lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 4444444444444444444444 2 1 444444444444 66666666666666 11 1 11 6666666666666 77777777777777 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333333 6666666666 2222 2222222222222 333333333333 11 444 111 1 4444444444444 1111 1 777777777777777777 1 4444444444444444444444 1111 222222 111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11
lowQualScore : 6 2 0 2 99 4444444444444444444444 1 3 555555555555 2 9 55555555555555 2 2 11 6 11 1 0000000000000 6 6 3 8 0 22222222222222 8 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 222222 8 6 99 6 3 1111111111 0000 8888888888888 6 6 2 2 777777777777 1 2 9999 888 22 6 6 99 000 44 111 6 6 3 99 4444444444444 0 1 7777 1 6 1 888888888888888888 9 0 3 4444444444444444444444 1 1 8888 6 777777 8 777 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 8 1 22 6
lowQualScore : . . . . .. ...................... . . ............ . . .............. . . .. . .. . ............. . . . . . .............. . ................................................................................................................................................................................................................................................. . ...... . . .. . . .......... .... ............. . . . . ............ . . .... ... .. . . .. ... .. ... . . . .. ............. . . .... . . . .................. . . . ...................... . . .... . ...... . ... . ............................................................................................................................................................... .. . . .. .
lowQualScore : 7 5 5 5 00 5555555555555555555555 2 2 000000000000 2 8 22222222222222 2 5 00 0 00 0 2222222222222 0 0 2 0 8 66666666666666 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 222222 0 0 22 7 3 0000000000 7777 5555555555555 7 7 5 5 000000000000 7 8 8888 222 00 0 7 22 222 33 777 0 7 3 22 0000000000000 2 4 0000 2 0 2 444444444444444444 6 0 5 5555555555555555555555 0 0 4444 4 222222 0 555 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 2 0 66 0
consensus : GCATGGGTGTGGAATTAGTAT-GCC--------CGACT---------CGTACATTTGTTGAACCGGACGANT---A-ACCTTTTTGGTGCT------ANA-----TTGTCCGTGGACAAGTGAA--AA-AA--TGACCATG-CCCNTATTTTGGGAGTGCGAAAATTCGATGCGA-GGCAATCTAAATTAAAAA---TG-GTCGATAAAAA-GATACCTAAACGG------GTA------AATACN----AC----TTG------CT----ACTCGATAAATTTATTG-ACAG-C---TAACA--CT-ACCG-ATG-TTT--TA-ACAC-----GT----TT---G-A-TTTCCG-------GTA---A----------GTNATAAA-TC-CGAGCCCGAATCTATGA----A----AA-----AAN----GCAA---AAATAGGAGT--CTGA--TTTTTTTTTAATTCGAT-ACGTTATT-NTCGCATATG--A-----TAT-AC-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACTGACAC-G---------GACACCAAA--AGAACTCACGATCAGTCACACC-TCAGCG--CACACAGGTCG---CCAA-G-TTA--GCT-------------GTCGGTCTGAAGCCA----GANATAATTGAGATAAAG-----------GA---TAATATTTCTAATCATTTATAACAGGGTCAAATAAAANCTCAAAGCAATTGAAAA--AC-GGCTATAAAATTGAAAT-AACAAAATTGACATTATCAGG-ACTTT-GGTTACTTATAAN-AAAAAA---GA--------A-AAAGAGACGTNGTCAA-ATTT--TCT-TA-----AAAGTCTGGA----C-A----AG------TTATTTTTNTTTC-GGACA-AGTGAA-A--TTTCC---A-------TT-------GCC----TGGGG-ACAAGTGCT--CTCACTAGATATTTCCACACCCCTG
Reference ( gi|3 ) : GCAGGGGTGTGGAAATAGTAT-TCC--------TGACT---------TGTACAGTTGTTGAACAGGAGAATT---A-ATTTTTTTAGTGTT------AT------TTGTCTGTGGACAAGTGAA--AA-AA--TGACCATG-CCAGTATCTTTAGAATACGAAAATTTGATGTGA-GGCAATCTAAATTCAAAA---TGCATCAATAAAAA-GATATTTAAAAGG------GTA------AATACA----AC----TTG------CT----ACTTGGTAA---------GCAG-C---TAACA--CT-ACCA-ATG-ATT--T----AC-----GT----TT---A-A-TTGCCG-------GTA---A----------ATGATAAA-TCACGAGCTCGAATGTATGA----A----AA-----AAG----GC-A---AAATTGGAGTACCTGATTTTTTTTTTTTTTTTTAT-ATGTTATT-GTTGCACA----A-----TAT-GC-AAATTATTATACACACATAGCCCCCAAAATATTTGTGCACATGG-ACTGACAT-G---------GACACCAGA--AAAACTCGCAATTGGTCACATC-TCAGTG--CACAT--GCCG---CCGA-G-TTA--GCT-------------GTCGGTCTGAAGCCA----GATATAATTGAGATAAAG-----------GG---TTATATTTCTAATCATTTATAACGGGGTCAAAGAAAAACTCAAAGCATTTAAAAA--A--GGCTCTAAAATTGAAAT-AACAAAATTGACATTTTTAGG-ACTTT-GATTACTTATAAAAAAAAAA---GAGAGAG-AGAGAGAGAGACAAGGTCAA-ATTT--TCT-TA-----AAAGTCTGGA----C-A----AG------TTACTTTTCTTTC-GGACA-AGTGAA-A--TTTTC---A-------CT-------GCA----AGAAGTGCAAGTGCT--CTCCCTAGAAATTTCCACACCCCTG
gi|2 : GCATGGGTGTGGAATTAGTATGTCCGACTCGCTCAACT---------TGTACATTTGTTGAACCGGACAAGT---G--CCTTTTTGGTGCT------AG------TTGTCCGTTGACAAGTGAA--AAGAA--TGACCATATCCAA-ATTTTGGGAGTGCGAAAATTTGATACGA-GGCAATCTAAATT-AAA----------GATAAAAA-GATA-CTAAAAAG------GTA------AATACT----ACTTAATTG------TT----ACTTGATAAATTTATTG-ACAG-C---CAAGA--CT-ACAT-ATG-TTT--TATACAC-----G----------A-A-CT-CCGATATTGAGTA---A----------GTTATAAATTCA-GAGCCTGAAT-TATGAGGATA----AAC----AAT----GTAA---AAATAGGAGT-----ATTTTTTTTTTTAATTCGAT-ACGTTATT-TTCACATATG--A-----TAT-AG-AAATTATTTTATGCATATAA-CCCGAAAATAGTTGTGCACACGG-ACTGACAG-A---------GAAATCA
gi|1 : caatgctatttactcagtttcaaatattcagttcgcataggttcccagatgggtatcatcggtgttacgaggcatcgcactcaattatttcaaagtatttttccccacgatttgacgttcaattacatcacaatacaagtacatggttttcaagctgtgatataaatccaccgtgtttttgctatttaatctatgtagaactgtcccttcaccttttctttttcattcatgattgccgatttaaatcttaatttgtcatgcaagggttcagacaaccggactcagaagaggaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgttatgcaagaaatactggcctacatcagtaGCATGGATGTGGAATTAGTAT-GCC--------CGACTCGCTCGATTTGTACATTTGTTGAACGGGACAAGT---A--CCTTTTTGGTGCT------ACATGTAGTTGTCCGTGGACAAGTGAA--AAAAA--TGACCATG-TCCACATTTTGGGAGTGCGAAAATTTGATGTGA-GGCAATCTAAATT-AAA----------GATAAATA-GATACTAAAATGG------GTA------AATATATACTAC----TTG------CT----ACTTGATAAATTTATTG-ACAGCC---TAA-A--AT-AGCG-ATG-TTT--TACACAC-----GTA---TTCCGATA-TTG--A-------GTA---A----------GTTACAAATTCA-GAGCCTTAATCTATGA----A----GATAAACAAT----GCAA---AAATAGGAG-----G----TTTTTTTTTATTCGAT-ACGTTATT-TTCACATATG--A-----TAT-AG-AAATTATTTTATGCATATAA-CCCGAAAATATGTGTGCACACGG-ACTGACAA-A---------GAAATCActtctgcacacacaggtctgaagccaaatata
gi|4 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaataAGGGGTGT--AAATA-TAT-GCC--------CGACT---------TGTATA-TTGATAAACCGGCACATA---ACATTTGTTTGG-GTTTAGTTAATA-----TTGTCTGTG--CAAGTGAA--AA-AAAATTACCAAG-CCCCTAT-TTTGGAGTGCGAAATTCCGTTGTGA-AGCAATCTAAGTTTAAAAAATTG----AATGAAAA-GATAC-------------------------CGCC----AC----TTG------CT----ACT--GTCAT--------ACAA-CTTATGACAAGCTAACTA-ATT-TTT--T----ACATAGTAT----TT---G-ATTTCCCG-------GTACTTAATACTTGATTATAATAAA-TC-C-AGATCCGATCTTTGA----G----AAT----AAACGATGC-AATCAAAT--AAATA-CTGAAGTTTTCTTTTTTAATCATAACGTTATTGGTCGCATA----ACAAT-TAT-ACAAAATTATTTTAGCTAAAT----CCCAAAATATTAGCACAAA-AG-ACT-AGATGG---------GACACC-GATCAGAACTCACGATCATCCACACCTTCAGCG--CGCAC--ACAGGTTCCAA-GATTATGGCT-------------GTTGATCTGAAGCCA----AAATTATTTGAGAGAAAGAATCATACCCAGGATATAATATGTCTAATCATTTACAAC-AGGTCAAATAAAAATTTAAAACA---AGAGA--C--GGCTAGATAAATGAAATAAACAAAATTGACA--CTAAGG-ACTTT---TTACTT-T----------------------GATAAAGAGACCTGGT--A-ATTT--TTT-TGT----AAATTCTGGAAG--C-A----A--------TATTTTTcttcggcacacacaggtctgaagccagatataaa
