lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 1 22222222 11 1 11 111 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33333333333333333333333 111 11 1 111 1 1 22222 1 1 1 111 1 333333333 2222 1 1 88888888888888888888888888888888888888 3 222222222 22 222222222222222 888888888888888 1 333333 22222222 2222 1 1 1 22222 2 111 2222 111 3333333 111 5555555555555555555555555555555 1 222222 44444444444 1 5555555555555555555555555555 3333333333333333333333 22222222222222222222222222 2222222222 11 22222222222222 333333333 000000000000000000000000000000000000000000 11111 1 333 33 11 1111111 4444444444444444444 3333 1 222 333 111 2222 111 11 1 1111 1 111 1111 1 1111 3333333 1 1 1 1 2222 3 111 666666666 1 3333333333 1
lowQualScore : 1 9 2 66666666 99 6 11 6 11 111 6 99 6 6 1 7 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 6 444 33 0 777 0 0 7 88888 3 5 0 0 3 444 0 66 999999999 6666 9 0 7 55555555555555555555555555555555555555 3 555555555 11 6 777777777777777 8 999999999999999 3 0 222222 4 44 22222222 4 1111 0 3 0 0 77777 2 8 2 777 3 666 1111 111 1111111 777 3 2222222222222222222222222222222 0 888888 55555555555 5 5 9999 1 77 5 9999999999999999999999999999 4 6666666666666666666666 99999999999999999999999999 99 3333333333 11 555 99999999999999 5 111111111 999999999999999999999999999999999999999999 88888 3 99 777 5 66 5 99 0000000 77 5555555555555555555 4444 8 3 1 777 1 555 3 3 7 777 9 0000 000 88 8 44 0 8888 3 0 888 9999 5 8 6 2222 4 1111111 77 6 0 5 0 5 5 5 5 2 66 7777 5 5 0 9 0 66 6 444 333333333 5 8 2 4444444444 6 5
lowQualScore : . . . ........ .. . .. . .. ... . .. . . . . . .................................................................................................................................................................... ....................... . ... .. . ... . . . ..... . . . . . ... . .. ......... .... . . . ...................................... . ......... .. . ............... . ............... . . ...... . .. ........ . .... . . . . ..... . . . ... . ... .... ... ....... ... . ............................... . ...... ........... . . .... . .. . ............................ . ...................... .......................... .. .......... .. ... .............. . ......... .......................................... ..... . .. ... . .. . .. ....... .. ................... .... . . . ... . ... . . . ... . .... ... .. . .. . .... . . ... .... . . . .... . ....... .. . . . . . . . . . .. .... . . . . . .. . ... ......... . . . .......... . .
lowQualScore : 0 5 5 22222222 22 7 00 0 00 888 7 22 7 7 0 7 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77777777777777777777777 0 555 88 0 000 0 0 0 55555 2 8 0 0 2 555 0 55 888888888 2222 8 0 0 88888888888888888888888888888888888888 8 000000000 44 0 666666666666666 0 222222222222222 2 0 222222 2 00 55555555 0 2222 0 2 0 0 00000 0 5 0 555 2 888 2222 000 5555555 000 2 8888888888888888888888888888888 6 999999 00000000000 7 7 6666 4 99 0 6666666666666666666666666666 4 0000000000000000000000 88888888888888888888888888 33 4444444444 99 444 44444444444444 0 666666666 555555555555555555555555555555555555555555 22222 3 22 000 7 44 7 33 0000000 99 1111111111111111111 1111 7 3 7 777 7 777 2 2 3 222 8 3333 777 88 0 66 0 5555 2 0 000 5555 6 2 7 1111 0 4444444 11 0 0 0 8 0 0 0 0 5 99 3333 7 7 0 1 7 22 7 777 777777777 0 2 6 0000000000 7 5
consensus : NNCTCTGTGGAAA-TTGTAAA---CA---CCATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CTCTTCG--NC-G---T------------C--A-----GNTC-------CA---CAA--------CATCTGTTA-GAAACAA--CG---------------T-----------------A-GAG-TG-CA-AA-C--AC-T-------CGTGATC-A-TG-TATTGT----AGTGACCAGG--GA-AA-ATAAA----------CAAA-ATAA--TTA-GT--ATGCAA-GA-GAGAGG-T---AATTTNG-ATTA-GCAAATAAAGGAAGGG-AATCTTGGAGGGGG-T--GAACGCT-A-GTATCT-GTATAAAT-------NAGAGGTGGAATATCATANTCAGCCACTATTCAGTGGTA-ACTGGAGGTTATG---A-----TTGTCCTCCCTCTTN---ATTN-A-TACCAGG-TG--C-TATA-CGTA-TCCAATATCG-CG---T--TTTTAGATT--TAA---ANTT----TAT-TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTTA----ATATTT-T-ATTTTCAGAATTT--TATGTAAAAACGTTT-AT-GTTGTAAATG-TTCGTG---ATTTAATTTTTAATAATTCATTGTT--N-A------T-C-AATGTTTATTATTTTCC-A--TGTTTTATA--------------------------TNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATT-----N-AT-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCC------NTA----T--GTGGG-CATTTAA-----GTC--A-CAGAAT-CCAGT-AAA--TCGGA--TT-CGACTTCCA-GTAAA-GG-AA--TATTTCT--CT-A-TC--A--TG-A-GTG-GATTTCATTT-GCGTGCT-GACTTGTTTCTTTTATCA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACA-NAAAACTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCAN-A-TTTCGTTGGATTTTCGAG-ACGAT----AACACCCA---ANATAGA-TCAAGTGGT-GGATCCCGGCCT-AAC-AAGA-GTGTT--AGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGAT-AAAAA-ANAA-C-TTATTTTCCCGTTATTAAAATAAACAA--TAAG-AACACTCTTCGCTTTTTGTTACG
Reference ( gi|2 ) : ATCTCTGTGGAAAATTGTAAA---CA---TCATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACTCTTCG--AC-G---T------------C--A-----GATC-------CA---C----------CATCTGTTA-GAAACAA--CA---------------T-----------------A-GAG-TG-CA-AAGC--AC-T-------CGTGATC-A-TG-TATTGT----AGTGACCAGG--AATAA-GTAAA----------CAAA-ATAA--TTA-GT--ATGCAA-GA-GAGAGG-T---AATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GG--T--GAACGCTTA-GTATCT-GTAAAAAT-------CA-------------ATAATCG--C------CAGTGGTACACTGGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAGT-TATAGCGTAATCTAATATCG-CG---T--TTTCAAATT--TAA---AATT----TAT-TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTTA----ATATTT-T-ATTTTCAGAA-TT--TATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C-A------T-C-AATGTTTATTATTTTCC-A--TGTTTTATA--------------------------TAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATT-----G-AT-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCG------GTA----T--GTGGGGCATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGGGATTT-CGACTTCC--GTAAA-G--AA--TATTTCT--CT-A-TC--A--TG-A-G-A-GATTTCATTTTGCGTTCT-GACTTGTGTCTTTTATCACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACA-GAAAACTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-A-TTTCGTTGGAGTTTCGAG-ACAAT----AACACCCA---AGATAGA-TCAAGCGGT-G-ATCCCGGCCT-AAC-ACGA-GCGTT--AGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAAAAA-AGAAGC-CTATTTCCCCGTGATTCGAATTAACAATCTAAGTAAAAGTCTTTATTTTTTGTTACG
gi|3 : CTCTGTGGAA--TTGTAAA---CA---TCATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CTCTTCT--AC-G---TA-----------C--AA----GATT-------CA---AAA--------CATCTGTTAAGAAACAA--CA---------------T-----------------AAGAG-TG-CA-AAGC--AC-T--------GTGATC-AATG-TATTGT----AGTGACCAGG--GA-AA-GTAAA----------CAAA--TAA--TTAAGT--ATGCAA-GAAGAGAGGGT---AATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA--GGG-T--GAACGCT-A-GTATCT-GTATAAAT-------AAGAGGTGGAATATCATAATCAGCC------CAGTGGTA-ACTGGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGT-ATCTAATATCG-CGTAAT--TTCCAAATT--T-----AATT----TAT-TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTTA----ATATTT-T-ATTTTCAGAATTT--TATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTT--CAA------T-C-AATGTTTATTA--TTCCAA--TGTTTTATA--------------------------T-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATT-----G-AT-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCG------TTACC--T--GTGGGGCATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGGA--TT-CGACTTCTCAGTAAAGG--AA--T-TTTCT--CTAA-TC--A--TG-A-G-AGGATTTCA-TTTGCGTTCT-GACTTGT-TC-TTTATCCCACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-G-AAACTG--AGTCAATTAGGGC
gi|4 : tatcataagaaaattgCTTTGTG--AAATTTTAAA---AAC--TCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CTCTTCG--CC-G---T---------------A-----ACTC-------CAGA-CAAAGTAATAACAT-TGTTA-GAAACAA-------------------------------------------TG-C-------------------CGTAATA-G-T--CACTCA----AATGAC-AGG--GA-AA-ATAAA----------CTAA-A-AA--TTA-GT--ATGCAA-GA-GGGAGG-T---AATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGG--CTGGAACGCT-A-GTTTCT-GTATAAATGAGAGTGCA-------------ATATTCA--CACTATTCAGTGGTAAACTGGAAAGTGTG---AAGTAATTGCCGCCTCTCATC----TTA-A----CAGG-T-------TA-CGTA-TCCAATATCG-CG---TCTTTTTAA--T--TAACCCATTT----TAT-TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-TA----ATATTT-TCATTTTCAGAATTT--TATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTTA-G-A------T-C-AATGTTTA-TATTTTCCAA--TGTTTTATA--------------------------C-ACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTT-----A-AC-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCC-------CTACC--T--GTGGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCATTCGCAACTTCCA-GTAAG-G--AA--TATTTCT--CT-C-TC--A---G-ATG-G-CAATTCA-TTTGCGTTC
gi|11 : taaagaaaattggCTCTGCGGAAA-TTGTAAA---CA---CCATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CTCTTGG--CT-G---T---------------A-----ATTC-------CAAGGCAAAGTATTAACATCTGTGA-TAAACAA--TGTACTTGTATCTAGATT-----------------A-GAG-TG-TA-GA-C--AC-T-------CATGATC-A-TG-TATTGT----AGTGACCAGG--GA-AA-ATAAA----------CA
gi|22 : ataaagaaaattgCTCTGTGGAAA-TTGTAAA---CT---CCACTCGG--CTGTC-t
gi|1 : tatcataaagaaaagtaTTTGTGAATAATT-TGAATGCCAAATCCATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGACCTTCTTCG--GCCG---TAATTCCAAAAGAC--AATAAAGGTC-------AA---TAA--------CACCTGTTA-GAAACAA---A---------------TGTCTAGTGTCTTAGATGA-GAG-TG-CAGAATC--ACCT-------CACAATTGA-TGATATTGTTTAGAGGAACCAGG--AGTAACGAAAAAATAACAATGCGAATATAAATTTA-GTCTATGCAACAA-GATATA-TTATAATTCTGCATTGTGCAAATTAAGGAAGGATAA--TTGGA--GGGTT--GAACGCTAAGGTATCTAGTA
gi|7 : ttcattttaatagataaattgctttgCTCTGGAAA-TTGTAAAA--CA---TCATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AA-GATGT-TTGAC-CTTTTCGCAGC-GCACT------------CCAA-----GA-CAAAGTAATA---A----------CATC-GTTA-GAAACAATGCG---------------T-----------------A-GAG-T--CA-A-----------------GT--TC-------------------GACCGGGGAAATA----AAA----------C-AA-ATAA--TTA-GT---TACAA-GA-G-GAGGTT---AA--TAG-ATTA-GCAAAT-ACGGTAAGG-AATCTTGGAGGGG--T--GAATGC-TA-GT-TCT-GTATAAAT-------ttttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|5 : catttaaagaaaattgctaG-TGTT--ACG-ATAT-CTAACACTCTT-GTTAG-G---C------------C--G-----GATC-------CA---C----------CACTTGTgagaggcaatatttgaacactattcccagctgcgtaaaactgga
gi|18 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaaataaagagtggttaactggaagtgttcatgaactgtttacctattcattctatacaggacggggataagaacagggccactccccgtaccttgtcaacagaatccagtaaatcggattcgacttccagtaaaggaatagtctcttcataagtggatttcatttgcgtactgcttgtttttgttatccctaaaacaaatcttcatcaaactatttttgacacacaactgaagtcattaggtctgataataagaatcagcacgatgagtttccacaatttcgttggattttcgagacaataacacccaacat----------CATTTGTCA-GAAACAA--TG---------------T-----------------A-AAGACGTCA-AGGTTAAT-TAAGAGTGCAGGATC-A-CG-TGAGGT----AGTGACCAGG--GA-AG-ATATA----------CAAA-ctccaagccaagggagtgcgagatagaaaacacaatattttcccggtattaaaatcatcaaaataaaccagaagaacat
gi|9 : attccaagacagaagtaataaAGTGGTA-ACTGGAGGTTATG---A-----TTGT-CTCCCTCTTA---ATTG-A-TA-CAGG-t
gi|8 : tcaatgtttattaattccatgttttatattgttgtgataatatttatcagactgtgataataaagGTA-ACTGGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCTA-TCCAGTATCG-CG---TA-TTTTAGACT--TAA---ATTT----TAT-TTGATTTAG-AGGGTT-CAGTTC---ATATTTT-ATTTT---ACAGAATTTTCAATTA----ATATTT-T-ATTTT----A-TT----TGTAAAGA------------ATAA-----TTGT----ATTCAATATTT-AT-ATTCATTGTTAAA-A------T-C-AATGTTTATTATTTT-C-A--TGTTTT-TA--------------------------TTATAATAAAGAG-AG--------G----------T--accactccccttaccagtggggcgtaacagaatccagtgaaatcggattcgatttccagtaaaggaagatacctcataagtggatttcatgcgtgctcgactttttgttttatcagtcctaatacaaatcttcatcaaactattttaatgacacagac
gi|1 : ctgtatttaaatgagaggttacagaccaaggttttagtggttacaatTTAGA---A-----CTGTT-TGCCTCTTTGACATTT-ACTACAAGG-TGC-C-TATACCAT----TAA-ACTGTCG---T--TTTATGATTACTAA---AATTATGTCATATTGAT-CAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----A-TTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCCC----TTCAT-GTT--T-AAAGATGTGC-AATGTTTATTATT--CC-AGGTATGTTA-A--------------------------TTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATT-----T-CTAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|17 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagacc---ATTTAATTTT-AATA-TTCATTGTT--A-AA-----T-C-AATTTTTATTA-TTTCC-A--TGTTTTA-A--------------------------TTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---ttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|16 : ATTCATTGTT--A-A------C-CCAATGTTTATTATTT-CC-A--TGCTTTATA--------------------------TA-TAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATT-----T-AA-ACAG-G-ACGG--------------G-AATAAGAACActtaggaactgtttgcctattc
gi|9 : t------T-C-AATGTTTATTAATT-CC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATT-----G-AT-ACA--G-G----------------------------AC--------CACTCCCC------TTA----CCAGTGGGGC-----------GTA--A-CAGAATCC-AGTGAAA--TCGGA--TT-CGATTTCCA-GTAAA-GG-AA--GATACCT--C--------A--TA-A-GTG-GATTTCAT---GCGTGCTCGACTTTT-TGTTTTATCA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACA-
gi|6 : --------------------------TAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTTAACAG-CT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GTGGG-CATTTGA-------------AGA-TGCGTGT-A------GTGATTC-C-ACT-------AAA-G--GA--AATGACT--CT-A-TC--A--TGCA-C-G-GATTTCATT--GCTTGCT-GGTCTGC-TCCTATATCG-ACC-TAAGCCATA-CTTCAGCAA---CTACTTTGT--TGACA-GAAATCAGAAAGTA-ATTGG---TTGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCAA-A-TTTC---GGA-TTTTGAA-ATAATATGAAATAC------AG-TAGGTTTAAGTGGT-G-GAGTCGG-CT-AACGAGGG-GTGTT--GGAAcagac
gi|5 : AATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATT-----CTAT-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCC------GTA-------------CCTT--------GTC--AACAGAATCC-AGT-AAA--TCGGA--TT-CGACTTCCA-GTAAA-GG-AA--TAGT-CT--CT---TC--A--TA-A-GTG-GATTTCATTT-GCGTACT-G-CTTGTTTTTGTTATC----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACA-CACAACTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCAC-AATTTCGTTGGATTTTCGAG-ACAAT----AACACCCA---ACATA----CAAGTGGT-G-GATCCGGCCT-AAC-AAGA-GTGTT--AG---ATATC-GTAAC-ACCT-C--CAAGCCAAGGGAGT-GCGAGATAGAAAACACAA----TATTTTCCCGGTATTAAAATCATCAA
gi|10 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcga--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCC------GTAAACCT--GTGGG-CATTTA-------------CAGA---CCAGT-AAAAATCGA---TT-CGACTTCCA-GTAAA-GGAAA--TAAACCGAGCT-AATT--AAGTG-T-G---GATTTCAAA--GCGTGCTTGACTTTTTCTTTTTATCA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAA-ACTTTCG-TGGATTTTCaataaaccagaagaacat
gi|1 : TT-CGACTTCCA-GTAAA-G--GAATTATTTCT--CTCA-TCTCA--TA-A-GTG-GATTTCATTT-GCGTACT-GACCT-TCTCTTTTATCA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACA-CAAAACTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAA-TTTCGTTGGATTTTCGAG-ACAAT----AACACTCA-----ATAGA-TCAAGTGGTGG-ATCCCGGCCT-AAC-AAAA-GGGTT--AGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAGAAA-ACA--C-TTATTTCCCCGTTATCAAAATAAACAA--TAAG-AACACTC-TCACTTTTataac
gi|14 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcga-TTTGGTTTGGATTTTGAGCACGAT----A----CCATATATATAGA----AGTGGT-G-GATCCGTCCT-ATC-A-GATGTGTTCTAGGATATATC-ATAAT-CCTC-TCAg
gi|12 : atagt-ACGAT----AACACTC-----TACAGA-TTAAGTGGT-GGATCCCGGCCT-AAC-GGAA-GTGT---AGGAT-TATC-GTAAC-ACTTCTCACATGCCAAA-------CGAGATCAAAAA-GACA---CTATTTCCCTGTTATTAAAATCAACAAAATAAACAAgtaccagcgaaatagtaacagaaaaattcc
gi|13 : -ACGAT----AACTGCCA---CAATAGA-TCAAGTGGTGG-ATCCCGGCTTAAAC-ACGA-GTGGT--AGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGATTAAAAAGAGAAAC-tcaaaaaacactgt
gi|20 : aCAAT----AACACTCA---A--TAGA-TCAAGTGGT-GGATTCCGGTCT-AAT-AAGA-GGTTT--AGGA--TATC-GTAAC-ACCTCTCACAAGCCagtaagtaaaattttttttgttacgatac
gi|15 : AAGTGGT-GGATCCCGGCCT-AAC-AAGA-G-GTT--AA-AGATATC-GTAAC-ACCTCTCACA------TGGAAA-GCGAGAT--AAAA-AGA--CATTATTTTCCAGTGATTTGAATAAACAATCCAAG-AACAGTC
gi|19 : CCTCTCACAAGCCAAGGGAGT-GCAAG-----------------TATTTTCCCGTGATTCGAATAAACAA--TAAG---AACTCTTTGTTTTTTGTTACGc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 222 22 33 11 222 11111 11111111111111111111111111111111111111111111111111111111111111111111 222222222 1 22222 11111 4444444444 11111 11 11111 1111 111 111 1111 111 222222222 33333333 11 3333333333 1 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 7777777777777777777777777777777777777777777 111111 1 111111 111 1 1111 111 1111 1 1111 11 111 22222 22 333333333 3333333333 11111
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 000 6 9999999999999999999999999999999999999 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 0 888 11 8 111 8 8 3 8 222 0 8 8 8 0 2 44 55 8 8 11 6 6 000 55555 66666666666666666666666666666666666666666666666666666666666666666666 1 555555555 5 33333 99 44444 8 8888888888 5 8 1 8 77777 99 11 88888 7777 8 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 444 0 444444444 11 8 22222222 7 44 66 0000000000 5 5 6 6 0 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 5555555555555555555555555555555555555555555 000000 1 77 7777 66 5 111111 66 888 66 0 2 5 5555 1 1 0 7 11 3333 1 1 999 7 7777 1 6 6 6 0 8 3333 0 8 8 77 6 222 6 5 66 11111 0 5 4 4 1 3 66 00 5 5 1 6 5 5 1 666666666 3 0000000000 77777 6 5 7 222
lowQualScore : . . . .. . .. . .. .. . .. . . . . ... . ..................................... . ........................................................................................ ........ . . .... . ... .. . ... . . . . ... . . . . . . .. .. . . .. . . ... ..... .................................................................... . ......... . ..... .. ..... . .......... . . . . ..... .. .. ..... .... . . . . . ... . . ... . . . .... . . ..... ... . ......... .. . ........ . .. .. .......... . . . . . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... ........................................... ...... . .. .... .. . ...... .. ... .. . . . .... . . . . .. .... . . ... . .... . . . . . . .... . . . .. . ... . . .. ..... . . . . . . .. .. . . . . . . . ......... . .......... ..... . . . ...
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 222 7 6666666666666666666666666666666666666 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 3 333 00 0 888 0 0 8 0 000 8 8 0 0 8 2 44 00 0 0 00 0 7 888 22222 33333333333333333333333333333333333333333333333333333333333333333333 4 000000000 0 66666 00 66666 0 4444444444 0 0 4 0 88888 44 00 66666 0000 0 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 444 8 888888888 88 0 11111111 3 88 55 7777777777 0 0 5 2 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 4444444444444444444444444444444444444444444 333333 4 99 8888 99 0 111111 99 111 99 4 2 0 9999 7 4 1 9 99 4444 4 4 111 1 0000 0 7 7 7 8 0 0000 8 0 0 00 7 333 7 7 99 44444 1 7 4 4 3 4 11 66 0 0 0 6 7 7 6 666666666 0 0000000000 77777 7 0 3 000
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT------------CA-----GNTCCA----AA---A-TAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACAAA-ATAA--TTA-GT--ATGCAA-GA-GAGAGG-TT--AATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGG-TG-AACGCT-A--GTATCT-GTAT---AAATG----AGAGGT--AATATCA---TAATCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTN-A-TACCAGG-TGAG-C-TATAGCGTA-TCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT----TAT-TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTTA----ATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--AA------T-C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGG-C-ATTTAACC--AGTC--A-CAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAA-TTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAAAAA-ANA-A-C-TATTTCCCCGTNATT---------CGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT------------CA-----GNTCCA-----------CAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACAAA-ATAA--TTA-GT--ATGCAA-GA-GAGAGG-T---AATTTNG-ATTA-GCAAATAAAGGAAGGG-AATCTTGGAGGGGGTG-AACGCT-A--GTATCT-GTAT---AAATN----AGAGGTGGAATATCA---TANTCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTCTTN---ATTN-A-TACCAGG-TG---C-TATA-CGTA-TCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT----TAT-TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTTA----ATATTT-T-ATTTTCAGAATT-TTATGTAAAAACGTTT-AT-GTTGTAAATG-TTCGTG---ATTTAATTTTTAATAATTCATTGTT--NA------T-C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGG-C-ATTTA-----AGTC--A-CAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATTTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACANAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCA-NA-TTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAAAAA-ANA-A-CTTATTTTCCCGTTATT---------AAAATAAACAA--T--AAG-AACACTCTTCGCTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGG--CCGTAATTCCAAAAGACAATAAAGGTCAA-----------TAACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTTA-GTCTATGCAACAA-GATATA-TTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGT-TG-AACGCT-AAGGTATCTAGTATTTTAAATTGTTAAGAG----AGT-TC----TAAACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGTT-TGCCTCTTTGACATTT-ACTACAAGG-TG---CCTATA-C-CA-TTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGAT-CAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCCC----TTCAT-GTT--TAAAGATGTGC-AATGTTTATTATT--CC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAA-TTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAGAAA-AC--A-CTTATTTCCCCGTTATC---------AAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGG-C-ATTTA-------------CAGA------CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCA-AACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGC--T-GT-------------A-----ATTCCAAGGCAAAGTATTAACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACAataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCAAAA-AGACA-C-TATTTCCCTGTTATT---------AAAATCAACAA--A--ATA-AACAATCt
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTAAAA-AGA-aaaaaacactgt
gi|14 : a-TTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCAgaaacagtaagtaaaattttttttgttacgatac
gi|15 : atagAAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACAT------GGAAA-GCGAGA-TAAAAAGACA----TTATTTTCCAGTGATT---------TGAATAAACAA--TCCAAG-AACAGTCgtaccagcgaaatagtaacagaaaaattcc
gi|16 : ATTCATTGTT--AA------C-CCAATGTTTATTATTT-CC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--AAA-----T-C-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : A-----------TAACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtaCCTCTCACAAGCCAAGGGAGT-GCAAG-----------------TATTTTCCCGTGATT---------CGAATAAACAA--T--AAG-A--ACTCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGA--C-GT------------CA-----GATCCA-----------C--CATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TTA-GT--ATGCAA-GA-GAGAGG-T---AATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGAGG---TG-AACGCTTA--GTATCT-GTAA---AAATC----A-------------A---TAATC-G-CCA-----------G-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-T-TATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT----TAT-TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTTA----ATATTT-T-ATTTTCAGAATT-T-ATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--CA------T-C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGG-C-ATTTAACC--AGTC--A-CAGA---ATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCA-CA-TTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAAAAA-AGA-AGCCTATTTCCCCGTGATT---------CGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTA--C-GTA-----------CAA----GATTCA-----------AAACATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----ACAAA--TAA--TTAAGT--ATGCAA-GAAGAGAGGGT---AATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGAGGG--TG-AACGCT-A--GTATCT-GTAT---AAATA----AGAGGTGGAATATCA---TAATCAG-CC----------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTCTT----ATTG-A-TA-CAGGTTGAGTC-TAAAGCGTA-TCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT----TAT-TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTTA----ATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-AA------T-C-AATGTTTATTA--TTCCAA--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGG-C-ATTTAACC--AGTCCAA-CAGA---AT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACAG-AAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGC--C-GT-------------A-----ACTCCAGACAAAGTAA-TAACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TTA-GT--ATGCAA-GA-GGGAGG-T---AATTTGG-ATTA-GCAA-TAAGGTAAGG--AATCTTGGAAGGGCTGGAACGCT-A--GTTTCT-GTAT---AAATG----AGAG-TGCAATAT--------TCA---CA--CTATT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTCATC----TTA-A----CAGG-T--------TA-CGTA-TCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT----TAT-TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-TA----ATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTTA-GA------T-C-AATGTTTA-TATTTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGG-CAATTTAACCACAGTCA-A-CAGA---AT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA--------------C-CTT--------GTC--AACAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-----CCCTAAAACAAATCTTCATC-A-AACTATTTT----TGACACACAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAA-TTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAGAAA-ACA-C-AATATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGG-C-ATTTG-----A--------AGATGCGT-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AA-TTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCAGC-G-------------CA------CTCCAAGACAAAGTAATAACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TTA-GT---TACAA-GA-G-GAGG-TT--AAT--AG-ATTA-GCAAATACGGTAAGG--AATCTTGGAGGGG-TG-AATGCT-A--GT-TCT-GTAT---AAATG----AGAGGC--AATAT--------TTGA-ACA--CTATTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTATTT-AAATG----AGAGGTTACAGACCAAGGT-TTTAG-TGG--TTA----CAA-TG--T----------A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---C-C------TA-TCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT----TAT-TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATTA----ATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAAA------T-C-AATGTTTATTATTTT-C-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : ------T-C-AATGTTTATTAATT-CC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGGGC------------GTA--A-CAGA---AT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 222222 999999999999999999999999999999999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 1111 1 11 11 111111 1111 3333333333333333333333333333333333333333333333333333333333333333333333 222222222 11 222222 1111 11 333333333 11111 11 11111 1111 111 111 1111 111 111111111 22222222 11 222222222222 1 1 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 444444444444444444444444444444444444444444 1 111 111 1 11 111 1111 1111 111 22222 22 2222222 222222222 11111 1
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 000 6 666666 333333333333333333333333333333333 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 7 6 0 11 8 111 999 3 2222 0 8 8 8 0 1 8 0 3 11 8 11 6 6 666666 4444 1111111111111111111111111111111111111111111111111111111111111111111111 1 555555555 11 111111 7777 00 8 999999999 5 8 1 8 77777 99 11 88888 8 7777 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 444 0 999999999 11 8 99999999 7 99 66 666666666666 8 0 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 999999999999999999999999999999999999999999 1 5 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 77 5 5 1 9999999 0 222222222 3 77 33333 1 3 9 11
lowQualScore : . . . .. . .. . .. .. . .. . . . . ... . ...... ................................. . ........................................................................................ ........ . . .... . . . .. . ... ... . .... . . . . . . . . . .. . .. . . ...... .... ...................................................................... . ......... .. ...... .... .. . ......... . . . . ..... .. .. ..... . .... . . . . ... . . ... . . . .... . . ..... ... . ......... .. . ........ . .. .. ............ . . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... .......................................... . . . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . .. . . . ....... . ......... . .. ..... . . . ..
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 222 7 777777 111111111111111111111111111111111 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 3 7 8 00 0 888 222 8 6666 8 8 0 0 8 4 0 6 2 00 0 00 0 7 222222 2222 2222222222222222222222222222222222222222222222222222222222222222222222 4 000000000 44 000000 8888 00 0 666666666 0 0 4 0 88888 44 00 66666 0 0000 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 444 8 000000000 88 0 33333333 3 00 55 333333333333 8 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 666666666666666666666666666666666666666666 4 7 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 33 7 7 6 0000000 4 999999999 0 00 99999 4 3 2 55
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-CA-ANTCCAA--------A-------A---------------TAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGCT-A--GTATCT-GTA---T--AAA----TGAGAG-GC--AATATC-TAATCAG-CCA--CTA----TT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGTA-TCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---CAATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAAAAAAGA-A--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-CA-GNTCCAA--------A-------A---------------TAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGCT-A--GTATCT-GTA---T--AAA----TGAGAG-GT--AATATCATAATCAG-CCA--CTA----TT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTN-A-TACCAGG-TGAG-CTATAGCGTA-TCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---CAATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAAAAAANA-A--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGG--CCGT--A-ATTCCAA--------A-------AGACAATAAAGGTCAATAACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTT-AGTCTATGCAACA-AGATATATTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGTT--GAACGCT-AAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-TC-TAAACAGACCAAGCT-----TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGT-TTGCCTCTTTGACATTT-ACTACAAGG-TG-C-CTATACC--A-TTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCC----CTTCATGTTT--AAAGA-TGTGCAATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAGAAAACA-C--TTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGGC-ATTTA-------------CAGA---CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGC--T-GT--A-ATTCCAAGGC-----A-------AAGTAT----------TAACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACAataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCAAAAAGACA--CTATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCt
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTAAAAAGA-G--------------------------------AAACAG--T--AAGTAAAATT-----TTTTTTGTTACGaaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCAatac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TAAAAAGAC-A--TTATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCgtaccagcgaaatagtaacagaaaaattcc
gi|16 : ATTCATTGTT--A---ACC---CAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--A---AAT---CAATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : --------A-------A---------------TAACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtCCTCTCACAAGCCAAGGGAGT-GCAAG----------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGA--C-GT-CA-GATCCAC-----------------------------------CATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGT-A--ATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGAGG--T--GAACGCTTA--GTATCT-GTA---A--AAA----TCA--------------ATAATC-G-CCA---------------G-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-TTATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-T-ATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C---A-T---CAATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGGC-ATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAAAAAAGA-AGCCTATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTA--C-GTACAAGATTCAA--------A-------A------------------CATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----AC-AA-ATAA--TTAAGT--ATGCAA-GAAGAGAGGGTA--ATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA-GGGT--GAACGCT-A--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATATCATAATCAG-CC--------------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGTA-TCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-A---A-T---CAATGTTTATTA--TTCCAA--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGGC-ATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGC--C-GT--A-ACTCCAG--------ACAAAGTAA---------------TAACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TT-AGT--ATGCAA-G-AGGGAGGT-A--ATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGGCTGGAACGCT-A--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT-----TCA---CA--CTA----TT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTC------ATCT---TAACAGG-T-------TA-CGTA-TCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT-TAT----TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTT--AG--A-T---CAATGTTTA-TATTTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA-------------C-CTT--------GTC--AACAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAGAAAACACA--ATATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGGC-ATTTGA----AGAT--G-CG---T-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCAGC-G--CA--CTCCAAGACAAAGTA-------A---------------TAACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TT-AGT---TACAA-G-AG-GAGGTTA--AT--AG-ATTA-GCAAATACGGTAAGGA-A-TCTTGGAGGGGT--GAATGCT-A--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATATTTGAA------CA--CTA----TTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT---------TA--CAG---A--CCAAGGTTT--TAG-TG-GTTACAATGT--A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCTA-TCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAA---A-T---CAATGTTTATTATTTT-C-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -T---CAATGTTTATTAATT-CC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGG-------GC----GTA--A-CAGAAT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 888888888888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 11 1 1 11 11 111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999 222222222 11 222222 1111 11 333333333 11111 11 11111 1111 111 111 1111 111111111 22222222 11 222222 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 444444444444444444444444444444444444444444 1 111 111 1 11 111 1111 1111 111 22222 22 11111111 22222 222222222 11111 1
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 1 6 55 77 999999999999999999999999999999999 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 7 6 0 11 8 111 999 3 66 11 0 8 8 8 0 1 8 0 3 11 8 11 6 6 666666 4444 3 22222222222222222222222222222222222222222222222222222222222222222222222 1 555555555 11 111111 7777 00 8 999999999 888 1 8 77777 99 11 88888 8 7777 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 0 88 0 999999999 11 8 99999999 7 99 66 333333 5 888 5 55 5 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 999999999999999999999999999999999999999999 1 5 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 55555555 5 0 5 1 44444 0 222222222 3 77 33333 1 3 9 11
lowQualScore : . . . .. . .. . .. .. . .. . . . . . . .. .. ................................. . ........................................................................................ ........ . . .... . . . .. . ... ... . .. .. . . . . . . . . . .. . .. . . ...... .... . ....................................................................... . ......... .. ...... .... .. . ......... ... . . ..... .. .. ..... . .... . . . . ... . . ... . . . .... . . ..... . .. . ......... .. . ........ . .. .. ...... . ... . .. . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... .......................................... . . . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . ........ . . . . ..... . ......... . .. ..... . . . ..
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 0 7 88 77 666666666666666666666666666666666 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 5 7 8 00 0 888 222 8 44 00 8 8 0 0 8 4 0 6 2 00 0 00 0 7 222222 2222 7 22222222222222222222222222222222222222222222222222222222222222222222222 4 000000000 44 000000 4444 00 0 666666666 888 4 0 88888 44 00 66666 0 0000 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 8 88 8 000000000 88 0 33333333 3 00 55 777777 0 888 0 44 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 666666666666666666666666666666666666666666 4 7 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 11111111 0 2 0 4 66666 4 999999999 0 00 99999 4 3 2 55
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGNC-GT--AAN-TCCAA--------A-------A---------------TAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA-A--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGNC-GT-CAAN-TCCAA--------A-------A---------------TAACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAA-AAAAGA-A--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGGCCGT--AAT-TCCAA--------A-------AGACAATAAAGGTCAATAACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTT-AGTCTATGCAACA-AGATATATTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGTT--GAACGC-TAAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-T-C-TAA----ACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGT-TTGCCTCTTTGACATTT-ACTACAAGG-TG-C-CTATACC---ATTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCC----CTTCATGTTT--AAAGA-TGTGC-AATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAG-AAAACA-C--TTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGGC-ATTTA-------------CAGA---CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGCT-GT--AAT-TCCAAGGC-----A-------AAGTAT----------TAACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCA-AAAAGACA--CTATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCat
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTA-AAAAGA-G--------------------------------AAACAG--T--AAGTAAAATT-----TTTTTTGTTACGaaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCA-GTACCA--------GCGAAA-TAGTAACAGA-A--atac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TAA-AAAGAC-A--TTATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCaaattcc
gi|16 : ATTCATTGTT--A---A-C---CCAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--A---AAT---C-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : --------A-------A---------------TAACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtCCTCTCACAAGCCAAGGGAGT-GCAAG-----------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGAC-GT-CAGA-TCC-----------------------------------ACCATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGG-TA--ATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GGT--GAACGCTTA--GTATCT-GTA---A--AAA----T-------C--AA------TAA----TC-G-C-----------CAG-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-TTATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAA-T-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C---A-T---C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGGC-ATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAA-AAAAGA-AGCCTATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTAC-GTACAAGATTCAA--------A-------A------------------CATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----AC-AA-ATAA--TTAAGT--ATGCAA-GAAGAGAGGGTA--ATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA-GGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATAT-CATAA----TCAG-CC----------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGT-ATCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-A---A-T---C-AATGTTTATTA-TTCCA-A--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGGC-ATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGCC-GT--AAC-TCCAG--------ACAAAGTAA---------------TAACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TT-AGT--ATGCAA-G-AGGGAGGT-A--ATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGGCTGGAACGC-TA--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT----------TCA---CA--CTATT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTC------ATCT---TAACAGG-T-------TA-CGT-ATCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT-TAT----TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTT--AG--A-T---C-AATGTTTATAT-TTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA-------------C-CTT--------GTC--AACAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAG-AAAACACA--ATATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGGC-ATTTGA----AGAT--G-CG---T-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCA-GC-GCAC-TCCAAGACAAAGTA-------A---------------TAACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TT-AGT---TACAA-G-AG-GAGGTTA--AT--AG-ATTA-GCAAATACGGTAAGGA-A-TCTTGGAGGGGT--GAATGC-TA--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATAT-T-TGA------A---CA--CTATTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT--TACAGAC-CAAGGTTTTAG-TGG--TTA----CAA-TG--T----------A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCT-ATCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAA---A-T---C-AATGTTTATTA-TTTTC-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -T---C-AATGTTTATTA-ATTCC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGG-------GC----GTA--A-CAGAAT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 9999999999999999999999999999999999999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 11 1 1 11 11 111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999 222222222 11 222222 1111 11 333333333 11111 11 11111 1111 111 111 1111 111111111 22222222 11 222222 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 444444444444444444444444444444444444444444 1 111 111 1 11 111 1111 1111 111 22222 22 11111111 111 22222 222222222 11111 1
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 000 6 6 33 6666666666666666666666666666666666666 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 7 6 0 11 8 111 999 3 66 11 0 8 8 8 0 1 8 0 3 11 8 11 6 6 666666 4444 3 22222222222222222222222222222222222222222222222222222222222222222222222 1 555555555 11 111111 7777 00 8 999999999 888 1 8 77777 99 11 88888 8 7777 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 0 88 0 999999999 11 8 99999999 7 99 66 333333 5 888 5 55 5 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 999999999999999999999999999999999999999999 1 5 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 55555555 5 000 99999 0 222222222 3 77 33333 1 3 9 11
lowQualScore : . . . .. . .. . .. .. . .. . . . . ... . . .. ..................................... . ........................................................................................ ........ . . .... . . . .. . ... ... . .. .. . . . . . . . . . .. . .. . . ...... .... . ....................................................................... . ......... .. ...... .... .. . ......... ... . . ..... .. .. ..... . .... . . . . ... . . ... . . . .... . . ..... . .. . ......... .. . ........ . .. .. ...... . ... . .. . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... .......................................... . . . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . ........ . ... ..... . ......... . .. ..... . . . ..
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 222 7 7 22 9999999999999999999999999999999999999 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 5 7 8 00 0 888 222 8 44 00 8 8 0 0 8 4 0 6 2 00 0 00 0 7 222222 2222 7 22222222222222222222222222222222222222222222222222222222222222222222222 4 000000000 44 000000 4444 00 0 666666666 888 4 0 88888 44 00 66666 0 0000 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 8 88 8 000000000 88 0 33333333 3 00 55 777777 0 888 0 44 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 666666666666666666666666666666666666666666 4 7 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 11111111 0 666 66666 4 999999999 0 00 99999 4 3 2 55
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGACA--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AANTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA-A--CTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGG--CCGT-AATTCCAA--------A-------AGACAATAAAGGTCAAT----AACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTT-AGTCTATGCAACA-AGATATATTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGTT--GAACGC-TAAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-T-C-TAA----ACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGT-TTGCCTCTTTGACATTT-ACTACAAGG-TG-C-CTATACC---ATTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCC----CTTCATGTTT--AAAGA-TGTGC-AATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAG-AAAACA-C--TTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGGC-ATTTA-------------CAGA---CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGC--T-GT-AATTCCAAGGC-----A-------AAGTAT----------T----AACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCA-AAAAGACA--CTATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCat
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTA-AAAAGA-G--------------------------------AAACAG--T--AAGTAAAATT-----TTTTTTGTTACGaaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCA-GTACCA--------GCGAAA-TAGTAACAGA-A--atac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TA--AAAAGACA--TTATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCaaattcc
gi|16 : ATTCATTGTT--A---A-C---CCAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--A---AAT---C-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : --------A-------A---------------T----AACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtCCTCTCACAAGCCAAGGGAGT-GCAAG-----------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGA--C-GTCAGATCC---------------------------------------ACCATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGG-TA--ATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GGT--GAACGCTTA--GTATCT-GTA---A--AAA----T-------C--AA------TAA----TC-G-C-----------CAG-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-TTATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAA-T-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C---A-T---C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGGC-ATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAA-AAAAGA-AGCCTATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTA--C-GT-A----CAA--------G-------A---------------TTCAAAACATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----AC-AA-ATAA--TTAAGT--ATGCAA-GAAGAGAGGGTA--ATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA-GGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATAT-CATAA----TCAG-CC----------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGT-ATCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-A---A-T---C-AATGTTTATTA-TTCCA-A--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGGC-ATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGC--C-GT-AACTCCAG--------ACAAAGTAA---------------T----AACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TT-AGT--ATGCAA-G-AGGGAGGT-A--ATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGGCTGGAACGC-TA--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT----------TCA---CA--CTATT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTC------ATCT---TAACAGG-T-------TA-CGT-ATCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT-TAT----TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTT--AG--A-T---C-AATGTTTATAT-TTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA-------------C-CTT--------GTC--AACAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAG-AAAACACA--ATATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGGC-ATTTGA----AGAT--G-CG---T-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCAGC-GC-A-CTCCAAGACAAAGTA-------A---------------T----AACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TT-AGT---TACAA-G-AG-GAGGTTA--AT--AG-ATTA-GCAAATACGGTAAGGA-A-TCTTGGAGGGGT--GAATGC-TA--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATAT-T-TGA------A---CA--CTATTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT--TACAGAC-CAAGGTTTTAG-TGG--TTA----CAA-TG--T----------A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCT-ATCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAA---A-T---C-AATGTTTATTA-TTTTC-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -T---C-AATGTTTATTA-ATTCC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGG-------GC----GTA--A-CAGAAT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 9999999999999999999999999999999999999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 11 1 1 11 11 111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999 222222222 11 222222 1111 11 333333333 11111 11 11111 1111 111 111 1111 111111111 22222222 11 222222 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 444444444444444444444444444444444444444444 1 111 111 1 11 111 1111 1111 111 22222 22 11111111 111 111111 222222222 11111
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 000 6 6 33 6666666666666666666666666666666666666 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 7 6 0 11 8 111 999 3 66 11 0 8 8 8 0 1 8 0 3 11 8 11 6 6 666666 4444 3 22222222222222222222222222222222222222222222222222222222222222222222222 1 555555555 11 111111 7777 00 8 999999999 888 1 8 77777 99 11 88888 8 7777 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 0 88 0 999999999 11 8 99999999 7 99 66 333333 5 888 5 55 5 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 999999999999999999999999999999999999999999 1 5 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 55555555 5 000 0 111111 666666666 1 5 77777 6 3 7
lowQualScore : . . . .. . .. . .. .. . .. . . . . ... . . .. ..................................... . ........................................................................................ ........ . . .... . . . .. . ... ... . .. .. . . . . . . . . . .. . .. . . ...... .... . ....................................................................... . ......... .. ...... .... .. . ......... ... . . ..... .. .. ..... . .... . . . . ... . . ... . . . .... . . ..... . .. . ......... .. . ........ . .. .. ...... . ... . .. . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... .......................................... . . . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . ........ . ... . ...... ......... . . ..... . . .
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 222 7 7 55 9999999999999999999999999999999999999 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 5 7 8 00 0 888 222 8 44 00 8 8 0 0 8 4 0 6 2 00 0 00 0 7 222222 2222 7 22222222222222222222222222222222222222222222222222222222222222222222222 4 000000000 44 000000 4444 00 0 666666666 888 4 0 88888 44 00 66666 0 0000 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 8 88 8 000000000 88 0 33333333 3 00 55 777777 0 888 0 44 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 666666666666666666666666666666666666666666 4 7 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 11111111 0 666 1 999999 777777777 0 2 77777 7 8 3
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CAC-TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CAC-TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACANTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGG--CCGT-AATTCCAA--------A-------AGACAATAAAGGTCAAT----AACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTT-AGTCTATGCAACA-AGATATATTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGTT--GAACGC-TAAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-T-C-TAA----ACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGT-TTGCCTCTTTGACATTT-ACTACAAGG-TG-C-CTATACC---ATTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCC----CTTCATGTTT--AAAGA-TGTGC-AATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAG-AAA--A--CACTTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGGC-ATTTA-------------CAGA---CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGC--T-GT-AATTCCAAGGC-----A-------AAGTAT----------T----AACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCA-AAAAGA--CAC-TATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCat
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTA-AAAAGA--aaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCA-GTACCA--------GCGAAA-TAGTAACAGA--gaaacagtaagtaaaattttttttgttacgatac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TA--AAAAGA--CAT-TATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCaaaattcc
gi|16 : ATTCATTGTT--A---A-C---CCAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--A---AAT---C-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : --------A-------A---------------T----AACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtCCTCTCACAAGCCAAGGGAGT-GCAAG------------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGA--C-GTCAGATCC---------------------------------------ACCATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGG-TA--ATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GGT--GAACGCTTA--GTATCT-GTA---A--AAA----T-------C--AA------TAA----TC-G-C-----------CAG-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-TTATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAA-T-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C---A-T---C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGGC-ATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAA-AAAAGAAGC-C-TATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTA--C-GT-A----CAA--------G-------A---------------TTCAAAACATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----AC-AA-ATAA--TTAAGT--ATGCAA-GAAGAGAGGGTA--ATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA-GGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATAT-CATAA----TCAG-CC----------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGT-ATCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-A---A-T---C-AATGTTTATTA-TTCCA-A--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGGC-ATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGC--C-GT-AACTCCAG--------ACAAAGTAA---------------T----AACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TT-AGT--ATGCAA-G-AGGGAGGT-A--ATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGGCTGGAACGC-TA--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT----------TCA---CA--CTATT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTC------ATCT---TAACAGG-T-------TA-CGT-ATCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT-TAT----TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTT--AG--A-T---C-AATGTTTATAT-TTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA-------------C-CTT--------GTC--AACAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAG-AAAACA--CAA-TATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGGC-ATTTGA----AGAT--G-CG---T-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCAGC-GC-A-CTCCAAGACAAAGTA-------A---------------T----AACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TT-AGT---TACAA-G-AG-GAGGTTA--AT--AG-ATTA-GCAAATACGGTAAGGA-A-TCTTGGAGGGGT--GAATGC-TA--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATAT-T-TGA------A---CA--CTATTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT--TACAGAC-CAAGGTTTTAG-TGG--TTA----CAA-TG--T----------A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCT-ATCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAA---A-T---C-AATGTTTATTA-TTTTC-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -T---C-AATGTTTATTA-ATTCC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGG-------GC----GTA--A-CAGAAT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 9999999999999999999999999999999999999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 111 11 1 1 11 11 111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999 222222222 11 222222 1111 11 333333333 11111 11 11111 1111 111 111 1111 111111111 22222222 11 222222 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 444444444444444444444444444444444444444444 1 111 111 1 11 111 1111 1111 111 22222 22 11111111 111 111111 222222222 11111
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 6 000 6 6 33 6666666666666666666666666666666666666 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000000 5 2 2222 7 6 0 11 8 111 999 3 66 11 0 8 8 8 0 1 8 0 3 11 8 11 6 6 666666 4444 3 22222222222222222222222222222222222222222222222222222222222222222222222 1 555555555 11 111111 7777 00 8 999999999 888 1 8 77777 99 11 88888 8 7777 0 8 8 0 666 0 6 444 0 0 0 7777 8 8 77777 0 88 0 999999999 11 8 99999999 7 99 66 333333 5 888 5 55 5 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 999999999999999999999999999999999999999999 1 5 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 55555555 5 000 0 111111 666666666 1 5 77777 6 3 7
lowQualScore : . . . .. . .. . .. .. . .. . . . . ... . . .. ..................................... . ........................................................................................ ........ . . .... . . . .. . ... ... . .. .. . . . . . . . . . .. . .. . . ...... .... . ....................................................................... . ......... .. ...... .... .. . ......... ... . . ..... .. .. ..... . .... . . . . ... . . ... . . . .... . . ..... . .. . ......... .. . ........ . .. .. ...... . ... . .. . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... .......................................... . . . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . ........ . ... . ...... ......... . . ..... . . .
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 7 222 7 7 55 9999999999999999999999999999999999999 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77777777 7 3 1111 5 7 8 00 0 888 222 8 44 00 8 8 0 0 8 4 0 6 2 00 0 00 0 7 222222 2222 7 22222222222222222222222222222222222222222222222222222222222222222222222 4 000000000 44 000000 4444 00 0 666666666 888 4 0 88888 44 00 66666 0 0000 8 0 0 8 666 8 0 000 8 8 8 0000 0 0 00000 8 88 8 000000000 88 0 33333333 3 00 55 777777 0 888 0 44 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 666666666666666666666666666666666666666666 4 7 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 11111111 0 666 1 999999 777777777 0 2 77777 7 2 3
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CAC-TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CAC-TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCGG--CCGT-AATTCCAA--------A-------AGACAATAAAGGTCAAT----AACACCTGTTA-GAAACAAATGTCTAGTG---------------TCTTAGATGA-G-AG-TG-CAG---------AATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTT-AGTCTATGCAACA-AGATATATTATAATTCTGCATTGTGCAAATTAAGGAAGGATAAT--TGGAGGGTT--GAACGC-TAAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-T-C-TAA----ACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-A-CTCAAATGTAAAGACCTTAGA---A-----CTGT-TTGCCTCTTTGACATTT-ACTACAAGG-TG-C-CTATACC---ATTAAACTGTCG-------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTT-CAGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAAT-A--ATTGTA-----TTCATACCTATTTCATTCCC----CTTCATGTTT--AAAGA-TGTGC-AATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAG-AAA--A--CACTTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCG------TAAACCT--GT-GGGC-ATTTA-------------CAGA---CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGGC--T-GT-AATTCCAAGGC-----A-------AAGTAT----------T----AACATCTGTGA-TAAACAA--------TGTACTTGTATCTAGATT--------A-G-AG-TG-TAG---------A--CAC-T-CATGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCA-AAAAGA--CAC-TATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCat
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTA-AAAAGA--aaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCA-GTACCA--------GCGAAA-TAGTAACAGA--gaaacagtaagtaaaattttttttgttacgatac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TA--AAAAGA--CAT-TATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCaaaattcc
gi|16 : ATTCATTGTT--A---A-C---CCAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t---ATTTAATTTT-AATA-TTCATTGTT--A---AAT---C-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : --------A-------A---------------T----AACATTTGTCA-GAAACAA--------TG---------------T--------A-A-AGACGTCAAGGTTAATTAA--GAG-TGCAGGATC-A-CG-TGAGGT----AGTGACCAGGG--------A-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : attccaagacagaagtCCTCTCACAAGCCAAGGGAGT-GCAAG------------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCGA--C-GTCAGATCC---------------------------------------ACCATCTGTTA-GAAACAA--------CA---------------T--------A-G-AG-TG-CAA---------AG-CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGA--------ATAAGTAA----ACAAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGG-TA--ATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GGT--GAACGCTTA--GTATCT-GTA---A--AAA----T-------C--AA------TAA----TC-G-C-----------CAG-TG-GT----------ACA-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTG-A-TACCAGG-TGAG-TTATAGCGTAATCTAA-TATCGCG---T-TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAA-T-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTTGTA---ATTTAATTTTTAATAATTCATTGTT--C---A-T---C-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGG------TA----T--GTGGGGC-ATTTAAC--CAGTC--A-CAGAATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAA-AAAAGAAGC-C-TATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCTA--C-GT-A----CAA--------G-------A---------------TTCAAAACATCTGTTAAGAAACAA--------CA---------------T--------AAG-AG-TG-CAA---------AG-CAC-T--GTGATC-AATG-TATTGT----AGTGACCAGGG--------A-AAGTAA----AC-AA-ATAA--TTAAGT--ATGCAA-GAAGAGAGGGTA--ATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGA-GGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATAT-CATAA----TCAG-CC----------CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----TTGTCCTCCCTC-TT---ATTG-A-TA-CAGGTTGAGTCTAAAGCGT-ATCTAA-TATCGCGTAAT-TTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT-----ATATTCT--TTCT---ATAGAA-TTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AAAACATTTAAT-GTTGTAAATGTTTTGTGT--ATTTAA-TTTTAAT-ATTCATTGTTC-A---A-T---C-AATGTTTATTA-TTCCA-A--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGT------TACC--T--GTGGGGC-ATTTAAC--CAGTCCAA-CAGAAT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCGC--C-GT-AACTCCAG--------ACAAAGTAA---------------T----AACAT-TGTTA-GAAACAATGC-----CG---------------T--------A-ATAG-T-----------------CAC-T-CA---------------------AATGAC-AGGG--------A-AAATAA----ACTAA-A-AA--TT-AGT--ATGCAA-G-AGGGAGGT-A--ATTTGG-ATTA-GCAA-TAAGGTAAGGA-A-TCTTGGAAGGGCTGGAACGC-TA--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT----------TCA---CA--CTATT--CAG-TG-GT----------A-AACT---------GGAAAGTGTG---AAGTAATTGCCGCCTCTC------ATCT---TAACAGG-T-------TA-CGT-ATCCAA-TATCGCG---T-CTTTT-TAAT--TAACCCATTT-TAT----TTGATTCAGCAGAGTC-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAATCCATTT-ATCGTTGTAAATG-TTTGC----ATTTAA-TTTTAATATTCCATTGTT--AG--A-T---C-AATGTTTATAT-TTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-------TACC--T--GT-GGGCAATTTAACCACAGTCA-A-CAGAAT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCG------TA-------------C-CTT--------GTC--AACAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAG-AAAACA--CAA-TATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAAACTGTA----TA-GT-GGGC-ATTTGA----AGAT--G-CG---T-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AAG-ATGT-TTGAC-CT-TTTCGCAGC-GC-A-CTCCAAGACAAAGTA-------A---------------T----AACATC-GTTA-GAAACAATG------CG---------------T--------A-G-AG-T--CAA-------------------GT--TC-------------------GACCGGGG--------A-AA-TAA----AACAA-ATAA--TT-AGT---TACAA-G-AG-GAGGTTA--AT--AG-ATTA-GCAAATACGGTAAGGA-A-TCTTGGAGGGGT--GAATGC-TA--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATAT-T-TGA------A---CA--CTATTCCCAGCTGCGTAA--------A-A-CT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT--TACAGAC-CAAGGTTTTAG-TGG--TTA----CAA-TG--T----------A-A-CT---------GGAAGCCTTGGGAA-----CTGTT-TGCCTCTTG---ATTTTA-TAC-AGG-TG---------CCT-ATCCAG-TATCGCG---TATTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTT-CAGTTC---ATA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAAGA------------ATAATTG-T--------ATTCAATATTT-AT-ATTCATTGTTAAA---A-T---C-AATGTTTATTA-TTTTC-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -T---C-AATGTTTATTA-ATTCC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCT------TA----CCAGT-GGG-------GC----GTA--A-CAGAAT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
blockSeqs : A A T GC T . C . . . TA G A A . CAG . C AT GGCAAAGTATT A TGTACTTGTATCTAGATTAGAGTGTAGACACTCATGATCATGTATTGT . T A . A . . A A GA A GT . T . . T . A A TG T . A . TTT . A GCAATATTTGAACACTATTCCCAGCTGCGTAAAACT G AAGTAA CC TTT TTA CC T AGTCTAAAG GTA T . TAAT A . CCCAT . . C C A A . . . C TCAGA T CATTTAAT AA T TTGTGT T TA AA AAA A . C TT A . TATTGTTGTGATAATATTTATCAGACT T C GTTACAATGT TGTT TGA G . A TTGCTCG CT CT ACAGCT CG G TAGCAGCAGGACAG A TGGAGGC TTACCTGTGGGGCATTTAACCAGTCCAA A C A . GAT CA T AT AA AG AA . T C TTTT G T T CT C AC T T AAC A T TAA C A A A G T T AGA C T A GTT C C TG TATAT C A G G T TC AT G A T AGGGAGT T AGT AGCC GTATTAAAA T A TCC T A T
blockSeqs : . . . . . . . . . . . G . . . C . . GA GACAAAGTAAT . TGTAAAGACGTCAAGGTTAATTAAGAGTGCAGGATCACGTGAGGT . . A . A . . . A G A TT . G . . A . A G . . . A . A . G GTTACAGACCAAGGTTTTAGTGGTTACAATGTAACT G GGAA CC TTG GA AC . AGTTATAG GT T . TA A . AA . . . . A T . . . . TCAGA T CATTTATC AA . TTGTA T TA AT CA . . . T . . T A . GTCC TG TG A . . TGCTTG CT T A G . . . CAGGAA TACCTGTGGGCAATTTAACCACAGTCAA A . G . CA . . T TT . AA . A . TTT T C G TC . A T T AA A T TAA G . . . G G . A . . T T C . . CA C . . C T . AT . . T AGGGAGT . CA CAC . G T TCT . G T
blockSeqs : . . . . . . . . . . . G . . . A . . AC ACAAAGTAAT . CATAAGAGTGCAAAGCACTGTGATCAATGTATTGT . . G . T . . . A G G T . A . . G . . . . . . T . T . G GTGGAATATCATAATCAGCCCAGTGGTAACT A A CG TT GA C . TA GT C . T T . AT . . . . . T . . . . TCAGA T CATTTAT AA . TTGC T TA A AG . . . T . . T C . GTA T TG . . . TCTC AT G T . . . . CGGA CAAACTGTATAGTGGGCATTTGAAGATG A . . . A . . T TT . A . T . TTT T . G TT . C T T AA A T TAA C . . . G G . A . . C T C . . AG C . . G T . A . . T AGGGAGT . TA CAT . G C A . G
blockSeqs : . . . . . . . . . . . . . . . A . . C GATTCAA . CATAGAGTGCAAAGCACTCGTGATCATGTATTGT . . G . C . . . . G . T . . . . G . . . . . . . . T . G TGCAATATTCACACTATTCAGTGGTAAACT A A T . T C . . CT C . T G . . . . . . . . . . . . T . . AT . . . A A A . . . T . . T A . GTA T CA . . . TCTC AT G T . . . . GGAC GTATGTGGGGCATTTAACCAGTCA A . . . A . . T TT . C . T . TTT A . G TC . A T G A A C TA G . . . G G . G . . C . . . . AC C . . A C . G . . T AATA . AA CAA . G C T . .
blockSeqs : . . . . . . . . . . . . . . . C . . . AAT . TGCCGTAATAGTCACTCA . . A . . . . T . . CAATAATCGCCAGTGGTACACT . T A A . . . T . . T T . GTT G TG . . . TTA CT A C . . . . GGGC TTACCAGTGGGGCGTAA A . . . A . . T TG . A . C . AA G . G TG . . . T A A . GT C . . . . . . . . . . GT T . . C G . A . . A GAAA . AG . . C A G .
blockSeqs : . . . . . TGCGTAGAGTCAAGTTC . . . . C . . . T . . T G . GT C AA . . . CGC C T T . . . . GGA GTACCTTGTCAA . . . . A . . G TA . . . T . TT G . . . . . . . . . . T . . . T G . . A T . . . . A A . A
blockSeqs : . . . A . . . . . GT T TG . . . CTC C G T . . . . C . . . . G . . . . . T . A . . . A T . . . . A . . .
blockSeqs : . . GT . . . . . . . . G . . . A
blockSeqs : . GT
blockSeqCons : ** ** ** GACAAAGTAAT************************** ******** **** ** A** G** T* ** ** T***** **** CC TT**** TA** A******** GT* T**** A* ** **** *** *** **** TCAGA T* CATTTAT** AA TTGC**** TA A***** *** T* ** T************************** GT******************** T***** TCTC*** CT T****** NTACCTGTGGGGCATTTAACCAGTCAA*************** ** T** A** ** TAA* A*** T** AN*** CAN***
originalCons : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAA--------A-------A---------------T----AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGT--ATGCAA-G-AGAGAGGTTA--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTTT---ATTT-A-TACCAGG-TGAG-CTATAGCGT-ATCCAA-TATCGCG---T-TTTTA-GATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT--AATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAAAACATTT-AT-GTTGTAAATG-TTCGTA---ATTTAATTTTTAATAATTCATTGTT--A---A-T---C-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCN------TA----T--GT-GGGC-ATTTAAC--CAGTC--A-CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CAC-TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
finalCons : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCGN--C-GT-AACTCCAAGACAAAGTAAT--------------------------AACATCTGTTA-GAAACAA--------CG---------------T--------A-G-AG-TG-CAA---------A--CAC-T-CGTGATC-A-TG-TATTGT----AGTGACCAGGG--------A-AAATAA----ACNAA-ATAA--TT-AGTA--TGCAAG--AGAGAGGT-A--ATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTAT-----AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-A-CT---------GGAGGTTATG---A-----CTGTCCTCCCTCTT----ATTTA--TACCAGG-TGA--------CGT-ATCCAA-TATCGCGT----TTTTAA-ATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTT-CAGTTT---ATATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATTT-TATGTAAAAACATTTAT--GTTGTAAATG-TTTGC----ATTTAATTTTTAATAATTCATTGTTA-----A-T---C-AATGTTTATTAT-TTCC-A--TGTTTTAT--------------------------ATNATAATAAAGAG-TGGT--------------------AACTGGAAGT-----TACG-A-T-T-GTTCTC---CCTCTTAATTN-AT------ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCNTACCTGTGGGGCATTTAACCAGTCAA---------------CAGAAT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAAT--ATNTCT--CTA--TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTTTAA-TGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TAA---AATTTGTCAG-CACGATGAG-TTTCCACAATTTCGT--TGGATTTTCGAG-ACGATA--ACACCCAAN---ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGACAN---TATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111 111 1111111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111 11 11 111111 22 11 11 111111 1111 99999999999999999999999999999999999999999999999999999999 222222222 33333 111 2222222 1 66666666666 22222 222222 11 11111 1111 22 111 1111 1111 1111 111 11111 11 1111 555555555555555555555555555 3333333333333333333333 111111 1 1111111 1111111 11 22222222222222 222222222 1111 444444444444 111111 1 111 111 1 11 111 1111 1111 111 22222 22 11111111 111 11111 222222222 11111
lowQualScore : 6 6 5 77 5 99 3 99 99 6 99 6 6 6 000 6 0000 222 77 3333333333 1 5 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 00000000 5 2222 7 6 0 11 8 11 0 8 8 3 888888 0 8 8 8 0 1 11 0 3 5 11 8 11 6 6 666666 4444 3 55555555555555555555555555555555555555555555555555555555 6 666666666 1 44444 222 5 8 2222222 999 5 33333333333 5 8 8 00000 888888 8 0 11 88888 8 7777 0 8 8 0 77 8 0 0 444 0 0 0 7777 8 8 77777 0 88 0 7777 3 1 0000 8 5 444 6 66666 7 11 7777 5 5 55 5 66 555555555555555555555555555 9 4 0000000000000000000000 999999 777 0 5 5 5555555 55 66 3333333 00 4 0 66666666666666 4 222222222 6 888 2222 4 1 666666666666 000000 1 77 7777 66 5 000 11 66 888 66 0 2 5 5555 1 1 0 7 11 5 44 1 1 222 5 7 3333 4 6 6 6 2 2 8 3333 0 8 8 5 222 6 5 66 11111 0 5 4 4 2 3 66 00 5 5 1 55555555 5 000 55555 666666666 1 5 77777 6 3 7
lowQualScore : . . . .. . .. . .. .. . .. . . . ... . .... ... .. .......... . . . .......................................................................................... ........ . .... . . . .. . .. . . . . ...... . . . . . . .. . . . .. . .. . . ...... .... . ........................................................ . ......... . ..... ... . . ....... ... . ........... . . . ..... ...... . . .. ..... . .... . . . . .. . . . ... . . . .... . . ..... . .. . .... . . .... . . ... . ..... . .. .... . . .. . .. ........................... . . ...................... ...... ... . . . ....... .. .. ....... .. . . .............. . ......... . ... .... . . ............ ...... . .. .... .. . ... .. .. ... .. . . . .... . . . . .. . .. . . ... . . .... . . . . . . . .... . . . . ... . . .. ..... . . . . . . .. .. . . . ........ . ... ..... ......... . . ..... . . .
lowQualScore : 7 7 7 99 7 22 3 22 22 7 22 7 7 7 222 7 0000 999 99 1111111111 6 7 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77777777 7 1111 5 7 8 00 0 00 8 0 0 8 222222 8 8 0 0 8 4 66 8 2 0 00 0 00 0 7 222222 2222 7 88888888888888888888888888888888888888888888888888888888 7 777777777 4 00000 222 0 0 0000000 444 0 66666666666 0 0 0 00000 888888 0 8 00 66666 0 0000 8 0 0 8 00 0 8 8 000 8 8 8 0000 0 0 00000 8 88 8 0000 2 0 6666 0 6 000 7 77777 3 55 1111 0 0 44 0 99 111111111111111111111111111 7 0 5555555555555555555555 111111 222 0 0 0 5555555 88 00 6666666 66 4 1 11111111111111 4 888888888 6 666 1111 3 4 444444444444 333333 4 99 8888 99 0 111 44 99 111 99 4 2 0 9999 7 4 1 9 99 7 11 4 4 111 0 1 6666 3 7 7 7 5 5 0 0000 8 0 0 2 333 7 7 99 44444 1 7 4 4 7 4 11 66 0 0 0 11111111 0 666 77777 777777777 0 2 77777 7 2 3
consensus : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCG--NC-GT-AATTCCAA--GA--CA-A----AGT-AATAACATCTGTTA-GAAAC-AA---CG---------------T---------------A-G-AG-TG-CA---------AA--CA-CT-CGTGATC-A-TG-TATTGT----AGTGACCAGG--------GA-AAATAA----ACNAA-ATAA--TTA-G--TATGCAA-GA-GAGA---GG-TAATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-ACT---------GGAGGTTATG-----ACTGTCCTGCCTC-TT----A--TTTA-TACCAGGT-GAGT---A--CGT-AT-CCAATA-----TCGCG--TA--TTTTA-AATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTTC-AGTTTA-A-TATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAA----AACATTT-AT-GTT-GTAAATGTT---TGT-AT-----TTAATTTTTAATAATTCATTGTT--A-A-TC-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCNTA--CCTGTG----GGGCATTTAAC--CAGT-CAACAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CACTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
Reference ( family-904 ) : NNCTCTGTGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGCT--AAGGATGT-TTGAC-CT-CTTCG--NC-GT-AACTCCAA--GA--CA-A----AGT-AATAACATCTGTTA-GAAAC-AA---CG---------------T---------------A-G-AG-TG-CA---------AA--CA-CT-CGTGATC-A-TG-TATTGT----AGTGACCAGG--------GA-AAATAA----ACNAA-ATAA--TTA-G--TATGCAA-GA-GAGA---GG-TAATTTNG-ATTA-GCAAATAAGGGAAGGA-AATCTTGGAGGGGT--GAACGC-TA--GTATCT-GTA---T--AAA----TGAGAG-GC--AATAT-C-TAA----TCAG-CCA--CTATT--CAG-TG-GT----------A-ACT---------GGAGGTTATG-----ACTGTCCTCCCTC-TT----A--TTTA-TACCAGGT-GA--------CGT-AT-CCAATA-----TCGCG--T---TTTTA-AATT--TAA---ANTT-TAT----TTGATTCAG-AGGGTTC-AGTTT--A-TATTTTTATTTT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAATT-TTATGTAAA----AACATTT-AT-GTT-GTAAATGTT---TGC-AT-----TTAATTTTTAATAATTCATTGTT--A-A-TC-AATGTTTATTA-TTTCC-A--TGTTTTA--------------------------TATNATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TACG-A-T-T-GTT--CTC-CCTCTTAATTN-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCCNTA--CCTGTG----GGGCATTTAAC--CAGT-CAACAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-ATNTCT--CT-A-TC--ATGAGTGG-ATTTCA-TTTGCGTGCT-GACTTGTTTCTTTTAT-CA-GCCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACACAAAA-CTG-AAGTC-ATTAGGGTCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACGATA--ACACCCA---ANATAGATCAAGTGGTGGATCCCGGCCT-AAC-AGGAGTGT--TAGGA-ATATC-GTAAC-ACCTCTCACANGCCAAGGGAGT-GCGAGA-TAG-AAAAGA--CANTATTTCCCCG---------TNATTCGAATAAACAA--T--AAG-AACAGTCTTTATTTTTTGTTACG
gi|1 : C-CATTCT---CTCTC-GTGCCGTATTCTAAAAATTTAGTCGTT--AAGGATGT-TTGAC-CTTCTTCG--GCCGT-AATTCCAAAAGA--CA-ATAAAGGTCAATAACACCTGTTA-GAAACAAA---TG---------------TCTAGTGTCTTAGATGA-G-AG-TG-CA---------GAATCACCT-CACAATTGA-TGATATTGTTTAGAGGAACCAGGAGTAACGAAA-AAATAACAATGCGAATATAAATTTA-GTCTATGCAACAA-GATATATTA-TAATTCTGCATTGTGCAAATTAAGGAAGGATAA--TTGGAGGGTT--GAACGC-TAAGGTATCTAGTATTTT--AAATTGTTAAGAG-----AGT-T-C-TAA----ACAGACCAAGCT-TT--TAG-TG-GTTTACATATCAA-ACTCAAATGTAAAGACCTTAGA-----ACTGT-TTGCCTC-TTTGACA--TTTACTACAAGGT-G---------CCT-ATACCATTAAACTGTCG--------TTTTATGATTACTAA---AATTATGTCATATTGA-TCAT-AAGGTTC-AGTTTTCATTATTTTTATTTTTACATGTAATTTTT--TTACCAAATACTGAT-ATTT-----ATTGTTATTCAAAAGGGAATAATT-GT-ATTCATACCTATT---T-C-ATTCCCCTTCATGTTTAAAGA-----TGT-------GC-AATGTTTATTA--TTCC-AGGTATGTTA---------------------------ATTATAATAAAGAG-TG--------GTTACGAATGTT--AACTGGAAGCCT---TAGA-A-CAT-GTT--GCC-TCT-TTGATTT-C-----TAACA--G---GG--------------G-AATAAGAACTAGG--C---CACT
gi|1 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatG-A--TTCG--ACTTC-CAGTAAAGGAA-TTATTTCT--CTCA-TCTCATAAGTGG-ATTTCA-TTTGCGTACT-GACCT-TCTCTTTTAT-CA-GCCCTAAAACAAATCTTAATCAA-A-CTATTTT--AATGACACAAAA-CTG-AAGTC-ATTA-GGTCTGATAA-TA--ATAATTTGTCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACTCA-----ATAGATCAAGTGGTGGATCCCGGCCT-AAC-AAAAGGGT--TAGG--ATATC-GTAAC-ACCTCTCACATGCCAAAGGAGT-GCGAGA-TAG-AAAACA--C-TTATTTCCCCG---------TTATCAAAATAAACAA--T--AAG-AACACTC-TCACTTTTttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggcgattcgacttccagtaaaggaattatttctctcatctcataagtggatttcatttgcgtactgaccttctcttttatcagccctaaaacaaatcttaatcaaactattttaatgacacaaaactgaagtcattaggtctgataataataatttgtcagcacgatgagtttccacaatttcgttggattttcgagacaataacactcaatagatcaagtggtggatcccggcctaacaaaagggttaggatatcgtaacacctctcacatgccaaaggagtgcgagatagaaaacacttatttccccgttatcaaaataaacaataagaacactctcacttttg
gi|10 : ttcattttaatagataaattgctttgtttgtgaataatttgaatgccaaatccattctctctcgtgccgtattctaaaaatttagtcgttaaggatgtttgaccttcttcggccgtaattccaaaagacaataaaggtcaataacacctgttagaaacaaatgtctagtgtcttagatgagagtgcagaatcacctcacaattgatgatattgtttagaggaaccaggagtaacgaaaaaataacaatgcgaatataaatttagtctatgcaacaagatatattataattctgcattgtgcaaattaaggaaggataattggagggttgaacgctaaggtatctagtattttaaattgttaagagagttctaaacagaccaagcttttagtggtttacatatcaaactcaaatgtaaagaccttagaactgtttgcctctttgacatttactacaaggtgcctataccattaaactgtcgttttatgattactaaaattatgtcatattgatcataaggttcagttttcattatttttatttttacatgtaatttttttaccaaatactgatatttattgttattcaaaagggaataattgtattcatacctatttcattccccttcatgtttaaagatgtgcaatgtttattattccaggtatgttaattataataaagagtggttacgaatgttaactggaagccttagaacatgttgcctctttgatttctaacaggggaataagaactaggccactttgctaaatttctacgttaccaatgtcggacttggtcccgctcctcccttcttaactcttagttattagagactggc--G-ACGG--------------G-GATAAGAACA-GG--A---CACTCCCCGTAAACCTGTG----GG-CATTTA------------CAGA------CCAGT-AAAAATCG--A--TTCG--ACTTC-CAGTAAAGGAAAT-AAACCGAGCT-AATT--AAGTGTGG-ATTTCA-AA-GCGTGCTTGACTTTTTCTTTTTAT-CA-GCCCTAAAACAA--TTTCA--AACAACCTTTTT-TA-TGACACAAAAACTG-AAGTC-ATTAGGTTCTGATAA-TAAGA-AATTTGCCAG-TACGATGAGTTTTCCAAACTTTCG---TGGATTTTCg
gi|11 : CTCTGCGGAAA-TTGTAAA-CAC-CATTCGG--CTCTC-GT--TC-GTT--AAAAAT--AG-AGTT--AAGGATGT-TTTTC-CT-CTTGG--CT-GT-AATTCCAA--GG--CA-A----AGT-ATTAACATCTGTGA-TAAAC-AA---TGTACTTGTATCTAGATT---------------A-G-AG-TG-TA---------GA--CA-CT-CATGATC-A-TG-TATTGT----AGTGACCAGG--------GA-AAATAA----ACataac
gi|12 : ataaagaaaattg-ACGATA--ACACTC-----TACAGATTAAGTGGTGGATCCCGGCCT-AAC-GGAAGTG---TAGGA-TTATC-GTAAC-ACTTCTCACATGCCAA-------ACGAGA-TCA-AAAAGA--CACTATTTCCCTG---------TTATTAAAATCAACAA--A--ATA-AACAATCat
gi|13 : -ACGATA--ACTGCCA---CAATAGATCAAGTGGTGGATCCCGGCTTAAAC-ACGAGTGG--TAGG---TATCGGTAACAACCTCTCACATGC------AATAGCGAGA-TTA-AAAAGA--aaaaaacactgt
gi|14 : aATAGTTTTGGTTTGGATTTT-GAGCACGATA------CCATATATATAGA---AGTGGTGGAT-CCGTCCT-ATC-AGATGTGTTCTAGGATATATC-ATAAT--CCTCTCA-GTACCA--------GCGAAA-TAGTAACAGA--gaaacagtaagtaaaattttttttgttacgatac
gi|15 : AAGTGGTGGATCCCGGCCT-AAC-AAGAG-GT--TAAAG-ATATC-GTAAC-ACCTCTCACATG------GAAA-GCGAGA-TA--AAAAGA--CATTATTTTCCAG---------TGATTTGAATAAACAA--TCCAAG-AACAGTCaaaattcc
