TTATAAAGG-TAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
Reference ( family-934 ) : CAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT--AAA--AA------TTAATTTCTTAAAAC-CAAC--A-TTTT-GCA--GCAATATAAAT-CAAAAATTTAAAT-NT--GTA-AAA--TTTG-CATTTT--TTA-GAA-ATTAAAAA-TCAGATTAAAGAAAAA-G-AAATAACT-A-T-ATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAAAT--CCTTGAAACCAACATTTT----GCCG-CATATA-------------AAAATCAAAA-TC-TA--AAAAAAATATTACTAC---------TTTA---TA--CA------ATGTT-TTATAAAGG-TAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AGATAACT--TTCA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--AACATAACTGGCTGTGTG-TTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA-CACATCCCCCTGTATCAAAAG
gi|1 : CAAGATAG-A-TATATCATGTGTCGAAACTTCAATTTCAAAGTAA------TTAATTT-TTAAA---CAAC--A-TTTT-GCAC-GCAATATAAACACAACAAC--AAAT-GT--GTA-A-----TTG-CATTTTTTTTA-GAA-ATTAAAAA-TCAGATTAAAG-AAAA-G-AAATAA-T-A-TGATTT-TCTAATGCAAT-CCAAACT-TTA-----AACAAAT---CTTG-AACC-ACATTTT----GCCG-C-TATA-------------AAAATC-AAA-TC-----AAAAAAAT-TTACTACAAA------TGTATGTTA--TC------ATGTT-TTATAAAGG-TAA---AAACA-------CAG--GT-AATATTCGC----CAGGTGAAAATAACT--TT-A---TAATGTAAGACTAGTAATTCTAT--TG-CTA-------------T-AAA--AAC--AACTGGTGGTGTG-TGT-T-TTT--AAA---AGTTT--AGGTGG-T--TC--GGGAA-CA
gi|10 : taatgtcaaacactgattttaatggctgattctgacacctaattttatagataaaggagtaatgtttgtttaagagaacaatagataattggttataagtctatttgaaaagtgatctacatgtacctgtggcttgaacactagctaataccagtaatattattaggtacatttgtCAAGAGAGTA-CGTATCATGTATCCAAACTTGAATT--AA-----------TTAATTTTTTAAAAC-CACC--A-TTTT-GCA--GCAATATAAAT-CAAAAATTTAAAT-TT--GTA-AAA--TTTG-CATTTT--TTt
gi|12 : tTTA---TATTCT-AGACTA-TA-----AG--TGTCTA-------------T-ATT--GATATAATTA-CTGGGTGGTTG-T-TTT--AAA---AA-TTAAAGGT-G-TTCTCA-GGAAACCACATACCGCT---TTAAAAG
gi|13 : CAAGAGAGAA-CGTATCCTGTAACCAACCTTTAATTC-AAA--AATATTGTTTAATTTCTTAAAATGTAAA--A--TTT-GCA--
gi|14 : ttagtAAATATTACTAT---------TTTA---TA--CA------ATGTT-TTATATACG-TAA---AG-CA-------CAG--GTAAATATTTGC--A-CAGGTA-AGATAACT--TTCA---TAGTAC-AGACTA-TA-----AT--TG-ttttttttaaattaaaa
gi|15 : TTA---TGGTAT-AGACCA-TA-----AT---G-CTG-------------T-AAA--AACATAACTGGTTGTATA-TTA-T-TTT--AAAC--AG-TT--GGAT-G-T--TTG-AGGAA-CAC
gi|16 : AAC--A-TTAT-GCA--GCAATATGAAT-CAAAAATTTAAAT-TT--GTA-AAA--TTTT-CGTTTT--TTA-GAA-ATTAAgccat
gi|17 : A--CA------ATGTT-TTATAAAGG-TAA---AAAAA-------AAAATGTAAATATGAGC--A-CAGGTG-AGA
gi|2 : TACTAC---------TTCA---TG--TATATTAGATGCT-TCA-----G-CGG---ACACA-------CAG--GTAGA------C--A-CAGGCT-AGATCACTGTTTCA---GACTAT-AGAGTA-TA-----ACCATA-TTAGTCATTATTCTCTT-AAACAAACATTACT--CTGTTTG-AT--C-TAT--AAA---AG-TT--AGGT-G----TCA-GGGA
gi|2 : atggctgatcAAATTGAGCT--AAA--AAA-----TTTAGTTATTCAAAC-AAATAAA-TTTT-TTAACGCAACA-------------TTAAATATT--GTACAAA--TTCGATATTTT--TT---GA-ATTAAAAA-TCAAAATTAAGAAAAA-A-GAATAA-------------GTCATGT-AC-C--AACT----ATT-----AAAT--CTT--AAACCAA----------------ATAT----------------AATTAAA------A--AAAAAAAT-CTACTAT---------TTAA---TA--CA------A-GTTATTATAAAGG-TAAATCAAACAGTAAAACCAG--GCTAATATTTGCATA-CAGG-G-A-ATAACT--TTCAATGTAGTAA-GGACTA-TC-----A---TG-CTAG------------T-AAA--AAC--AAT--GCTGTGTG-TTG-TCTTT--AAAAATAA-TT--A-GT-G-T--TCA-GGGAA-CACggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgataaattgagctaaaaaatttagttattcaaacaaataaattttttaacgcaacattaaatattgtacaaattcgatattttttgaattaaaaatcaaaattaagaaaaaagaataagtcatgtaccaactattaaatcttaaaccaaatataattaaaaaaaaaaatctactatttaatacaagttattataaaggtaaatcaaacagtaaaaccaggctaatatttgcatacagggaataactttcaatgtagtaaggactatcatgctagtaaaaacaatgctgtgtgttgtctttaaaaataattagtgttcagggaacac