gi|9 : GGGTGTGGAATTAGTAT-GCC--------TGACT---------CATGCACTTGTGGAACTGGACGATTCTAA-ACTATTTTAGATTT------AG------TTGTCCGTGGACAAGTGGA--AA-AA--AAA--AGG-C-----------GAGTGCAAAAATTCAATGCGA-AGCAATCTAAATTAAAGT---TGAGTCAATAAAAAGGATAGCTAA
gi|8 : tggaaaattaatacagaaccaatgacAGTGAAAAAA-AA--TGACCATG-TTCTT-CCTTGAGAGTGC-AAAATTCTATGTGAGGGCAATTT-AATTAAAGA---TGTGTCAAATAAAA-GATACCTAAACTGTTACATGTAAAGAATAATACA----AC----TTGATGATACTGAGCACTCAATAAATTTATGCGACAG-C---TAACA--TT-ACCAGATG-TTTTAT----AC-----ATGTACTT---G-A-TTTCCT-------GTA---A----------ATAATAAA-TTCCAAGCCCGAATCTATGA----AGGATAAAC---AAT----GCAA---AAATTGGAcattactgatgttttatacatgtacttgatttgcagtaaataattaat
gi|10 : -ATGTACT--T----AT-----AC----TT---G-A-TTTCTG-------ACA---T----------ATCATAAA-TCCCGAGCTCGAATCTATGA----A----GA-----TAA----AC-A---G--------------------TTCTTTAATTCGAT-ACACTATT-GTTGTATATGATA-----TAT-AC-AAATTATTTTTCACATATAACCCCCAAAACATTTGTGCACATGG-AC--A----G---------GTCA-TAAA--ATAACT----ATCAGTAACACC-TTAGTGCACACAT--GTAG---CCAA-G-TTA--GCT-------------a
gi|16 : cgatgttttatacT----TT---C-A-TTTCCG-------TTA---A----------GTAATAAA-TC-C-AGCCCAAATCTATGA----A----AA-----TAA----AC-A---CAAT
gi|5 : accgatcttttatacattgaG----GA-A---AAAAAGGAGTGCCTA---TTATTTTTTAATCAGAT-ACGCTATT-TTTGCATAT---A-----TAT-G------------------ATA-CTCCCAAAATATTTGTGCACATGA-ACTGACAC-G---------GACGCTAAA--TGAACTCGCAACCAGTCACACT-TCAACG--CACACAGGTCG---CCAATGTTTA--GTTGACAGTCAGATGAGTCTGTCAGAAGCCA----GA-ATTATTGAGGTGAAG-----------G------ATATTTCTAATCATataa
gi|11 : gTATT-GT--CACA----AGTGATTATAGC-AAATTATT-TACACATATAACCTCCAAAATATTTGTACATACGGGACTGACAC-GACTAACATTGGCACTAAA--AGAACTCAAGATCAGTCACACC-TCAGTG--CACACAGGTCG---CCAA-G-TTA--GCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattatcaatactttgtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|6 : tttctaatccgagtacacACCAAC--AGAACTCACGATCAATCACACC-TCAGTG--CACACAGGTCG---CCAA-G-TTA--GCC-------------ATCGGTCAGAAGCCA----GAAATAATTGACATTAA--------------------CATTTCTAATCATTTATAACAGGGTCAAATAAAATCTTAAAGCAATTGAAAA--ACAGGCTGTAAAATTGAAGT-AACAAAATTGACAATATCATG-ACGTT-CATTACTTATAAA------------------------AGAGACATAATAAA-ATTT--TCTGTA-----AAA-TCTAAA----C-A----AG------TAAATTTT-TCCC-GGACT-AGTGAA-A--TTTTCATTA-------TT-------GTT----TGGAG-ACAAGTGCT--TTCACTAGATATTTCCACACCCaattggaaaaacaggatgttaatttgacatta
gi|7 : --AAAACTCACGATCAGTCACACC-TAAGTG--CACACAAGTTG---C-AA-A-TTA--GCT-------------GGGAGTCTGAAGTCATGCAGATATA---GAGATAAAG-----------AA---TAATATTTCTAATCATTTATAAAAGGGTCAAACAAATACTCAAAGCAATTGAAAA--AC-AGATATAAAATTGAAA--------ATT-AC-----TAGG-ACTTT-GGTTACTTATGTGTAATGAA---GA--------------AGACATGGCAAA-ATTT--TCT-TC-----AAA--TTGAAT---T-A----AA------TTA-TTTTC---C-GGACA-AGT-AA-A--TTTCC---ATTAGTACTT-------GCC----TGGGG-ACAAGTGAT--CTCACTCGATATTTCCTCACCCC
gi|1 : GGTCTGAAGCCA----GATATAA
gi|17 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaatagcatggatgtggaattagtatgcccgactcgctcgatttgtacatttgttgaacgggacaagtacctttttggtgctacatgtagttgtccgtggacaagtgaaaaaaatgaccatgtccacattttgggagtgcgaaaatttgatgtgaggcaatctaaattaaagataaatagatactaaaatgggtaaatatatactacttgctacttgataaatttattgacagcctaaaatagcgatgttttacacacgtattccgatattgagtaagttacaaattcagagccttaatctatgaagataaacaatgcaaaaataggaggtttttttttattcgatacgttattttcacatatgatatagaaattattttatgcatataacccgaaaatatgtgtgcacacggactgacaaagaaatcacttcggcacacacaG-----------GA---TAATATTTCTAATCATTTATAAAAGGGTCAAAGCAAa
gi|5 : CGGGGTCAAATAAAACCTCAAAGC----AAATATCA--GGC-----------AGT-A--AAAATTAACATTATCAAT-ACTTT-Gttgaaaaaaaca
gi|12 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTAAT-TGCAAAACTATCATTGCTAGATACTTTTGGTT-CTTTTAATAAAAAAA---AA----------------AC-----C----TTT--TTC-TACTCGTAAGGTCTGGATCGAC-A----AG------TTATTTTTA-TTC-GGACAGGGTGAA-A--TTCCC---AATTAC--CT-------------------TGTAAGTGCC--CTCACTTG-AATTTCCACAtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|14 : AAAAATTTGCGAGAGCATAAAAAGAAATCATG-CGA-ATTTC-TGT-TA-----AAAGTCTGGC----G-A----A------------TTTTTTTT-GGACA-AGTTAAGA--TTTCC---A-------TT-------ACATCCTGGGA---CAAGTGCT--CTC
gi|15 : AA---GAGAGAG-AGAGAGAGAGAGGACGTT-G-ATGTGATCC-TA-----AAA---TGGA----CTA----A---------ATTTTTATTTCAGGAAA-AGTGAACG--TTTTT---C-------CT-------GCA----ac
gi|5 : TCAATACTT--TGT--------AAAGTCTGGA----C-ATTTTAGCCAAATTTTTTTTTTTTTT-GGACA-AGTGAA-AATTTTCC---A-------TTATTT---GCC----TGGGG-ACAAGTGCT--CTCCCTAGATATTTCCACACCC
gi|13 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattaTTT--TCTGCA-----AAAGT-TGG-----C-A----AG------TTACTTTTTCT---GGACA-AGTGAA-A--TTTCC---A-------TTATTACTTGCC----GGGGG-ACAAGTGCTGTTTCTCTAGATATTTCC-CACCCCTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ATAAAAGGGTCAAAACAATTGAAAAAACATATG
Alignments
lowQualScore : 666666666 11111 11 444444444444444 1 11 444444444 444444444444444444444444 33333333333333333 1111 11 666666666666666666666 22222222222222 11 66666666666666666666666666666666666666666666666 11111 444444444444444444 3333333333333 1111 444444444444444 11 1111111111111 77777777777777777777777777777777777777777 11 22222222 33333333333333333333 111 44444444444 1111 111
lowQualScore : 0 1 444444444 0 3 8 9 1 88888 1 11 6 666666666666666 3 88 1 888 1 0 6 1 99 888888888 6 77 777777777777777777777777 1 11111111111111111 3333 8 3 66 6 6 555 0 5 333333333333333333333 66 5 44444444444444 1 5 5 88 0 22222222222222222222222222222222222222222222222 1 1 8888 5 5 66 66 77 5 33333 5 1 55 1 88 4 5 5 222222222222222222 5 1 6666 2 0 4 66 2 9999 999 66 1111111111111 1 4444 7 3 3 444444444444444 1 3 66 1 1 33 0 9999999999999 888 5 66 0 6 00000000000000000000000000000000000000000 00 00000000 9 0 22222222222222222222 7 000 5 5 77 33333333333 2222 000 888 77 1 3 3
lowQualScore : . . ......... . . . . . ..... . .. . ............... . .. . ... . . . . .. ......... . .. ........................ . ................. .... . . .. . . ... . . ..................... .. . .............. . . . .. . ............................................... . . .... . . .. .. .. . ..... . . .. . .. . . . .................. . . .... . . . .. . .... ... .. ............. . .... . . . ............... . . .. . . .. . ............. ... . .. . . ......................................... .. ........ . . .................... . ... . . .. ........... .... ... ... .. . . .
lowQualScore : 8 4 000000000 8 2 0 6 0 66666 4 00 0 444444444444444 3 33 0 333 0 7 7 7 22 555555555 7 22 666666666666666666666666 0 22222222222222222 8888 0 8 66 7 7 333 7 0 888888888888888888888 99 0 99999999999999 0 0 7 99 7 99999999999999999999999999999999999999999999999 8 7 0000 7 7 77 00 99 7 11111 7 4 77 4 00 0 7 7 333333333333333333 0 1 4444 9 1 4 11 9 4444 777 99 4444444444444 0 2222 5 5 8 888888888888888 5 3 77 0 7 00 3 3333333333333 444 7 44 8 0 99999999999999999999999999999999999999999 66 66666666 4 1 44444444444444444444 6 222 0 0 99 99999999999 1111 000 111 99 6 5 5
consensus : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTC-A-TTGTACATTTGTTGAACCGG-ACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCGATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACA-C--G---TAC------TT--GATTTCC-GGTA-----------A--ATNATAAAT-C-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTA-CTGA----TTTTTTTTTAATCCG--A-TA-CGCTATTG-TCGCATATGA--T-AT--A-CAAA-TTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACG-G---------GACACCAA-AAGAACTCGCGATCAGTCACACCT-CAGCGC--ACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGCCA----GATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATA-ATAA-AA---------AGAAAAAGAG-A-CATGGTCAA-ATTT--TCT-----TA-AAAGTCTGGA----C-A----AG------TTATTTTTNTTTC-GGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
Reference ( family-8876 ) : GCATGGGTGTGGAATTAGTATGCCCGACTCG---------TACATTTGTTGAACCGG-ACGANT---AACCTTT--TTGGTGCT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAAATG-GTCGATAAAAA-GATACCTAAACGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-TGACA-G-CTAACACTACC-GATGTTTTA-ACA-C--G---T--------TT--GATTTCC-GGTA-----------A--GTNATAAAT-C-C-GAGCCCGAATCTATGA----A----A--A-----AANGCAA--AAATAGGAGT--CTGA----TTTTTTTTTAATTCG--A-TA-CGTTATTN-TCGCATATGA--T-AT--A-CAAA-TTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACACG---------GACACCAA-AAGAACTCACGATCAGTCACACCT-CAGCGC--ACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGCCA----GANATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACAGGGTCAAATAAAANCTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATA-ANAAAAA---------AGAAAAAGAG-A-CGTNGTCAA-ATTT--TCT-----TA-AAAGTCTGGA----C-A----AG------TTATTTTTNTTTC-GGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
gi|1 : GCATGGATGTGGAATTAGTATGCCCGACTCGCTCGATTTGTACATTTGTTGAACGGG-ACAAGT---A-CCTTT--TTGGTGCT------ACATGTAGTTGTCCGTGGACAAGTGAAAAAAA--TGACCATGTCCACATTTTGGGAGTGCGAAAATTTGATGTGAGG-CAATCTAAATT--AAA--------GATAAATA-GATACTAAAATGG------GTAAATATA------TACTACTT----G------CT----ACT--TGATA-AATTTAT-TGACA-GCCTAA-AATAGC-GATGTTTTACACA-C--G---TA-------TTCCGATATTG-AGTA-----------A--GTTACAAAT-T-CAGAGCCTTAATCTATGA----A----G--ATAAACAATGCAA--AAATAGGA------GG----TTTTTTTTT-ATTCG--A-TA-CGTTATTT-TCACATATGA--T-AT--A-GAAA-TTATTTTATGCATATAA-CCCGAAAATATGTGTGCACACGG-ACT-GAC-------------------A-AAGAA------AT------CACTT-CGGCAC--ACACA----------------------------------------GGTCTGAAGCCA----GATATAA
gi|10 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaataC-GATGTTTTATACA-T--G---TACTTATACTT--GATTTCT-GACA-----------T--ATCATAAAT-C-CCGAGCTCGAATCTATGA----A----G--A-----TA--------AACAG-----------------TTCTTTAATTCG--A-TA-CACTATTG-TTGTATATGA--T-ATATA-CAAA-TTATTTTTCACATATAACCCCCAAAACATTTGTGCACATGG-AC---A---G---------GTCA-TAA-AATAACT----ATCAGTAACACCT-TAGTGC--ACACATGTA----GCCAA-G-TTA--GCT-------------a
gi|11 : TTTCTAATCCG--AGTA-CACTATTG-TCACAAGTGA--TTAT--AGCAAA-TTATTT-ACACATATAACCTCCAAAATATTTGTACATACGGGACT-GACACGACTAACATTGGCACTAA-AAGAACTCAAGATCAGTCACACCT-CAGTGC--ACACAGGTC----GCCAA-G-TTA--GC
gi|12 : TTGTAAT-TGCA-------AAACTATCATTGC-TAGATACTTTTGGTT-CTTTTA-ATAAAAA---------AAAAA--------CCT--------TTT--TCTACTCGTA-AG-GTCTGGATCGAC-A----AG------TTATTTTTA-TTC-GGACAGGGTGAA-A--TTCCCA--A-------TT----AC---CTTG----TAAGTGC--CCTCACTTGA-ATTTCCACAaattggaaaaacaggatgttaatttgacatta
gi|13 : AATTGGAAA-AACAGGATGTTAATTTGACATTATTCAGG-ACTTT-GGTT
gi|13 : gcTTT--TCTG----CA-AAAGT-TGG-----C-A----AG------TTACTTTTTCT---GGACA-AGTGAA-A--TTTCC---ATTATTACTT----GC---CGGGGG-ACAAGTGCTGTTTCTCTAGATATTTCC-CACCCCTGttttctgcaaaagttggcaagttactttttctggacaagtgaaatttccattattacttgccgggggacaagtgctgtttctctagatatttcccacccctg
gi|14 : gcaattggaaaaacaggatgttaatttgacattattcaggactttggttAAAAAGAA-ATCATG--CGA-ATTTC-TGT-----TA-AAAGTCTGG-----C-G----A---------ATTTTTTTT---GGACA-AGTTAAGA--TTTCC---A-------TT----ACATCCTGGG--ACAAGTGC--TCTCAC
gi|15 : aaaaatttgcgagagcatAGAG---------AGAGAGAGAGGA-CGTTG-----ATGTGATCC-----TA-AAA---TGGA----CTA----A---------ATTTTTATTTCAGGAAA-AGTGAA-
gi|16 : aagagagACC-GATCTTTTATACA-TTGA---T--------TT--CATTTCC-GTTA-----------A--GTAATAAAT-C-C--AGCCCAAATCTATGA----A----AATA-----AACACAA--cgtttttcctgca
gi|17 : GG--------------ATAATATTTCTAATCATTTATAAAAGGG------------TCAAAGCAATTGAAAAAtataa
gi|2 : GCATGGGTGTGGAATTAGTATGTCCGACTCGCTCAACTTGTACATTTGTTGAACCGG-ACAAGT---G-CCTTT--TTGGTGCT------AG-T-----TGTCCGTTGACAAGTGAAAAGAA--TGACCATATCCAAATTTTGGGAGTGCGAAAATTTGATACGAGG-CAATCTAAATT--AAA--------GATAAAAA-GATAC-TAAAAAG------GTAA----A------TACTACTTAATTG------TT----ACT--TGATA-AATTTAT-TGACA-G-CCAAGACTACA-TATGTTTTATACA-C--GAACT--------CC--GATATTG-AGTA-----------A--GTTATAAAT-T-CAGAGCCTGAAT-TATGAGGATA----A--AC----AATGTAA--AAATAGGAGT--ATT-----TTTTTTTTTAATTCG--A-TA-CGTTATTT-TCACATATGA--T-AT--A-GAAA-TTATTTTATGCATATAA-CCCGAAAATAGTTGTGCACACGG-ACT-GAC-------------------A-GAGAA------AT------CACTT-CTGCAC--ACACAGGTCTGAAGCCAA-A-Taaca
gi|3 : caatgctatttactcagtttcaaatattcagttcgcataggttcccagatgggtatcatcggtgttacgaggcatcgcactcaattatttcaaagtatttttccccacgatttgacgttcaattacatcacaatacaagtacatggttttcaagctgtgatataaatccaccgtgtttttgctatttaatctatgtagaactgtcccttcaccttttctttttcattcatgattgccgatttaaatcttaatttgtcatgcaagggttcagacaaccggactcagaagaggaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgttatgcaagaaatactggcctacatcagtaGCAGGGGTGTGGAAATAGTATTCCTGACTTG---------TACAGTTGTTGAACAGG-AGAATT---AATTTTT--TTAGTGTT------AT-T-----TGTCTGTGGACAAGTGAAAA-AA--TGACCATGCCAGTATCTTTAGAATACGAAAATTTGATGTGAGG-CAATCTAAATT--CAAAATGCATCAATAAAAA-GATATTTAAAAGG------GTAA----A------TACAACTT----G------CT----ACT--TGGTA-AG---------CA-G-CTAACACTACC-AATGATTTA-----C--G---T--------TT--AATTGCC-GGTA-----------A--ATGATAAAT-CAC-GAGCTCGAATGTATGA----A----A--A-----AAGGCAA--AATT-GGAGTACCTGA----TTTTTTTTTTTTTTTTTA-TA-TGTTATTG-TTGCACA--A--T-AT--G-CAAA-TTATTATACACACATAGCCCCCAAAATATTTGTGCACATGG-ACT-GACATG---------GACACCAG-AAAAACTCGCAATTGGTCACATCT-CAGTGC--ACAT--GCC----GCCGA-G-TTA--GCT-------------GTCGGTCTGAAGCCA----GATATAATTGAGATAAAGG--------------GTTATATTTCTAATCATTTATAACGGGGTCAAAGAAAAACTCAAAGCATTTAAAAAA--GGCTCTAAAATTGAAAT-AACA-------AAATTGACATTTT-TAGG-ACTTT-GATTACTTATA-AAAAAAAAAGAGAGAGAGAGAGAGAG-A-CAAGGTCAA-ATTT--TCT-----TA-AAAGTCTGGA----C-A----AG------TTACTTTTCTTTC-GGACA-AGTGAA-A--TTTTC---A-------CT----GC---AAGAAGTGCAAGTGC--TCTCCCTAGAAATTTCCACACCCCTGata
gi|4 : GGGTGT--AAATA-TATGCCCGACTTG---------TATATT-GATAAACCGGCAC--AT---AACATTTGTTTGG-GTTTAGTTAATAT-----TGTCTGTG--CAAGTGAAAA-AAAATTACCAAGCCCCTATTTTGG-AGTGCGAAATTCCGTTGTGAAG-CAATCTAAGTTTAAAAAATT-G--AATGAAAA-GATACC-----------------------------GCCACTT----G------CT----ACTGTC-ATACAACTTAT--GACAAG-CTAAC--TA----ATTTTTTACATAGT--A---T--------TT--GATTTCCCGGTACTTAATACTTGATTATAATAAAT-C-C-AGATCCGA-TCTTTGA----G----A--ATAAACGATGCAATCAAATA--AATA-CTGAAGTTTTCTTTTTTAATC----A-TAACGTTATTGGTCGCATAACAATT-AT--A-CAAAATTATTTTA-GC---TAAATCCCAAAATATTAGCACAAA-AG-ACTAGATG-G---------GACACCGATCAGAACTCACGATCATCCACACCTTCAGCGCGCACACAGGTT-----CCAA-GATTATGGCT-------------GTTGATCTGAAGCCA----AAATTATTTGAGAGAAAGAATCATACCCAGGATATAATATGTCTAATCATTTACAACA-GGTCAAATAAAAATTTAAAACA----AGAGAC-GGCTAGATAAATGAAATAAACA-------AAATTGACACTA---AGG-ACTTT---TTACTT-T-------------------GATAAAGAG-A-CCTGGT--A-ATTT--TTT-----TGTAAATTCTGGAAG--C-A----A--------TATTTTT
gi|5 : agAA--AAAAAGGAGTGCCT-A----TTATTTTTTAATCAG--A-TA-CGCTATTT-TTGCATAT-A--T-AT--G-------------------ATA-CTCCCAAAATATTTGTGCACATGA-ACT-GACACG---------GACGCTAA-ATGAACTCGCAACCAGTCACACTT-CAACGC--ACACAGGTC----GCCAATGTTTA--GTTGACAGTCAGATGAGTCTGTCAGAAGCCA----GA-ATTATTGAGGTGAAGG-----------------ATATTTCTAATCAT
gi|5 : gggCGGGGTCAAATAAAACCTCAAAGCAA---A---------TATCAG---GCAGT-A--A-------AAATTAACATTAT-CAAT-ACTTT-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattatcaatactttgtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|5 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAATTA-A-CATTATCAATACTT--TGT--------AAAGTCTGGA----C-ATTTTAGCCAAATTTTTTTTTTTTTT-GGACA-AGTGAA-AATTTTCC---A-------TTATTTGC---CTGGGG-ACAAGTGC--TCTCCCTAGATATTTCCACACCCtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|6 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtACCAA-CAGAACTCACGATCAATCACACCT-CAGTGC--ACACAGGTC----GCCAA-G-TTA--GCC-------------ATCGGTCAGAAGCCA----GAAATAATTGACAT--------------------TAACATTTCTAATCATTTATAACAGGGTCAAATAAAATCTTAAAGCAATTGAAAAACAGGCTGTAAAATTGAAGT-AACA-------AAATTGACAATAT-CATG-ACGTT-CATTACTTAT---------------------AAAAGAG-A-CATAATAAA-ATTT--TCTG----TA-AAA-TCTAAA----C-A----AG------TAAATTTT-TCCC-GGACT-AGTGAA-A--TTTTCATTA-------TT----GT---TTGGAG-ACAAGTGC--TTTCACTAGATATTTCCACACCC
gi|7 : AAAACTCACGATCAGTCACACCT-AAGTGC--ACACAAGTT----GC-AA-A-TTA--GCT-------------GGGAGTCTGAAGTCATGCAGATATA---GAGATAAAGA--------------ATAATATTTCTAATCATTTATAAAAGGGTCAAACAAATACTCAAAGCAATTGAAAAAC-AGATATAAAATTGAAA---------------------ATTAC-TAGG-ACTTT-GGTTACTTATGTGTAATGA---------AGA-----AG-A-CATGGCAAA-ATTT--TCT-----TC-AAA--TTGAAT---T-A----AA------TTATT----TTCC-GGACA-AGT-AA-A--TTTCC---ATTAGTACTT----GC---CTGGGG-ACAAGTGA--TCTCACTCGATATTTCCTCACCCC
gi|8 : AGTGAAAA-AAAATGACCATGTTCTT-CCTTGAGAGTGC-AAAATTCTATGTGAGGGCAATTTAA-TT--AAAGATGTGTCAAATAAAA-GATACCTAAACTGTTACATGTAA----AGAATAATACAACTT----GATGATACTGAGCACT--CAATA-AATTTATGCGACA-G-CTAACATTACCAGATGTTTTATACA-T--G---TAC------TT--GATTTCC-TGTA-----------A--ATAATAAATTC-C-AAGCCCGAATCTATGA----AGGATA--AAC---AATGCAA--AAATTGGA
gi|9 : ACGGGTGTGGAATTAGTATGCCTGACTCA---------TGCACTTGTGGAACTGG-ACGATTCTAAACTATT--TTAGATTT------AG-T-----TGTCCGTGGACAAGTGGAAA-AA--AAA--AGGC-----------GAGTGCAAAAATTCAATGCGAAG-CAATCTAAATT--AAAGTTGAGTCAATAAAAAGGATAGCTAAa
gi|9 : tggaaaattaatacagaaccaatgGATA-G-CTAACATTACT-GATGTTTTATACA-T--G---TAC------TT--GATTTGC-AGTA-----------A--ATAATTAAT-cattactgatgttttatacatgtacttgatttgcagtaaataattaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATAAAAGGGTCAAAACAATTGAAAAAACATATG
Alignments
lowQualScore : 777777777 11111 11 444444444444444 1 11 444444 444444444444444444444444 33333333333333333 1111 11 111111 22222222222222 11 5555555555555555555 333333333333 111111 4444444444444444444 3333333333333 1111 444444444444444 11 1111111111111 7777777777777777777 1111111 22222222 3333333333333333333 1111 44444444444 1111 111
lowQualScore : 4 1 111111111 0 3 0 1 88888 1 11 6 666666666666666 3 88 1 888 1 0 6 1 99 3 222222 6 77 333333333333333333333333 1 11111111111111111 3333 8 3 99 6 6 555 0 5 0 4 5 999999 5 44444444444444 1 5 5 88 0 3333333333333333333 66 1 0 777777777777 1 1 8888 5 5 66 66 77 5 888888 1 55 1 88 0 5 5 2222222222222222222 5 1 9999 2 0 4 66 2 9999 999 66 1111111111111 1 4444 7 3 3 444444444444444 6 1 3 66 1 1 33 0 9999999999999 888 5 66 0 6 3333333333333333333 55 5 6666666 5 55555555 5 1111111111111111111 1111 5 0 5 77 33333333333 2222 000 888 77 1 3 3
lowQualScore : . . ......... . . . . ..... . .. . ............... . .. . ... . . . . .. . ...... . .. ........................ . ................. .... . . .. . . ... . . . . . ...... . .............. . . . .. . ................... .. . . ............ . . .... . . .. .. .. . ...... . .. . .. . . . ................... . . .... . . . .. . .... ... .. ............. . .... . . . ............... . . . .. . . .. . ............. ... . .. . . ................... .. . ....... . ........ . ................... .... . . . .. ........... .... ... ... .. . . .
lowQualScore : 2 4 222222222 8 2 8 0 66666 4 00 0 444444444444444 3 33 0 333 0 7 7 7 22 7 222222 7 22 222222222222222222222222 0 22222222222222222 8888 0 8 44 7 7 333 7 0 9 2 0 444444 0 99999999999999 0 0 7 99 7 9999999999999999999 99 7 7 222222222222 8 7 0000 7 7 44 00 99 7 999999 4 77 4 00 4 7 7 1111111111111111111 0 1 6666 9 1 4 11 9 4444 777 99 4444444444444 0 2222 8 5 8 888888888888888 3 5 3 77 0 7 00 3 3333333333333 444 7 44 8 0 0000000000000000000 77 7 3333333 0 44444444 6 1111111111111111111 1111 7 7 7 99 99999999999 1111 000 111 99 6 5 5
consensus : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTC-A-TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTAC-TGA----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-AT--A-C-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACA-GGAC----------ACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATAATAAAA----------AGAAAAAGAGA-CATGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
Reference ( family-8876 ) : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTCA--TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCGATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTAC-TGA----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-AT--A-C-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACG-GGAC----------ACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATAATAAAA----------AGAAAAAGAGA-CATGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTATTTTTNTTTCGGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
gi|1 : GCATGGATGTGGAATTAGTATGCCCGACTCGCTCGATTTGTACATTTGTTGAACGGGACAAGT---A-CCTTT--TTGGTGCT------ACATGTAGTTGTCCGTGGACAAGTGAAAAAAA--TGACCATGTCCACATTTTGGGAGTGCGAAAATTTGATGTGAGG-CAATCTAAATT--AAA--------GATAAATA-GATACTAAAATGG------GTAAATATA------TACTACTT----G------CT----ACT--TGATA-AATTTAT-TGACA-GCCTAA-AATAGC-GATGTTTTACACACGTATTCC------GATAT-TGAGTA---A----------GTTACAAA-TT-CAGAGCCTTAATCTATGA----A----G--ATAAACAATGCAA--AAATAGGA------GG----TTTTTTTTT-ATTCG--A-T-ACGTTATT-TTCACATATGA--T-AT--A-G-AAATTATTTTATGCATATAA-CCCGAAAATATGTGTGCACACGG-ACT-GAC--------------------A-AAGAA------AT------CACT-TCG--GCACACACA----------------------------------------GGTCTGAAGC----CAGATATAA
gi|10 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaataC-GATGTTTTATACATGTACT-TATACTTGATTT-CTGACA---T----------ATCATAAA-TC-CCGAGCTCGAATCTATGA----A----G--A-------T------AAACAG-----------------TTCTTTAATTCG--A-T-ACACTATT-GTTGTATATGA--T-ATATA-C-AAATTATTTTTCACATATAACCCCCAAAACATTTGTGCACATG------GACA-GGTC----------A-TAA-AATAACT----ATCAGTAACACC-TTA--GTGCACACATGTA----GCCAA-G-TTA--GCT-------------a
gi|11 : TTTCTAATCCG--AGT-ACACTATT-GTCACAAGTGA--TTAT--AGC-AAATTATTT-ACACATATAACCTCCAAAATATTTGTACATACGGGACT-GACA-CGACTAACATTGGCACTAA-AAGAACTCAAGATCAGTCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GC
gi|12 : TTGTAAT-TGCA-------AAACTATCATTGC-TAGATACTTTTGGTT-CTTTTAATAAAA----------AAAAAA------CCT--------TTT-TCTACTCGTA-AG-GTCTGGATCGACA----AG------TTATTTTTA-TTCGGACAGGGTGAA-A--TTCCCA--A-------TT----AC---CTTG----TAAGTGC--CCTCACTTGA-ATTTCCACAaattggaaaaacaggatgttaatttgacatta
gi|13 : AATTGGAAA-AACAGGATGTTAATTTGACATTATTCAGG-ACTTT-GGTT
gi|13 : gcTTT-TCTG----CA-AAAGT-TGG-----CA----AG------TTACTTTTTCT--GGACA-AGTGAA-A--TTTCC---ATTATTACTT----GC---CGGGGG-ACAAGTGCTGTTTCTCTAGATATTTCC-CACCCCTGttttctgcaaaagttggcaagttactttttctggacaagtgaaatttccattattacttgccgggggacaagtgctgtttctctagatatttcccacccctg
gi|14 : gcaattggaaaaacaggatgttaatttgacattattcaggactttggttAAAAAGAAATCATG--CGA-ATTTCTGT-----TA-AAAGTCTGG-----CG----A---------ATTTTTTTT--GGACA-AGTTAAGA--TTTCC---A-------TT----ACATCCTGGG--ACAAGTGC--TCTCAC
gi|16 : aaaaatttgcgagagcatACC-GATCTTTTATACATTGATT-T------CATTT-CCGTTA---A----------GTAATAAA-TC-C--AGCCCAAATCTATGA----A----AATA-----AACACAA--
gi|17 : GG--------------ATAATATTTCTAATCATTTATAAAAGGG------------TCAAAGCAATTGAAAAAtataa
gi|2 : GCATGGGTGTGGAATTAGTATGTCCGACTCGCTCAACTTGTACATTTGTTGAACCGGACAAGT---G-CCTTT--TTGGTGCT------AG-T-----TGTCCGTTGACAAGTGAAAAGAA--TGACCATATCCAAATTTTGGGAGTGCGAAAATTTGATACGAGG-CAATCTAAATT--AAAGAT--------AAAAA-GATAC-TAAAAAG------GTAA----A------TACTACTTAATTG------TT----ACT--TGATA-AATTTAT-TGACA-G-CCAAGACTACA-TATGTTTTATACACGAACT-CC-----GATAT-TGAGTA---A----------GTTATAAA-TT-CAGAGCCTGAAT-TATGAGGATA----A--AC----AATGTAA--AAATAGGAGTAT-T------TTTTTTTTTAATTCG--A-T-ACGTTATT-TTCACATATGA--T-AT--A-G-AAATTATTTTATGCATATAA-CCCGAAAATAGTTGTGCACACGG-ACT-GACA-G--------------------AGAA------AT------CACT-TCT--GCACACACAGGTCTGAAGCCAA-A-Taaca
gi|3 : caatgctatttactcagtttcaaatattcagttcgcataggttcccagatgggtatcatcggtgttacgaggcatcgcactcaattatttcaaagtatttttccccacgatttgacgttcaattacatcacaatacaagtacatggttttcaagctgtgatataaatccaccgtgtttttgctatttaatctatgtagaactgtcccttcaccttttctttttcattcatgattgccgatttaaatcttaatttgtcatgcaagggttcagacaaccggactcagaagaggaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgttatgcaagaaatactggcctacatcagtaGCAGGGGTGTGGAAATAGTATTCCTGACT---------TGTACAGTTGTTGAACAGGAGAATT---AATTTTT--TTAGTGTT------AT-T-----TGTCTGTGGACAAGTGAAAA-AA--TGACCATGCCAGTATCTTTAGAATACGAAAATTTGATGTGAGG-CAATCTAAATT--CAAAATGCATCAATAAAAA-GATATTTAAAAGG------GTAA----A------TACAACTT----G------CT----ACT--TGGTA-AG---------CA-G-CTAACACTACC-AATGATTTA----CGT--T-T------AATTG-CCGGTA---A----------ATGATAAA-TCAC-GAGCTCGAATGTATGA----A----A--A-----AAGGCAA--AATT-GGAGTACCTGA----TTTTTTTTTTTTTTTTTA-T-ATGTTATT-GTTGCACA--A--T-AT--G-C-AAATTATTATACACACATAGCCCCCAAAATATTTGTGCACATGG-ACT-GACATGGAC----------ACCAG-AAAAACTCGCAATTGGTCACATC-TCA--GTGCACAT--GCC----GCCGA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------GTTATATTTCTAATCATTTATAACGGGGTCAAAGAAAAACTCAAAGCATTTAAAAAA--GGCTCTAAAATTGAAAT-AACA-------AAATTGACATTTT-TAGG-ACTTT-GATTACTTATAAAAAAAAAAGAGAGAGAGAGAGAGAGA-CAAGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTACTTTTCTTTCGGACA-AGTGAA-A--TTTTC---A-------CT----GC---AAGAAGTGCAAGTGC--TCTCCCTAGAAATTTCCACACCCCTGata
gi|4 : GGGTGT--AAATA-TATGCCCGACT---------TGTATATT-GATAAACCGG-CACAT---AACATTTGTTTGG-GTTTAGTTAATAT-----TGTCTGTG--CAAGTGAAAA-AAAATTACCAAGCCCCTATTTTGG-AGTGCGAAATTCCGTTGTGAAG-CAATCTAAGTTTAAAAAATT-G--AATGAAAA-GATACC-----------------------------GCCACTT----G------CT----ACTGTC-ATACAACTTAT--GACAAG-CTAAC--TA----ATTTTTTACATA-GTATT-T------GATTTCCCGGTACTTAATACTTGATTATAATAAA-TC-C-AGATCCG-ATCTTTGA----G----A--ATAAACGATGCAATCAAATA--AATAC-TGAAGTTTTCTTTTTTAATC----A-TAACGTTATTGGTCGCATAACAATT-AT--A-CAAAATTATTTTA-GC---TAAATCCCAAAATATTAGCACA-AAAG-ACTAGATG-GGAC----------ACCGATCAGAACTCACGATCATCCACACCTTCAGCGCGCACACAGGTT-----CCAA-GATTATGGCT-------------GTTGATCTGAAGC----CAAAATTATTTGAGAGAAAGAATCATACCCAGGATATAATATGTCTAATCATTTACAAC-AGGTCAAATAAAAATTTAAAACA----AGAGAC-GGCTAGATAAATGAAATAAACA-------AAATTGACACTA---AGG-ACTTT---TTACTT-TGAT------------------AAAGAGA-CCTGGT--A-ATTT-TTT-----TGTAAATTCTGGAAG--CA----A--------TATTTTT
gi|5 : agAA--AAAAAGGAGTGC-CTA----TTATTTTTTAATCAG--A-T-ACGCTATT-TTTGCATAT-A--T-AT--G-------------------ATA-CTCCCAAAATATTTGTGCACATGA-ACT-GACACGGAC----------GCTAA-ATGAACTCGCAACCAGTCACACT-TCA--ACGCACACAGGTC----GCCAATGTTTA--GTTGACAGTCAGATGAGTCTGTCAGAAGC----CAGA-ATTATTGAGGTGAAGG-----------------ATATTTCTAATCAT
gi|5 : gggCGGGGTCAAATAAAACCTCAAAGCAA---A---------TATCAG---GCAGT-A--A-------AAATTAACATTAT-CAAT-ACTTT-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattatcaatactttgtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|5 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAATTAA-CATTATCAATACTT-TGT--------AAAGTCTGGA----CATTTTAGCCAAATTTTTTTTTTTTTTGGACA-AGTGAA-AATTTTCC---A-------TTATTTGC---CTGGGG-ACAAGTGC--TCTCCCTAGATATTTCCACACCCtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|6 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagt----------ACCAA-CAGAACTCACGATCAATCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GCC-------------ATCGGTCAGAAGC----CAGAAATAATTGACAT--------------------TAACATTTCTAATCATTTATAACAGGGTCAAATAAAATCTTAAAGCAATTGAAAAACAGGCTGTAAAATTGAAGT-AACA-------AAATTGACAATAT-CATG-ACGTT-CATTACTTAT--------------------AAAAGAGA-CATAATAAA-ATTT-TCTG----TA-AAA-TCTAAA----CA----AG------TAAATTTT-TCCCGGACT-AGTGAA-A--TTTTCATTA-------TT----GT---TTGGAG-ACAAGTGC--TTTCACTAGATATTTCCACACCC
gi|7 : AAAACTCACGATCAGTCACACC-TAA--GTGCACACAAGTT----G-CAA-A-TTA--GCT-------------GGGAGTCTGAAGTCATGCAGATATA---GAGATAAAGA--------------ATAATATTTCTAATCATTTATAAAAGGGTCAAACAAATACTCAAAGCAATTGAAAAAC-AGATATAAAATTGAAA---------------------ATTAC-TAGG-ACTTT-GGTTACTTAT-GTGTAA----------TGAAGA--AGA-CATGGCAAA-ATTT-TCT-----TC-AAA--TTGAAT---TA----AA------TTATT----TTCCGGACA-AGT-AA-A--TTTCC---ATTAGTACTT----GC---CTGGGG-ACAAGTGA--TCTCACTCGATATTTCCTCACCCC
gi|8 : AGTGAAAA-AAAATGACCATGTTCTT-CCTTGAGAGTGC-AAAATTCTATGTGAGGGCAATTTAA-TT--AAAGATGTGTCAAATAAAA-GATACCTAAACTGTTACATGTAA----AGAATAATACAACTT----GATGATACTGAGCACT--CAATA-AATTTATGCGACA-G-CTAACATTACCAGATGTTTTATACATGTACT-T------GATTT-CCTGTA---A----------ATAATAAATTC-C-AAGCCCGAATCTATGA----AGGATA--AAC---AATGCAA--AAATTGGA
gi|9 : ACGGGTGTGGAATTAGTATGCCTGACTC---------ATGCACTTGTGGAACTGGACGATTCTAAACTATT--TTAGATTT------AG-T-----TGTCCGTGGACAAGTGGAAA-AA--AAA--AGGC-----------GAGTGCAAAAATTCAATGCGAAG-CAATCTAAATT--AAAGTTGAGTCAATAAAAAGGATAGCTAAa
gi|9 : tggaaaattaatacagaaccaatgGATA-G-CTAACATTACT-GATGTTTTATACATGTACT-T------GATTT-GCAGTA---A----------ATAATTAA-Tcattactgatgttttatacatgtacttgatttgcagtaaataattaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGAGAGAGAGAGAGAGAGAGGACGTTGATGTGATCCTAAAATGGACTAAATTTTTATTTCAGGAAAAGTGAACGTTTTTCCTGCA
Unaligned ( gi|18 ): ATAAAAGGGTCAAAACAATTGAAAAAACATATG
Alignments
lowQualScore : 777777777 11111 11 444444444444444 1 11 33333 4444444444444444444444444444444444444444444444444 1111 2222222 111111 22222222222222 11 5555555555555555555 333333333333 111111 3333333333333333333 3333333333333 1111 444444444444444 11 1111111111111 7777777777777777777 1111111 22222222 33333333333333333333 1 44444444444 1111 111
lowQualScore : 4 1 111111111 0 3 0 1 88888 1 11 6 666666666666666 3 88 1 888 1 0 6 1 77 1 77777 5 33 4444444444444444444444444444444444444444444444444 0000 6 0000000 6 6 555 0 5 0 4 5 999999 5 44444444444444 1 5 5 88 0 3333333333333333333 66 1 0 777777777777 1 1 8888 5 5 66 66 77 5 888888 1 55 1 88 0 5 5 3333333333333333333 5 1 9999 2 0 4 66 2 9999 999 66 1111111111111 1 4444 7 3 3 444444444444444 6 1 3 66 1 1 33 0 9999999999999 888 5 66 0 6 3333333333333333333 55 5 6666666 5 55555555 5 44444444444444444444 0 9 5 0 5 77 33333333333 2222 000 888 77 1 3 3
lowQualScore : . . ......... . . . . ..... . .. . ............... . .. . ... . . . . .. . ..... . .. ................................................. .... . ....... . . ... . . . . . ...... . .............. . . . .. . ................... .. . . ............ . . .... . . .. .. .. . ...... . .. . .. . . . ................... . . .... . . . .. . .... ... .. ............. . .... . . . ............... . . . .. . . .. . ............. ... . .. . . ................... .. . ....... . ........ . .................... . . . . . .. ........... .... ... ... .. . . .
lowQualScore : 2 4 222222222 8 2 8 0 66666 4 00 0 444444444444444 3 33 0 333 0 7 7 7 99 7 11111 7 44 7777777777777777777777777777777777777777777777777 8888 7 8888888 7 7 333 7 0 9 2 0 444444 0 99999999999999 0 0 7 99 7 9999999999999999999 99 7 7 222222222222 8 7 0000 7 7 44 00 99 7 999999 4 77 4 00 4 7 7 6666666666666666666 0 1 6666 9 1 4 11 9 4444 777 99 4444444444444 0 2222 8 5 8 888888888888888 3 5 3 77 0 7 00 3 3333333333333 444 7 44 8 0 0000000000000000000 77 7 3333333 0 44444444 6 22222222222222222222 2 3 7 7 7 99 99999999999 1111 000 111 99 6 5 5
consensus : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTC-A-TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTAC-TGA----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-AT--A-C-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACA-GGAC----------ACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATAATAAAA----------AGAAAAAGAGA-CATGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
Reference ( family-8876 ) : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTCA--TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTAC-TGA----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-AT--A-C-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACA-GGAC----------ACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATAATAAAA----------AGAAAAAGAGA-CATGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
gi|1 : GCATGGATGTGGAATTAGTATGCCCGACTCGCTCGATTTGTACATTTGTTGAACGGGACAAGT---A-CCTTT--TTGGTGCT------ACATGTAGTTGTCCGTGGACAAGTGAAAAAAA--TGACCATGTCCACATTTTGGGAGTGCGAAAATTTGATGTGAGG-CAATCTAAATT--AAAG--------ATAAATA-GATACTAAAATGG------GTAAATATA------TACTACTT----G------CT----ACT--TGATA-AATTTAT-TGACA-GCCTAA-AATAGC-GATGTTTTACACACGTATTCC------GATAT-TGAGTA---A----------GTTACAAA-TT-CAGAGCCTTAATCTATGA----A----G--ATAAACAATGCAA--AAATAGGA------GG----TTTTTTTTT-ATTCG--A-T-ACGTTATT-TTCACATATGA--T-AT--A-G-AAATTATTTTATGCATATAA-CCCGAAAATATGTGTGCACACGG-ACT-GAC--------------------A-AAGAA------AT------CACT-TCG--GCACACACA----------------------------------------GGTCTGAAGC----CAGATATAA
gi|10 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaataC-GATGTTTTATACATGTACT-TATACTTGATTT-CTGACA---T----------ATCATAAA-TC-CCGAGCTCGAATCTATGA----A----G--A-------T------AAACAG-----------------TTCTTTAATTCG--A-T-ACACTATT-GTTGTATATGA--T-ATATA-C-AAATTATTTTTCACATATAACCCCCAAAACATTTGTGCACATG------GACA-GGTC----------A-TAA-AATAACT----ATCAGTAACACC-TTA--GTGCACACATGTA----GCCAA-G-TTA--GCT-------------a
gi|11 : TTTCTAATCCG--AGT-ACACTATT-GTCACAAGTGA--TTAT--AGC-AAATTATTT-ACACATATAACCTCCAAAATATTTGTACATACGGGACT-GACA-CGACTAACATTGGCACTAA-AAGAACTCAAGATCAGTCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GC
gi|12 : TTGTAAT-TGCA-------AAACTATCATTGC-TAGATACTTTTGGTT-CTTTTAATAAAA----------AAAAAA------CCT--------TTT-TCTACTCGTA-AG-GTCTGGATCGACA----AG------TTA-TTTTTATTCGGACAGGGTGAA-A--TTCCCA--A-------TT----AC---CTTG----TAAGTGC--CCTCACTTGA-ATTTCCACAaattggaaaaacaggatgttaatttgacatta
gi|13 : AATTGGAAA-AACAGGATGTTAATTTGACATTATTCAGG-ACTTT-GGTT
gi|13 : gcTTT-TCTG----CA-AAAGT-TGG-----CA----AG------TTACTTTTTCT--GGACA-AGTGAA-A--TTTCC---ATTATTACTT----GC---CGGGGG-ACAAGTGCTGTTTCTCTAGATATTTCC-CACCCCTGttttctgcaaaagttggcaagttactttttctggacaagtgaaatttccattattacttgccgggggacaagtgctgtttctctagatatttcccacccctg
gi|14 : gcaattggaaaaacaggatgttaatttgacattattcaggactttggttAAAAAGAAATCATG--CGA-ATTTCTGT-----TA-AAAGTCTGG-----CG----A---------ATTTTTTTT--GGACA-AGTTAAGA--TTTCC---A-------TT----ACATCCTGGG--ACAAGTGC--TCTCAC
gi|16 : aaaaatttgcgagagcatACC-GATCTTTTATACATTGATT-T------CATTT-CCGTTA---A----------GTAATAAA-TC-C--AGCCCAAATCTATGA----A----AATA-----AACACAA--
gi|17 : GG--------------ATAATATTTCTAATCATTTATAAAAGGG------------TCAAAGCAATTGAAAAAtataa
gi|2 : GCATGGGTGTGGAATTAGTATGTCCGACTCGCTCAACTTGTACATTTGTTGAACCGGACAAGT---G-CCTTT--TTGGTGCT------AG-T-----TGTCCGTTGACAAGTGAAAAGAA--TGACCATATCCAAATTTTGGGAGTGCGAAAATTTGATACGAGG-CAATCTAAATT--AAAGAT--------AAAAA-GATAC-TAAAAAG------GTAA----A------TACTACTTAATTG------TT----ACT--TGATA-AATTTAT-TGACA-G-CCAAGACTACA-TATGTTTTATACACGAACT-CC-----GATAT-TGAGTA---A----------GTTATAAA-TT-CAGAGCCTGAAT-TATGAGGATA----A--AC----AATGTAA--AAATAGGAGTAT-T------TTTTTTTTTAATTCG--A-T-ACGTTATT-TTCACATATGA--T-AT--A-G-AAATTATTTTATGCATATAA-CCCGAAAATAGTTGTGCACACGG-ACT-GACA-G--------------------AGAA------AT------CACT-TCT--GCACACACAGGTCTGAAGCCAA-A-Taaca
gi|3 : caatgctatttactcagtttcaaatattcagttcgcataggttcccagatgggtatcatcggtgttacgaggcatcgcactcaattatttcaaagtatttttccccacgatttgacgttcaattacatcacaatacaagtacatggttttcaagctgtgatataaatccaccgtgtttttgctatttaatctatgtagaactgtcccttcaccttttctttttcattcatgattgccgatttaaatcttaatttgtcatgcaagggttcagacaaccggactcagaagaggaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgttatgcaagaaatactggcctacatcagtaGCAGGGGTGTGGAAATAGTATTCCTGACT---------TGTACAGTTGTTGAACAGGAGAATT---AATTTTT--TTAGTGTT------AT-T-----TGTCTGTGGACAAGTGAAAA-AA--TGACCATGCCAGTATCTTTAGAATACGAAAATTTGATGTGAGG-CAATCTAAATT--CAAAATGCATCAATAAAAA-GATATTTAAAAGG------GTAA----A------TACAACTT----G------CT----ACT--TGGTA-AG---------CA-G-CTAACACTACC-AATGATTTA----CGT--T-T------AATTG-CCGGTA---A----------ATGATAAA-TCAC-GAGCTCGAATGTATGA----A----A--A-----AAGGCAA--AATT-GGAGTACCTGA----TTTTTTTTTTTTTTTTTA-T-ATGTTATT-GTTGCACA--A--T-AT--G-C-AAATTATTATACACACATAGCCCCCAAAATATTTGTGCACATGG-ACT-GACATGGAC----------ACCAG-AAAAACTCGCAATTGGTCACATC-TCA--GTGCACAT--GCC----GCCGA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------GTTATATTTCTAATCATTTATAACGGGGTCAAAGAAAAACTCAAAGCATTTAAAAAA--GGCTCTAAAATTGAAAT-AACA-------AAATTGACATTTT-TAGG-ACTTT-GATTACTTATAAAAAAAAAAGAGAGAGAGAGAGAGAGA-CAAGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTACTTTTCTTTCGGACA-AGTGAA-A--TTTTC---A-------CT----GC---AAGAAGTGCAAGTGC--TCTCCCTAGAAATTTCCACACCCCTGata
gi|4 : GGGTGT--AAATA-TATGCCCGACT---------TGTATATT-GATAAACCGG-CACAT---AACATTTGTTTGG-GTTTAGTTAATAT-----TGTCTGTG--CAAGTGAAAA-AAAATTACCAAGCCCCTATTTTGG-AGTGCGAAATTCCGTTGTGAAG-CAATCTAAGTTTAAAAAATT-G--AATGAAAA-GATACC-----------------------------GCCACTT----G------CT----ACTGTC-ATACAACTTAT--GACAAG-CTAAC--TA----ATTTTTTACATA-GTATT-T------GATTTCCCGGTACTTAATACTTGATTATAATAAA-TC-C-AGATCCG-ATCTTTGA----G----A--ATAAACGATGCAATCAAATA--AATAC-TGAAGTTTTCTTTTTTAATC----A-TAACGTTATTGGTCGCATAACAATT-AT--A-CAAAATTATTTTA-GC---TAAATCCCAAAATATTAGCACA-AAAG-ACTAGATG-GGAC----------ACCGATCAGAACTCACGATCATCCACACCTTCAGCGCGCACACAGGTT-----CCAA-GATTATGGCT-------------GTTGATCTGAAGC----CAAAATTATTTGAGAGAAAGAATCATACCCAGGATATAATATGTCTAATCATTTACAAC-AGGTCAAATAAAAATTTAAAACA----AGAGAC-GGCTAGATAAATGAAATAAACA-------AAATTGACACTA---AGG-ACTTT---TTACTT-TGAT------------------AAAGAGA-CCTGGT--A-ATTT-TTT-----TGTAAATTCTGGAAG--CA----A--------TATTTTT
gi|5 : agAA--AAAAAGGAGTGC-CTA----TTATTTTTTAATCAG--A-T-ACGCTATT-TTTGCATAT-A--T-AT--G-------------------ATA-CTCCCAAAATATTTGTGCACATGA-ACT-GACACGGAC----------GCTAA-ATGAACTCGCAACCAGTCACACT-TCA--ACGCACACAGGTC----GCCAATGTTTA--GTTGACAGTCAGATGAGTCTGTCAGAAGC----CAGA-ATTATTGAGGTGAAGG-----------------ATATTTCTAATCAT
gi|5 : gggCGGGGTCAAATAAAACCTCAAAGCAA---A---------TATCAG---GCAGT-A--A-------AAATTAACATTAT-CAAT-ACTTT-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattatcaatactttgtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|5 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAATTAA-CATTATCAATACTT-TGT--------AAAGTCTGGA----CATTTTAGCCAAATTTTTTTTTTTTTTGGACA-AGTGAA-AATTTTCC---A-------TTATTTGC---CTGGGG-ACAAGTGC--TCTCCCTAGATATTTCCACACCCtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|6 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagt----------ACCAA-CAGAACTCACGATCAATCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GCC-------------ATCGGTCAGAAGC----CAGAAATAATTGACAT--------------------TAACATTTCTAATCATTTATAACAGGGTCAAATAAAATCTTAAAGCAATTGAAAAACAGGCTGTAAAATTGAAGT-AACA-------AAATTGACAATAT-CATG-ACGTT-CATTACTTAT--------------------AAAAGAGA-CATAATAAA-ATTT-TCTG----TA-AAA-TCTAAA----CA----AG-------TAAATTTTTCCCGGACT-AGTGAA-A--TTTTCATTA-------TT----GT---TTGGAG-ACAAGTGC--TTTCACTAGATATTTCCACACCC
gi|7 : AAAACTCACGATCAGTCACACC-TAA--GTGCACACAAGTT----G-CAA-A-TTA--GCT-------------GGGAGTCTGAAGTCATGCAGATATA---GAGATAAAGA--------------ATAATATTTCTAATCATTTATAAAAGGGTCAAACAAATACTCAAAGCAATTGAAAAAC-AGATATAAAATTGAAA---------------------ATTAC-TAGG-ACTTT-GGTTACTTAT-GTGTAA----------TGAAGA--AGA-CATGGCAAA-ATTT-TCT-----TC-AAA--TTGAAT---TA----AA------TTA----TTTTCCGGACA-AGT-AA-A--TTTCC---ATTAGTACTT----GC---CTGGGG-ACAAGTGA--TCTCACTCGATATTTCCTCACCCC
gi|8 : AGTGAAAA-AAAATGACCATGTTCTT-CCTTGAGAGTGC-AAAATTCTATGTGAGGGCAATTTAA-TT--AAAGATGTGTCAAATAAAA-GATACCTAAACTGTTACATGTAA----AGAATAATACAACTT----GATGATACTGAGCACT--CAATA-AATTTATGCGACA-G-CTAACATTACCAGATGTTTTATACATGTACT-T------GATTT-CCTGTA---A----------ATAATAAATTC-C-AAGCCCGAATCTATGA----AGGATA--AAC---AATGCAA--AAATTGGA
gi|9 : ACGGGTGTGGAATTAGTATGCCTGACTC---------ATGCACTTGTGGAACTGGACGATTCTAAACTATT--TTAGATTT------AG-T-----TGTCCGTGGACAAGTGGAAA-AA--AAA--AGGC-----------GAGTGCAAAAATTCAATGCGAAG-CAATCTAAATT--AAAGTTGAGTCAATAAAAAGGATAGCTAAa
gi|9 : tggaaaattaatacagaaccaatg--AAAAAT---TCAATGCGAA-GCAATCTAAAT---------TAA----A------G-----TT----G------------AGT--CAATA-AA---AA-GGATA-G-CTAACATTACT-GATGTTTTATACATGTACT-T------GATTT-GCAGTA---A----------ATAATTAA-Tcattactgatgttttatacatgtacttgatttgcagtaaataattaat
blockSeqs : T T CGCTCAACT C G CTAAA C GT T TAGTTAATAT G AA C AAA G G A TA A GCATC G TT CTGTTACATGTAAAGAATAATACAACTTGATGATACTGAGC GTC C TTTATGC A . GAC A T . ATACTT C CTTAATACTTGATT C T A CG AGGATAAACA TC A ATACTGAAGTT T A TTTT G A GG TG AT T ATAC T CA A AC G A ACGACTAACATTGGCACT T C CAAG C T GC T TGAA TGT TG GACAGTCAGATGA C CATG T A A ATCATACCCAGGATA G G A TT A A CA AAACAGGATGTT TTC . G A AAAAAAAAAAGAGAGAGAG AG T TATCAAT C GCA G ACATTTTAGCCAAATT C T . G AT ATTATTAC ATTT ATC AGT TG T T A
blockSeqs : G A C A T AA T . T AGT . AA C GTA G . A . A GTGTC . CT AAGGTAAATACTACTTAATTGTT TG . TTTATT . . CAC . T . C . T A . . AG GGATAAACA . A GTACCTGA T A CG . . G TG . . AGC T CA A AC . . ATGGACACC . C CGCA C . . G . GA . . T . A T G G G T A AT G G C TAAACA TT . G A GTGTAATG AG . GGTCAA . TGT G ATTAAAT T T . . . ATTAGTAC . . GG . A A A
blockSeqs : C A . C A AA A . A ATT . . C CTA G . G . A GAGTC . CT AGGGTAAATACAACTTGCT TG . CTTAT . . CAT . C . . . A T . . G GAATAAACG . A GTGCCTA C A CG . . G TG . . ACA T TG A GC . . ACGGACGCT . C CACG T . . G . G . . C . A A A A A T C AT G A C TAACA TC . G A GAT AG . AATAAA . GTA G ACAAGT C C . . . ATTA . . GG . C T A
blockSeqs : T . T T G T . . AGT . . T TT A . A . A TG . CT GCCACTTGCT CA . AAG . . CAT . C . . . A G . . A AAATAA . A GTATT A T CG . . T AC . . AG T CA A AA . . GGGACACC . C CGCA C . . G . G . . C . T A . . A T T A . A . TAACA TC . C . . AT . GGCAAA . TA T AAGCAA T C . . . A . . AG . C T T
blockSeqs : . . . . . . . . T TC . T TTAAAGTTG CA . . . . C . T . . . A A . . A AAAA . T . . A AG . . G T . . GC . G . A . . AGGTCAT . C CACG C . . G . A . . G . . . . . C A . . . TAA CT . G AG . GCGA . TA G CAAGT T . . . . A . . GG . A T .
blockSeqs : . A . . C . T . . . A A . . . AGA . . A . . . T . . . G . . . C . . AG . C CACG C . . G . G . . . . . . . . GGTA . TC . ACAAG A . . . . A . . G . A
blockSeqs : . . . . . A A . . . C . C . . A . G . . . . CGA .
blockSeqs : . . . . . . . A
blockSeqCons : C******** AA*** AGT************ GGTC* NGGTAAATACNACTTGCT******************************* CAC G* GTACCTA***** AGC*** AC ACGGACACT********** CGCG G** C* G* GA***************** AG GGTNAA* TA****** ACAAGT************** ATTATAC**** GG*
originalCons : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTC-A-TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTT------ANAT-----TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAANGG------GTAA----A------TACNACTT----G------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTAC-TGA----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-AT--A-C-AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACA-GGAC----------ACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTTATAATAAAA----------AGAAAAAGAGA-CATGGTCAA-ATTT-TCT-----TA-AAAGTCTGGA----CA----AG------TTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC---A-------TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
finalCons : GCACGGGTGTGGAATTAGTATGCCCGACTC--------TGTACATTTGTTGAACCGGACAANTAA---CCTTT--TTGGTGTTAGT------------TGTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATGGTC-AATAAAAA-GATACCTAAANGGTAAATACNACTTGCT-------------------------------ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-CG-AGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTACCTA-----TTTTTTTTTAATCCG--A-T-ACGCTATT-GTCGCATATGA--T-ATAGC---AAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACACGGACACT----------AA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAAG--TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTTG-GTTACTTATGA-----------------AAAAAGAGA-CATGGTNAA-ATTT-TCTTA------AAAGTCTGGACAAGT--------------TATTTTTTTTTCGGACA-AGTGAA-A--TTTCCATTATAC----TT----GC---CTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGAGAGAGAGAGAGAGAGAGGACGTTGATGTGATCCTAAAATGGACTAAATTTTTATTTCAGGAAAAGTGAACGTTTTTCCTGCA
Unaligned ( gi|18 ): ATAAAAGGGTCAAAACAATTGAAAAAACATATG
Alignments
lowQualScore : 6666666666 11111 11 222222 222222 1 11 4444444 6666666666666666666666666666666666666666666666666666 1111 2222222 11111111 22222222222222 11 5555555555555555555 4444444444 1111 2222 444444444444444444 3333333333333 1111 444444444444444 11 1111111111111 9999999999999999999999999999999999999999999999999999999 22222 22222 11 1 33333
lowQualScore : 4 1 8888888888 0 3 0 1 88888 1 11 1 333333 333333 3 88 1 888 1 0 6 1 77 0000000 5 5 1 2222222222222222222222222222222222222222222222222222 0000 6 0000000 6 6 555 0 5 0 4 99999999 5 44444444444444 1 5 5 88 0 3333333333333333333 66 1 0 9999999999 1 1 3 5 5 66 2222 4 5 3333 1 55 1 88 0 5 5 222222222222222222 5 1 9999 2 0 4 66 2 9999 999 66 1111111111111 1 4444 7 3 3 444444444444444 6 1 3 66 1 1 33 0 9999999999999 888 5 9999999999999999999999999999999999999999999999999999999 5 1 22222 5 5 55555 00 0 9 5 0 5 77 5 22222 1 66 77 1 3 3
lowQualScore : . . .......... . . . . ..... . .. . ...... ...... . .. . ... . . . . .. ....... . . . .................................................... .... . ....... . . ... . . . . ........ . .............. . . . .. . ................... .. . . .......... . . . . . .. .... . . .... . .. . .. . . . .................. . . .... . . . .. . .... ... .. ............. . .... . . . ............... . . . .. . . .. . ............. ... . ....................................................... . . ..... . . ..... .. . . . . . .. . ..... . .. .. . . .
