lowQualScore : 3333 444444444444444 1 11 111 1 222 1 1 1 1 1 333333 11 222 11 1 2 22222 111 11 1 22222 1 11 11 1 1 22 1 11 77777777777777777777777777 1 1 2222 1 1 999999 1 11 11 3333 1 22 2222222222 11 11 1 11 22222222 11111 1 88888 111 11 1 5555555555 1 1 1111 111 1 3333 2222 11 111 1 1 333333 22 2 1 1 1 111 11 222222 222 111 22222 2222222 22222 1 1 2222222 111 1 111 333333333 111 222222222222 88888888888888888888888 3333333 11 22222 333333333333333 11 11 222222222 111 11 111 11 22 1111 111 11111 111 11111111 111111 111 22222222 11 1 111 33333333333 11111 1111 1111 22 11 33 11 2 1 111 111 222222222222 1111
lowQualScore : 0 0000 8 222222222222222 3 7 88 777 3 555 3 3 7 3 7 7 6 3 3 888888 55 6 555 44 3 8 77777 666 44 3 77777 6 3 88 88 7 6 2 88 3 6 88 6 88888888888888888888888888 7 4 6 7 3 6 7 3 6 7 1111 9 0 1 2 6 3 0 000000 0 33 7 33 1111 2 3 7 33 9999999999 33 33 0 2 0 22 3 7 77777777 55555 0 22222 777 33 0 8888888888 3 8 0 0 5555 777 0 6 4444 1111 11 7 666 3 3 888888 00 0 0 0 6 0 0 6 777 11 2 666666 777 777 77777 0 3333333 66 2 55555 55 0 0 99 5 1111111 1 6 88 222 3 888 222 6 99 6 222222222 3 888 555555555555 1 1 0 3 00000000000000000000000 5 0000000 1 6 11 8 8 5 00000 88 111111111111111 99 0 77 77 3 33 6 888 77 0 5 666666666 6 6 111 11 9999 8 444 99 33 77 2222 000 3 0 77 44444 000 5 5 55555555 77 77 666666 6 7777 6 111 22222222 55 66 5 5 99 44 8 0 8 444 8 8 8 44444444444 0 3 88 8 8 33333 7777 8 5 7777 22 11 8 55 66 2 2 0 666 5 5 77 000 555555555555 3333 5 5 99 8
lowQualScore : . .... . ............... . . .. ... . ... . . . . . . . . . ...... .. . ... .. . . ..... ... .. . ..... . . .. .. . . . .. . . .. . .......................... . . . . . . . . . . .... . . . . . . . ...... . .. . .. .... . . . .. .......... .. .. . . . .. . . ........ ..... . ..... ... .. . .......... . . . . .... ... . . .... .... .. . ... . . ...... .. . . . . . . . ... .. . ...... ... ... ..... . ....... .. . ..... .. . . .. . ....... . . .. ... . ... ... . .. . ......... . ... ............ . . . . ....................... . ....... . . .. . . . ..... .. ............... .. . .. .. . .. . ... .. . . ......... . . ... .. .... . ... .. .. .. .... ... . . .. ..... ... . . ........ .. .. ...... . .... . ... ........ .. .. . . .. .. . . . ... . . . ........... . . .. . . ..... .... . . .... .. .. . .. .. . . . ... . . .. ... ............ .... . . .. .
lowQualScore : 8 2222 0 333333333333333 3 3 33 777 3 777 3 3 3 3 3 3 0 3 3 333333 77 0 000 33 3 7 77777 777 33 3 77777 7 3 33 33 3 7 3 33 3 0 33 7 00000000000000000000000000 3 7 0 3 3 7 3 3 7 3 0000 2 0 2 0 5 2 0 000000 0 88 8 88 2222 5 2 2 88 0000000000 88 88 8 5 0 00 0 0 00000000 88888 0 00000 888 22 0 5555555555 2 8 0 0 0000 555 0 0 8888 2222 22 3 333 3 3 333333 77 0 2 0 0 0 0 0 555 22 5 222222 555 555 88888 2 5555555 55 2 00000 00 0 0 22 2 7777777 0 7 88 777 3 777 555 7 77 7 222222222 2 333 888888888888 0 8 3 3 77777777777777777777777 3 8888888 8 7 00 0 0 0 22222 88 444444444444444 00 8 22 33 7 88 7 666 99 7 7 222222222 7 7 777 00 2222 0 000 66 00 99 1111 000 6 1 99 44444 000 7 7 00000000 44 99 666666 7 8888 7 777 00000000 33 11 1 7 22 55 0 0 0 000 0 0 0 22222222222 8 2 88 0 0 00000 0000 0 0 0000 00 00 0 00 88 5 8 0 222 7 7 11 000 111111111111 6666 7 7 22 0
consensus : TGGATCATAAT-NTTATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGACG------TAATATTCCTCGTG--ACG-CATTGAA-ATACGTCAG-TTGTATGTA---A-ACAGAGGATGGG-G-AAGTC-GAAAGAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATCAAGCAGTC--GATA-TCGCCGGGAGTTTG--GGACTNAAT-GGT-GTACAGT-GTGT-G---CTGTAATAAAGCGNTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACAAGACGAGCGAT-CAG-TT---TTTGAGGTTA-GTAAA--ANCCCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGC-ATTCAATCAGTTCG--G-AGA--AAA--TACTNTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTT--CC-GT-AATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAGAGANA--AACATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GGGA----AAA-GACATTGGAAAGTTGATAATGACC-GGAACCGTGT-GATATTTT-CTG------ATGAA-TGTAAG-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCC-NGGAC--GAAG---AGTG----GTTGCCCCG----TTGCATTAGTCCCGGTCGC-----GGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAAN-GGACCAGGTAC--TTTGA-CAG-T-TG-T-AA-ATGGTAATATAA-ACG-CN-A-A-GATACATAG---AAATTA--T--AG-A-CAATGAATTATGGCCAGTTGTCGCCNGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AGATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAA-GTG-T-CGT--A--A---ATTTA-CAAAAATGACA-ATAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGTTG-GTTAT-TGT---TGAAAAATCAGCT-GAAAAAA--TGC----GCTA---ATCGAATAGATAA--CG-CG--GCCGA---CCTCGAAC-GAGA-AATT-AGN----AGA-ATATG--GA-CTGCCATCCCA-A-TC-CACT-ACA---TAC-AGA-A-CTAT-ACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-AAA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAACN-GGGTCCGTATG-TTT--CTAATGAC-GCG-ACG-ACGCCAT---TTTG----T-------TTAT-AATA-TTA-TGA--TCCAC-CGCTGT
Reference ( gi|2 ) : TGGATCATAAT-TTTATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATGTGGACAAATGACACCAC-GTATTATAATT-AGATGTGACG------TAATTTTCCTTATG--ACG-TATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTC-AAAAGAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTTAAAGTGGAATTAAGCAGTCC-GATA-TCACCAGGAGTTTG--GGACTGAATAGGT-GTACAGTTGTGT-G---CTGTAATAAAGCGATATATGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAGATTAAATTTGAGGTTA-GTAAA--ATCCCAC--CGT----GTAGAGCCTTTGAAAGATATTACTCAAAG--ATTCAATCCGTTCG--G-AGA--AAA--TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTCTGTT--CC-GT-AATAAATACATGTATCACAAACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAGAGAGA--AACATGAAAAAGCGT---GT-GACATGGGCTAG--A-GGGA----AAA-GACATTGGAAAGTTGATAATGAAT-GGAACCGTGT-GATATTTT-CTG------ATGAA-TGTAAA-GTGGTAAT-TAGA-GAAA-ATAGCCGCGTATAT---GT-ATGGCGGAG-GCC-AGGA---GAAG---AGTG----GTTGCCCCA----TTGCATTAGTCCCAGTCGC-----GGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAAT-GGACCAGGTAC--TTTGA-CAG-T-TG-T-AA-ATGGTAATATAA-ACG-CCAAGA-GATACATAG---AAATCA--T--AG-G-CAATGAATTATGGCCAGTTGTTGCCAGGCATTTTCC------------------T----CAGAATAACTT-TA-TTTTTCA-AGATGATAA--TGCGC-CGG-TGCATCGCTCA-AGAA-GTG-T-CGT--A--A---ATTT--CAAAAATGACA-ATAATATTCGTGAAATGCTGTGGCCAGCA--CAA--TCACCA-GAT-------A-CTAA-TAT-TATTG---AAAAC--TGTTG-GTTAT-TGT---TGAAAACTCAGCG-GAAAAAA--TGC----GCTA---ATCGAATAGATAA--CG-CG--GCCGA---CCTCGAAC-GAGA-AATT-AGA----AGA-ATATG--GA-CTGTCATCCCA-A-TC-CACT-ACA---TAC-ATA-A-TTAA-ACAA-GTCAC-TTCCTC--GACAAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-GCG--AA-TTCGCTG-GTTTTTAAACA-GGGTCCGAATG-TTT--CTAATGAC-GCG-ACG-ACGCCAT---TTTG----T-------TTAT-AGTA-TTA-TGA--TCCAC-CGCTGT
gi|3 : TGGATCATAAT------------AATGGC-GTCCGTTGT-GTC--GGCTCGT-GAA-T--TTCAACTTTTTTTA-TTTAC-CTTT---ATTCCTTCTTTAAATGC-CAGTG---ATAA-A-AGATCATAACTATGGACAAATGACACCACTGTATTATAATTTAGATGTGACG------TAATATTCTTCGTGGGACG-CACTGAACATACGTCAG--TGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAAAGAT-TTATCACCAAGCTC-ATAAAAACAAAGGGTTGTA-AAT--AG--CTTC-AAAGTGGAAT-AAGCAGTC--GATA-TCGCAGAGAGTTTA--G-ACTAAATTGGT-GTACAGT-GTGTTG---CTGTAATAAAGCGTTATGTGGAGAG-GGTTC-C-TGGAGA-CAA-GCCTC-AACGGGAAGGA--G--AAAAAATTAG-CATGCAA--CGAGCGAT-CAG-TT---TTTGAGGTTA-GTAAA--AACCCAT--CGTC---GTAGAGCCTTTGAAAG-TATTACCCAAAGC-ATTCAATCAGTTCA--A-AAATTACA--TGCTTTTCCA-GA-GTTACAGTTAAAAG----TGTTTGTT--CC-GT-AATAAATA----TACCG---ACGTGT-TGTTAGA-AAA----------CATC-G-AATT-CGAGAGACG--AACATGAAAAAGCGT---GT-GGCATGGGCTAGGTA-GGAA----AAAAGACATTGGAAAGTTGATAATGACTTGAAACCGTGTCGATATTTTTCTG------ATGAAATGTAAAAGTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GTGATGGCGGAGAGCC-TGGA---GAAG---AGTG----GTTGCCCAG----TGGCATT-GTCCCGGTCGC-----G-CGC-TA-AAGTCAGTATGA--TGATTTGGGT-TG-------TATCTGC-TG-AAT-GGACCAGGTAC--TTTGA-CAGCT-TG-TTGA-ATG-TAAT-TAA-GC--CCAGTA-GATACATAG---AAATCA--T--AG-A-CAATGAAT-GTGGCCAGTTGTTGCCAGGCATTTCCC------------------T----CAGAATGACTT--A-TTTT-CA-AGA-GATAA--TGCGC-CGGATG-ATCGCGCA-AGAA-GTG-TTCGT--A--A---ATTT--CAAAA-T-ACA--TAATATTCGTGGAATGCTGTGGCCAGCA----A--TCACCA-GAT-------GTCTAA-TAT-TATTG---AAAAC--TTATGTGTTAT-TGT---TGAAAAAATAGCTTGAAAAAA--TGC----GCTA---ATCGAATAGATAA--TGGCA--GCCGA---CCTCGAAC-GAGACAATT-AGG----AG--ATATG--GACCTG-CATCCCA-A--C-CACTAACA---TAC-AGA-A-CTAT-ACAA-ATCACTTTCCTC--GACGAA-T-GTCAAGAT-CA---TACGATC-GGAAGAGATA-TGCC--C--A-----AATATTAGGATAG--TTCA-ATTAT-TT-C-A-ATC----CATAAAA----AAATCAACG--AA-TTCGCTGTCTTTTTAAACG-GG--CCGTATG-TTTGGCTAATGACGGCG-ACG-ACGCCATTTGTTTA----TCATATTCTTAT-AATA-TTA-TGA--TCCAC-CGCTGT
gi|11 : cggTGGATC-TAAT-T--ATAAACAAAATGGC-GTCa
gi|13 : ataacaaatccttcctcgagaatggtagatcatacgatccgaaaggatatgccagatagtaaatattagtaagtttcaattattttcaatcctaaaaaaatcacgaattcgctgttttttaaaccgggtccgtatgttttaatgcgcgacTGGATCATAAT-ATTATAAACAAAATGGC-Gcgcgctgta
gi|1 : gtttcaattatttcaatccatacaaaatcacgaattcactgttttttaaaccgagtccgtatgtttctaatgatgtgacgcGGATCATAATATTGATAAACAAAATGGCCGTCCGT-GTTGTCTCGGTCTGTTAAAATCCTTCAACTTTATT-AGTTTACTCTTTATTAATCCT-TCTTAAATGCTATGTGTCCATAAGATAGATT-TACATATGGACAAATGACACTAC-GTTTTATAATT-AGATGTGACGGTATATTAATT---CTTGT---ACGCTATTGAA-ATAAGTCAG-TTGTATGTA---AGAAAGAGGATGGG-GGAAGTC-GAAAGAGGTTATCACCGAGCTTTA---AAACAAAGGGTT-TACAATTTAGACCATTCAAA-TGGAATCTAGCAGTCCCGATAGTCGCCAGGAGTTTGTGGGACTTAATAGGTTGTACAGT-GTGT-GGTTCTGTAATAAATCGATATGTGGAGAGAGGTTCTCGTGGAGAACAAAGCCTCGAACGGTA-GGATTAGAAAAAA-CTAT-GATACGAGACGAGCGATTCAGTTT---TTTGAGGTTAAGTAAATAACACCACTTCGT----GTAGAGC-TTTGAAAGATATTAC-CAAAATTATTCAATCAGTCTGCAG-AGA--AAA--TACTGTTTCATGAACTGACAGT-AAAAGGGATTGTTTGTT--CCCGT-AATAAATA-----ATCACAGACGTGT--GTTAGATAAAGAGGATACGACATCCGCAATTTCGAGTGAGACGAACATGAAAAAGCGTTTTGTCGGCATGGGCTAGC-ATGGGATAAAAAG-GACAT-GGAAAGTTGATTATATAC-TGAAACGTGT-GATATTTT-TTGTGGAGGATGAA--GTAAGTGCGTTAATATGGATGAAATATAACCGCGTATACATAGT-GTGGCG-AG-GCTGAGGATGAAAAG---AGTAAGGTGTTACCCAG----CTGCATTAGTCCCGGTCGC-----GGCGCTTATAAGTCAGCTTGA--T--TTTGGGGGTG-------TATCTGC-TGGAAT-CGACCAGGTAC--TTTGACCAG-T-TGTT-AA-ATGA-AATATAATATGCCCCAGAGGATACATAAATTAAATTAATT--AGAA-CAATGAATTATGGC--ATTGTTGCCAGGCATTTTTC------------------CCGTACAGAATGAATTATACTCTTTTACAGATGATAATTTGCGCTCGG-TGCATCGCGCAGATAA-GTGTT-CGT--A--AAATATTT--CAAAAATAACA-ATAATATTCGTG-AATGCTGTGGCCAGCATTCAA--TCGACACGAT-------G-CTACTTATCTATTGGTAAAAACTTTGTTG-GTTATGTGT---TGAAAA-TCAGCT-GAAAAAAATTGT----GTTA---AACGAATAGATAATTCG-CGTAGCCGA---CCTCGAACAGAGA-AATTAAGA----TGATATATGGCGA-CTGCGATCCCA-ACTCGCACT-ACAAGCTACAATACC-TTAT-ACAATGTCAC-TTCCTTCAGACGAACTGGT-AAGATGCA---TACGATC-GAAAG-GATATTGCCGACATA-----AATA-TAGATAAGTCTTCA-TTGATGTT-CTACATC----CAT-AAAAACTAAATCTACGTTAATTTCGCTGTTTTTTTAAACACGAGTCCG-TTGTTTT--CTAAT-AC-GCGCACG-AC-C--T---TTTGTGTTT-------TTAT-AAGATTTATTGAATTCCAC-CGCTGTccgctgtac
gi|4 : CATAAT-ATTATAAACAAAATGGC-GTC---------------TCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGATG------TAATATTCCTTGTG--ACA-CATTGAA-ATACGTCAGTTTGAATGTATAAA-ACAGAGGATGGGTG-AAGTC-GAAAGAT-TTATCACTGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCG-GATA-TCGCCAGGAGTTTG--GGACTG-----------------------------AATAA-GCGGTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCCCGAACTGGAAGGA--AGAAAAAACTTAG-CATACAAGACGAGCGAT-CAG--T---TTTGAGGTTA-GTAAA--AACCCAC--TGT----GTAGAGCCTTTGAAAGATGTTACCCAAAG--ATTCAATCAGTTCA--G-TGA--AAA--TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGCTTGTT--CT-GT-AATAAATA------TCACAGACGTGT-TGTTAGA-AAAAG--------CATCCG-AATT-CGAGAGACA--AACATGAAAAAGCGT---GT-GGCATGGGCTAG--A-GGAA----AAA-GACATTGGAAAAATGATAATGACT-GGAACCGTGT-GATATTTT-CTG------ATGAA-TGTAAA-GTGGTAAT-TGGA-GAAA-ATAACAGCGTATAT---GT-ATGGCGGAG-GTC-TGGA---GAAG---AGTG----GTTGCCCCA----ATGCATTAGTCCCGGTCGC-----GGCGC-TA-AAGTCAGCATGA--TGATTTGGAGGTT-------TATCTGC-TGGAAA-GGACCAAGTAC--TTTGA-CAG-T-TG-T-AA-ATGGTAATATAA-ACG-CGCAGA-GATACATAG---AAATCA--T--AG-A-CAATGAATTATAGCCAGTTGTTGCCAGGCATTTTCC------------------T----AAGAATGACTT-TA-TTTTTCA-AGATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAA-GTG-T-CGT--A--A---ATTT--CAAAAATGACA-ATAATATTCGTGGAATGCTGTGGAAAGCA--CAA--TCACCA-GAT-------G-CTAA-TAT-TATTG---AAAGC--TGTTG-GTTGT-TGT---TGAAAAATCAGCT-GAAAAAA--TGC----GCTA---ATCGAATAGATAA--CG-CA--GCCGA---CCTCGAAG-GAGA-AATT-AAA----AGA-ATATG--GA-CTGCCATCCCA-A-TC-CACT-ACA---TAC-AGA-A-CTAATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTa
gi|8 : AGAAAATTGGACATTAAAAACGAGCG-T-CAG-CTA---TTATGGCTT-GTAAA--ATCTTAC--CGTACCTGCGACTCCATTGAAAGACATAACAGGACA--ATTTAATCAA---G--GTAGG--AAAGTTCCTCTGTCT-GAA----CAATCAATTCA---T---TGTTATTT-GTCAAAAAATAAAT--ATCATCGACATGTGTGCAGGA-AGAAA----AT--TA---G-GATT-CAGGAACAA--AACAGGAAAAATCGT---GT-GGCATGGGGGAGG-A-GGGA----AAT-GA
gi|7 : GTCAG-GTGATGGT-TGGA-AACA-ATAATCGGATTTAT---AT-TTGGCGGAA-AT--GGGAC--GAAGTCGAGT-----------CCAGAGATTGCGT-ATGCCCACCTGCTCAGAGG-----A-AACTTTCCATCA--TGATCTGGGGATGCAATACGTATC-AC--GGCGTAGGAACAATCAC-----GA-CAG-TATA-T-GGCACGATAA-ATAG-ACA-C----A-AATACATTG---AAATAC--TCGAG-GACAAT---TTATGGCCAGTGATCGCACGGCATTTTCCGGA---------------G----CAGGATTGCT-----TGTTTCA-AGATGAtcaacgatggactgttg
gi|9 : aaCATGAGTTGATT-----GTG-------TATTTGC-TGGAAA-GATCCAAAGAC--ATTAA-TGG-A-TA-T-AA-ATGGAATTATAA-ATG-CT-------------G---AAATT-------G-A-CAATGAGTTATAGCCATTTGTCCCTTAGCATTTCCC-----------------------CAAAATAA----TC-TTTTTAA-GAATGACAA--TGTTT-GTG-TGCATCG-----AGCACGTA-T-CGCCCAGCA---GTTTACTAAAAAAAACCCACAACATTT-----ATGCT-----CAGAG--CAG--TTACCA-GAT-------
gi|5 : A--TGATTTGGGGTTG-------CAT-TACATGGCAC-GGAATCGGCACGATTTCAGCAG-T-TG---AA---GGCAATATTA-AAG-AAAACA-AAC-CCCAGC--AAATTC--T--AG-T-TGACAATTTGTAGTCTGTGATAGCTCAACATTTTCCAAACGACCAGTACATATTT----CAGGATGAC---CA-TATTTCA-AGATAACAA--TGCGC-CTG-TTGACCGTGTA-CGA---TG-C-------------ATTCA-CAGAAATG-CC-ATAACAACAATGA---GC--TGACCAGCA--GAAAGTCA--A-GAC-------A-TTAA-CAT-AATTG----AAAC--TATTG-G--GC-TGCACATCAAAATAAAGCT-TCAGGGA--CGC----ATTG---GTAGAATGGAGAA--CA-AG--GACGATATCTTC---C-GTGA-AATT-CAT----ACA-ATTTG--GA-CGGCCAgaa
gi|6 : -ACAATTTTCATGGAATGTTCATGCCAGCA--CAA--TCACCA-GATCCTCTATG-CTAA-TCT-TATTG---AAAAC--TGTT-----AT-TGT---TGAAAAATCAGCT-GAAAACA--TGCACTAGCTA---ATCAAATAAATGA--TG-CA--GTCGA---TCTCGAAT-GAGA-AATT-AGATTGAAGA-ATATG--GA-C-------CCA-A-TT-CACT-ACA---TAC-AGA-ACTTAT-ACAA-GTCTC-CTCCTT--GATGAA-TGGTCAAGAT-TAATTTATGATC-GAAAA-GATA-TGCT-ACA-A-----AATATTAGGTAAGT-TTCATGTTAT-TT-A-G-ATTCATGCAT-ACA----TAATC-ACG--AA-Tcgcacttcagtatgtccagagtctatatcgatcgattccgttcg
gi|10 : GGCCAGCA--CAA--AGTCTT-GAC-------A-TTAA-TAT-CATTG---AAAA
gi|14 : cataaccacgatgagcaAAAAA--T-C----ACTAGATATTGAAT-GAT-----G-TT--ATCGA---CCTCAAAC-AATA-AGTT-CGC----TGA-ATATG--GA-CTGCCATCCTAGA-TT-C-CT-ATG---CAC--TA-A-ATAT-TCAA-ATGAC-TTCTTtatacggctacgcctcaaaagaaagctagaggggcgtgttgataggattgagaacaaagatgatctcttccttgaaattcacagtatctggatatccatcacacctcagtatgtctggaaagcttataccgatcgattcca
gi|12 : AAAAA--CGA----ACAG---GTCGATTCGATAA--CG-TA--ACCAA---ACTTGAAC-AAGA-AATC-AAG----AGT-ATCTG--GAGCAAGAAACCC--A-TC-TACT-GCA---TTC-AAA-ACCTAT-ACAA-CTCCC-TACTAC--GACAA
gi|11 : ttgtctgcttaaaaaacaactcA-ACAA-ATC-C-TTCCTC--GA-GAA-TGGT--AGAT-CA---TACGATCCGAAAG-GATA-TGCC-A-G-ATAGTAAATATTAG-TAAGT-TTCA-ATTAT-TTTC-A-ATC----CTA-AAA----AAATC-ACG--AA-TTCGCTG-TTTTTTAAACC-GGGTCCGTATG-TTT---TAATG-C-GCG-ACG-ACGCCAT---TTTG----T-------TTAT-A--A-TTA--GA--TCCACGCGCTGT
gi|13 : atGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-ACG--AA-TTCACTG-TTTTTTAAACC-GAGTCCGTATG-TTT--CTAATGAT-GTG-ACG-CCGCCAT---TTTG----T-------TTAT-AATA-TTA-TGA--TCCAC-CGCTGTa
gi|3 : GAC-ACA-ACGGACGCCAT---T-----------------------A-TTA-TGA--TCCAC-CGac
gi|1 : AC-G-G-ACG---GCCAT---TTTG----T-------TTATCAATA-TTA-TGA--TCCggctcgtgaatttcaactttttttatttacctttattccttctttaaatgccagtgataaaagatcataactatggacaaatgacaccactgtattataatttagatgtgacgtaatattcttcgtgggacgcactgaacatacgtcagtgtatgtaaacagaggatggggaagtcgaaaagatttatcaccaagctcataaaaacaaagggttgtaaatagcttcaaagtggaataagcagtcgatatcgcagagagtttagactaaattggtgtacagtgtgttgctgtaataaagcgttatgtggagagggttcctggagacaagcctcaacgggaaggagaaaaaattagcatgcaacgagcgatcagtttttgaggttagtaaaaacccatcgtcgtagagcctttgaaagtattacccaaagcattcaatcagttcaaaaattacatgcttttccagagttacagttaaaagtgtttgttccgtaataaatataccgacgtgttgttagaaaacatcgaattcgagagacgaacatgaaaaagcgtgtggcatgggctaggtaggaaaaaagacattggaaagttgataatgacttgaaaccgtgtcgatatttttctgatgaaatgtaaaagtggtaattggagaaaataaccgcgtatatgtgatggcggagagcctggagaagagtggttgcccagtggcattgtcccggtcgcgcgctaaagtcagtatgatgatttgggttgtatctgctgaatggaccaggtactttgacagcttgttgaatgtaattaagcccagtagatacatagaaatcatagacaatgaatgtggccagttgttgccaggcatttccctcagaatgacttattttcaagagataatgcgccggatgatcgcgcaagaagtgttcgtaaatttcaaaatacataatattcgtggaatgctgtggccagcaatcaccagatgtctaatattattgaaaacttatgtgttattgttgaaaaaatagcttgaaaaaatgcgctaatcgaatagataatggcagccgacctcgaacgagacaattaggagatatggacctgcatcccaaccactaacatacagaactatacaaatcactttcctcgacgaatgtcaagatcatacgatcggaagagatatgcccaaatattaggatagttcaattatttcaatccataaaaaaatcaacgaattcgctgtctttttaaacgggccgtatgtttggctaatgacggcgacgacgccatttgtttatcatattcttataatattatgatccaccgctgta
gi|4 : C-ACG-A-G-ACGCCAT---TTTG----T-------TTAT-AATA-TTA-TGgttgtctcggtctgttaaaatccttcaactttattagtttactctttattaatccttcttaaatgctatgtgtccataagatagatttacatatggacaaatgacactacgttttataattagatgtgacggtatattaattcttgtacgctattgaaataagtcagttgtatgtaagaaagaggatgggggaagtcgaaagaggttatcaccgagctttaaaacaaagggtttacaatttagaccattcaaatggaatctagcagtcccgatagtcgccaggagtttgtgggacttaataggttgtacagtgtgtggttctgtaataaatcgatatgtggagagaggttctcgtggagaacaaagcctcgaacggtaggattagaaaaaactatgatacgagacgagcgattcagttttttgaggttaagtaaataacaccacttcgtgtagagctttgaaagatattaccaaaattattcaatcagtctgcagagaaaatactgtttcatgaactgacagtaaaagggattgtttgttcccgtaataaataatcacagacgtgtgttagataaagaggatacgacatccgcaatttcgagtgagacgaacatgaaaaagcgttttgtcggcatgggctagcatgggataaaaaggacatggaaagttgattatatactgaaacgtgtgatattttttgtggaggatgaagtaagtgcgttaatatggatgaaatataaccgcgtatacatagtgtggcgaggctgaggatgaaaagagtaaggtgttacccagctgcattagtcccggtcgcggcgcttataagtcagcttgattttgggggtgtatctgctggaatcgaccaggtactttgaccagttgttaaatgaaatataatatgccccagaggatacataaattaaattaattagaacaatgaattatggcattgttgccaggcatttttcccgtacagaatgaattatactcttttacagatgataatttgcgctcggtgcatcgcgcagataagtgttcgtaaaatatttcaaaaataacaataatattcgtgaatgctgtggccagcattcaatcgacacgatgctacttatctattggtaaaaactttgttggttatgtgttgaaaatcagctgaaaaaaattgtgttaaacgaatagataattcgcgtagccgacctcgaacagagaaattaagatgatatatggcgactgcgatcccaactcgcactacaagctacaataccttatacaatgtcacttccttcagacgaactggtaagatgcatacgatcgaaaggatattgccgacataaatatagataagtcttcattgatgttctacatccataaaaactaaatctacgttaatttcgctgtttttttaaacacgagtccgttgttttctaatacgcgcacgaccttttgtgtttttataagatttattgaattccaccgctgta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAGATGACCAGTGTTCCGTGAAATACAATTGGATTCGTATCACACCTGAGTATGTTTTAAAAATGCCTATACCGCTAGATTCCC
Unaligned ( gi|16 ): AGATTGATGTGGTTTGAAAGAAAATCGTATACCATATA
Alignments
lowQualScore : 1111 1 111111111 1 11 111 1 111 1 1 1 1 1 111 111 1 1 2 111 1 1 1 1 1 11111 1 11 11 1 33 1 11 33333 1 22222 1 1 11 111111 11 2222 1 1111 11 11 11 2222 3333333 3333333333 11 111 11 1111 1 11 1 1 222222 1 111 111 2 111111 3333333333 1111111 1 1 2222222222222 111 2222222222222 66666666666666666666666 22222222 1 1111111111 2 222222 1111111111 111 111111 11111 222222 111 22222222222 1111 1111 1 1 11 111 333333333333 11
lowQualScore : 4444 0 2 666666666 0 0 3 33 111 0 777 0 0 3 0 3 3 2 0 0 777 2 666 0 0 0 3 777 0 0 0 0 0 88888 2 0 33 33 3 2 0 33 0 2 33 2 1 66666 0 33333 1 3 0 2 3 0 2 3 33 2 5 8 3 0 8 666666 8 8 8 1 8 11 5555 0 3 3 8 0 2222 11 11 1 8 0 11 5 0 3333 8 1111111 0 88 8 9999999999 55 8 8 11 1 444 8 33 8 8 7777 3 0 66 2 0 0 888888 0 3 8 8 8 8 8 444 8 8 222 3 555555 0000000000 8888 0 0 8 8 8 77 0 8888888 5 1 999 1 666 1 5 0 3 5 77 7777777777777 5 555 0000000000000 4 2 1 33333333333333333333333 44444444 5 5 99 6 6 2 6 3 3 7777777777 3 6 000000 6 3 1 555 4 66 66 5 9999999999 5 5 000 77 5 5 3 5 222222 55 5 66 9999 777 3 6666 777 777 0 4 4 00000 4 66 66 666 0 9999 555 4 4 777 111111 8 44 3 4 77 6 6 6 111 6 6 6 22222222222 1 6 6 6 77777 4444 6 3 4444 3 99 6 0 0 99 0 8 11 0 8 8 444 444444444444 44 8 88 11 8
lowQualScore : .... . . ......... . . . .. ... . ... . . . . . . . . . ... . ... . . . . ... . . . . . ..... . . .. .. . . . .. . . .. . . ..... . ..... . . . . . . . . .. . . . . . . ...... . . . . . .. .... . . . . . .... .. .. . . . .. . . .... . ....... . .. . .......... .. . . .. . ... . .. . . .... . . .. . . . ...... . . . . . . . ... . . ... . ...... .......... .... . . . . . .. . ....... . . ... . ... . . . . . .. ............. . ... ............. . . . ....................... ........ . . .. . . . . . . .......... . . ...... . . . ... . .. .. . .......... . . ... .. . . . . ...... .. . .. .... ... . .... ... ... . . . ..... . .. .. ... . .... ... . . ... ...... . .. . . .. . . . ... . . . ........... . . . . ..... .... . . .... . .. . . . .. . . .. . . . ... ............ .. . .. .. .
lowQualScore : 8888 0 5 555555555 2 0 2 88 000 0 000 0 0 2 0 2 2 0 0 0 555 0 222 0 0 0 2 555 0 0 0 0 0 55555 5 0 88 88 2 5 5 88 0 0 88 5 0 55555 0 88888 0 2 0 5 2 0 5 2 88 5 6 0 2 8 0 888888 0 0 0 0 0 00 0000 8 2 2 0 8 2222 00 00 0 0 8 00 6 8 0000 0 4444444 6 88 0 4444444444 88 0 0 00 0 000 0 00 0 0 0000 2 0 00 5 0 0 888888 0 2 0 0 0 0 0 000 0 0 222 2 000000 2222222222 6666 8 8 0 0 0 99 7 6666666 7 0 666 4 111 4 7 1 9 7 99 7777777777777 7 777 6666666666666 3 7 0 00000000000000000000000 44444444 7 7 22 7 7 5 7 2 3 5555555555 7 7 333333 7 2 7 111 3 99 99 0 2222222222 7 7 000 99 7 7 6 0 888888 88 0 11 4444 888 7 9999 888 888 1 4 4 44444 4 77 11 444 1 6666 222 4 4 888 999999 9 55 9 0 99 7 7 7 777 7 7 7 22222222222 0 7 7 7 77777 2222 7 0 2222 3 22 7 6 8 00 8 0 00 8 0 0 000 000000000000 44 0 88 00 0
consensus : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGT---AA-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA--TACTGTTTCA-GAA--GTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAACATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCG-GGA-GAA--G---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-A--CGC----NA--AGA--TACAT-AG---AAATCA--T---AG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT-C-AAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
Reference ( family-8953 ) : TGGATCATAATNTT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTCGTG--ACGC-ATTGAA-ATACGTCAG-TTGTATGT---AA-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATCAAGCAGTC--GATA-TCGCCGGGAGTTTG--GGACTNAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGNTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACAAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-ANC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA--TACTNTTTCA-GAA--GTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGANAAACATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-CGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAG-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCN-GGACGAA--G---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-A--CGC----NA--AGA--TACAT-AG---AAATTA--T---AG---ACAATGAATTATGGCCAGTTGTCGCCNGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTTAC-AAAAATG-----A-CAATAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--T-ATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-AAA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-NGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|1 : GGATCATAATATTGATAAACAAAATGGCCGTCCGT-GTTGTCTCGGTCTGTTAAAATCCTTCAACTTTATT-AGTTTACTCTTTATTAATCCT-TCTTAAATGCTATGTGTCCATAAGATAGATT-TACATATGGACAAATGACACTAC-GTTTTATAATT-AGATGTGACGGTATATTAATTCTTGT---ACGCTATTGAA-ATAAGTCAG-TTGTATGT---AAGAAAGAGGATGGG-GGAAGTCGAAA-GAGGTTATCACCGAGCTTTA---AAACAAAGGGTT-TACAATTTAGACCATTCAAA-TGGAATCTAGCAGTCCCGATAGTCGCCAGGAGTTTGTGGGACTTAAT-AGGTTGTACAGT-GTGT-GGTTCTGTAATAAATCGATATGTGGAGAGAGGTTCTCGTGGAGAACAAAGCCTCGAACGGTA-GGATTAGAAAAAA-CTAT-GATACGAGACGAGCGATTCAG-TT---TTTTGAGGTTAAGTAAATAACACCACTTCGT----GTAGAGC-TTTGAAAGATATTACCAAAATTA-TTCAATCAGTCTGCAG-AGA--AAA--TACTGTTTCATGAA--CTGACAGT-AAAAGGGATTGTTTGTTCCCGTAATAAATA-----ATCACAGACGTGT--GTTAGATAAAGAGGATACGACATCCGCAATTTCGAGTGAGACGAACATGAAAAAGCGTTTTGTCGGCATGGGCTAGC-ATGG-GATAAAAAGGACAT-GGAAAGTTGATTATATAC-TGAAAC-GTGT-GATA-TTTTTTGTGGAGGATG-AA-GT-AAGTGCGTTAATATGGATGAAATATAACCGCGTATACATAGT-GTGGCG-AG-GCTGAGGATGAAAAG---AGT-----AAGGTGTTACCCAGC-TGCATTAGTCCCGGTC-GCGGCGCTTATAAGTCAGCTTGA--T--TTTGGGGGTG-------TATCTGC-TGGAATCGACCAGGTAC--TTTGACCAG-T-TGTTAA-ATGA-AATATAATA--TGCCCCAGA--GGA--TACAT-AAATTAAATTAATT---AGA--ACAATGAATTATGGC--ATTGTTGCCAGGCATTTTTC------------------CCGTACAGAATGAATTATACTCTTTTACAG-ATGATAATTTGCGCTCGG-TGCATCGCGCAGATAAGTGTTCG--TA--AAATATTT-C-AAAAATA-----A-CAATAATATTCGT-GAATGCTGTGGCCAGCATTCAA--TCGACACGAT-------G-CTACTTATCTATTGGTAAAAACTTTGT-TG-GTTATGTGTTG------AAAAT-CAGC-TGAAAAAAATTGT----GTTA---AACGAATAGATAATTC-GCGTAGCCGA---CCTCGAACAGAGA-AATTAAG----ATGATATATGGCGA-CTGCGAT---CCCA-ACTCGCACT-ACAAGCTACAATA---CCTT-ATACAATGTCAC-TTCCTTCAGACGAACTGGT-AAGATGCA---TACGATC-GAAAG-GATATTGCCGACATA-----AATA-TAGATAAGTCTTCA-TTGATGTT-CTACATC----CAT-AAAAACTAAATCTACGTTAATTTCGCTGTTTTTTTAAACACGAGTCCGT-TGTTTT--CTAAT-AC-GCGCACGAC-C--T---TTTGTGTTT-------TTATAAGATTTATTGAATTCCAC-CGCTGT
gi|10 : GGCCAGCA--CAA--AGTCTT-GAC-------A-TTAA-TAT-CATTG---AAAA---TATACG-GCTAC-GCCTC-A----AAAGA-AAGC-TAGAGGGG--CGT----GTTG---ATAGGATTGAGAA--C-AAA--GATGA---TCTCTTCC-TTGA-AATTCAC----A-GT-ATCTG--GA-TATCCAT---CACA-C-CT-CAGT-ATG---TCTGGAAAGCT--T-ATACCG-ATCGA-TTCCa
gi|11 : cataaccacgatgagcaACAA-ATC-C-TTCCTC--GA-GAA-TGGT--AGAT-CA---TACGATCCGAAAG-GATA-TGCC-A-G-ATAGTAAATATTAG-TAAGT-TTCA-ATTAT-TTTC-A-ATC----CTA-AAA----AAATC-ACG--AA-TTCGCTG-TTTTTTAAAC-CGGGTCCGTATG-TTT---TAATG-C-GCG-ACGACGCCAT---TTTG----T-------TTATA--A-TTA--GA--TCCACGCGCTGTa
gi|12 : ata-TGCTT-A----AAAAA-CAAC-TCAAAAA---CGA----ACAG---GTCGATTCGATAA--C-GTA--ACCAA---ACTTGAAC-AAGA-AATCAAG----A-GT-ATCTG--GA---GCAAGAAACCC--A-TC-TACT-GCA---TTCAAAAC--C--T-ATACAA-CTCCC-TACTAC--GACAAa
gi|13 : ttgtcGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-ACG--AA-TTCACTGTTTTTT-AAAC-CGAGTCCGTATG-TTT--CTAATGAT-GTG-ACGCCGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|14 : AAAAA--T-C----ACTAGATATTGAAT-GAT------GTT--ATCGA---CCTCAAAC-AATA-AGTTCGC----T-GA-ATATG--GA-CTGCCAT---CCTAGA-TT-C-CT-ATG---CACTAAA------T-ATTCAA-ATGAC-TTCTTac
gi|2 : TGGATCATAATTTT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATGTGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATTTT---CCTTATG--ACGT-ATTGAA-ATACGTCAGCTTGTATGT---AA-ACAGAGGATGGG-G-AAGTCAAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTTAAAGTGGAATTAAGCAGTCC-GATA-TCACCAGGAGTTTG--GGACTGAATAGG--TGTACAGTTGTGT-G---CTGTAATAAAGCGATATATGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAGATTAAATTT-GAGGTTA-GTAAA-ATC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACTCAAAG-A-TTCAATCCGTTCG--G-AGA--AAA--TACTGTTTCA-GAA--GTTACAGTTAAAAGA---TGTCTGTTCC-GTAATAAATACATGTATCACAAACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGAGAAACATGAAAAAGCGT---GT-GACATGGGCTAG--A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AA-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TAGA-GAAA-ATAGCCGCGTATAT---GT-ATGGCGGAG-GCCA-GGA-GAA--G---AGT-----G----GTTGCCCCAT-TGCATTAGTCCCAGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAATGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-A--CGC----CA--AGAGATACAT-AG---AAATCA--T---AG---GCAATGAATTATGGCCAGTTGTTGCCAGGCATTTTCC------------------T----CAGAATAACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCTCA-AGAAGTG-TCG--TA--A---ATTT-C-AAAAATG-----A-CAATAATATTCGTGAAATGCTGTGGCCAGCA--CAA--TCACCA-GAT-------A-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAACT-CAGC-GGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGA----A-GA-ATATG--GA-CTGTCAT---CCCA-A-TC-CACT-ACA---TACATAA---T--T-AAACAA-GTCAC-TTCCTC--GACAAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-GCG--AA-TTCGCTG-GTTTTTAAAC-AGGGTCCGAATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAGTA-TTA-TGA--TCCAC-CGCTGT
gi|3 : TGGATCATAAT------------AATGGC-GTCCGTTGT-GTC--GGCTCGT-GAA-T--TTCAACTTTTTTTA-TTTAC-CTTT---ATTCCTTCTTTAAATGC-CAGTG---ATAA-A-AGATCATAACTATGGACAAATGACACCACTGTATTATAATTTAGATGTGACGTAATATT---CTTCGTGGGACGC-ACTGAACATACGTCAG-T-GTATGT---AA-ACAGAGGATGGG-G-AAGTCGAAAAGAT-TTATCACCAAGCTC-ATAAAAACAAAGGGTTGTA-AAT--AG--CTT-CAAAGTGGAAT-AAGCAGTC--GATA-TCGCAGAGAGTTTA--G-ACTAAATTGG--TGTACAGT-GTGTTG---CTGTAATAAAGCGTTATGTGGAGAG-GGTTC-C-TGGAGA-CAA-GCCTC-AACGGGAAGGA--G--AAAAAATTAG-CATGCAA--CGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAT--CGTC---GTAGAGCCTTTGAAAG-TATTACCCAAAGCA-TTCAATCAGTTCA--A-AAATTACA--TGCTTTTCCA-G-A--GTTACAGTTAAAAG----TGTTTGTTCC-GTAATAAATA-------TACCGACGTGT-TGTTAGA-AAA----------CAT-CG-AATT-CGAG--AGACGAACATGAAAAAGCGT---GT-GGCATGGGCTAGGTA-GGAAA----AAAGACATTGGAAAGTTGATAATG-ACTTGAAACCGTGTCGATATTTTTCTG------ATGAAATGTAAAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GTGATGGCGGAGAGCCT-GGA-GAA--G---AGT-----G----GTTGCCCAGT-GGCATT-GTCCCGGTC-GC-GCGC-TA-AAGTCAGTATGA--TGATTT-GGGTTG-------TATCTGC-T-GAATGGACCAGGTAC--TTTGA-CAGCT-TGTTGA-AT-GTAAT-TAA-G--C-C----CAGTAGA--TACAT-AG---AAATCA--T---AG---ACAATGAA-TGTGGCCAGTTGTTGCCAGGCATTTCCC------------------T----CAGAATGAC-T-TA-T-TTTCA-AG-A-GATAA--TGCGC-CGGATG-ATCGCGCA-AGAAGTGTTCG--TA--A---ATTT-C--AAAAT------A-C-ATAATATTCGTGGAATGCTGTGGCCAG----CAA--TCACCA-GAT-------GTCTAA-TAT-TATTG---AAAAC--TTA-TGTGTTAT-TGTTG-A----AAAAA-TAGCTTGAAAAAA--TGC----GCTA---ATCGAATAGATAA--TGGCA--GCCGA---CCTCGAAC-GAGACAATTAGG----A-G--ATATG--GACCTG-CAT---CCCA-A--C-CACTAACA---TACAGAA---C--T-ATACAA-ATCACTTTCCTC--GACGAA-T-GTCAAGAT-CA---TACGATC-GGAAGAGATA-TGCC--C--A-----AATATTAGGATAG--TTCA-ATTAT-TT-C-A-ATC----CATAAAA----AAATCAACG--AA-TTCGCTGTCTTTTTAAAC-GGG--CCGTATG-TTTGGCTAATGACGGCG-ACGACGCCATTTGTTTA----TCATATTCTTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|4 : cggCATAATATT-ATAAACAAAATGGC-GTC---------------TCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGATGTAATATT---CCTTGTG--ACAC-ATTGAA-ATACGTCAGTTTGAATGTATAAA-ACAGAGGATGGGTG-AAGTCGAAA-GAT-TTATCACTGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCG-GATA-TCGCCAGGAGTTTG--GGACTGAAT-------------------------------AAGCGGTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCCCGAACTGGAAGGA--AGAAAAAACTTAG-CATACAAGACGAGCGAT-CAG--T---TTT-GAGGTTA-GTAAA-AAC-CCAC--TGT----GTAGAGCCTTTGAAAGATGTTACCCAAAG-A-TTCAATCAGTTCA--G-TGA--AAA--TACTGTTTCA-GAA--GTTACAGTTAAAAGA---TGCTTGTTCT-GTAATAAAT------ATCACAGACGTGT-TGTTAGA-AAAAG--------CATCCG-AATT-CGAG--AGACAAACATGAAAAAGCGT---GT-GGCATGGGCTA-G-A-GG-AA----AAAGACATTGGAAAAATGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACAGCGTATAT---GT-ATGGCGGAG-GTCT-GGA-GAA--G---AGT-----G----GTTGCCCCAA-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGAGGTT-------TATCTGC-TGGAAAGGACCAAGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGCGC----AG--AGA--TACAT-AG---AAATCA--T---AG---ACAATGAATTATAGCCAGTTGTTGCCAGGCATTTTCC------------------T----AAGAATGACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT-C-AAAAATG-----A-CAATAATATTCGTGGAATGCTGTGGAAAGCA--CAA--TCACCA-GAT-------G-CTAA-TAT-TATTG---AAAGC--TGT-TG-GTTGT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCA--GCCGA---CCTCGAAG-GAGA-AATTAAA----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--TAATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTa
gi|5 : A--TGATTTGGGGTTG-------CAT-TACATGGCACGGAATCGGCACGATTTCAGCAG-T-TG---A-A-GGCAATATTA-A--AGA----AA--ACA--AACCCCAGC--AAATTC--T---AGTTGACAAT---TTGTAGTCTGTGATAGCTCAACATTTTCCAAACGACCAGTACATATTT----CAGGATGACC---A-TATTTCA-AG-ATAACAA--TGCGC-CTG-TTGACCGTGTA-CGA--TG-C------------ATTCAC-AGAAATGCCATAA-CAACAAT-------GA--GC--TGACCAGCA--GAAAGTCA--A-GAC-------A-TTAA-CAT-AATTG----AAAC--TAT-TG-G------GCTGCACATCAAAATAAAGC-TTCAGGGA--CGC----ATTG---GTAGAATGGAGAA--C-AAG--GACGATATCTTC---C-GTGA-AATTCAT----A-CA-ATTTG--GA-CGGCCA----CGCA-C-TT-CAGT-ATG---TCCAGAGT--C--T-ATATCG-ATCGA-TTCC
gi|6 : ACAATTTTCATGGAATGTTCATGCCAGCA--CAA--TCACCA-GATCCTCTATG-CTAA-TCT-TATTG---AAAAC--TGT-T-----AT-TGTTG-A----AAAAT-CAGC-TGAAAACA--TGCACTAGCTA---ATCAAATAAATGA--T-GCA--GTCGA---TCTCGAAT-GAGA-AATTAGATTGAA-GA-ATATG--GA-C----------CCA-A-TT-CACT-ACA---TACAGAA---C--TTATACAA-GTCTC-CTCCTT--GATGAA-TGGTCAAGAT-TAATTTATGATC-GAAAA-GATA-TGCT-ACA-A-----AATATTAGGTAAGT-TTCATGTTAT-TT-A-G-ATTCATGCAT-ACA----TAATC-ACG--AA-Tgttcg
gi|7 : GT-CAG-GTGATGGT-TGGA-AACA-ATAATCGGATTTAT---AT-TTGGCGGAA-AT-G-GGACGAA--GTCGAGTCCAGAG----ATTGC---GTATGC-CCA--CCTGCTCAGAGG-----A-AACTTTCCATCA--TGATCTGGGGATGCAATACGTATC-AC-GGCGTAGGAACAATCAC-----GA-CAG-TATA-TGGCACGATAA-ATAG-A--CAC----AA--A----TACAT-TG---AAATAC--TCGAGG---ACAAT---TTATGGCCAGTGATCGCACGGCATTTTCCGGA---------------G----CAGGATTGCT-----TGTTTCA-AG-ATGA
gi|8 : aaAGAAAATTGGACATTAAAAACGAGCG-T-CAG-CT---ATT-ATGGCTT-GTAAA-ATC-TTAC--CGTACCTGCGACTCCATTGAAAGACATAAC--AGGACAATTTAATCAA---G--GTAGG--AAAGTTCCTCTGTCT-GAACAAT--CAATTCATTGT---TATTTGTCAA-AAAATAAATA------TCATCGACATGTGTGCAGGA-AGAAA----AT--TA---G-GATT-CAGG--AACAAAACAGGAAAAATCGT---GT-GGCATGGGGGAGG-A-GG-GA----AATGA
gi|9 : CATGAGTTGATT-----GTG-------TATTTGC-TGGAAAGATCCAAAGAC--ATTAA-TGG-A-TA-TAA-ATGGAATTATAA-A--TGC----T---------------G---AAATT--------G---ACAATGAGTTATAGCCATTTGTCCCTTAGCA-TTTCC------------------C----CAAAATAATCT------TTTTA-AGAATGACAA--TGTTT-GTG-TGCATCGAGC----ACGTA-TCGCCCAGCA---GTTTACTAAAAAAA-----ACCCACAACATTT-----ATGCT-----CAGAG--CAG--TTACCA-GAT-------G-tcaacgatggactgttg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGATGACCAGTGTTCCGTGAAATACAATTGGATTCGTATCACACCTGAGTATGTTTTAAAAATGCCTATACCGCTAGATTCCC
Unaligned ( gi|16 ): AGATTGATGTGGTTTGAAAGAAAATCGTATACCATATA
Alignments
lowQualScore : 111 1 111111111 1 11 111 1 111 1 1 1 1 1 111 111 1 1 1 11111 1 1 1 1 11111 1 11 11 11 1 11 33333 1 22222 1 1 11 111 11 2222 1 1111 11 22222 2222 444444 3333333333 11 111 22 1111 1 1 1 1 222222 1 111 1111 111 3333333333 1111111 1 1 333333333333333 111 1111111111111 66666666666666666666666 22222222 1 1111111111 11 222222 1111111111 111 111111 11111 222222 111 22222222222 1111 1111 1 1 11 111 333333333333 11
lowQualScore : 000 0 2 666666666 0 0 3 33 111 0 777 0 0 3 0 3 3 0 0 777 666 0 0 9 88888 0 0 0 0 88888 2 0 33 33 3 2 7 88 0 33 2 0 66666 0 33333 1 3 0 2 3 0 2 3 33 2 5 8 3 0 8 8 444 88 8 8 1 8 11 5555 0 3 3 8 0 2222 11 00000 3 8 5 5 0 3333 8 000000 0 88 8 9999999999 55 8 8 11 8 444 8 33 8 8 7777 3 0 0 2 0 0 888888 0 3 8 8 8 8 8 444 8 8 66 7777 8 444 0000000000 8888 0 0 8 8 8 77 0 8888888 5 1 999 1 666 1 5 0 3 5 555555555555555 5 555 8888888888888 4 2 1 33333333333333333333333 44444444 5 5 99 6 6 2 6 3 3 7777777777 55 000000 6 3 1 555 4 66 66 5 9999999999 5 5 000 77 5 5 3 5 222222 55 5 666 9999 777 3 6666 777 777 0 4 4 00000 4 66 66 666 0 9999 555 4 4 8888 111111 8 44 8 4 77 6 6 6 111 6 6 6 22222222222 1 6 6 6 77777 4444 6 1 4444 3 99 6 0 0 8 0 0 8 11 0 8 8 444 444444444444 44 8 88 11 8
lowQualScore : ... . . ......... . . . .. ... . ... . . . . . . . . ... ... . . . ..... . . . . ..... . . .. .. . . . .. . .. . . ..... . ..... . . . . . . . . .. . . . . . . . ... .. . . . . .. .... . . . . . .... .. ..... . . . . . .... . ...... . .. . .......... .. . . .. . ... . .. . . .... . . . . . . ...... . . . . . . . ... . . .. .... . ... .......... .... . . . . . .. . ....... . . ... . ... . . . . . ............... . ... ............. . . . ....................... ........ . . .. . . . . . . .......... .. ...... . . . ... . .. .. . .......... . . ... .. . . . . ...... .. . ... .... ... . .... ... ... . . . ..... . .. .. ... . .... ... . . .... ...... . .. . . .. . . . ... . . . ........... . . . . ..... .... . . .... . .. . . . . . . . .. . . . ... ............ .. . .. .. .
lowQualScore : 222 0 5 555555555 2 0 2 88 000 0 000 0 0 2 0 2 2 0 0 555 222 0 0 0 55555 0 0 0 0 55555 5 0 88 88 2 5 0 88 0 88 5 2 55555 0 88888 2 2 0 5 2 0 5 2 88 5 6 0 2 8 0 0 000 88 0 0 4 0 00 0000 8 2 2 0 8 2222 00 00000 8 0 6 6 8 0000 0 444444 6 88 0 4444444444 88 0 0 00 0 000 0 00 0 0 0000 2 0 0 5 0 0 888888 0 2 0 0 0 0 0 000 0 0 44 0000 0 000 2222222222 6666 8 8 0 0 0 99 7 6666666 7 0 666 4 111 4 7 1 9 7 666666666666666 7 777 7777777777777 3 7 6 00000000000000000000000 44444444 7 7 22 7 7 5 7 2 3 5555555555 88 333333 7 2 7 111 3 99 99 0 2222222222 7 7 000 99 7 7 6 0 888888 88 0 888 4444 888 7 9999 888 888 1 4 4 44444 4 77 11 444 1 6666 222 4 4 4444 999999 9 55 0 0 99 7 7 7 777 7 7 7 22222222222 0 7 7 7 77777 2222 7 0 2222 3 22 7 6 8 0 8 8 0 00 8 0 0 000 000000000000 44 0 88 00 0
consensus : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----N--A--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
Reference ( family-8953 ) : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----N--A--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|1 : GGATCATAATATTGATAAACAAAATGGCCGTCCGT-GTTGTCTCGGTCTGTTAAAATCCTTCAACTTTATT-AGTTTACTCTTTATTAATCCT-TCTTAAATGCTATGTGTCCATAAGATAGATT-TACATATGGACAAATGACACTAC-GTTTTATAATT-AGATGTGACGGTATATTAATTCTTGT---ACGCTATTGAA-ATAAGTCAG-TTGTATGTA---AGAAAGAGGATGGG-GGAAGTCGAAA-GAGGTTATCACCGAGCTTTA---AAACAAAGGGTT-TACAATTTAGACCATTCAAA-TGGAATCTAGCAGTCCCGATAGTCGCCAGGAGTTTGTGGGACTTAAT-AGGTTGTACAGT-GTGT-GGTTCTGTAATAAATCGATATGTGGAGAGAGGTTCTCGTGGAGAACAAAGCCTCGAACGGTA-GGATTAGAAAAAA-CTAT-GATACGAGACGAGCGATTCAG-TT---TTTTGAGGTTAAGTAAATAACACCACTTCGT----GTAGAGC-TTTGAAAGATATTACCAAAATTA-TTCAATCAGTCTGCAG-AGA--AAA-----TACTGTTTCATGAACTGACAGT-AAAAGGGATTGTTTGTTCCCGTAATAAATA-----ATCACAGACGTGT--GTTAGATAAAGAGGATACGACATCCGCAATTTCGAGTGAGACGAA-CATGAAAAAGCGTTTTGTCGGCATGGGCTAGC-ATGG-GATAAAAAGGACAT-GGAAAGTTGATTATATAC-TGAAAC-GTGT-GATA-TTTTTTGTGGAGGATG-AA-GT-AAGTGCGTTAATATGGATGAAATATAACCGCGTATACATAGT-GTGGCG-AG-GCTGAGGATGA-AAAG---AGT-----AAGGTGTTACCCAGC-TGCATTAGTCCCGGTC-GCGGCGCTTATAAGTCAGCTTGA--T--TTTGGGGGTG-------TATCTGC-TGGAATCGACCAGGTAC--TTTGACCAG-T-TGTTAA-ATGA-AATATAATATGCCCCAG--A--GGA--TACAT-AAATTAAAT---TAATTAGA--ACAATGAATTATGGC--ATTGTTGCCAGGCATTTTTC------------------CCGTACAGAATGAATTATACTCTTTTACAG-ATGATAATTTGCGCTCGG-TGCATCGCGCAGATAAGTGTTCG--TA--AAATATTT--CAAAAATA-----A-CAATAATATTCGT-GAATGCTGTGGCCAGCATTCAA--TCGACACGAT-------G-CTACTTATCTATTGGTAAAAACTTTGT-TG-GTTATGTGTTG------AAAAT-CAGC-TGAAAAAAATTGT----GTTA---AACGAATAGATAATTC-GCGTAGCCGA---CCTCGAACAGAGA-AATTAAG----ATGATATATGGCGA-CTGCGAT---CCCA-ACTCGCACT-ACAAGCTACAATA---CCTT-ATACAATGTCAC-TTCCTTCAGACGAACTGGT-AAGATGCA---TACGATC-GAAAG-GATATTGCCGACATA-----AATA-TAGATAAGTCTTCA-TTGATGTT-CTACATC----CAT-AAAAACTAAATCTACGTTAATTTCGCTGTTTTTTTAAACACGAGTCCGT-TGTTTT--CTAAT-AC-GCGCACGAC-C--T---TTTGTGTTT-------TTATAAGATTTATTGAATTCCAC-CGCTGT
gi|10 : GGCCAGCA--CAA--AGTCTT-GAC-------A-TTAA-TAT-CATTG---AAAA---TATACG-GCTAC-GCCTC-A----AAAGA-AAGC-TAGAGGGG--CGT----GTTG---ATAGGATTGAGAA--C-AAA--GATGA---TCTCTTCC-TTGA-AATTCAC----A-GT-ATCTG--GA-TATCCAT---CACA-C-CT-CAGT-ATG---TCTGGAAAGCT--T-ATACCG-ATCGA-TTCCa
gi|11 : cataaccacgatgagcaACAA-ATC-C-TTCCTC--GA-GAA-TGGT--AGAT-CA---TACGATCCGAAAG-GATA-TGCC-A-G-ATAGTAAATATTAG-TAAGT-TTCA-ATTAT-TTTC-A-ATC----CTA-AAA----AAATC-ACG--AA-TTCGCTG-TTTTTTAAAC-CGGGTCCGTATG-TTT---TAATG-C-GCG-ACGACGCCAT---TTTG----T-------TTATA--A-TTA--GA--TCCACGCGCTGTa
gi|12 : ata-TGCTT-A----AAAAA-CAAC-TCAAAAA---CGA----ACAG---GTCGATTCGATAA--C-GTA--ACCAA---ACTTGAAC-AAGA-AATCAAG----A-GT-ATCTG--GA---GCAAGAAACCC--A-TC-TACT-GCA---TTCAAAAC--C--T-ATACAA-CTCCC-TACTAC--GACAAa
gi|13 : ttgtcGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-ACG--AA-TTCACTGTTTT-TTAAAC-CGAGTCCGTATG-TTT--CTAATGAT-GTG-ACGCCGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|14 : AAAAA--T-C----ACTAGATATTGAAT-GAT------GTT--ATCGA---CCTCAAAC-AATA-AGTTCGC----T-GA-ATATG--GA-CTGCCAT---CCTAGA-TT-C-CT-ATG---CACTAAA------T-ATTCAA-ATGAC-TTCTTac
gi|2 : TGGATCATAATTTT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATGTGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATTTT---CCTTATG--ACGT-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCAAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTTAAAGTGGAATTAAGCAGTCC-GATA-TCACCAGGAGTTTG--GGACTGAATAGG--TGTACAGTTGTGT-G---CTGTAATAAAGCGATATATGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAGATTAAATTT-GAGGTTA-GTAAA-ATC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACTCAAAG-A-TTCAATCCGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTCTGTTCC-GTAATAAATACATGTATCACAAACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGAGAAA-CATGAAAAAGCGT---GT-GACATGGGCTAG--A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AA-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TAGA-GAAA-ATAGCCGCGTATAT---GT-ATGGCGGAG-GCCAGG----A-GAAG---AGT-----G----GTTGCCCCAT-TGCATTAGTCCCAGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAATGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----C--A--AGAGATACAT-AG---AAAT---CA--TAG---GCAATGAATTATGGCCAGTTGTTGCCAGGCATTTTCC------------------T----CAGAATAACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCTCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGAAATGCTGTGGCCAGCA--CAA--TCACCA-GAT-------A-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAACT-CAGC-GGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGA----A-GA-ATATG--GA-CTGTCAT---CCCA-A-TC-CACT-ACA---TACATAA---T--T-AAACAA-GTCAC-TTCCTC--GACAAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-GCG--AA-TTCGCTG-GTTTTTAAAC-AGGGTCCGAATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAGTA-TTA-TGA--TCCAC-CGCTGT
gi|3 : TGGATCATAATA------------ATGGC-GTCCGTTGT-GTC--GGCTCGT-GAA-T--TTCAACTTTTTTTA-TTTAC-CTTT---ATTCCTTCTTTAAATGC-CAGTG---ATAA-A-AGATCATAACTATGGACAAATGACACCACTGTATTATAATTTAGATGTGACGTAATATT---CTTCGTGGGACGC-ACTGAACATACGTCAG--TGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAAAGAT-TTATCACCAAGCTC-ATAAAAACAAAGGGTTGTA-AAT--AG--CTT-CAAAGTGGAAT-AAGCAGTC--GATA-TCGCAGAGAGTTTA--G-ACTAAATTGG--TGTACAGT-GTGTTG---CTGTAATAAAGCGTTATGTGGAGAG-GGTTC-C-TGGAGA-CAA-GCCTC-AACGGGAAGGA--G--AAAAAATTAG-CATGCAA--CGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAT--CGTC---GTAGAGCCTTTGAAAG-TATTACCCAAAGCA-TTCAATCAGTTCA--A-AAATTACA-----TGCTTTTCCA-G-AGTTACAGTTAAAAG----TGTTTGTTCC-GTAATAAATA-------TACCGACGTGT-TGTTAGA-AAA----------CAT-CG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGGTA-GGAAA----AAAGACATTGGAAAGTTGATAATG-ACTTGAAACCGTGTCGATATTTTTCTG------ATGAAATGTAAAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GTGATGGCGGAGAGCCTGG----A-GAAG---AGT-----G----GTTGCCCAGT-GGCATT-GTCCCGGTC-GC-GCGC-TA-AAGTCAGTATGA--TGATTT-GGGTTG-------TATCTGC-T-GAATGGACCAGGTAC--TTTGA-CAGCT-TGTTGA-AT-GTAAT-TAA-GC-C----C--AGTAGA--TACAT-AG---AAAT---CA--TAG---ACAATGAA-TGTGGCCAGTTGTTGCCAGGCATTTCCC------------------T----CAGAATGAC-T-TA-T-TTTCA-AG-A-GATAA--TGCGC-CGGATG-ATCGCGCA-AGAAGTGTTCG--TA--A---ATTT--C-AAAAT------A-C-ATAATATTCGTGGAATGCTGTGGCCAG----CAA--TCACCA-GAT-------GTCTAA-TAT-TATTG---AAAAC--TTA-TGTGTTAT-TGTTG-A----AAAAA-TAGCTTGAAAAAA--TGC----GCTA---ATCGAATAGATAA--TGGCA--GCCGA---CCTCGAAC-GAGACAATTAGG----A-G--ATATG--GACCTG-CAT---CCCA-A--C-CACTAACA---TACAGAA---C--T-ATACAA-ATCACTTTCCTC--GACGAA-T-GTCAAGAT-CA---TACGATC-GGAAGAGATA-TGCC--C--A-----AATATTAGGATAG--TTCA-ATTAT-TT-C-A-ATC----CATAAAA----AAATCAACG--AA-TTCGCTGTCTTTTTAAA--CGGG-CCGTATG-TTTGGCTAATGACGGCG-ACGACGCCATTTGTTTA----TCATATTCTTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|4 : cggCATAATATT-ATAAACAAAATGGC-GTC---------------TCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGATGTAATATT---CCTTGTG--ACAC-ATTGAA-ATACGTCAGTTTGAATGTATAAA-ACAGAGGATGGGTG-AAGTCGAAA-GAT-TTATCACTGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCG-GATA-TCGCCAGGAGTTTG--GGACTGAAT-------------------------------AAGCGGTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCCCGAACTGGAAGGA--AGAAAAAACTTAG-CATACAAGACGAGCGAT-CAG-TT---TT--GAGGTTA-GTAAA-AAC-CCAC--TGT----GTAGAGCCTTTGAAAGATGTTACCCAAAG-A-TTCAATCAGTTCA--G-TGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGCTTGTTCT-GTAATAAATA------TCACAGACGTGT-TGTTAGA-AAAAG--------CATCCG-AATT-CGAG--AGACAAA-CATGAAAAAGCGT---GT-GGCATGGGCTAG--A-GG-AA----AAAGACATTGGAAAAATGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACAGCGTATAT---GT-ATGGCGGAG-GTCTGG----A-GAAG---AGT-----G----GTTGCCCCAA-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGAGGTT-------TATCTGC-TGGAAAGGACCAAGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----GCAG--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATAGCCAGTTGTTGCCAGGCATTTTCC------------------T----AAGAATGACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGGAATGCTGTGGAAAGCA--CAA--TCACCA-GAT-------G-CTAA-TAT-TATTG---AAAGC--TGT-TG-GTTGT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCA--GCCGA---CCTCGAAG-GAGA-AATTAAA----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--TAATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTa
gi|5 : A--TGATTTGGGGTTG-------CAT-TACATGGCACGGAATCGGCACGATTTCAGCAG-T-TG---A-A-GGCAATATTA-AAGA----A--A--ACA--AACCCCAGC--AAAT---TC--TAGTTGACAAT---TTGTAGTCTGTGATAGCTCAACATTTTCCAAACGACCAGTACATATTT----CAGGATGACC---A-TATTTCA-AG-ATAACAA--TGCGC-CTG-TTGACCGTGTA-CGA--TG-C------------ATTCA-CAGAAATGCCATAA-CAACAAT-------GA--GC--TGACCAGCA--GAAAGTCA--A-GAC-------A-TTAA-CAT-AATTG----AAAC--TAT-TG-G------GCTGCACATCAAAATAAAGC-TTCAGGGA--CGC----ATTG---GTAGAATGGAGAA--C-AAG--GACGATATCTTC---C-GTGA-AATTCAT----A-CA-ATTTG--GA-CGGCCA----CGCA-C-TT-CAGT-ATG---TCCAGAGT--C--T-ATATCG-ATCGA-TTCC
gi|6 : ACAATTTTCATGGAATGTTCATGCCAGCA--CAA--TCACCA-GATCCTCTATG-CTAA-TCT-TATTG---AAAAC--TGT-T-----AT-TGTTG-A----AAAAT-CAGC-TGAAAACA--TGCACTAGCTA---ATCAAATAAATGA--T-GCA--GTCGA---TCTCGAAT-GAGA-AATTAGATTGAA-GA-ATATG--GA-C----------CCA-A-TT-CACT-ACA---TACAGAA---C--TTATACAA-GTCTC-CTCCTT--GATGAA-TGGTCAAGAT-TAATTTATGATC-GAAAA-GATA-TGCT-ACA-A-----AATATTAGGTAAGT-TTCATGTTAT-TT-A-G-ATTCATGCAT-ACA----TAATC-ACG--AA-Tgttcg
gi|7 : GT-CAG-GTGATGGT-TGGA-AACA-ATAATCGGATTTAT---AT-TTGGCGGAA-AT-GGG----ACGAAGTCGAGTCCAGAG----ATTGC---GTATGC-CCA--CCTGCTCAGAGG-----A-AACTTTCCATCA--TGATCTGGGGATGCAATACGTATC-AC-GGCGTAGGAACAATCAC-----GA-CAG-TATA-TGGCACGATAA-ATAG-ACAC----A--A--A----TACAT-TG---AAATACTCG--AGG---ACAAT---TTATGGCCAGTGATCGCACGGCATTTTCCGGA---------------G----CAGGATTGCT-----TGTTTCA-AG-ATGA
gi|8 : aaAGAAAATTGGACATTAAAAACGAGCG-T-CAG-CT---ATT-ATGGCTT-GTAAA-ATC-TTAC--CGTACCTGCGACTCCATTGAAAGACATAAC--AGGACAATTTAATCAA---G--GTAGG--AAAGTTCCT-CTGTCTGA-ACAAT--CAATTCATTGT---TATTTGTCAA-AAAATAAATA------TCATCGACATGTGTGCAGGA-AGAAA----AT--TA---G-GATT-CAGG--A-ACAAAACAGGAAAAATCGT---GT-GGCATGGGGGAGG-A-GG-GA----AATGA
gi|9 : CATGAGTTGATT-----GTG-------TATTTGC-TGGAAAGATCCAAAGAC--ATTAA-TGG-A-TA-TAA-ATGGAATTATAA-ATGC----T-----------------G---AAAT---T-----G---ACAATGAGTTATAGCCATTTGTCCCTTAGCA-TTTCC------------------C----CAAAATAATCT------TTTTA-AGAATGACAA--TGTTT-GTG-TGCATCGAGC----ACGTA-TCGCCCAGCA---GTTTACTAAAAAAA-----ACCCACAACATTT-----ATGCT-----CAGAG--CAG--TTACCA-GAT-------G-tcaacgatggactgttg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGATGACCAGTGTTCCGTGAAATACAATTGGATTCGTATCACACCTGAGTATGTTTTAAAAATGCCTATACCGCTAGATTCCC
Unaligned ( gi|16 ): AGATTGATGTGGTTTGAAAGAAAATCGTATACCATATA
Alignments
lowQualScore : 111 1 111111111 1 11 111 1 111 1 1 1 1 1 111 111 1 1 1 11111 1 1 1 1 11111 1 11 11 11 1 11 33333 1 22222 1 1 11 111 11 2222 1 1111 11 22222 2222 444444 3333333333 11 111 22 1111 1 1 1 1 222222 1 111 1111 111 3333333333 1111111 1 1 333333333333333 111 1111111111111 66666666666666666666666 22222222 1 1111111111 11 222222 1111111111 111 111111 11111 222222 111 22222222222 1111 1111 1 1 11 111 333333333333 11
lowQualScore : 000 0 2 666666666 0 0 3 33 111 0 777 0 0 3 0 3 3 0 0 777 666 0 0 9 88888 0 0 0 0 88888 2 0 33 33 3 2 7 88 0 33 2 0 66666 0 33333 1 3 0 2 3 0 2 3 33 2 5 8 3 0 8 8 444 88 8 8 1 8 11 5555 0 3 3 8 0 2222 11 00000 3 8 5 5 0 3333 8 000000 0 88 8 9999999999 55 8 8 11 8 444 8 33 8 8 7777 3 0 0 2 0 0 888888 0 3 8 8 8 8 8 444 8 8 66 7777 8 444 0000000000 8888 0 0 8 8 8 77 0 8888888 5 1 999 1 666 1 5 0 3 5 555555555555555 5 555 8888888888888 4 2 1 33333333333333333333333 44444444 5 5 99 6 6 2 6 3 3 7777777777 55 000000 6 3 1 555 4 66 66 5 9999999999 5 5 000 77 5 5 3 5 222222 55 5 666 9999 777 3 6666 777 777 0 4 4 00000 4 66 66 666 0 9999 555 4 4 8888 111111 8 44 8 4 77 6 6 6 111 6 6 6 22222222222 1 6 6 6 77777 4444 6 1 4444 3 99 6 0 0 8 0 0 8 11 0 8 8 444 444444444444 44 8 88 11 8
lowQualScore : ... . . ......... . . . .. ... . ... . . . . . . . . ... ... . . . ..... . . . . ..... . . .. .. . . . .. . .. . . ..... . ..... . . . . . . . . .. . . . . . . . ... .. . . . . .. .... . . . . . .... .. ..... . . . . . .... . ...... . .. . .......... .. . . .. . ... . .. . . .... . . . . . . ...... . . . . . . . ... . . .. .... . ... .......... .... . . . . . .. . ....... . . ... . ... . . . . . ............... . ... ............. . . . ....................... ........ . . .. . . . . . . .......... .. ...... . . . ... . .. .. . .......... . . ... .. . . . . ...... .. . ... .... ... . .... ... ... . . . ..... . .. .. ... . .... ... . . .... ...... . .. . . .. . . . ... . . . ........... . . . . ..... .... . . .... . .. . . . . . . . .. . . . ... ............ .. . .. .. .
lowQualScore : 222 0 5 555555555 2 0 2 88 000 0 000 0 0 2 0 2 2 0 0 555 222 0 0 0 55555 0 0 0 0 55555 5 0 88 88 2 5 0 88 0 88 5 2 55555 0 88888 2 2 0 5 2 0 5 2 88 5 6 0 2 8 0 0 000 88 0 0 4 0 00 0000 8 2 2 0 8 2222 00 00000 8 0 6 6 8 0000 0 444444 6 88 0 4444444444 88 0 0 00 0 000 0 00 0 0 0000 2 0 0 5 0 0 888888 0 2 0 0 0 0 0 000 0 0 44 0000 0 000 2222222222 6666 8 8 0 0 0 99 7 6666666 7 0 666 4 111 4 7 1 9 7 666666666666666 7 777 7777777777777 3 7 6 00000000000000000000000 44444444 7 7 22 7 7 5 7 2 3 5555555555 88 333333 7 2 7 111 3 99 99 0 2222222222 7 7 000 99 7 7 6 0 888888 88 0 888 4444 888 7 9999 888 888 1 4 4 44444 4 77 11 444 1 6666 222 4 4 4444 999999 9 55 0 0 99 7 7 7 777 7 7 7 22222222222 0 7 7 7 77777 2222 7 0 2222 3 22 7 6 8 0 8 8 0 00 8 0 0 000 000000000000 44 0 88 00 0
consensus : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----N--A--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
Reference ( family-8953 ) : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----N--A--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|1 : GGATCATAATATTGATAAACAAAATGGCCGTCCGT-GTTGTCTCGGTCTGTTAAAATCCTTCAACTTTATT-AGTTTACTCTTTATTAATCCT-TCTTAAATGCTATGTGTCCATAAGATAGATT-TACATATGGACAAATGACACTAC-GTTTTATAATT-AGATGTGACGGTATATTAATTCTTGT---ACGCTATTGAA-ATAAGTCAG-TTGTATGTA---AGAAAGAGGATGGG-GGAAGTCGAAA-GAGGTTATCACCGAGCTTTA---AAACAAAGGGTT-TACAATTTAGACCATTCAAA-TGGAATCTAGCAGTCCCGATAGTCGCCAGGAGTTTGTGGGACTTAAT-AGGTTGTACAGT-GTGT-GGTTCTGTAATAAATCGATATGTGGAGAGAGGTTCTCGTGGAGAACAAAGCCTCGAACGGTA-GGATTAGAAAAAA-CTAT-GATACGAGACGAGCGATTCAG-TT---TTTTGAGGTTAAGTAAATAACACCACTTCGT----GTAGAGC-TTTGAAAGATATTACCAAAATTA-TTCAATCAGTCTGCAG-AGA--AAA-----TACTGTTTCATGAACTGACAGT-AAAAGGGATTGTTTGTTCCCGTAATAAATA-----ATCACAGACGTGT--GTTAGATAAAGAGGATACGACATCCGCAATTTCGAGTGAGACGAA-CATGAAAAAGCGTTTTGTCGGCATGGGCTAGC-ATGG-GATAAAAAGGACAT-GGAAAGTTGATTATATAC-TGAAAC-GTGT-GATA-TTTTTTGTGGAGGATG-AA-GT-AAGTGCGTTAATATGGATGAAATATAACCGCGTATACATAGT-GTGGCG-AG-GCTGAGGATGA-AAAG---AGT-----AAGGTGTTACCCAGC-TGCATTAGTCCCGGTC-GCGGCGCTTATAAGTCAGCTTGA--T--TTTGGGGGTG-------TATCTGC-TGGAATCGACCAGGTAC--TTTGACCAG-T-TGTTAA-ATGA-AATATAATATGCCCCAG--A--GGA--TACAT-AAATTAAAT---TAATTAGA--ACAATGAATTATGGC--ATTGTTGCCAGGCATTTTTC------------------CCGTACAGAATGAATTATACTCTTTTACAG-ATGATAATTTGCGCTCGG-TGCATCGCGCAGATAAGTGTTCG--TA--AAATATTT--CAAAAATA-----A-CAATAATATTCGT-GAATGCTGTGGCCAGCATTCAA--TCGACACGAT-------G-CTACTTATCTATTGGTAAAAACTTTGT-TG-GTTATGTGTTG------AAAAT-CAGC-TGAAAAAAATTGT----GTTA---AACGAATAGATAATTC-GCGTAGCCGA---CCTCGAACAGAGA-AATTAAG----ATGATATATGGCGA-CTGCGAT---CCCA-ACTCGCACT-ACAAGCTACAATA---CCTT-ATACAATGTCAC-TTCCTTCAGACGAACTGGT-AAGATGCA---TACGATC-GAAAG-GATATTGCCGACATA-----AATA-TAGATAAGTCTTCA-TTGATGTT-CTACATC----CAT-AAAAACTAAATCTACGTTAATTTCGCTGTTTTTTTAAACACGAGTCCGT-TGTTTT--CTAAT-AC-GCGCACGAC-C--T---TTTGTGTTT-------TTATAAGATTTATTGAATTCCAC-CGCTGT
gi|10 : GGCCAGCA--CAA--AGTCTT-GAC-------A-TTAA-TAT-CATTG---AAAA---TATACG-GCTAC-GCCTC-A----AAAGA-AAGC-TAGAGGGG--CGT----GTTG---ATAGGATTGAGAA--C-AAA--GATGA---TCTCTTCC-TTGA-AATTCAC----A-GT-ATCTG--GA-TATCCAT---CACA-C-CT-CAGT-ATG---TCTGGAAAGCT--T-ATACCG-ATCGA-TTCCa
gi|11 : cataaccacgatgagcaACAA-ATC-C-TTCCTC--GA-GAA-TGGT--AGAT-CA---TACGATCCGAAAG-GATA-TGCC-A-G-ATAGTAAATATTAG-TAAGT-TTCA-ATTAT-TTTC-A-ATC----CTA-AAA----AAATC-ACG--AA-TTCGCTG-TTTTTTAAAC-CGGGTCCGTATG-TTT---TAATG-C-GCG-ACGACGCCAT---TTTG----T-------TTATA--A-TTA--GA--TCCACGCGCTGTa
gi|12 : ata-TGCTT-A----AAAAA-CAAC-TCAAAAA---CGA----ACAG---GTCGATTCGATAA--C-GTA--ACCAA---ACTTGAAC-AAGA-AATCAAG----A-GT-ATCTG--GA---GCAAGAAACCC--A-TC-TACT-GCA---TTCAAAAC--C--T-ATACAA-CTCCC-TACTAC--GACAAa
gi|13 : ttgtcGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-ACG--AA-TTCACTGTTTT-TTAAAC-CGAGTCCGTATG-TTT--CTAATGAT-GTG-ACGCCGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|14 : AAAAA--T-C----ACTAGATATTGAAT-GAT------GTT--ATCGA---CCTCAAAC-AATA-AGTTCGC----T-GA-ATATG--GA-CTGCCAT---CCTAGA-TT-C-CT-ATG---CACTAAA------T-ATTCAA-ATGAC-TTCTTac
gi|2 : TGGATCATAATTTT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATGTGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATTTT---CCTTATG--ACGT-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCAAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTTAAAGTGGAATTAAGCAGTCC-GATA-TCACCAGGAGTTTG--GGACTGAATAGG--TGTACAGTTGTGT-G---CTGTAATAAAGCGATATATGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAGATTAAATTT-GAGGTTA-GTAAA-ATC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACTCAAAG-A-TTCAATCCGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTCTGTTCC-GTAATAAATACATGTATCACAAACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGAGAAA-CATGAAAAAGCGT---GT-GACATGGGCTAG--A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AA-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TAGA-GAAA-ATAGCCGCGTATAT---GT-ATGGCGGAG-GCCAGG----A-GAAG---AGT-----G----GTTGCCCCAT-TGCATTAGTCCCAGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAATGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----C--A--AGAGATACAT-AG---AAAT---CA--TAG---GCAATGAATTATGGCCAGTTGTTGCCAGGCATTTTCC------------------T----CAGAATAACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCTCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGAAATGCTGTGGCCAGCA--CAA--TCACCA-GAT-------A-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAACT-CAGC-GGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGA----A-GA-ATATG--GA-CTGTCAT---CCCA-A-TC-CACT-ACA---TACATAA---T--T-AAACAA-GTCAC-TTCCTC--GACAAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-GCG--AA-TTCGCTG-GTTTTTAAAC-AGGGTCCGAATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAGTA-TTA-TGA--TCCAC-CGCTGT
gi|3 : TGGATCATAATA------------ATGGC-GTCCGTTGT-GTC--GGCTCGT-GAA-T--TTCAACTTTTTTTA-TTTAC-CTTT---ATTCCTTCTTTAAATGC-CAGTG---ATAA-A-AGATCATAACTATGGACAAATGACACCACTGTATTATAATTTAGATGTGACGTAATATT---CTTCGTGGGACGC-ACTGAACATACGTCAG--TGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAAAGAT-TTATCACCAAGCTC-ATAAAAACAAAGGGTTGTA-AAT--AG--CTT-CAAAGTGGAAT-AAGCAGTC--GATA-TCGCAGAGAGTTTA--G-ACTAAATTGG--TGTACAGT-GTGTTG---CTGTAATAAAGCGTTATGTGGAGAG-GGTTC-C-TGGAGA-CAA-GCCTC-AACGGGAAGGA--G--AAAAAATTAG-CATGCAA--CGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAT--CGTC---GTAGAGCCTTTGAAAG-TATTACCCAAAGCA-TTCAATCAGTTCA--A-AAATTACA-----TGCTTTTCCA-G-AGTTACAGTTAAAAG----TGTTTGTTCC-GTAATAAATA-------TACCGACGTGT-TGTTAGA-AAA----------CAT-CG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGGTA-GGAAA----AAAGACATTGGAAAGTTGATAATG-ACTTGAAACCGTGTCGATATTTTTCTG------ATGAAATGTAAAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GTGATGGCGGAGAGCCTGG----A-GAAG---AGT-----G----GTTGCCCAGT-GGCATT-GTCCCGGTC-GC-GCGC-TA-AAGTCAGTATGA--TGATTT-GGGTTG-------TATCTGC-T-GAATGGACCAGGTAC--TTTGA-CAGCT-TGTTGA-AT-GTAAT-TAA-GC-C----C--AGTAGA--TACAT-AG---AAAT---CA--TAG---ACAATGAA-TGTGGCCAGTTGTTGCCAGGCATTTCCC------------------T----CAGAATGAC-T-TA-T-TTTCA-AG-A-GATAA--TGCGC-CGGATG-ATCGCGCA-AGAAGTGTTCG--TA--A---ATTT--C-AAAAT------A-C-ATAATATTCGTGGAATGCTGTGGCCAG----CAA--TCACCA-GAT-------GTCTAA-TAT-TATTG---AAAAC--TTA-TGTGTTAT-TGTTG-A----AAAAA-TAGCTTGAAAAAA--TGC----GCTA---ATCGAATAGATAA--TGGCA--GCCGA---CCTCGAAC-GAGACAATTAGG----A-G--ATATG--GACCTG-CAT---CCCA-A--C-CACTAACA---TACAGAA---C--T-ATACAA-ATCACTTTCCTC--GACGAA-T-GTCAAGAT-CA---TACGATC-GGAAGAGATA-TGCC--C--A-----AATATTAGGATAG--TTCA-ATTAT-TT-C-A-ATC----CATAAAA----AAATCAACG--AA-TTCGCTGTCTTTTTAAA--CGGG-CCGTATG-TTTGGCTAATGACGGCG-ACGACGCCATTTGTTTA----TCATATTCTTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|4 : cggCATAATATT-ATAAACAAAATGGC-GTC---------------TCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGATGTAATATT---CCTTGTG--ACAC-ATTGAA-ATACGTCAGTTTGAATGTATAAA-ACAGAGGATGGGTG-AAGTCGAAA-GAT-TTATCACTGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCG-GATA-TCGCCAGGAGTTTG--GGACTGAAT-------------------------------AAGCGGTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCCCGAACTGGAAGGA--AGAAAAAACTTAG-CATACAAGACGAGCGAT-CAG-TT---TT--GAGGTTA-GTAAA-AAC-CCAC--TGT----GTAGAGCCTTTGAAAGATGTTACCCAAAG-A-TTCAATCAGTTCA--G-TGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGCTTGTTCT-GTAATAAATA------TCACAGACGTGT-TGTTAGA-AAAAG--------CATCCG-AATT-CGAG--AGACAAA-CATGAAAAAGCGT---GT-GGCATGGGCTAG--A-GG-AA----AAAGACATTGGAAAAATGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACAGCGTATAT---GT-ATGGCGGAG-GTCTGG----A-GAAG---AGT-----G----GTTGCCCCAA-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGAGGTT-------TATCTGC-TGGAAAGGACCAAGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----GCAG--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATAGCCAGTTGTTGCCAGGCATTTTCC------------------T----AAGAATGACTT-TA-TTTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGGAATGCTGTGGAAAGCA--CAA--TCACCA-GAT-------G-CTAA-TAT-TATTG---AAAGC--TGT-TG-GTTGT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA--C-GCA--GCCGA---CCTCGAAG-GAGA-AATTAAA----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--TAATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTa
gi|5 : A--TGATTTGGGGTTG-------CAT-TACATGGCACGGAATCGGCACGATTTCAGCAG-T-TG---A-A-GGCAATATTA-AAGA----A--A--ACA--AACCCCAGC--AAAT---TC--TAGTTGACAAT---TTGTAGTCTGTGATAGCTCAACATTTTCCAAACGACCAGTACATATTT----CAGGATGACC---A-TATTTCA-AG-ATAACAA--TGCGC-CTG-TTGACCGTGTA-CGA--TG-C------------ATTCA-CAGAAATGCCATAA-CAACAAT-------GA--GC--TGACCAGCA--GAAAGTCA--A-GAC-------A-TTAA-CAT-AATTG----AAAC--TAT-TG-G------GCTGCACATCAAAATAAAGC-TTCAGGGA--CGC----ATTG---GTAGAATGGAGAA--C-AAG--GACGATATCTTC---C-GTGA-AATTCAT----A-CA-ATTTG--GA-CGGCCA----CGCA-C-TT-CAGT-ATG---TCCAGAGT--C--T-ATATCG-ATCGA-TTCC
gi|6 : ACAATTTTCATGGAATGTTCATGCCAGCA--CAA--TCACCA-GATCCTCTATG-CTAA-TCT-TATTG---AAAAC--TGT-T-----AT-TGTTG-A----AAAAT-CAGC-TGAAAACA--TGCACTAGCTA---ATCAAATAAATGA--T-GCA--GTCGA---TCTCGAAT-GAGA-AATTAGATTGAA-GA-ATATG--GA-C----------CCA-A-TT-CACT-ACA---TACAGAA---C--TTATACAA-GTCTC-CTCCTT--GATGAA-TGGTCAAGAT-TAATTTATGATC-GAAAA-GATA-TGCT-ACA-A-----AATATTAGGTAAGT-TTCATGTTAT-TT-A-G-ATTCATGCAT-ACA----TAATC-ACG--AA-Tgttcg
gi|7 : GT-CAG-GTGATGGT-TGGA-AACA-ATAATCGGATTTAT---AT-TTGGCGGAA-AT-GGG----ACGAAGTCGAGTCCAGAG----ATTGC---GTATGC-CCA--CCTGCTCAGAGG-----A-AACTTTCCATCA--TGATCTGGGGATGCAATACGTATC-AC-GGCGTAGGAACAATCAC-----GA-CAG-TATA-TGGCACGATAA-ATAG-ACAC----A--A--A----TACAT-TG---AAATACTCG--AGG---ACAAT---TTATGGCCAGTGATCGCACGGCATTTTCCGGA---------------G----CAGGATTGCT-----TGTTTCA-AG-ATGA
gi|8 : aaAGAAAATTGGACATTAAAAACGAGCG-T-CAG-CT---ATT-ATGGCTT-GTAAA-ATC-TTAC--CGTACCTGCGACTCCATTGAAAGACATAAC--AGGACAATTTAATCAA---G--GTAGG--AAAGTTCCT-CTGTCTGA-ACAAT--CAATTCATTGT---TATTTGTCAA-AAAATAAATA------TCATCGACATGTGTGCAGGA-AGAAA----AT--TA---G-GATT-CAGG--A-ACAAAACAGGAAAAATCGT---GT-GGCATGGGGGAGG-A-GG-GA----AATGA
gi|9 : CATGAGTTGATT-----GTG-------TATTTGC-TGGAAAGATCCAAAGAC--ATTAA-TGG-A-TA-TAA-ATGGAATTATAA-ATGC----T-----------------G---AAAT---T-----G---ACAATGAGTTATAGCCATTTGTCCCTTAGCA-TTTCC------------------C----CAAAATAATCT------TTTTA-AGAATGACAA--TGTTT-GTG-TGCATCGAGC----ACGTA-TCGCCCAGCA---GTTTACTAAAAAAA-----ACCCACAACATTT-----ATGCT-----CAGAG--CAG--TTACCA-GAT-------G-tcaacgatggactgttg
blockSeqs : TT . C TGTGTC . A . TA . T T . T . T A T T . GGG . C C TAAA T . A . ATAA G . . . T G T C . . G AGG T TG A A . G A . G A . G A A G . A AAA T . . T . . ACCT T C A GT TT GTTCC A . A T A . CATGTA GT . AAAC TC . . . A . . GT . A . T . T C C T . A T A . . . . . G A CA . C TCG CCAGAG CAT A . . GT CAATACG A T GAT G CT T C T . CAAGAGA C C TCTAGTTG G T A AAACGACCAGTACATATTT TTTATT . A . . A C . A T CCCAGCA AC GCCATA C A A GTG G . AG . TCCTCTATG . . . . A T C . CACATC TA T C ACTA GAT T TG A TAT . C ATTGA . T . CCT GAAA GA . A G AGCT A A G T . . C . ATT C A . AGATAGTA G . T . TCA CATG A A . A . . T . . GG G . TTG TCATATTC AT . T . G
blockSeqs : TT . C GTGTC . A . A . T . . T . T A . . . G . . T A . . . . A G . . . T G T G . . G TGG . G T A . G A . G A . G A . G . . . T . . A . . C C C . G . . G . A T A . . T . AAAT TC . . . . . . G . . . T . . C . . . . T . . . . . . . . CT . . . G AGT . . . . . . T T . TA . . T . CAGTAGA . . ACTCGAGG G T A GGAG TTTATT . . . . . C . A . TAA A G . A A GTG G . . . TGT . . . . . . T . A A . C . . C C A . . . C . T . TA T C . . A CC T A C . . . C . . . . . ACGA G . . . CA . . C . . . . T . . . . . . T GT . T . .
blockSeqs : . . . . . . . A . . . . . . . A . . . G . . . A . . . . A G . . . . G . . . . . . . . G . . . . . . A . . C . A . . . T . . A . . . C . . A . . A . C T T . . T . AG T . . . . . . . . . . T . . C . . . . T . . . . . . . . CT . . . G CAA . . . . . . A T . T . . T . GCAGAGA . . CATAG G T A T TTAT . . . . . G . A . TAA . G . A A GTG G . . . CA . . . . . . T . A A . T . . A C T . . . G . A . CT T A . . G TC . C A . . . C . . . . . ACGA G . . . CA . . C . . . . . . . . . . . T AT . T . .
blockSeqs : A . . . . . . . . T . . . . . . G . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . G . . . G GTA . . . . . . C T . T . . C . AAACA . . CATAG G A C T CATA . . . . . C . C . TAA . A . C T ATG C . . . TA . . . . . . T . A T . T . . A C G . . . C . A . CT T A . . A T . A A . . . C . . . . . ACAA G . . . CA . . A . . . . . . . . . . . T . . . . .
blockSeqs : . . . A A . T . . T . AAA . . CATAG . C C T TTG . . . . . . . . . . . . . . A . . . . . TG . . . . . . . . A A . T . . A C A . . . A . A . CT T A . . A C . G A . . . . . . . . . CA . . . . AG . . C . . . .
blockSeqs : . . . A . . A . . A . T . . TG . C T C CT . . . . . . . . CA . . . . . . . . A T . T . . G C A . . . G . A . CG T A . . A C . A A . .
blockSeqs : . . . TG . A T . C . . A T G . . . A . A . C . C . . G C . G G .
blockSeqs : T . . . . A . . . T . . . . . A . . A . . A T .
blockSeqs : G . .
blockSeqCons : T* ** G*** A*** ****** T* AG******** ** *** G* **** *** **** G********* AAGA*********** *** CGTAG******** T********************** TTATT*** ** TAA******* GTG ** *** ** A***** T** C*** A** A* ** A** A*** C***** A* ** ACGA******* CA*** **** ** T*********** T* **
originalCons : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA-----ATCACAGACGTGT-TGTTAGA-AAAAA----AC--CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC----N--A--AGA--TACAT-AG---AAAT---CA--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-TA-TNTTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA--C-GCG--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
finalCons : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCGG---AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA------TCACAGACGTGTT-GTTAGA-AAAAG--------CATCCG-AATT-CGAG--AGACGAA-CATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGTG---------GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGCAAGA-----------TACAT-AG---AAATCGTAG--------ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCCT----------------------CAGAATGACTTATT---TTTCA-AG-ATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCGTAA-------ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTGA-----AAAAT-CAGC-TGAAAAAAT--GC----GCTA---ATCGAATAGATAAC---GCA--GCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCAA--TC-CACT-ACA---TACAGAAC-----T-ATACAAA-TCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCCACGA-------AATATTAGGTAAGT-TTCA-ATTAT-TTCA---ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTGT-----------TTATAATA-TTAT-GA--TCCAC-CGCTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGATGACCAGTGTTCCGTGAAATACAATTGGATTCGTATCACACCTGAGTATGTTTTAAAAATGCCTATACCGCTAGATTCCC
Unaligned ( gi|16 ): AGATTGATGTGGTTTGAAAGAAAATCGTATACCATATA
Alignments
lowQualScore : 111 1 111111111 1 11 111 1 111 1 1 1 1 1 111 111 1 1 1 11111 1 1 1 1 11111 1 11 11 11 1 11 33333 1 22222 1 1 11 111 11 2222 1 1111 11 22222 2222 333333 44444444444 11 111 22 1111 1 1 1 1 222222 1 111 1111 111 3333333333 1111111 1 1 444444444 111 111 2222222222222 66666666666666666666666 2222222 1 1111111111 11 222222 1111111111 111 111111 111111 11111 222222 111 22222222222 1111 1111 1 1 11 111 333333333333 11
lowQualScore : 000 0 2 666666666 0 0 3 33 111 0 777 0 0 3 0 3 3 0 0 777 666 0 0 9 88888 0 0 0 0 88888 2 0 33 33 3 2 7 88 0 33 2 0 66666 0 33333 1 3 0 2 3 0 2 3 33 2 5 8 3 0 8 8 444 88 8 8 1 8 11 5555 0 3 3 8 0 2222 11 00000 3 8 5 5 0 3333 8 111111 0 11 8 55555555555 3 8 8 11 8 444 8 33 8 8 7777 3 0 0 2 0 0 888888 0 3 8 8 8 8 8 444 8 8 66 7777 8 444 0000000000 8888 0 0 8 8 8 77 0 8888888 5 1 999 1 666 1 5 0 3 5 444444444 3 000 1 555 5555555555555 4 2 1 77777777777777777777777 0 5555555 99 6 6 2 6 3 3 7777777777 55 000000 6 3 1 555 4 66 66 5 9999999999 5 5 000 77 5 5 3 5 222222 55 5 66 9999 777 3 000000 0 777 0 4 4 00000 4 66 66 666 0 9999 555 4 4 777 111111 8 4 8 4 77 6 6 6 111 6 6 6 22222222222 1 6 6 6 77777 4444 6 1 4444 3 99 6 0 0 8 0 0 8 11 0 8 8 444 444444444444 44 8 88 11 8
lowQualScore : ... . . ......... . . . .. ... . ... . . . . . . . . ... ... . . . ..... . . . . ..... . . .. .. . . . .. . .. . . ..... . ..... . . . . . . . . .. . . . . . . . ... .. . . . . .. .... . . . . . .... .. ..... . . . . . .... . ...... . .. . ........... . . . .. . ... . .. . . .... . . . . . . ...... . . . . . . . ... . . .. .... . ... .......... .... . . . . . .. . ....... . . ... . ... . . . . . ......... . ... . ... ............. . . . ....................... . ....... .. . . . . . . .......... .. ...... . . . ... . .. .. . .......... . . ... .. . . . . ...... .. . .. .... ... . ...... . ... . . . ..... . .. .. ... . .... ... . . ... ...... . . . . .. . . . ... . . . ........... . . . . ..... .... . . .... . .. . . . . . . . .. . . . ... ............ .. . .. .. .
lowQualScore : 222 0 5 555555555 2 0 2 88 000 0 000 0 0 2 0 2 2 0 0 555 222 0 0 0 55555 0 0 0 0 55555 5 0 88 88 2 5 0 88 0 88 5 2 55555 0 88888 2 2 0 5 2 0 5 2 88 5 6 0 2 8 0 0 000 88 0 0 4 0 00 0000 8 2 2 0 8 2222 00 00000 8 0 6 6 8 0000 0 000000 6 66 0 22222222222 2 0 0 00 0 000 0 00 0 0 0000 2 0 0 5 0 0 888888 0 2 0 0 0 0 0 000 0 0 44 0000 0 000 2222222222 6666 8 8 0 0 0 99 7 6666666 7 0 666 4 111 4 7 1 9 7 444444444 0 000 7 777 0000000000000 3 7 6 99999999999999999999999 7 1111111 22 7 7 5 7 2 3 5555555555 88 333333 7 2 7 111 3 99 99 0 2222222222 7 7 000 99 7 7 6 0 888888 88 0 11 4444 888 7 222222 9 888 1 4 4 44444 4 77 11 444 1 6666 222 4 4 888 999999 9 0 0 0 99 7 7 7 777 7 7 7 22222222222 0 7 7 7 77777 2222 7 0 2222 3 22 7 6 8 0 8 8 0 00 8 0 0 000 000000000000 44 0 88 00 0
consensus : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA------TCACAGACGTGTTGT-TAGAAAAAGA--------CATCCG-AATT-CGAG--AGAC-GAACATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC-----G---AGATA---CATAG---AAAT---CG--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-AT----TTTTCAAGATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--CGC----GCTA---ATCGAATAGATAA----C-GCAGCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACG---TACAGAA---C--T-ATACAA-GTCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
Reference ( family-8953 ) : TGGATCATAATATT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATATT---CCTTGTG--ACGC-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCC-GATA-TCGCCAGGAGTTTG--GGACTGAAT-GG--TGTACAGT-GTGT-G---CTGTAATAAAGCGATATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACCCAAAGCA-TTCAATCAGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTTTGTTCC-GTAATAAATA------TCACAGACGTGTTGT-TAGAAAAAG---------CATCCG-AATT-CGAG--AGAC-GAACATGAAAAAGCGT---GT-GGCATGGGCTAGG-A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GT-ATGGCGGAG-GCCGGG----A-GAAG---AGT-----G----GTTGCCCCGT-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAANGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC-----A---AGATA---CATAG---AAAT---CG--TAG---ACAATGAATTATGGCCAGTTGTCGCCAGGCATTTTCC------------------T----CAGAATGACTT-AT----TTTTCAAGATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAACAATATTCGTGGAATGCTGTGGCCAGCA--CAA--TCACCA-GAC-------G-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA----C-GCAGCCGA---CCTCGAAC-GAGA-AATTAGN----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--T-ATACAA-ATCGC-TTCCTC--GACGAA-TGGTCAAGAT-CA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ANA----AAATC-ACG--AA-TTCGCTGTTTTTTTAAAC-CGGGTCCGTATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|1 : GGATCATAATATTGATAAACAAAATGGCCGTCCGT-GTTGTCTCGGTCTGTTAAAATCCTTCAACTTTATT-AGTTTACTCTTTATTAATCCT-TCTTAAATGCTATGTGTCCATAAGATAGATT-TACATATGGACAAATGACACTAC-GTTTTATAATT-AGATGTGACGGTATATTAATTCTTGT---ACGCTATTGAA-ATAAGTCAG-TTGTATGTA---AGAAAGAGGATGGG-GGAAGTCGAAA-GAGGTTATCACCGAGCTTTA---AAACAAAGGGTT-TACAATTTAGACCATTCAAA-TGGAATCTAGCAGTCCCGATAGTCGCCAGGAGTTTGTGGGACTTAAT-AGGTTGTACAGT-GTGT-GGTTCTGTAATAAATCGATATGTGGAGAGAGGTTCTCGTGGAGAACAAAGCCTCGAACGGTA-GGATTAGAAAAAA-CTAT-GATACGAGACGAGCGATTCAG-TT---TTTTGAGGTTAAGTAAATAACACCACTTCGT----GTAGAGC-TTTGAAAGATATTACCAAAATTA-TTCAATCAGTCTGCAG-AGA--AAA-----TACTGTTTCATGAACTGACAGT-AAAAGGGATTGTTTGTTCCCGTAATAAATAA-----TCACAGACGTGT-GT-TAGATAAAGAGGATACGACATCCGCAATTTCGAGTGAGAC-GAACATGAAAAAGCGTTTTGTCGGCATGGGCTAGC-ATGG-GATAAAAAGGACAT-GGAAAGTTGATTATATAC-TGAAAC-GTGT-GATA-TTTTTTGTGGAGGATG-AA-GT-AAGTGCGTTAATATGGATGAAATATAACCGCGTATACATAGT-GTGGCG-AG-GCTGAGGATGA-AAAG---AGT-----AAGGTGTTACCCAGC-TGCATTAGTCCCGGTC-GCGGCGCTTATAAGTCAGCTTGA--T--TTTGGGGGTG-------TATCTGC-TGGAATCGACCAGGTAC--TTTGACCAG-T-TGTTAA-ATGA-AATATAATATGCCCCAGA---GGATA---CATAAATTAAAT---TAATTAGA--ACAATGAATTATGGC--ATTGTTGCCAGGCATTTTTC------------------CCGTACAGAATGAATT-ATACTCTTTTACAGATGATAATTTGCGCTCGG-TGCATCGCGCAGATAAGTGTTCG--TA--AAATATTT--CAAAAATA-----A-CAATAATATTCGT-GAATGCTGTGGCCAGCATTCAA--TCGACACGAT-------G-CTACTTATCTATTGGTAAAAACTTTGT-TG-GTTATGTGTTG------AAAAT-CAGC-TGAAAAAAATTGT----GTTA---AACGAATAGATAATTCGC-GTAGCCGA---CCTCGAACAGAGA-AATTAAG----ATGATATATGGCGA-CTGCGAT---CCCA-ACTCGCACT-ACAAGCTACAATA---CCTT-ATACAATGTCAC-TTCCTTCAGACGAACTGGT-AAGATGCA---TACGATC-GAAAG-GATATTGCCGACATA-----AATA-TAGATAAGTCTTCA-TTGATGTT-CTACATC----CAT-AAAAACTAAATCTACGTTAATTTCGCTGTTTTTTTAAACACGAGTCCGT-TGTTTT--CTAAT-AC-GCGCACGAC-C--T---TTTGTGTTT-------TTATAAGATTTATTGAATTCCAC-CGCTGT
gi|10 : GGCCAGCA--CAA--AGTCTT-GAC-------A-TTAA-TAT-CATTG---AAAA---TATACG-GCTAC-GCCTC-A----AAAGA-AAGC-TAGAGGGG--CGT----GTTG---ATAGGATTGAGAA----C-AAAGATGA---TCTCTTCC-TTGA-AATTCAC----A-GT-ATCTG--GA-TATCCAT---CACA-C-CT-CAGT-ATG---TCTGGAAAGCT--T-ATACCG-ATCGA-TTCCa
gi|11 : cataaccacgatgagcaACAA-ATC-C-TTCCTC--GA-GAA-TGGT--AGAT-CA---TACGATCCGAAAG-GATA-TGCC-A-G-ATAGTAAATATTAG-TAAGT-TTCA-ATTAT-TTTC-A-ATC----CTA-AAA----AAATC-ACG--AA-TTCGCTG-TTTTTTAAAC-CGGGTCCGTATG-TTT---TAATG-C-GCG-ACGACGCCAT---TTTG----T-------TTATA--A-TTA--GA--TCCACGCGCTGTa
gi|12 : ata-TGCTT-A----AAAAA-CAAC-TCAAAAA---CGA----ACAG---GTCGATTCGATAA----C-GTAACCAA---ACTTGAAC-AAGA-AATCAAG----A-GT-ATCTG--GA---GCAAGAAACCC--A-TC-TACT-GCA---TTCAAAAC--C--T-ATACAA-CTCCC-TACTAC--GACAAa
gi|13 : ttgtcGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-ACG--AA-TTCACTGTTTT-TTAAAC-CGAGTCCGTATG-TTT--CTAATGAT-GTG-ACGCCGCCAT---TTTG----T-------TTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|14 : AAAAA--T-C----ACTAGATATTGAAT-GAT--------GTTATCGA---CCTCAAAC-AATA-AGTTCGC----T-GA-ATATG--GA-CTGCCAT---CCTAGA-TT-C-CT-ATG---CACTAAA------T-ATTCAA-ATGAC-TTCTTac
gi|2 : TGGATCATAATTTT-ATAAACAAAATGGC-GTCCGT-GT-GTC--GGCTCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATGTGGACAAATGACACCAC-GTATTATAATT-AGATGTGACGTAATTTT---CCTTATG--ACGT-ATTGAA-ATACGTCAGCTTGTATGTA---A-ACAGAGGATGGG-G-AAGTCAAAA-GAT-TTATCACCGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTTAAAGTGGAATTAAGCAGTCC-GATA-TCACCAGGAGTTTG--GGACTGAATAGG--TGTACAGTTGTGT-G---CTGTAATAAAGCGATATATGGAGAGAGGTTC-CGTGGAGAACAA-GCCTCGAACGGGAAGGA--AGAAAAAAATTAG-CATACGAGACGAGCGAT-CAGATTAAATTT-GAGGTTA-GTAAA-ATC-CCAC--CGT----GTAGAGCCTTTGAAAGATATTACTCAAAG-A-TTCAATCCGTTCG--G-AGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGTCTGTTCC-GTAATAAATACATGTATCACAAACGTGTTGT-TAGAAAAAAAC-------CATCCG-AATT-CGAG--AGAG-AAACATGAAAAAGCGT---GT-GACATGGGCTAG--A-GG-GA----AAAGACATTGGAAAGTTGATAATG-AA-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TAGA-GAAA-ATAGCCGCGTATAT---GT-ATGGCGGAG-GCCAGG----A-GAAG---AGT-----G----GTTGCCCCAT-TGCATTAGTCCCAGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGGGGTG-------TATCTGC-TGGAATGGACCAGGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGCCAA--G---AGATA---CATAG---AAAT---CA--TAG---GCAATGAATTATGGCCAGTTGTTGCCAGGCATTTTCC------------------T----CAGAATAACTTTAT----TTTTCAAGATGATAA--TGCGC-CGG-TGCATCGCTCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGAAATGCTGTGGCCAGCA--CAA--TCACCA-GAT-------A-CTAA-TAT-TATTG---AAAAC--TGT-TG-GTTAT-TGTTG-A----AAACT-CAGC-GGAAAAAA--TGC----GCTA---ATCGAATAGATAA----C-GCGGCCGA---CCTCGAAC-GAGA-AATTAGA----A-GA-ATATG--GA-CTGTCAT---CCCA-A-TC-CACT-ACA---TACATAA---T--T-AAACAA-GTCAC-TTCCTC--GACAAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTAAGT-TTCA-ATTAT-TT-C-A-ATC----CAT-ACA----AAATC-GCG--AA-TTCGCTG-GTTTTTAAAC-AGGGTCCGAATG-TTT--CTAATGAC-GCG-ACGACGCCAT---TTTG----T-------TTATAGTA-TTA-TGA--TCCAC-CGCTGT
gi|3 : TGGATCATAATA------------ATGGC-GTCCGTTGT-GTC--GGCTCGT-GAA-T--TTCAACTTTTTTTA-TTTAC-CTTT---ATTCCTTCTTTAAATGC-CAGTG---ATAA-A-AGATCATAACTATGGACAAATGACACCACTGTATTATAATTTAGATGTGACGTAATATT---CTTCGTGGGACGC-ACTGAACATACGTCAG--TGTATGTA---A-ACAGAGGATGGG-G-AAGTCGAAAAGAT-TTATCACCAAGCTC-ATAAAAACAAAGGGTTGTA-AAT--AG--CTT-CAAAGTGGAAT-AAGCAGTC--GATA-TCGCAGAGAGTTTA--G-ACTAAATTGG--TGTACAGT-GTGTTG---CTGTAATAAAGCGTTATGTGGAGAG-GGTTC-C-TGGAGA-CAA-GCCTC-AACGGGAAGGA--G--AAAAAATTAG-CATGCAA--CGAGCGAT-CAG-TT---TTT-GAGGTTA-GTAAA-AAC-CCAT--CGTC---GTAGAGCCTTTGAAAG-TATTACCCAAAGCA-TTCAATCAGTTCA--A-AAATTACA-----TGCTTTTCCA-G-AGTTACAGTTAAAAG----TGTTTGTTCC-GTAATAAATA------T-ACCGACGTGTTGT-TAGAAAA-----------CAT-CG-AATT-CGAG--AGAC-GAACATGAAAAAGCGT---GT-GGCATGGGCTAGGTA-GGAAA----AAAGACATTGGAAAGTTGATAATG-ACTTGAAACCGTGTCGATATTTTTCTG------ATGAAATGTAAAA-GTGGTAAT-TGGA-GAAA-ATAACCGCGTATAT---GTGATGGCGGAGAGCCTGG----A-GAAG---AGT-----G----GTTGCCCAGT-GGCATT-GTCCCGGTC-GC-GCGC-TA-AAGTCAGTATGA--TGATTT-GGGTTG-------TATCTGC-T-GAATGGACCAGGTAC--TTTGA-CAGCT-TGTTGA-AT-GTAAT-TAA-GCCC-----AGT-AGATA---CATAG---AAAT---CA--TAG---ACAATGAA-TGTGGCCAGTTGTTGCCAGGCATTTCCC------------------T----CAGAATGACTT-A-----TTTTCAAGA-GATAA--TGCGC-CGGATG-ATCGCGCA-AGAAGTGTTCG--TA--A---ATTT--C-AAAAT------A-C-ATAATATTCGTGGAATGCTGTGGCCAG----CAA--TCACCA-GAT-------GTCTAA-TAT-TATTG---AAAAC--TTA-TGTGTTAT-TGTTG-A----AAAAA-TAGCTTGAAAAAA--TGC----GCTA---ATCGAATAGATAA----TGGCAGCCGA---CCTCGAAC-GAGACAATTAGG----A-G--ATATG--GACCTG-CAT---CCCA-A--C-CACTAACA---TACAGAA---C--T-ATACAA-ATCACTTTCCTC--GACGAA-T-GTCAAGAT-CA---TACGATC-GGAAGAGATA-TGCC--C--A-----AATATTAGGATAG--TTCA-ATTAT-TT-C-A-ATC----CATAAAA----AAATCAACG--AA-TTCGCTGTCTTTTTAAA--CGGG-CCGTATG-TTTGGCTAATGACGGCG-ACGACGCCATTTGTTTA----TCATATTCTTATAATA-TTA-TGA--TCCAC-CGCTGT
gi|4 : cggCATAATATT-ATAAACAAAATGGC-GTC---------------TCGT-GAAAT--TTCAACTTTTTT-A-TTTAC-CTTT--TAATCCT-CTTTAAATGC-ATGTGTCCATAA-ATAGATCATACATATGGACAAACGACACCAC-GTATTATAATT-AGATGTGATGTAATATT---CCTTGTG--ACAC-ATTGAA-ATACGTCAGTTTGAATGTATAAA-ACAGAGGATGGGTG-AAGTCGAAA-GAT-TTATCACTGAGCTT-A---AAACAAAGGGTTGTA-AAT--AG--CTTTCAAAGTGGAATTAAGCAGTCG-GATA-TCGCCAGGAGTTTG--GGACTGAAT-------------------------------AAGCGGTATGTGGAGAGAGGTTC-CGTGGAGAACAA-GCCCCGAACTGGAAGGA--AGAAAAAACTTAG-CATACAAGACGAGCGAT-CAG-TT---TT--GAGGTTA-GTAAA-AAC-CCAC--TGT----GTAGAGCCTTTGAAAGATGTTACCCAAAG-A-TTCAATCAGTTCA--G-TGA--AAA-----TACTGTTTCA-GAAGTTACAGTTAAAAGA---TGCTTGTTCT-GTAATAAATA------TCACAGACGTGTTGT-TAGAAAAAG---------CATCCG-AATT-CGAG--AGAC-AAACATGAAAAAGCGT---GT-GGCATGGGCTAG--A-GG-AA----AAAGACATTGGAAAAATGATAATG-AC-TGGAACCGTGT-GATA-TTTTCTG------ATG-AATGT-AAA-GTGGTAAT-TGGA-GAAA-ATAACAGCGTATAT---GT-ATGGCGGAG-GTCTGG----A-GAAG---AGT-----G----GTTGCCCCAA-TGCATTAGTCCCGGTC-GCGGCGC-TA-AAGTCAGCATGA--TGATTTGGAGGTT-------TATCTGC-TGGAAAGGACCAAGTAC--TTTGA-CAG-T-TG-TAA-ATGGTAATATAA-ACGC-----GCAGAGATA---CATAG---AAAT---CA--TAG---ACAATGAATTATAGCCAGTTGTTGCCAGGCATTTTCC------------------T----AAGAATGACTTTAT----TTTTCAAGATGATAA--TGCGC-CGG-TGCATCGCGCA-AGAAGTG-TCG--TA--A---ATTT--CAAAAATG-----A-CAATAATATTCGTGGAATGCTGTGGAAAGCA--CAA--TCACCA-GAT-------G-CTAA-TAT-TATTG---AAAGC--TGT-TG-GTTGT-TGTTG-A----AAAAT-CAGC-TGAAAAAA--TGC----GCTA---ATCGAATAGATAA----C-GCAGCCGA---CCTCGAAG-GAGA-AATTAAA----A-GA-ATATG--GA-CTGCCAT---CCCA-A-TC-CACT-ACA---TACAGAA---C--TAATACAA-GTCAC-TTCCTC--GACGAA-TGGTCAAGAT-TA---TACGATC-GAAAG-GATA-TGCC-ACG-A-----AATATTAGGTa
gi|5 : A--TGATTTGGGGTTG-------CAT-TACATGGCACGGAATCGGCACGATTTCAGCAG-T-TG---A-A-GGCAATATTA-AAG------A---AAACAAACCCCAGC--AAAT---TC--TAGTTGACAAT---TTGTAGTCTGTGATAGCTCAACATTTTCCAAACGACCAGTACATATTT----CAGGATGACC--AT----ATTTCAAGATAACAA--TGCGC-CTG-TTGACCGTGTA-CGA--TG-C------------ATTCA-CAGAAATGCCATAA-CAACAAT-------GA--GC--TGACCAGCA--GAAAGTCA--A-GAC-------A-TTAA-CAT-AATTG----AAAC--TAT-TG-G------GCTGCACATCAAAATAAAGC-TTCAGGGA--CGC----ATTG---GTAGAATGGAGAA----C-AAGGACGATATCTTC---C-GTGA-AATTCAT----A-CA-ATTTG--GA-CGGCCA----CGCA-C-TT-CAGT-ATG---TCCAGAGT--C--T-ATATCG-ATCGA-TTCC
gi|6 : ACAATTTTCATGGAATGTTCATGCCAGCA--CAA--TCACCA-GATCCTCTATG-CTAA-TCT-TATTG---AAAAC--TGT-T-----AT-TGTTG-A----AAAAT-CAGC-TGAAAACA--TGCACTAGCTA---ATCAAATAAATGA----T-GCAGTCGA---TCTCGAAT-GAGA-AATTAGATTGAA-GA-ATATG--GA-C----------CCA-A-TT-CACT-ACA---TACAGAA---C--TTATACAA-GTCTC-CTCCTT--GATGAA-TGGTCAAGAT-TAATTTATGATC-GAAAA-GATA-TGCT-ACA-A-----AATATTAGGTAAGT-TTCATGTTAT-TT-A-G-ATTCATGCAT-ACA----TAATC-ACG--AA-Tgttcg
gi|7 : GT-CAG-GTGATGGT-TGGA-AACA-ATAATCGGATTTAT---AT-TTGGCGGAA-AT-GGG----ACGAAGTCGAGTCCAGAG----ATTGC---GTATGC-CCA--CCTGCTCAGAGG-----A-AACTTTCCATCA--TGATCTGGGGATGCAATACGTATC-AC-GGCGTAGGAACAATCAC-----GA-CAG-TATA-TGGCACGATAA-ATAG-ACAC-----A---A-ATA---CATTG---AAATACTCG--AGG---ACAAT---TTATGGCCAGTGATCGCACGGCATTTTCCGGA---------------G----CAGGATTGCTT-G------TTTCAAGATGA
gi|8 : aaAGAAAATTGGACATTAAAAACGAGCG-T-CAG-CT---ATT-ATGGCTT-GTAAA-ATC-TTAC--CGTACCTGCGACTCCATTGAAAGACATAAC--AGGACAATTTAATCAA---G--GTAGG--AAAGTTCCT-CTGTCTGA-ACAAT--CAATTCATTGT---TATTTGTCAA-AAAATAAATA------TCATCGACATG-TGTGCAGGAAGAA---------AATTAG-GATT-C-AG--GAACAAAACAGGAAAAATCGT---GT-GGCATGGGGGAGG-A-GG-GA----AATGA
gi|9 : CATGAGTTGATT-----GTG-------TATTTGC-TGGAAAGATCCAAAGAC--ATTAA-TGG-A-TA-TAA-ATGGAATTATAA-ATGC-------------------T-G---AAAT---TG--------ACAATGAGTTATAGCCATTTGTCCCTTAGCATTTCCC-----------------------CAAAATAA--T-CT----TTTTAAGAATGACAA--TGTTT-GTG-TGCATCGAGC----ACGTA-TCGCCCAGCA---GTTTACTAAAAAAA-----ACCCACAACATTT-----ATGCT-----CAGAG--CAG--TTACCA-GAT-------G-tcaacgatggactgttg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGATGACCAGTGTTCCGTGAAATACAATTGGATTCGTATCACACCTGAGTATGTTTTAAAAATGCCTATACCGCTAGATTCCC
Unaligned ( gi|16 ): AGATTGATGTGGTTTGAAAGAAAATCGTATACCATATA