gi|3 : atggctgatctccctgacacctaacttttatagatcaaacagagtaatgtttgtttaagagaataatgactaatatggttatactctatagtctgaaacagtgatctagcctgtgtctacctgtgtgtccgctgaagcatctaatatacatgaagtagtaggtaaagtttaaaaataaaatcggtgtagaaataagatatttgtttcttaagtaaaatttgatCAAGATAGTAATATATCATGTGTCGAAACTTCAATTCAAAAGTAA------TTAATTTCTTAAAAC-CAAC--A-TTAT-GCA--GCAATAAAAAA-CAACAACA-AAAT-GT--GTA-AAA--TTTG-CATTTT--TTAAGAA-ATTAAAAA-TCAGATTAAAGAAAAAAG-AAATAGCT-AAT-ATTT-TCTCATGC-AT-CCAAACT----ATT--AAAAAAT--CTTTGAAACCAACATTTT----GCCG-CATATA-------------AAAATCAAAA-TC-TA--AAAAAAATATTACTACAAAATGTTATTTA---TA--CA------TTGTT-TTATAAAGG-TAA---AAACA-------CAG--GTAAATATTCGC--A-CAGGTG-AAATAACT--TTTA---TAGTAT-AGACTA-TA-----AT--TG-CTA-------------T-AAA--CACATAACTGGTGGTGTGTTTG-T-TTT--AAA---AG-TT--AGGT-G-T--TCA-GGGAA--ACATCCCCCTGTATCAAAAG
gi|4 : TCGAGTT--AAC--AG------TTA-TTATTCAAAA---AAT--A-TTTT-TC---TTAATATG----TAAAA---TAA----T--GTA-AAG--ATCG--ATTTT--TCAAGAA-ATTAAAAAATCAAATTAAAGCAA---GCAAATAACT-A-T---TT-TTTCATGTGAT-CCAA-CTATTAACA--AAAAAAT--CTTT----CCAA------------------ACA-------------AAA--TAATA-AC-TT--AAAACAATATTACTAT---------TTTA---TAAGCA-------TGTT-TTATAAAGG-TAA---AAACA-------CAG--GTAAATATTTGC--AACAGGTG-AGATAACT--TTCA---TGGTTT-AGACTA-TA-----AT--TG-CTA-------------T--AA--AACATAA-TGGCTGTGTG-TTG-T-TTTTAAAA---AA-TT--AGGT-GTT--TTACGGGAA-CACAt
gi|5 : -T-ATTT-TCTCATGT-AT-CCAAATT-TTGATTTAAAAAAATAATCTTGAAACTAACATTTTAATTGCCG-CATATATATATAAAGATTAGAAATTGAAG-TCACA--AAAAAAA-ATTA----------------A---TA--TA------ATGTT-TTATAAAAGATAA---AAAT--------CAG--GTAAATATTCGC--A-CAGGTG-ACATAACT--TTCA---TAGTTT-AGACTA-TA-----AT--TG-CTG-------------TAAAA--AACATAACTGGCTGTGTG-TTGTT-TTT--AAA---AG-TT--GGGT-G-T--TCA-GGGAA-CACATCc
gi|6 : -ATTT-TCTCATGT-AT-ACAAACC----ATT--AAAAAAT--C-TTGAATTCAACATTTTT---GCTG-CATATA-------------AAAATCAAAA-TC-TAGAAAAAAAATATTACTAC---------TTTA---TA--CG------ATGTT-TTGGTAAGG-TAA---AAACA-------CAG--GTAAATATTCCC--A-CAGGTG-AAATAACT--TT----------------TA-TA-----AT--TG-CTA-------------T-TAA--AACATAACTGGCTGCGTG-TTG-A-TTT--AAA---AG-AT--AAGT-T-T--TCA-GGAAA-TACA-CCACATATATgt
gi|7 : CAAGAGAGTA-C-TATCA-GTATCCAAACTTGAAT--------AA------TTAATTTCTAAAAAC-CAAC--ATTTTT-GCA--GCAA-ATAAAT-CAAAAATTT--AT-AT--GTA-AAAATTTTG-CATTTT--TAA-GAATAT----------GA--AAAGAAAAA-G-AAATTACTCA-T-ATTTCTCTCATGT-ATCCCAAACT-TTGATT--AAAA-----CCTTGAAAACTACA-TTT----GCCG-CACATA-------------AAAA--AATA-AC-CA--AAAAAAgt
gi|8 : CAAGAGAGTA-CGTATCA-GTATC-AAACTTGAATT--AA-----------TTAATTTCTTAAA-C-CAAC--A-TTTTTGCA--GCAATATAAAT-CAAAAATTTAAAT-TTATGTA-AAA--TTTG-CATTTT--TTA-AGA-AT-----------ATGAAAGAAAAA-G-AAATTACT-A-T-ATTT-TCTCATGT-AT-CCAAACT-TTGATT--AAAAA----CCTTGAAA--AACCTTTT----GCCGACATAAA-------------ATAACCAAAA-ttctatatatt
gi|9 : agtTA-------------TAAATCAAAACTC-TA--AAAAACAT-----TAT---------TTTA---TA--CA------AAGTT-TTATAAAAG-TTA---AAACA-------CAG--GTAAATATTTGC--A-CAGGTG-ACATAACT--TTTA---TAGTAT-AGGCTA-GA-----AT--TG-CTG-------------T--AA--AATATAAATGGCTGTATG-TTG-T-TTTA-AAA---AG-TT--AGGC-G-T--TCA-GGGAA-CACAaaatttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAGTATGTTTTTTAAGAGAACAATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT