lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999999999 111 88888888888888888888888 1111111111 22 11 111111 1111 222 11111 222222 1 22 555555555555555555555555555555555555 1 3 1 999999999999999999999999999999999999999999999999999 555555555555555555555555555555555555555555555555555 1 22222 1 1 5555555555
lowQualScore : 6 22222222222222222222222222222222222 3 555 77 88888888888888888888888 55 777 5 3 9999 3333333333 88 44 9 00 666666 2222 000 4 99999 5555 3 3 3 3 444444 55 666 2 00 55 1 666 0 5 5 5 3 666666666666666666666666666666666666 3 4 6 555555555555555555555555555555555555555555555555555 999999999999999999999999999999999999999999999999999 0 3 66 3 1 22222 0 1 1 1111111111 1
lowQualScore : . ................................... . ... .. ....................... .. ... . . .... .......... .. .. . .. ...... .... ... . ..... .... . . . . ...... .. ... . .. .. . ... . . . . . .................................... . . . ................................................... ................................................... . . .. . . ..... . . . .......... .
lowQualScore : 0 88888888888888888888888888888888888 0 777 22 00000000000000000000000 55 000 7 9 4444 1111111111 11 44 0 11 444444 4444 222 4 77777 4444 0 3 3 3 777777 55 444 2 22 33 2 444 8 7 0 0 2 222222222222222222222222222222222222 5 3 2 888888888888888888888888888888888888888888888888888 000000000000000000000000000000000000000000000000000 0 2 22 0 4 00000 4 4 4 0000000000 4
consensus : ATAGTTCACATTTGTTCAGTCGA-TA--------------A-----TGCAAGGCCTCGAGCCT--CGAC-TAAA---A-------A-TAG-CCTAC-TC--TTT---TCAATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGATAAAAAGACCTCTAA---ATTAGCATGTTTACCACCTTATC-TGTATCCAAATT--TGAAAAAT-CAC-T-AACCTTGA---ACTA--CTGGT---TTCACAAAA-TA-TGGTGGGGGAGTGTTNATTTGCAAAGCCC-GA-TTTT-TT------TTTGACTGNT---T-----GATCG---GGTCAAATCAATGAAAGCG-GGGAGAGACCACT-------AG-TTTGCT----A-------------TA-T-------------AATAGCAAATGGTG--------------ATCTA--------------ATA-------------TAACAATCTCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTAAACTCTTCTTATATCGAAACATATGTCCAAACT-T--TTTTTTTTATATCTAAGGTTAATTTCTA
Reference ( gi|3 ) : ATGGTTCACAT--GTTCA--C-A-TC--------------A-----TGCAAGGCCTCGAGCTT--AGAC-TAAA---A-------A-AA--------TC--TTT---TCAATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGAGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAATCCTTGTACA------TATTCAAATAAAAAGACCTCTAA---ATTAGCACCTTTACCACCTTATC-TGTATTCATATT--TAAAAAAT-CAC-T-AACCTTGA---ACTA--CTGGT---TTAACAAAT-TG-TGGTGGGGGAGTGTTCATTTGCAAAGCCC-GA-TTTTGTT-----TTTTGGTTTTT---T----CAGTCG-TAGGTCAACTCAATGAAAGTGAGGGAGAGTCCACT-------AT-TCTGTT----A-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TGACACTCTCGCACGTGCATCGTGCACGATATACAGAAAAC----ATATTTTTACACTCTTCTTATATCGAAACATATGTCC--AC-----TTTTTTTTATATCTAAGGTTAATTTCTATAC
gi|9 : ATAGTTCACAT--GTTCA--C-A-TTTGTCCTGTCGATAAA-----TGCAAGGTCTCGAGCCT--CGAC-TAAA---A-------A-TAGGCCTACTTC--TTT---TCAATCAATCGATACTAACAA----AAACATCTT---TTATGTGATGTTGCACGTGGAAAGTGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAACCCATGTACA------TATTCAAATAAAAAAA---CTAA---TTTAGCATGTTTATTACCTTCTT-TGTATTCAAATT--TGAAAAAT-CAC-T-AA
gi|1 : taaattattgtcaacggcaggatgcATAGTTCACATTTGTCCAGTCGA-TA--------------AG----TGTAAGGTCTCGAGCCT--CAAG-TAAA---C-------ATAC--------TC--CTT---T---TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcATAGTTCACATTTGTCCAGTCGA-TA--------------AG----TGTAAGGTCTCGAGCCT--CAAG-TAAA---C-------ATAC--------TC--CTT---T---TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatgggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggtttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaatataacaatctagcacgtgcaccgtgcacgatacactgaaaaaatatttatatactcttcttatattgaatcatatgtccaaacatttttttaaatctaaggttaatttctt
gi|10 : gatgcgtcctttaataaattattttcaactataggatgcATAGTTCACAT----TCG----A-TA--------------AA----TGCAAGGCTTCGAGCCT--AAAC-TATA---A-------A-TAGACCTACCCC--TTT---TCAATCAATCGATACTAACAATTTTAAAAAACTT---CTACGTGACGTTGCACGTGAAAAGTTTTGTCTTTGACAGTTTTCAAATAGTCACTTGTTAAAAATCCTTATACA------AATTAAGATAAAAAGACCTCTAA---ATTAGCA---TTATTACC---------ATTAA-ATT--GGAAAAATCCAC-T-AGCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaattaacaatctagcacgtgcaccgtgcacgatacactgaaaaatatttatatactcttcttatattgaatcatatgtccaaacattttttttaaatctaaggttaatttct
gi|6 : ataaattattgtcaacggtaggatgtATAGTTCACAT---TTTA--C-GGTC--------------AATAAATGCAAAACCTCGAGCCT--CGAC-TAAA---G-------A-TA--------CCCCTTT---TCAATCAATCGATACTAACAA----ATATAT-----------------TGCACGTGAAAGGTTCTGTTCTTGACAGTTTTCAA--AGTCACTTAGTGAAAATCCTTGTATATACATGTATTCAAATAAAAAGACCTCTAA------GGTCCC----CCGCCCTATCTTGTG---AGACCAGTAGAAGGT-TAG-T-GA-TTTGG---A-TA--CAGATAAAGTGGTAAATATGCTAATG------TGTTAGTTTGCAAAGCCC-GA-TTTTATT-----CTTAAATCGAC---T----GACT-----GGTCAAATCAGTGAAAGTG-GGGAGAG
gi|7 : aattattgtcaacagtaggatgc--------------A-----TGCAAGACCTCGAGCCT--CGAC-TAAA---A-------A-TAGGCCTACTTC--TTT---TCAATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTACACGTGGAAAGTGCTGTCCTTTACAGTTTT-------TCACTTGGTAAAAATCCTTGTACA------TATTCAAATAAAAAGACCT---A---ATTAGCATGTTTACCACCTTATC-TGTA-----ATT--TGAAAAAT-CACTT-CACCTTGA---ACTA--CTGGT---TTCACAAAA-TA-TGGTGGGGGAGTGTTCATTTGCAAAGCCC-AAGTTTTATTTTTTCTTTTGGTTTTT---T----atgctatatttgtttttcctata
gi|8 : aaattattgtcaacggcaggatgcatagttgacattaaattttgtcctgtcgataa--------------A-----TACAAGGCCTTGAGCCT--CGAT-TAAA---A-------A-TA--------CC--T----------CAATCGATACTGACAA----AAACATCTTAAATTACATGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAACGTCACTTGGTAAAAATCCTTGTACA------TATTCAGATAAAAAGACCTCTAA---TATAGCATGTTTACCACCTTATC-TATATCCAAAAA--TGAAACAT-CAC-T-AACCTT------CTA--CTGGT---TTTACAAA---G-C-ATGGGGGTG-GTTAATTTGCAAAGCCC-AA-TTTT
gi|17 : aatttttgtcaacagtagtatgcatagtttgcatttgtcctgtctatgt--------------A-----TGCA-TGCCTTGAGCTT--CGAC-TAAA---A-------A-TAGGCCTACTTC--TTT---TTAATCAAT----ACTATCAA----AAACATCTT---TTACGTGACGTTGTACGTttaaaaatcaact
gi|13 : --------------A-----TGCAAGGTCTAGAGCCT--CGATATAAA---ATGGGCCTA-CT--------TC--TAT---TCAATCAATC
gi|4 : tttaataaattattgtcaacgacaagatgcatagtccacatctgtgttatggataaCAAAGCCTCGA-CTTCAAGA--TACATGTA-------C-GC--------TT--TTTCAATTAATCAATCGATACTAACAA----AACTATCTT---TTTCGTGGTGTTGCACGTGAAAATGTCTGTT-TTGGCAATGTTCATAAAGTCACCTGGTAAAAATCCATGCACA------TATTTGGATAAAAAGACCTCTAA---ATTAGAATGTTTACCAGCTTATC-TGTACCCAGA----GAAAAGAA-AAA-TAAACCT------ACTC--CTGAC---TTCACAAAA-CA-TGG-GGTGGAG-G-TAAAATGCAAAGCCC-GA-T-----------------TTTCT---TAAAACGACCGATTGGTCAAATCGGTGAAAGTG-GGGAGAGACCATT-------AG-TCTAGT----A-------------TATT-------------AAT
gi|5 : atgtatgttcatatgatatgttctttaattgttaacaacaggatacacagttCACTTGGTAATAATCCTTGTACA------CATTCAGATAATAGGACTTCTAA---ATTAGCATGTTTACCACCTAATC-TGTATCCAAATT--TGAAAAAT-CAC-T-AACTTT------CTA--CTGGT---TTCACAAAG-TA-CGCTGACGGGATGTTCATTTGCAAAGCCC-GA-TTTTTTT-----AATCGACTGTT---T-------------GGTCAAATCAATAAAAGTG-GAGAGAGGCCACT-------AG-TCTGCT----ATAATTGTTTTTCCTA-T-------------AATTGCAAATAATGGTAGTGTGAAAAACATTCA--------------AAA-------------TTACAATCTCAAACGTGTACTGTGCACGATACACAGAAAACACATATATTTCTAAACTCTTTATATATCGAAAAATATGTCC--ACTTT--TTTTTTTTATATCTAAGGTTAATTTCTtttcctatgcgaaggtccttattgatattctttgacatttaaaattat
gi|6 : CTAACACATTAGCATATTTACCACTTTATC-TGTATCC-----------AAAT-CAC-T-AACCTT------CTA--CTGGT---CTCACAAGA-TA-GGGCGGGGGAtt
gi|16 : aattattgtcaacagtaggatgcatagttcacattttacggtcaataaatgcaaaacctcgagcctcgactaaagataccccttttcaatcaatcgatactaacaaatatattgcacgtgaaaggttctgttcttgacagttttcaaagtcacttagtgaaaatccttgtatatacatgtattcaaataaaaagacctctaaggTACCACCTTATC-TGTATTCAAATT--TAAAAAAT-CAC-T-AACCTGGA---ACTA--CTGGT---TTAACAAAA-TG-TGGTGGGGGAGTGTTCATTTGCAAtttgcaaagcccgattttattcttaaatcgactgactggtcaaatcagtgaaagtggggagagatgctatatttgtttttcctata
gi|18 : TCAAATT--TGAAAAAT-CAC-T-AACCTTGATCAACTATACTGGT---TTCACAAAA-TA-TGGTGGGAAAGTATTTATT
gi|1 : T--TGAAAAAT-CAC-T-ACCC---A---ACTA--CTGTT---TTCACAAAA-TA-TGGGGGGGGGG-GT-AATTTACAACGCCC-GA-TTTT----------CTGACT------------GATCG----GTCAAATCAATGAAAACG-GGGAGGGACCACT-------GG-TTTGCT----A-------------TA-TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTAGTGAAAAACGTTCAATA-------------TAACAATCTAGCACGTGCACCGTGCACGATACACTGAAAAA----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAAAC-----ATTTTTTTAAATCTAAGGTTAATTTCT
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT--TGAAAAAT-CAC-T-ACCC---A---ACTA--CTGTT---TTCACAAAA-TA-TGGGGGGGGGGTA---ATTTACAACGCCC-GA-TTTT----------CTGACT------------GATCG----GTCAAATCAATGAAAACG-GGGAGGGACCACTGGTTGCTATATTTGTTTTTCC-------------TA-T-------------AATAGCAAATGGTG--------------ATCTA--------------GTGAAAAACGTTCAATTAACAATCTAGCACGTGCACCGTGCACGATACACTGAAAA-----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAAACA----TTTTTTTTAAATCTAAGGTTAATTTCTt
gi|15 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc---TTCACAAAA-TA-TGGTGGGGG--TGTTTATTTGCAAAGCCCGGA-T----TT-----TTTTGGGGGGTAAAT----CAACTGATTGGTAAATTCAATGAAAGTGGGGGAGAGGCCACT-------A
gi|11 : T-------AT-TTT-TC----C-------------TA-T-------------AATAGCAAATAATG--------------ATCT--------------------------------------CTCGCACGTGCATTGTGCACGATACACAGAAAAC----ATATTTCTAAACTTTTCTTATATCGAAACATATGTCC--ACTATTTTTTCTTTTATATCTAAGGTTAATATCTA
gi|14 : gtattACCCTCGCACGTG-------CACGATATACAGAAAAC----ATATTTCTAAACTCTTCTTATATCGAAACATATGTCC--AC-------TTTTTTATATCTAAGGTTAATTTC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTATCCATATTTAGATTTAAAAAAAAGATCCCTACATTGGCATGTCTACCAGTTTATATGGGCTATATCTAAAACTGAAGAATAAAGTGTTCACTTAGCCAACAACTGATTCCACAAA
Alignments
lowQualScore : 11111111111111 2 2222222222222 111111 111111 11111 11111 11111111111 11111111 2222222 11111111 5555555555555555555555555555555555 999999999999999999999999999 999999999999999999999999999999999999999999999999999 1111 4444444
lowQualScore : 55555555555555 0 4 8 0 3 3 2 6666666666666 3 333333 2 8888 88888 0 55 2 222222 11111 00000 0 33333333333 2 11111111 3 6 0000000 55 33333333 4 77 2 1 4 66 9999999999999999999999999999999999 4 77 5 2 111111111111111111111111111 222222222222222222222222222222222222222222222222222 6 1 2 4444 1 3 9999999
lowQualScore : .............. . . . . . . . ............. . ...... . .... ..... . .. . ...... ..... ..... . ........... . ........ . . ....... .. ........ . .. . . . .. .................................. . .. . . ........................... ................................................... . . . .... . . .......
lowQualScore : 77777777777777 1 0 0 5 6 6 6 4444444444444 6 444444 5 5555 44444 8 44 3 888888 11111 00000 7 44444444444 4 22222222 1 2 9999999 00 22222222 3 66 1 0 4 11 4444444444444444444444444444444444 3 11 7 5 000000000000000000000000000 222222222222222222222222222222222222222222222222222 7 0 5 2222 0 7 8888888
consensus : ATAGTTCACATT------TGT-CCNGTCGATA-AATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--T-T-TT----------TCGACT-GACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTATA-------------T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAACA----TATTTCTANACTCTTCTTATATCGAAACATATGTCCA--AC---TTTTTTTTATATCTAAGGTTAATTTCTA
Reference ( family-914 ) : ATAGTTCACATT------TGT-TCAGTCGATA-A-TGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--T-T-TT----------TTGACT-GNTTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTTTGCTATA-------------T-------------AATAGCAAATGGTG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAACA----TATTTCTAAACTCTTCTTATATCGAAACATATGTCCAA-AC-TTTTTTTTTTATATCTAAGGTTAATTTCTA
gi|1 : ATAGTTCACATT------TGT-CCAGTCGATA-AGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|1 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-G-GT-AATTTACAACGCCC-GATTT--T-------------------CT-GACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGTTTGCTATA-------------TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTAGTGAAAAACGTTCAATA-------------TAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAAAA----TATTTATATACTCTTCTTATATTGAATCATATGTCCAA-AC---ATTTTTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatgggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggtttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaatataacaatctagcacgtgcaccgtgcacgatacactgaaaaaatatttatatactcttcttatattgaatcatatgtccaaacatttttttaaatctaaggttaatttctt
gi|10 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATAGTTCACATT---------------CGATA-AATGCAAGGCTTCGAGCCTAAACT-A-TAAAT-A-GACCTAC-C-CCTTTTC-----AATCAATCGATACTAACAATTTTAAAAAACTT---CTACGTGACGTTGCACGTGAAAAGTTTTGTCTTTGACAGTTTTCAAATAGTCACTTGTTAAAAATCCTTATACA------AATTAAGAT-----AAAAAGACCTCTAAATTAGCATTATTACCA--TT------------------------AAATTGGAAAAA--------TCCAC-TAGCCTt
gi|11 : ataaattattgtcaacggtaggatgtTA-------------T-------------AATAGCAAATAATG--------------ATC--------------------------------------TC-TCGCACGTGCATTGTGCACGATACACAGAAAACA----TATTTCTAAACTTTTCTTATATCGAAACATATGTCCACTAT-TTTTTCTTTTATATCTAAGGTTAATATCTA
gi|12 : gtatttatttttccTTATCCA------TATTTAGATTTAAAAAAAAGATCCCTACATTGGCATGTCTACCAGTTTATATGGGCTATAT----CT-----AAAACTGAAGAATAAAGTGTT-CACTTAGCC---A---ACAA--C--------TGATTCCACAAA
gi|13 : ATAGTCCACATC------TGTGTTA-TGGATA-AATGCAAGGTCTAGAGCCTCGA-T-ATAAAATGG-G-CCTACTT-C-TATTC-----AATCAATC
gi|14 : tttaataaattattgtcaacgacaagatgcG--------------ATCTA--------------G-A-------------GAAAAACCCTCGCACGTG-------CACGATATACAGAAAACA----TATTTCTAAACTCTTCTTATATCGAAACATATGTCCA--------CTTTTTTATATCTAAGGTTAATTTC
gi|15 : TTCACAAAATATGGTGGGGG---TGTTTATTTGCAAAGCCCGGATTT--T-T-TTGGGGGGTAAATCAACT-GATT--------GGTAAATTCAATGAAAGTGG-GGGAGAGGCCACTA
gi|16 : TACCACCTTAT-----CTGTAT----TC-----AAATTTAAAAAA--------T-CAC-TAACCTGGA---ACTA--C--------TGGTTTAACAAAATGTGGTGGGGGA-GTGTTCATTTGCAA
gi|17 : -A-TGCA-TGCCTTGAGCTTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTT-----AATCAAT----ACTATCAA----AAACATCTT---TTACGTGACGTTGTACGT
gi|18 : C-----AAATTTGAAAAA--------T-CAC-TAACCTTGATCAACTATAC--------TGGTTTCACAAAATATGGTGGGAAA-GTATTTATT
gi|2 : tATAGTTCACATT------TGT-CCAGTCGATA-AGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-GT---AATTTACAACGCCC-GATTT--T-------------------CT-GACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGTT-GCTATA-------------TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTA--------------GTGAAAAACGTTCAATTAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAA-A----TATTTATATACTCTTCTTATATTGAATCATATGTCCAA-AC--ATTTTTTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaattaacaatctagcacgtgcaccgtgcacgatacactgaaaaatatttatatactcttcttatattgaatcatatgtccaaacattttttttaaatctaaggttaatttct
gi|3 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATGGTTCACAT--------GT-TCA--C-ATC-A-TGCAAGGCCTCGAGCTTAGACT-A-AAAA---------AA-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGAGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCTCTAAATTAGCACCTTTACCACCTTAT-----CTGTAT----TC-----ATATTTAAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTAACAAATTGTGGTGGGGGA-GTGTTCATTTGCAAAGCCC-GATTTTGT-T-TT----------TTGGTT-TTTTCAGTCGTAGGTCAACTCAATGAAAGT-GAGGGAGAGTCCACTATTCTGTTATA-------------T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TGACACTC-TCGCACGTGCATCGTGCACGATATACAGAAAACA----TATTTTTACACTCTTCTTATATCGAAACATATGTCCA------CTTTTTTTTATATCTAAGGTTAATTTCTA
gi|4 : AGCCTCGACTTC-AAGAT-ACA-TGTAC-G-C-TTTTTCAATTAATCAATCGATACTAACAA----AACTATCTT---TTTCGTGGTGTTGCACGTGAAAATGTCTGTT-TTGGCAATGTTCATAAAGTCACCTGGTAAAAATCCATGCACA------TATTTGGAT-----AAAAAGACCTCTAAATTAGAATGTTTACCAGCTTAT-----CTGTAC----CCAGAGAAAA---GAAAAA--------T--A---AACCT------ACTC--C--------TGACTTCACAAAACATGG-GGTGGA-G-G-TAAAATGCAAAGCCC-GATTT--T-C-TT----------AAAAC--GACCGA-TT---GGTCAAATCGGTGAAAGT-G-GGGAGAGACCATTAGTCTAGTATAT------------T-------------AATtac
gi|5 : atgtatgttcatatgatatgttctttaattgttaacaacaggatacacagttcaaCACTTGGTAATAATCCTTGTACA------CATTCAGAT-----AATAGGACTTCTAAATTAGCATGTTTACCACCTAAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACTTT------CTA--C--------TGGTTTCACAAAGTACGCTGACGGG-ATGTTCATTTGCAAAGCCC-GATTT--T-T-TTAA--------TCGACT-GTTTG--------GTCAAATCAATAAAAGT-G-GAGAGAGGCCACTAGTCTGCTATAATTGTTTTTCCTAT-------------AATTGCAAATAATGGTAGTGTGAAAAACATTCA--------------AAA-------------TTACAATC-TCAAACGTGTACTGTGCACGATACACAGAAAACACATATATTTCTAAACTCTTTATATATCGAAAAATATGTCC---ACTTTTTTTTTTTATATCTAAGGTTAATTTCTtttcctatgcgaaggtccttattgatattctttgacatttaaaattat
gi|6 : ATAGTTCACATT------T-T-ACGGTCAATA-AATGCAAAACCTCGAGCCTCGACT-A-AAGAT-A-C-CC------C-TTTTC-----AATCAATCGATACTAACAA----ATATAT-----------------TGCACGTGAAAGGTTCTGTTCTTGACAGTTTTC--AAAGTCACTTAGTGAAAATCCTTGTATATACATGTATTCAAAT-----AAAAAGACCTCTAAG-------GTCCCCCGCCCTAT-----CT-TGTGAGACC-----AG---TAGAAGG--------T-TAG-TGA-TTTGG---A-TA--CAGATAAAGTGGT------AAATATGCT----AATGTGTTAGTTTGCAAAGCCC-GATTT--TAT-TC----------TTAAATCGACTGA--CT--GGTCAAATCAGTGAAAGT-G-GGGAGAGA---------TGCTATA-------------T-------------tt
gi|7 : aattattgtcaacagtaggatgcATAGTTGACATTAAATTTTGT-CCTGTCGATA-AATGCAAGACCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTACACGTGGAAAGTGCTGTCCTTTACAGTTTT-------TCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCT---AATTAGCATGTTTACCACCTTAT-----CTGT--------------AATTTGAAAAA--------T-CACTTCACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTCATTTGCAAAGCCC-AAGTT--T-TATT----------TTttgtttttcctata
gi|8 : aaattattgtcaacggcaggatgcATAGTTTGCATT------TGT-CCTGTCTATGTA-TACAAGGCCTTGAGCCTCGATT-A-AAAAT-A---CC--------------------TCAATCGATACTGACAA----AAACATCTTAAATTACATGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAACGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAATATAGCATGTTTACCACCTTAT-----CTATAT----CC-----AAAAATGAAACA--------T-CAC-TAACCTT------CTA--C--------TGGTTTTACAAAGCATGG-GGGTG----GTTAATTTGCAAAGCCC-AATTT--T-T-Tttcttttggtttttt
gi|9 : aatttttgtcaacagtagtatgcGTTCACATT------TGT-CCTGTCGATA-AATGCAAGGTCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTATGTGATGTTGCACGTGGAAAGTGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAACCCATGTACA------TATTCAAAT-----AAAAAAA---CTAATTTAGCATGTTTATTACCTTCT-----TTGTAT----TC-----AAATTTGAAAAA--------T-CAC-TAAaaaaatcaact
Alignments
lowQualScore : 11111111 2222222222222 111111 111111 11111 11111 11111111111 11111111 2222222 11111111 5555555555555555555555555555 777777777777777777777777777777 999999999999999999999999999999999999999999999999999 11111 444444444
lowQualScore : 33333333 2 0 0 3 3 2 6666666666666 3 333333 2 8888 88888 0 55 2 222222 11111 00000 0 33333333333 2 11111111 3 6 0000000 55 33333333 4 77 2 1 4 66 5555555555555555555555555555 4 77 5 5 333333333333333333333333333333 222222222222222222222222222222222222222222222222222 6 1 66666 1 1 444444444 99
lowQualScore : ........ . . . . . . ............. . ...... . .... ..... . .. . ...... ..... ..... . ........... . ........ . . ....... .. ........ . .. . . . .. ............................ . .. . . .............................. ................................................... . . ..... . . ......... ..
lowQualScore : 11111111 6 1 5 6 6 6 4444444444444 6 444444 5 5555 44444 8 44 3 888888 11111 00000 7 44444444444 4 22222222 1 2 9999999 00 22222222 3 66 1 0 4 11 1111111111111111111111111111 3 11 7 2 000000000000000000000000000000 222222222222222222222222222222222222222222222222222 7 0 77777 0 0 222222222 22
consensus : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCC-A--AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
Reference ( family-914 ) : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCC-A--AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
gi|1 : ATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|1 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-G-GT-AATTTACAACGCCC-GATTT--T--------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGTTTGCTA-------------TA-TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTAGTGAAAAACGTTCAATA-------------TAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAAA----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAA--AC---ATTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatgggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggtttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaatataacaatctagcacgtgcaccgtgcacgatacactgaaaaaatatttatatactcttcttatattgaatcatatgtccaaacatttttttaaatctaaggttaatttctt
gi|10 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATAGTTCACATT--------------CGATAAATGCAAGGCTTCGAGCCTAAACT-A-TAAAT-A-GACCTAC-C-CCTTTTC-----AATCAATCGATACTAACAATTTTAAAAAACTT---CTACGTGACGTTGCACGTGAAAAGTTTTGTCTTTGACAGTTTTCAAATAGTCACTTGTTAAAAATCCTTATACA------AATTAAGAT-----AAAAAGACCTCTAAATTAGCATTATTACCA--TT------------------------AAATTGGAAAAA--------TCCAC-TAGCCTt
gi|11 : ataaattattgtcaacggtaggatgt-------------TA-T-------------AATAGCAAATAATG--------------ATC--------------------------------------TC-TCGCACGTGCATTGTGCACGATACACAGAAAAC----ATATTTCTAAACTTTTCTTATATCGAAACATATGTCC-ACTAT---TTTTTCTTTTATATCTAAGGTTAATATCTA
gi|12 : gtatttatttttccTTATCCA------TATTTAGATTTAAAAAAAAGATCCCTACATTGGCATGTCTACCAGTTTATATGGGCTATAT----CT-----AAAACTGAAGAATAAAGTGTT-CACTTAGCC---A---ACAA--C--------TGATTCCACAAA
gi|13 : ATAGTCCACATC------TGTGTTATGGATAAATGCAAGGTCTAGAGCCTCGA-T-ATAAAATGG-G-CCTACTT-C-TATTC-----AATCAATC
gi|14 : tttaataaattattgtcaacgacaagatgcG--------------ATCTA--------------G-A-------------GAAAAACCCTCGCACGTG-------CACGATATACAGAAAAC----ATATTTCTAAACTCTTCTTATATCGAAACATATGTCC-A--------CTT--TTTTATATCTAAGGTTAATTTC
gi|15 : TTCACAAAATATGGTGGGGG---TGTTTATTTGCAAAGCCCGGATTT--TT-TTGGGGGGTAAATCAACTGA-TT---GGTAAATTCAATGAAAGTGG-GGGAGAGGCCACTA
gi|16 : TACCACCTTAT-----CTGTAT----TC-----AAATTTAAAAAA--------T-CAC-TAACCTGGA---ACTA--C--------TGGTTTAACAAAATGTGGTGGGGGA-GTGTTCATTTGCAA
gi|17 : ATGCA-TGCCTTGAGCTTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTT-----AATCAAT----ACTATCAA----AAACATCTT---TTACGTGACGTTGTACGT
gi|18 : C-----AAATTTGAAAAA--------T-CAC-TAACCTTGATCAACTATAC--------TGGTTTCACAAAATATGGTGGGAAA-GTATTTATT
gi|2 : tATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-GT---AATTTACAACGCCC-GATTT--T--------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGT-TGCTA-------------TA-TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTA--------------GTGAAAAACGTTCAATTAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAA-----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAA--ACA--TTTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaattaacaatctagcacgtgcaccgtgcacgatacactgaaaaatatttatatactcttcttatattgaatcatatgtccaaacattttttttaaatctaaggttaatttct
gi|3 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATGGTTCACATG------T-TCACATC-----ATGCAAGGCCTCGAGCTTAGACT-A-AAAA---------AA-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGAGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCTCTAAATTAGCACCTTTACCACCTTAT-----CTGTAT----TC-----ATATTTAAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTAACAAATTGTGGTGGGGGA-GTGTTCATTTGCAAAGCCC-GATTTTGTT-TT------TTGGTTTTTTCAGTCGTAGGTCAACTCAATGAAAGT-GAGGGAGAGTCCACTATTCTGTTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TGACACTC-TCGCACGTGCATCGTGCACGATATACAGAAAAC----ATATTTTTACACTCTTCTTATATCGAAACATATGTCC----AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
gi|4 : AGCCTCGACTTC-AAGAT-ACA-TGTAC-G-C-TTTTTCAATTAATCAATCGATACTAACAA----AACTATCTT---TTTCGTGGTGTTGCACGTGAAAATGTCTGTT-TTGGCAATGTTCATAAAGTCACCTGGTAAAAATCCATGCACA------TATTTGGAT-----AAAAAGACCTCTAAATTAGAATGTTTACCAGCTTAT-----CTGTAC----CCAGAGAAAA---GAAAAA--------T--A---AACCT------ACTC--C--------TGACTTCACAAAACATGG-GGTGGA-G-G-TAAAATGCAAAGCCC-GATTT--TC-TT------AAAAC-GACCGA-TT---GGTCAAATCGGTGAAAGT-G-GGGAGAGACCATTAGTCTAGTA-------------TATT-------------AATtac
gi|5 : atgtatgttcatatgatatgttctttaattgttaacaacaggatacacagttcaaCACTTGGTAATAATCCTTGTACA------CATTCAGAT-----AATAGGACTTCTAAATTAGCATGTTTACCACCTAAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACTTT------CTA--C--------TGGTTTCACAAAGTACGCTGACGGG-ATGTTCATTTGCAAAGCCC-GATTT--TT-TTAA----TCGACTG------TTT--GGTCAAATCAATAAAAGT-G-GAGAGAGGCCACTAGTCTGCTATAATTGTTTTTCCTA-T-------------AATTGCAAATAATGGTAGTGTGAAAAACATTCA--------------AAA-------------TTACAATC-TCAAACGTGTACTGTGCACGATACACAGAAAACACATATATTTCTAAACTCTTTATATATCGAAAAATATGTCC----ACTTTTTTT--TTTTATATCTAAGGTTAATTTCTtttcctatgcgaaggtccttattgatattctttgacatttaaaattat
gi|6 : ATAGTTCACATT------T-TACGGTCAATAAATGCAAAACCTCGAGCCTCGACT-A-AAGAT-A-C-CC------C-TTTTC-----AATCAATCGATACTAACAA----ATATA-----------------TTGCACGTGAAAGGTTCTGTTCTTGACAGTTTTC--AAAGTCACTTAGTGAAAATCCTTGTATATACATGTATTCAAAT-----AAAAAGACCTCTAAG-------GTCCCCCGCCCTAT-----CT-TGTGAGACC-----AG---TAGAAGG--------T-TAG-TGA-TTTGG---A-TA--CAGATAAAGTGGT------AAATATGCT----AATGTGTTAGTTTGCAAAGCCC-GATTT--TA-TTCTTAAATCGACTGACT--------GGTCAAATCAGTGAAAGT-G-GGGAGAGA---------TGCTA-------------TA-T-------------tt
gi|7 : aattattgtcaacagtaggatgcATAGTTGACATTAAATTTTGTCCTGTCGATAAATGCAAGACCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTACACGTGGAAAGTGCTGTCCTTTACAGTTTT-------TCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCT---AATTAGCATGTTTACCACCTTAT-----CTGT--------------AATTTGAAAAA--------T-CACTTCACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTCATTTGCAAAGCCC-AAGTT--TTATT------Tttgtttttcctata
gi|8 : aaattattgtcaacggcaggatgcATAGTTTGCATT------TGTCCTGTCTATGTATACAAGGCCTTGAGCCTCGATT-A-AAAAT-A---CC--------------------TCAATCGATACTGACAA----AAACATCTTAAATTACATGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAACGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAATATAGCATGTTTACCACCTTAT-----CTATAT----CC-----AAAAATGAAACA--------T-CAC-TAACCTT------CTA--C--------TGGTTTTACAAAGCATGG-GGGTG----GTTAATTTGCAAAGCCC-AATTT--TT-Ttttcttttggtttttt
gi|9 : aatttttgtcaacagtagtatgcGTTCACATT------TGTCCTGTCGATAAATGCAAGGTCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTATGTGATGTTGCACGTGGAAAGTGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAACCCATGTACA------TATTCAAAT-----AAAAAAA---CTAATTTAGCATGTTTATTACCTTCT-----TTGTAT----TC-----AAATTTGAAAAA--------T-CAC-TAAaaaaatcaact
Alignments
lowQualScore : 11111111 2222222222222 111111 111111 11111 11111 11111111111 11111111 2222222 11111111 5555555555555555555555555555 777777777777777777777777777777 999999999999999999999999999999999999999999999999999 11111 444444444
lowQualScore : 33333333 2 0 0 3 3 2 6666666666666 3 333333 2 8888 88888 0 55 2 222222 11111 00000 0 33333333333 2 11111111 3 6 0000000 55 33333333 4 77 2 1 4 66 5555555555555555555555555555 4 77 5 5 333333333333333333333333333333 222222222222222222222222222222222222222222222222222 6 1 66666 1 1 444444444 99
lowQualScore : ........ . . . . . . ............. . ...... . .... ..... . .. . ...... ..... ..... . ........... . ........ . . ....... .. ........ . .. . . . .. ............................ . .. . . .............................. ................................................... . . ..... . . ......... ..
lowQualScore : 11111111 6 1 5 6 6 6 4444444444444 6 444444 5 5555 44444 8 44 3 888888 11111 00000 7 44444444444 4 22222222 1 2 9999999 00 22222222 3 66 1 0 4 11 1111111111111111111111111111 3 11 7 2 000000000000000000000000000000 222222222222222222222222222222222222222222222222222 7 0 77777 0 0 222222222 22
consensus : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCC-A--AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
Reference ( family-914 ) : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCC-A--AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
gi|1 : ATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|1 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-G-GT-AATTTACAACGCCC-GATTT--T--------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGTTTGCTA-------------TA-TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTAGTGAAAAACGTTCAATA-------------TAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAAA----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAA--AC---ATTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatgggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggtttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaatataacaatctagcacgtgcaccgtgcacgatacactgaaaaaatatttatatactcttcttatattgaatcatatgtccaaacatttttttaaatctaaggttaatttctt
gi|10 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATAGTTCACATT--------------CGATAAATGCAAGGCTTCGAGCCTAAACT-A-TAAAT-A-GACCTAC-C-CCTTTTC-----AATCAATCGATACTAACAATTTTAAAAAACTT---CTACGTGACGTTGCACGTGAAAAGTTTTGTCTTTGACAGTTTTCAAATAGTCACTTGTTAAAAATCCTTATACA------AATTAAGAT-----AAAAAGACCTCTAAATTAGCATTATTACCA--TT------------------------AAATTGGAAAAA--------TCCAC-TAGCCTt
gi|11 : ataaattattgtcaacggtaggatgt-------------TA-T-------------AATAGCAAATAATG--------------ATC--------------------------------------TC-TCGCACGTGCATTGTGCACGATACACAGAAAAC----ATATTTCTAAACTTTTCTTATATCGAAACATATGTCC-ACTAT---TTTTTCTTTTATATCTAAGGTTAATATCTA
gi|12 : gtatttatttttccTTATCCA------TATTTAGATTTAAAAAAAAGATCCCTACATTGGCATGTCTACCAGTTTATATGGGCTATAT----CT-----AAAACTGAAGAATAAAGTGTT-CACTTAGCC---A---ACAA--C--------TGATTCCACAAA
gi|13 : ATAGTCCACATC------TGTGTTATGGATAAATGCAAGGTCTAGAGCCTCGA-T-ATAAAATGG-G-CCTACTT-C-TATTC-----AATCAATC
gi|14 : tttaataaattattgtcaacgacaagatgcG--------------ATCTA--------------G-A-------------GAAAAACCCTCGCACGTG-------CACGATATACAGAAAAC----ATATTTCTAAACTCTTCTTATATCGAAACATATGTCC-A--------CTT--TTTTATATCTAAGGTTAATTTC
gi|15 : TTCACAAAATATGGTGGGGG---TGTTTATTTGCAAAGCCCGGATTT--TT-TTGGGGGGTAAATCAACTGA-TT---GGTAAATTCAATGAAAGTGG-GGGAGAGGCCACTA
gi|16 : TACCACCTTAT-----CTGTAT----TC-----AAATTTAAAAAA--------T-CAC-TAACCTGGA---ACTA--C--------TGGTTTAACAAAATGTGGTGGGGGA-GTGTTCATTTGCAA
gi|17 : ATGCA-TGCCTTGAGCTTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTT-----AATCAAT----ACTATCAA----AAACATCTT---TTACGTGACGTTGTACGT
gi|18 : C-----AAATTTGAAAAA--------T-CAC-TAACCTTGATCAACTATAC--------TGGTTTCACAAAATATGGTGGGAAA-GTATTTATT
gi|2 : tATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA--------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-GT---AATTTACAACGCCC-GATTT--T--------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGT-TGCTA-------------TA-TTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTA--------------GTGAAAAACGTTCAATTAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAA-----ATATTTATATACTCTTCTTATATTGAATCATATGTCCAA--ACA--TTTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaattaacaatctagcacgtgcaccgtgcacgatacactgaaaaatatttatatactcttcttatattgaatcatatgtccaaacattttttttaaatctaaggttaatttct
gi|3 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATGGTTCACATG------T-TCACATC-----ATGCAAGGCCTCGAGCTTAGACT-A-AAAA---------AA-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGAGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCTCTAAATTAGCACCTTTACCACCTTAT-----CTGTAT----TC-----ATATTTAAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTAACAAATTGTGGTGGGGGA-GTGTTCATTTGCAAAGCCC-GATTTTGTT-TT------TTGGTTTTTTCAGTCGTAGGTCAACTCAATGAAAGT-GAGGGAGAGTCCACTATTCTGTTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TGACACTC-TCGCACGTGCATCGTGCACGATATACAGAAAAC----ATATTTTTACACTCTTCTTATATCGAAACATATGTCC----AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
gi|4 : AGCCTCGACTTC-AAGAT-ACA-TGTAC-G-C-TTTTTCAATTAATCAATCGATACTAACAA----AACTATCTT---TTTCGTGGTGTTGCACGTGAAAATGTCTGTT-TTGGCAATGTTCATAAAGTCACCTGGTAAAAATCCATGCACA------TATTTGGAT-----AAAAAGACCTCTAAATTAGAATGTTTACCAGCTTAT-----CTGTAC----CCAGAGAAAA---GAAAAA--------T--A---AACCT------ACTC--C--------TGACTTCACAAAACATGG-GGTGGA-G-G-TAAAATGCAAAGCCC-GATTT--TC-TT------AAAAC-GACCGA-TT---GGTCAAATCGGTGAAAGT-G-GGGAGAGACCATTAGTCTAGTA-------------TATT-------------AATtac
gi|5 : atgtatgttcatatgatatgttctttaattgttaacaacaggatacacagttcaaCACTTGGTAATAATCCTTGTACA------CATTCAGAT-----AATAGGACTTCTAAATTAGCATGTTTACCACCTAAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACTTT------CTA--C--------TGGTTTCACAAAGTACGCTGACGGG-ATGTTCATTTGCAAAGCCC-GATTT--TT-TTAA----TCGACTG------TTT--GGTCAAATCAATAAAAGT-G-GAGAGAGGCCACTAGTCTGCTATAATTGTTTTTCCTA-T-------------AATTGCAAATAATGGTAGTGTGAAAAACATTCA--------------AAA-------------TTACAATC-TCAAACGTGTACTGTGCACGATACACAGAAAACACATATATTTCTAAACTCTTTATATATCGAAAAATATGTCC----ACTTTTTTT--TTTTATATCTAAGGTTAATTTCTtttcctatgcgaaggtccttattgatattctttgacatttaaaattat
gi|6 : ATAGTTCACATT------T-TACGGTCAATAAATGCAAAACCTCGAGCCTCGACT-A-AAGAT-A-C-CC------C-TTTTC-----AATCAATCGATACTAACAA----ATATA-----------------TTGCACGTGAAAGGTTCTGTTCTTGACAGTTTTC--AAAGTCACTTAGTGAAAATCCTTGTATATACATGTATTCAAAT-----AAAAAGACCTCTAAG-------GTCCCCCGCCCTAT-----CT-TGTGAGACC-----AG---TAGAAGG--------T-TAG-TGA-TTTGG---A-TA--CAGATAAAGTGGT------AAATATGCT----AATGTGTTAGTTTGCAAAGCCC-GATTT--TA-TTCTTAAATCGACTGACT--------GGTCAAATCAGTGAAAGT-G-GGGAGAGA---------TGCTA-------------TA-T-------------tt
gi|7 : aattattgtcaacagtaggatgcATAGTTGACATTAAATTTTGTCCTGTCGATAAATGCAAGACCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTACACGTGGAAAGTGCTGTCCTTTACAGTTTT-------TCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCT---AATTAGCATGTTTACCACCTTAT-----CTGT--------------AATTTGAAAAA--------T-CACTTCACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTCATTTGCAAAGCCC-AAGTT--TTATT------Tttgtttttcctata
gi|8 : aaattattgtcaacggcaggatgcATAGTTTGCATT------TGTCCTGTCTATGTATACAAGGCCTTGAGCCTCGATT-A-AAAAT-A---CC--------------------TCAATCGATACTGACAA----AAACATCTTAAATTACATGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAACGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAATATAGCATGTTTACCACCTTAT-----CTATAT----CC-----AAAAATGAAACA--------T-CAC-TAACCTT------CTA--C--------TGGTTTTACAAAGCATGG-GGGTG----GTTAATTTGCAAAGCCC-AATTT--TT-Ttttcttttggtttttt
gi|9 : aatttttgtcaacagtagtatgcGTTCACATT------TGTCCTGTCGATAAATGCAAGGTCTCGAGCCTCGACT-A-AAAAT-A-GGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTATGTGATGTTGCACGTGGAAAGTGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAACCCATGTACA------TATTCAAAT-----AAAAAAA---CTAATTTAGCATGTTTATTACCTTCT-----TTGTAT----TC-----AAATTTGAAAAA--------T-CAC-TAAaaaaatcaact
blockSeqs : AAATTTTG T T T A GGGCCTACTT C TCAATT G TTTT TTAAA AC T TACATG TTAAA ATGGG CCAGAGA A TAAAGTGT C T TTGATCA TA AGATAAAG T AT T T G TG TTTGGGGGGTAAATCAACTGATT G TG A C TATTTGTTTTTCCTAT GTAGTGTGAAAAACATTCAAAATT C C CACAT C A ACTAT TC
blockSeqs : TG A . . A AGGCCTACTT . C G . TT AC A . . . GAGACC T . . T TGGA . . T A T C . . TTTTTGGTTTTTTCAGTCGTA G C . C TAATTGTTTTTCCTAT ATCTAGTGAAAAACGTTCAATTA . C C C A AAACA .
blockSeqs : TG C . . A AGGCCTACTT . C G . TT AC T . . . CT T . . . TTGA . . T A T T . . ATTCTTAAATCGACTGACT G T . C TATT ATCTAATATG . C C A T ACTTT .
blockSeqs : TG G . . A AGGCCTACTT . T G . TT GT A . . . TC T . . . TTGG . . G G T A . . CTTAAAACGACCGATT G T . . TAT ATCTAGAGA . T C T C AC .
blockSeqs : TG T . . G AGACCTACC . C G . TT AC A . . . TC T . . . TTGA . . T A T C . . TTTAATCGACTGTTT G T . . TAT ATC . . . C A A .
blockSeqs : T T . . G ACATGTACG . C G . TT AC A . . . CC T . . . TT . . T A T A . . CTGACTGATCG . T . TAT
blockSeqs : T T . . A CATACT . C G . TT AT T . . . CC A . . . TT . . T G T C . .
blockSeqs : . . . . A ACCC . C . . . . . . . . TC T . . . A . . T A T A . .
blockSeqs : . . A AAT . . . . . . . . . . . . A . . . . . C
blockSeqs : . . . ACC . . . . . . T . . . . . A
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : AGGCCTACT**** C***** TT*** AC CC********* TTGA*** TATTTGTTTTTCCTAT************** ACTNT****
originalCons : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAAT-A-G-CCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTA-------------TA-T-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCC-A--AC---TTTT--TTTTATATCTAAGGTTAATTTCTA
finalCons : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAATAGGCCTACT----C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTATCC---------AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTT--TT-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTATATTTGTTTTTCCTAT--------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAAC----ATATTTCTANACTCTTCTTATATCGAAACATATGTCCACTNT----TTTT--TTTTATATCTAAGGTTAATTTCTA
Alignments
lowQualScore : 11111111 11 111 111111 111111 11111 11111 11111111111 11111111 2222222 11111111 666666666666666666666666666666 999999999999999999999999999999999999999999999999999 1111 333
lowQualScore : 33333333 2 0 0 3 3 2 22 2 222 3 333333 2 8888 88888 0 55 2 222222 11111 00000 0 33333333333 2 11111111 3 6 0000000 55 33333333 4 77 2 1 4 111111111111111111111111111111 4 77 5 5 1 222222222222222222222222222222222222222222222222222 6 1 2 4444 1 1 111 99
lowQualScore : ........ . . . . . . .. . ... . ...... . .... ..... . .. . ...... ..... ..... . ........... . ........ . . ....... .. ........ . .. . . . .............................. . .. . . . ................................................... . . . .... . . ... ..
lowQualScore : 11111111 6 1 5 6 6 6 55 1 666 6 444444 5 5555 44444 8 44 3 888888 11111 00000 7 44444444444 4 22222222 1 2 9999999 00 22222222 3 66 1 0 4 222222222222222222222222222222 3 11 7 2 7 222222222222222222222222222222222222222222222222222 7 0 5 2222 0 0 333 22
consensus : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAATAGGCCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTTT--T-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTATATTTGTTTTTCCTATAATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAACA----TATTTCTANACTCTTCTTATATCGAAACATATGTCCAC---TTTT--TTTTATATCTAAGGTTAATTTCTA
Reference ( family-914 ) : ATAGTTCACATT------TGTCCNGTCGATAAATGCAAGGCCTCGAGCCTCGACT-A-AAAATAGGCCTAC-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGTTCTGTCCTTGACAGTTTTCAAAAAGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAAATTAGCATGTTTACCACCTTAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTNATTTGCAAAGCCC-GATTTT--T-TT------TCGACTGACTGA-TCG--GGTCAAATCAATGAAAGC-G-GGGAGAGACCACTAGTCTGCTATATTTGTTTTTCCTATAATAGCAAATAATG--------------ATCTA--------------ATA-------------TAACAATC-TCGCACGTGCACCGTGCACGATACACAGAAAACA----TATTTCTANACTCTTCTTATATCGAAACATATGTCCACTNTTTTT--TTTTATATCTAAGGTTAATTTCTA
gi|1 : ATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|1 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-G-GT-AATTTACAACGCCC-GATTTT----------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGTTTGCTATATTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTAGTGAAAAACGTTCAATA-------------TAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAAAA----TATTTATATACTCTTCTTATATTGAATCATATGTCCAA-ACATTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatgggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggtttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaatataacaatctagcacgtgcaccgtgcacgatacactgaaaaaatatttatatactcttcttatattgaatcatatgtccaaacatttttttaaatctaaggttaatttctt
gi|10 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATAGTTCACATT--------------CGATAAATGCAAGGCTTCGAGCCTAAACT-A-TAAATAGACCTAC-C-CCTTTTC-----AATCAATCGATACTAACAATTTTAAAAAACTT---CTACGTGACGTTGCACGTGAAAAGTTTTGTCTTTGACAGTTTTCAAATAGTCACTTGTTAAAAATCCTTATACA------AATTAAGAT-----AAAAAGACCTCTAAATTAGCATTATTACCA--TT------------------------AAATTGGAAAAA--------TCCAC-TAGCCTt
gi|11 : ataaattattgtcaacggtaggatgtTATTTATTTTTCCTATAATAGCAAATAATG--------------ATC--------------------------------------TC-TCGCACGTGCATTGTGCACGATACACAGAAAACA----TATTTCTAAACTTTTCTTATATCGAAACATATGTCCACTATTTTTTCTTTTATATCTAAGGTTAATATCTA
gi|12 : gTTATCCA------TATTTAGATTTAAAAAAAAGATCCCTACATTGGCATGTCTACCAGTTTATATGGGCTATAT----CT-----AAAACTGAAGAATAAAGTGTT-CACTTAGCC---A---ACAA--C--------TGATTCCACAAA
gi|13 : ATAGTCCACATC------TGTGTTATGGATAAATGCAAGGTCTAGAGCCTCGA-T-ATAAAATGGGCCTACTT-C-TATTC-----AATCAATC