gi|16 : ATTCATTGTT--A-A-CCCAATGTTTATTA-TTTCC-A--TGCTTTA--------------------------TAT-ATAATAAAGAG-TG--------G----------TA-AACTGGATG------TATG-AGT-T-ATTG-CTTGTCTC-TAATTT-A-----A-ACAG-G-ACGG--------------G-AATAAGAACAc
gi|17 : t-AT-----TTAATTTT-AATA-TTCATTGTT--A-AATC-AATTTTTATTA-TTTCC-A--TGTTTTA---------------------------ATTATTTTAAAGAG-TGGTTACAATG----------T--AACTGGGAG--T---
gi|18 : ATTCCAA--GA--CAGA----AGT-AATAACATTTGTCA-GAAAC-AA---TG---------------T---------------A-A-AGACGTCAAGGTTAATTAA--GA-GTGCAGGATC-A-CG-TGAGGT----AGTGACCAGG--------GA-AGATAT----ACAAA-cttaggaactgtttgcctattc
gi|19 : CCTCTCACAAGCCAAGGGAGT-GCAAG-----------------TATTTTCCCG---------TGATTCGAATAAACAA--T--AAG-AAC--TCTTTGTTTTTTGTTACGt
gi|2 : CTCTGTGGAAAATTGTAAA-CAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CGTT--AAGGATGT-TTGACACT-CTTCG--AC-GTCAGATCCA-------C----------------CATCTGTTA-GAAAC-AA---CA---------------T---------------A-G-AG-TG-CA---------AAG-CA-CT-CGTGATC-A-TG-TATTGT----AGTGACCAGG--------AATAAGTAA----ACAAA-ATAA--TTA-G--TATGCAA-GA-GAGA---GG-TAATTTTG-ATTA-GCAAATAATGGAAGGA-AATCTTGGA--GGT--GAACGCTTA--GTATCT-GTA---A--AAA----T-------C--AA------TAA----TC-G-C-----------CAG-TG-GT----------ACACT---------GGAGGTTATG-----ACTGTCCTCCCTCTTT----A--TTGA-TACCAGGT-GAGTTATAG-CGTAAT-CTAATA-----TCGCG--T---TTTCA-AATT--TAA---AATT-TAT----TTGATTCAG-AGGGTTC-AGTTTA-A-TATTCTAATTCT---ATAGAATTTTCAGTT----AATATTT-T-ATTTTCAGAA-T-TTATGTAAA----AACATTT-AT-GTT-GTAAATGTT---TGTAAT-----TTAATTTTTAATAATTCATTGTT--C-A-TC-AATGTTTATTATTTTCC-A--TGTTTTA--------------------------TATAATAATAAAGAG-TG--------G----------T--AACTGGAAG--T---TATG-A-T-T-GTT--CTC-CCTCTTAATTG-A-----T-ACA--G-ACGG--------------G-AATAAGAACACGG--A---CACTCCCGGTA----TGTG----GGGCATTTAAC--CAGT-C-ACAGA---ATCCCAGT-AAA--TCGG-GATTTCG--ACTTC-C-GTAAA-GAA-T-ATTTCT--CT-A-TC--ATGAG-AG-ATTTCATTTTGCGTTCT-GACTTGTGTCTTTTAT-CACACCCTAAAACAAATCTTCATCAA-AACTATTTT-TAATGACAGAAAA-CTG-AAGTC-ATTAGGGCCTGATAA-TA--A-AATTTGTCAG-CACGATGAG-TATCCAC-ATTTCG--TTGGAGTTTCGAG-ACAATA--ACACCCA---AGATAGATCAAGCGGT-GATCCCGGCCT-AAC-ACGAGCGT--TAGGATATATC-GTAAC-ACCT-TCACAAGCCAAGGGAGT-GCGAGATTAA-AAAAGAAGC-CTATTTCCCCG---------TGATTCGAATTAACAATCT--AAGTAAAAGTCTTTATTTTTTGTTACGa
gi|20 : atCAATA--ACACTCA---A--TAGATCAAGTGGTGGATTCCGGTCT-AAT-AAGAGGTT--TAGG--ATATC-GTAAC-ACCTCTCACAAGCC
gi|22 : CTCTGTGGAAA-TTGTAAA-CTC-CACTCGG--CTGTC-
gi|3 : tatcataaagaaaagtaCTCTGTGGAA--TTGTAAA-CAT-CATTCGGGCTTCTC-GT--TGCATT--AAAAAT---G-CGCTTAAAGGATGT-TTGAC-CT-CTTCT--AC-GT-A----CAA--GATTCA-A----A-------ACATCTGTTAAGAAAC-AA---CA---------------T---------------AAG-AG-TG-CA---------AAG-CA-CT--GTGATC-AATG-TATTGT----AGTGACCAGG--------GA-AAGTAA----AC-AA-ATAA--TTAAG--TATGCAA-GAAGAGA---GGGTAATTT-G-ATTA-GCAAATAAAGGAAAGG-AATCTTGGAGGG-T--GAACGC-TA--GTATCT-GTA---T--AAA----TAAGAG-GTGGAATAT-CATAA----TCAG-CC----------CAG-TG-GT----------A-ACT---------GGAGGTTATG-----ATTGTCCTCCCTC-TT----A--TTGA-TAC-AGGTTGAGTCTAAAGCGT-AT-CTAATA-----TCGCG--TAATTTCCA-AATT--TAA-----TT-TAT----TTGATTCAG-AGGGTTCCAGT----A-TATTCTT--TCT---ATAGAATTT-CAGTT----AATATTT-T-ATTTTCAGAATT-TTATGT-AA----AACATTTAAT-GTT-GTAAATGTTTTGTGT-AT-----TTAA-TTTTAAT-ATTCATTGTTC-A-A-TC-AATGTTTATTA-TTCCA-A--TGTTTTA--------------------------TAT-ATAATAA--AG-TG--------G----------T--AACTG--AG--G---TATGAA-T-T-G-T--CTC-CCTCTTAATTG-A-----T-ACACGG-ACCG--------------G-AATAAGAAAATGG--AGGCCACTCCCGTTA--CCTGTG----GGGCATTTAAC--CAGTCCAACAGA---AT-CCAGTAAAA--TCGG-A--TTCG--ACTTCTCAGTAAAGGAA-T--TTTCT--CTAA-TC--ATGAGAGG-ATTTCA-TTTGCGTTCT-GACTTGTT--CTTTATCCC-ACCCT-AAACAAATCTTCATC-A-AACTA-TTT-TAATGACA-GAAA-CTG--AGTCAATTAGGG
gi|4 : tatcataagaaaattgCTTTGTG-AAA-TTTTAAA-AACTCCTTCGG--C-CTCTGT--TG-ATT--AAAATA--AG-CGCT--AAG-ATGTATTCAC-CT-CTTCG--CC-GT-AACTCCA---GA--CA-A----AGT-AATAACAT-TGTTA-GAAAC-AATGCCG---------------T---------------A-ATAG-T-----------------CA-CT-CA---------------------AATGAC-AGG--------GA-AAATAA----ACTAA-A-AA--TTA-G--TATGCAA-GA-GGGA---GG-TAATTTGG-ATTA-GC-AATAAGGTAAGG--AATCTTGGAAGGGCTGGAACGC-TA--GTTTCT-GTA---T--AAA----TGAGAGTGC--AATAT----------TCA---CA--CTATT--CAG-TG-GTA---------A-ACT---------GGAAAGTGTGAAGTAATTG--CCGCCTC-TC----A--TCT--TAACAGGT-TA--------CGT-AT-CCAATA-----TCGCGTCT---TTTTA-A--T--TAACCCATTT-TAT----TTGATTCAGCAGAGTCC-AGTTTA-A-TATTTTTATTTT---ATAGAATTTTCAG-T----AATATTT-TCATTTTCAGAATT-TTATGTAAA----TCCATTT-ATCGTT-GTAAATGTT---TGC-AT-----TTAA-TTTTAATATTCCATTGTT--AGA-TC-AATGTTTATAT-TTTCCAA--TGTTTTA--------------------------TA-CACAAT-AAGAG-TG--------G----------TA-AACTAGATG--TG--TGCA-A-T-TAATTTGCTCGCCTC-CATTTA-A-----C-ACG--G-ACGG--------------GAAATAAGAACA-GG--AC--CACTCCCC-TA--CCTGTG----GGCAATTTAACCACAGT-CAACAGA---AT-CCAGT-AAA--TCGGCA--TTCGCAACTTC-CAGT-AAGGAA-T-ATTTCT--CT-C-TC--A-GA-TGGCAATTCA-TTTGCGTc
gi|5 : taaagaaaattggAATAAAGAG-TG--------G----------TT-AACTGGAAG--TGTTCATG-AAC-T-GTT---TA-CCTATTCATTCTA-----T-ACA--GGACGG--------------G-GATAAGAACAGGG--C---CACTCCCCGTA--CCT--------------T-------GT-CAACAGA---AT-CCAGT-AAA--TCGG-A--TTCG--ACTTC-CAGTAAAGGAA-T-A-GTCT--CT---TC--ATAAGTGG-ATTTCA-TTTGCGTACT-G-CTTGTTTTTGTTAT-C----CCTAAAACAAATCTTCATCAA-A-CTATTTT-T---GACACACAA-CTG-AAGTC-ATTAGG-TCTGATAA-TA--A-GA---ATCAG-CACGATGAG-TTTCCACAATTTCG--TTGGATTTTCGAG-ACAATA--ACACCCA---ACATA---CAAGTGGTGGAT-CCGGCCT-AAC-AAGAGTGT--TAG---ATATC-GTAAC-ACCTC---CAAGCCAAGGGAGT-GCGAGA-TAG-AAAACA--CAATATTTTCCCGGTATTAAAATCATCAAAATAAACCA--G--AAG-AACAtc
gi|6 : gtgttttaatcatggtatatttgcagtggtcgattattggtattggaatttcgaTAATAATAAAGAGCTG--------G----------TCCGAC-AGAAT--C---TGAA-A-T-T-GT---CGC-CCCATTAATTT-AACAGCT-ACA--G-ATGGTAGCAGCAGGACAGG-AATAA-AACACAGGAA---CACTCCCCCAA--ACTGTATAGTGGGCATTTGA------------AGATGCGT-GTAGT-GA-------------------TTC-CACTAAAGGAA---ATGACT--CT-A-TC--ATGCACGG-ATTTCA--TTGCTTGCT-GGTCTG-CTCCTATAT-C--GACCTAAGCCATA-CTTCAGC---AACTACTTTGT--TGACAGAAAT-CAGAAAGTA-ATT--GGT-TGATAATTG--G-AATTTGTCAGCCATGATGAG-TTTGCA-AATTTC-----GGATTTT-GAA-ATAATATGAAATACA---GTA-GGTTTAAGTGGTGGA-GTCGG-CT-AACGAGGGGTGT--T-GGA-At
gi|7 : CTCTGGAAA-TTGTAAAACAT-CATTCGG--CTCTC-GT--TG-ATT--AAAAAT--AG-CTCT--AA-GATGT-TTGAC-CT-TTTCGCAGC-GC--ACTCCAA--GA--CA-A----AGT-AATAACATC-GTTA-GAAAC-AATG-CG---------------T---------------A-G-AG-T--CA---------A----------GT--TC-------------------GACC-GG--------GG-AAATAA----AACAA-ATAA--TTA-G--T-TACAA-GA-G-GA---GGTTAA--TAG-ATTA-GCAAATACGGTAAGG--AATCTTGGAGGGGT--GAATGC-TA--GT-TCT-GTA---T--AAA----TGAGAG-GC--AATAT-T-TGA------A---CA--CTATTCCCAGCTGCGTAA--------A-ACT---------GGA
gi|8 : catttaaagaaaattgctaCT-GTA---TTTAAA----TGAGAG-GT--TACAGAC-CAAGGTTTTAG-TGG--TTA----CAA-TG--T----------A-ACT---------GGAAGCCTTGGGA--ACTGTT-TGCCTC-TT----GATTTTA-TAC-AGGT-GC--------C-T-AT-CCAGTA-----TCGCG--TA--TTTTA-GACT--TAA---ATTT-TAT----TTGATTTAG-AGGGTTC-AGTTC--A-TA-TTTTATTTT---ACAGAATTTTCAATT----AATATTT-T-ATTTT----ATT----TGTAAA----GA-------------ATAA----T---TGT-AT-----TCAATATTT-AT-ATTCATTGTTAAA-A-TC-AATGTTTATTA-TTTTC-A--TGTTTT---------------------------TATTATAATAAAGAG-AG--------G----------T--
gi|9 : -TC-AATGTTTATTA-ATTCC-A--TGTTTTATATTGTTGTGATAATATTTATCAGACTGTGATAATAAAGAG-TG--------G----------T--AACTGGAGG--T---TATG-A-T-T-GT---CTC-CCTCTTAATTG-A-----T-ACA--G-G----------------------------AC--------CACTCCCCTTA--CCAGTG----GGGCGT-------------AACAGA---AT-CCAGTGAAA--TCGG-A--TTCG--ATTTC-CAGTAAAGGAA-G-ATACCT--C--------ATAAGTGG-ATTTCA-T--GCGTGCTCGACTT-TTTGTTTTAT-CA-GTCCTAATACAAATCTTCATC-A-AACTA-TTT-TAATGACACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CCCTCCTTTTCAAATCAAGTCGAGATACATACATACATATGTAATTGATGTTGCGAATATAAATAT