gi|14 : tttaataaattattgtcaacgacaagatgcG--------------ATCTA--------------G-A-------------GAAAAACCCTCGCACGTG-------CACGATATACAGAAAACA----TATTTCTAAACTCTTCTTATATCGAAACATATGTCCAC-----TT--TTTTATATCTAAGGTTAATTTC
gi|15 : TTCACAAAATATGGTGGGGG---TGTTTATTTGCAAAGCCCGGATTTT--T-TTGGGGGGTAAATCAACTGA-TT---GGTAAATTCAATGAAAGTGG-GGGAGAGGCCACTA
gi|16 : TACCACCTTAT-----CTGTAT----TC-----AAATTTAAAAAA--------T-CAC-TAACCTGGA---ACTA--C--------TGGTTTAACAAAATGTGGTGGGGGA-GTGTTCATTTGCAA
gi|17 : ATGCA-TGCCTTGAGCTTCGACT-A-AAAATAGGCCTAC-TTC-TTTTT-----AATCAAT----ACTATCAA----AAACATCTT---TTACGTGACGTTGTACGT
gi|18 : C-----AAATTTGAAAAA--------T-CAC-TAACCTTGATCAACTATAC--------TGGTTTCACAAAATATGGTGGGAAA-GTATTTATT
gi|2 : tATAGTTCACATT------TGTCCAGTCGATAAGTGTAAGGTCTCGAGCCTCAAGT-A-AA------CATAC-T-C-CTTT--------TCATTC------------------CATC-----------G--GTTGTACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAAATTCACTTGGTAGATATCCTTGTAC
gi|2 : gatgcgtcctttaataaattattttcaactataggatgcTTGAAAAA--------T-CAC-TACCC---A---ACTA--C--------TGTTTTCACAAAATATGGGGGGGGG-GT---AATTTACAACGCCC-GATTTT----------------CTGACTGA-TCG--G-TCAAATCAATGAAAAC-G-GGGAGGGACCACTGGT-TGCTATATTTGTTTTTCCTATAATAGCAAATGGTG--------------ATCTA--------------GTGAAAAACGTTCAATTAACAATC-TAGCACGTGCACCGTGCACGATACACTGAAAA-A----TATTTATATACTCTTCTTATATTGAATCATATGTCCAAACATTTT--TTTTAAATCTAAGGTTAATTTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttgaaaaatcactacccaactactgttttcacaaaatatggggggggggtaatttacaacgcccgattttctgactgatcggtcaaatcaatgaaaacggggagggaccactggttgctatatttgtttttcctataatagcaaatggtgatctagtgaaaaacgttcaattaacaatctagcacgtgcaccgtgcacgatacactgaaaaatatttatatactcttcttatattgaatcatatgtccaaacattttttttaaatctaaggttaatttct
gi|3 : gatgcgtcctttaataaattattttcaactataggatgcatagttcacatttgtccagtcgataagtgtaaggtctcgagcctcaagtaaacatactccttttcattccatcggttgtacgtgaaaagttctgttcttgacagttttcaaaaattcacttggtagatatccttgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATGGTTCACATG------T-TCACATC-----ATGCAAGGCCTCGAGCTTAGACT-A-AAAA-------AA-T-C-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTGCACGTGAAAAGAGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCTCTAAATTAGCACCTTTACCACCTTAT-----CTGTAT----TC-----ATATTTAAAAAA--------T-CAC-TAACCTTGA---ACTA--C--------TGGTTTAACAAATTGTGGTGGGGGA-GTGTTCATTTGCAAAGCCC-GATTTTGTT-TT------TTGGTTTTTTCAGTCGTAGGTCAACTCAATGAAAGT-GAGGGAGAGTCCACTATTCTGTTATAT-------------AATAGCAAATAATG--------------ATCTA--------------ATA-------------TGACACTC-TCGCACGTGCATCGTGCACGATATACAGAAAACA----TATTTTTACACTCTTCTTATATCGAAACATATGTCCAC---TTTT--TTTTATATCTAAGGTTAATTTCTA
gi|4 : AGCCTCGACTTC-AAGATACATGTAC-G-C-TTTTTCAATTAATCAATCGATACTAACAA----AACTATCTT---TTTCGTGGTGTTGCACGTGAAAATGTCTGTT-TTGGCAATGTTCATAAAGTCACCTGGTAAAAATCCATGCACA------TATTTGGAT-----AAAAAGACCTCTAAATTAGAATGTTTACCAGCTTAT-----CTGTAC----CCAGAGAAAA---GAAAAA--------T--A---AACCT------ACTC--C--------TGACTTCACAAAACATGG-GGTGGA-G-G-TAAAATGCAAAGCCC-GATTTT--C-TT------AAAAC-GACCGA-TT---GGTCAAATCGGTGAAAGT-G-GGGAGAGACCATTAGTCTAGTATA-TTAATTTTCCTATtac
gi|5 : atgtatgttcatatgatatgttctttaattgttaacaacaggatacacagttcaaCACTTGGTAATAATCCTTGTACA------CATTCAGAT-----AATAGGACTTCTAAATTAGCATGTTTACCACCTAAT-----CTGTAT----CC-----AAATTTGAAAAA--------T-CAC-TAACTTT------CTA--C--------TGGTTTCACAAAGTACGCTGACGGG-ATGTTCATTTGCAAAGCCC-GATTTT--T-TTAA----TCGACTG------TTT--GGTCAAATCAATAAAAGT-G-GAGAGAGGCCACTAGTCTGCTATAATTGTTTTTCCTATAATTGCAAATAATGGTAGTGTGAAAAACATTCA--------------AAA-------------TTACAATC-TCAAACGTGTACTGTGCACGATACACAGAAAACACATATATTTCTAAACTCTTTATATATCGAAAAATATGTCCACTTTTTTT--TTTTATATCTAAGGTTAATTTCTgcgaaggtccttattgatattctttgacatttaaaattat
gi|6 : ATAGTTCACATT------T-TACGGTCAATAAATGCAAAACCTCGAGCCTCGACT-A-AAGATA---C--C-C-C-TTTTC-----AATCAATCGATACTAACAA----ATATAT-----------------TGCACGTGAAAGGTTCTGTTCTTGACAGTTTTC--AAAGTCACTTAGTGAAAATCCTTGTATATACATGTATTCAAAT-----AAAAAGACCTCTAAG-------GTCCCCCGCCCTAT-----CT-TGTGAGACC-----AG---TAGAAGG--------T-TAG-TGA-TTTGG---A-TA--CAGATAAAGTGGT------AAATATGCT----AATGTGTTAGTTTGCAAAGCCC-GATTTT--A-TTCTTAAATCGACTGACT--------GGTCAAATCAGTGAAAGT-G-GGGAGAGA---------TGCTATATTTGTTTTTCCTATAtt
gi|7 : aattattgtcaacagtaggatgcATAGTTGACATTAAATTTTGTCCTGTCGATAAATGCAAGACCTCGAGCCTCGACT-A-AAAATAGGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTACGTGACGTTACACGTGGAAAGTGCTGTCCTTTACAGTTTT-------TCACTTGGTAAAAATCCTTGTACA------TATTCAAAT-----AAAAAGACCT---AATTAGCATGTTTACCACCTTAT-----CTGT--------------AATTTGAAAAA--------T-CACTTCACCTTGA---ACTA--C--------TGGTTTCACAAAATATGGTGGGGGA-GTGTTCATTTGCAAAGCCC-AAGTTT--TATT------T
gi|8 : aaattattgtcaacggcaggatgcATAGTTTGCATT------TGTCCTGTCTATGTATACAAGGCCTTGAGCCTCGATT-A-AAAATA--CC--------------------TCAATCGATACTGACAA----AAACATCTTAAATTACATGACGTTGCACGTGAAAAGTTCTGTTCTTGACAGTTTTCAAAACGTCACTTGGTAAAAATCCTTGTACA------TATTCAGAT-----AAAAAGACCTCTAATATAGCATGTTTACCACCTTAT-----CTATAT----CC-----AAAAATGAAACA--------T-CAC-TAACCTT------CTA--C--------TGGTTTTACAAAGCATGG-GGGTG----GTTAATTTGCAAAGCCC-AATTTT--T-Ttttcttttggtttttt
gi|9 : aatttttgtcaacagtagtatgcGTTCACATT------TGTCCTGTCGATAAATGCAAGGTCTCGAGCCTCGACT-A-AAAATAGGCCTAC-TTC-TTTTC-----AATCAATCGATACTAACAA----AAACATCTT---TTATGTGATGTTGCACGTGGAAAGTGCTGTCCTTTACAGTTTTCAAATAGTCACTTGGTAAAAACCCATGTACA------TATTCAAAT-----AAAAAAA---CTAATTTAGCATGTTTATTACCTTCT-----TTGTAT----TC-----AAATTTGAAAAA--------T-CAC-TAAaaaaatcaact