lowQualScore : 2 4 8888888888 8 2 8 0 66666 4 00 0 000000 000000 3 33 0 333 0 7 7 7 99 1111111 7 3 7 0000000000000000000000000000000000000000000000000000 8888 7 8888888 7 7 333 7 0 9 2 11111111 0 99999999999999 0 0 7 99 7 9999999999999999999 99 7 7 7777777777 8 7 0 7 7 44 1111 3 7 9999 4 77 4 00 4 7 7 777777777777777777 0 1 6666 9 1 4 11 9 4444 777 99 4444444444444 0 2222 8 5 8 888888888888888 3 5 3 77 0 7 00 3 3333333333333 444 7 4444444444444444444444444444444444444444444444444444444 0 4 55555 0 6 88888 88 2 3 7 7 7 99 7 11111 6 44 99 6 5 5
consensus : GCACGGGTGTGGAATTAGTATGCCCGACTCGCTC-A-TTGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTTA------GTT------GTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAA--N-G------G-TAA----A------TACNAC----TTG------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTACCTG----TTTTTTTTTAATCCGA-T-ACGCTATT-GTCGCAT----ATGAT-ATA-GCAAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACG-G---------GACACCAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTT---ATG---AAAAA-----------------AG-AGA-CATGGT-AAATTT-TCT-----TA-AAAGTCTGGA----CAAGTTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC-ATTA-TACTTGCCTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
Reference ( family-8876 ) : GCACGGGTGTGGAATTAGTATGCCCGACTC--------TGTACATTTGTTGAACCGGACAANT---AACCTTT--TTGGTGTTA------GTT------GTCCGTGGACAAGTGAAAA-AA--TGACCATGCCCNTATTTTGGGAGTGCGAAAATTCGATGCGAGG-CAATCTAAATT--AAAGATG-GTCAATAAAAA-GATACCTAAA--N-G------G-TAA----A------TACNAC----TTG------CT----ACT--CGATA-AATTTAT-CGACA-G-CTAACACTACC-GATGTTTTATACACGTACT-T------GATTT-CCGGTA---A----------ATNATAAA-TC-C-GAGCCCGAATCTATGA----A----A--A-----AATGCAA--AAATAGGAGTACCTA----TTTTTTTTTAATCCGA-T-ACGCTATT-GTCGCAT----ATGAT-ATA-GCAAATTATTTTACGCATATAACCCCCAAAATATTTGTGCACACGG-ACT-GACACG---------GACACTAA-AAGAACTCGCGATCAGTCACACC-TCA--GCGCACACAGGTC----GCCAA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------ATAATATTTCTAATCATTTATAACGGGGTCAAATAAAAACTCAAAGCAATTGAAAAAC-GGCTATAAAATTGAAAT-AACA-------AAATTGACATTAT-CAGG-ACTTT-GGTTACTT---ATG---AAAAA-----------------AG-AGA-CATGGTNAAATTT-TCT-----TA-AAAGTCTGGA----CAAGTTATTTTTTTTTCGGACA-AGTGAA-A--TTTCC-ATTA-TACTTGCCTGGGG-ACAAGTGC--TCTCACTAGATATTTCCACACCCCTG
gi|1 : GCATGGATGTGGAATTAGTATGCCCGACTCGCTCGATTTGTACATTTGTTGAACGGGACAAGT---A-CCTTT--TTGGTGCTACATGTAGTT------GTCCGTGGACAAGTGAAAAAAA--TGACCATGTCCACATTTTGGGAGTGCGAAAATTTGATGTGAGG-CAATCTAAATT--AAAG--------ATAAATA-GATA-CTAAAATG-G------G-TAAATATA------TACTAC----TTG------CT----ACT--TGATA-AATTTAT-TGACA-GCCTAA-AATAGC-GATGTTTTACACACGTATTCC------GATAT-TGAGTA---A----------GTTACAAA-TT-CAGAGCCTTAATCTATGA----A----G--ATAAACAATGCAA--AAATAGGAG-----G----TTTTTTTTT-ATTCGA-T-ACGTTATT-TTCACAT----ATGAT-ATA-G-AAATTATTTTATGCATATAA-CCCGAAAATATGTGTGCACACGG-ACT-GAC-------------------A-AAGAA------AT------CACT-TCG--GCACACACA----------------------------------------GGTCTGAAGC----CAGATATAA
gi|10 : ttcaaatattcagttcgcataggttcccatgatgggtatctttgtttcctaattatcggagttacgaggcatcacatgcaattatttcaaagcatttgtttcccacgattcgattttcgattacatcacaatacaagtacagggttttcaagctgtgatagaaattcaccatgcgtttgctatgtaatctatgttgagccgtctcttccccttttctttttcattcatgattaccggtttaaatcttaatttgtcacccaaaggttcggacaacaggacgcagaagagtaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgtaatgcaagaaatactggcctacttcaataC-GATGTTTTATACATGTACT-TATACTTGATTT-CTGACA---T----------ATCATAAA-TC-CCGAGCTCGAATCTATGA----A----G--A-------T------AAACAG----------------TTCTTTAATTCGA-T-ACACTATT-GTTGTAT----ATGAT-ATATACAAATTATTTTTCACATATAACCCCCAAAACATTTGTGCACATGG-AC---A---G---------GTCA-TAA-AATAACT----ATCAGTAACACC-TTA--GTGCACACATGTA----GCCAA-G-TTA--GCT-------------a
gi|11 : TTTCTAATCCGAGT-ACACTATT-GTCACAA----GTGATTATA-GCAAATTATTT-ACACATATAACCTCCAAAATATTTGTACATACGGGACT-GACACGACTAACATTGGCACTAA-AAGAACTCAAGATCAGTCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GC
gi|12 : TTGTAAT-TGCA-------AAACTATCATTGC-TAGATACTTTTGGTT-CTTTTAATA---AAAAA-----------------AA-A-A-CCT-------TTT-TCTACTCGTA-AG-GTCTGGATCGACAAGTTA-TTTTTATTCGGACAGGGTGAA-A--TTCCCAATTA-C-CTTG---------TAAGTGC--CCTCACTTGA-ATTTCCACAaattggaaaaacaggatgttaatttgacatta
gi|13 : AATTGGAAA-AACAGGATGTTAATTTGACATTATTCAGG-ACTTT--------------------------------------------------GGTT---TTT-TCTG----CA-AAAGT-TGG-----CAAGTTACTTTTTCT--GGACA-AGTGAA-A--TTTCC-ATTATTACTTGCCGGGGG-ACAAGTGCTGTTTCTCTAGATATTTCC-CACCCCTG
gi|14 : gcAAAA-----------------AG-AAATCATG--CGAATTTCTGT-----TA-AAAGTCTGG-----CGA---ATTTTTTTT--GGACA-AGTTAAGA--TTTCC-ATTA-CAT---CCTGGG--ACAAGTGC--TCTCAC
gi|16 : aaaaatttgcgagagcatACC-GATCTTTTATACATTGATT-T------CATTT-CCGTTA---A----------GTAATAAA-TC-C--AGCCCAAATCTATGA----A----AATA-----AACACAA--
gi|17 : GG--------------ATAATATTTCTAATCATTTATAAAAGGG------------TCAAAGCAATTGAAAAAtataa
gi|2 : GCATGGGTGTGGAATTAGTATGTCCGACTCGCTCAACTTGTACATTTGTTGAACCGGACAAGT----GCCTTT--TTGGTGCTA------GTT------GTCCGTTGACAAGTGAAAAGAA--TGACCATATCCAAATTTTGGGAGTGCGAAAATTTGATACGAGG-CAATCTAAATT--AAAG--------ATAAAAA-GATACTAAAA--A-G------G-TAA----A------TACTACTTAATTG------TT----ACT--TGATA-AATTTAT-TGACA-G-CCAAGACTACA-TATGTTTTATACACGAACTCC------GATAT-TGAGTA---A----------GTTATAAA-TT-CAGAGCCTGAAT-TATGAGGATA----A--AC----AATGTAA--AAATAGGAGTA--TT----TTTTTTTTTAATTCGA-T-ACGTTATT-TTCACAT----ATGAT-ATA-G-AAATTATTTTATGCATATAA-CCCGAAAATAGTTGTGCACACGG-ACT-GAC-------------------A-GAGAA------AT------CACT-TCT--GCACACACAGGTCTGAAGCCAA-A-Taaca
gi|3 : caatgctatttactcagtttcaaatattcagttcgcataggttcccagatgggtatcatcggtgttacgaggcatcgcactcaattatttcaaagtatttttccccacgatttgacgttcaattacatcacaatacaagtacatggttttcaagctgtgatataaatccaccgtgtttttgctatttaatctatgtagaactgtcccttcaccttttctttttcattcatgattgccgatttaaatcttaatttgtcatgcaagggttcagacaaccggactcagaagaggaaatcttgtaacttagacctgttatgataaaattctacttgatcgagtttcttgttatgcaagaaatactggcctacatcagtaGCAGGGGTGTGGAAATAGTATTCCTGACT---------TGTACAGTTGTTGAACAGGAGAATT---AATTTTT--TTAGTGTTA------TTT------GTCTGTGGACAAGTGAAAA-AA--TGACCATGCCAGTATCTTTAGAATACGAAAATTTGATGTGAGG-CAATCTAAATT--CAAAATGCATCAATAAAAA-GATATTTAAA--A-G------GGTAA----A------TACAAC----TTG------CT----ACT--TGGTA-AG---------CA-G-CTAACACTACC-AATGATTTA----CGT--T-T------AATTG-CCGGTA---A----------ATGATAAA-TCAC-GAGCTCGAATGTATGA----A----A--A-----AAGGCAA--AATT-GGAGTACCTGATT-TTTTTTTTTTTTTTTA-T-ATGTTATT-GTTGCAC----A--AT-AT--GCAAATTATTATACACACATAGCCCCCAAAATATTTGTGCACATGG-ACT-GACATG---------GACACCAG-AAAAACTCGCAATTGGTCACATC-TCA--GTGCACAT--GCC----GCCGA-G-TTA--GCT-------------GTCGGTCTGAAGC----CAGATATAATTGAGATAAAGG--------------GTTATATTTCTAATCATTTATAACGGGGTCAAAGAAAAACTCAAAGCATTTAAAAAA--GGCTCTAAAATTGAAAT-AACA-------AAATTGACATTTT-TAGG-ACTTT-GATTACTT---ATA---AAAAAAAAAGAGAGAGAGAGAGAG-AGA-CAAGGTCAAATTT-TCT-----TA-AAAGTCTGGA----CAAGTTACTTTTCTTTCGGACA-AGTGAA-A--TTTTC-A-------CTGCAAGAAGTGCAAGTGC--TCTCCCTAGAAATTTCCACACCCCTGata
gi|4 : GGGTGT--AAATA-TATGCCCGACT---------TGTATATT-GATAAACCGG-CACAT---AACATTTGTTTGGGTTTA------GTTAATATTGTCTGTG--CAAGTGAAAA-AAAATTACCAAGCCCCTATTTTGG-AGTGCGAAATTCCGTTGTGAAG-CAATCTAAGTTTAAAAAATT-G--AATGAAAA-GATACC--------------------------------GCCAC----TTG------CT----ACTGTC-ATACAACTTAT--GACAAG-CTAAC--TA----ATTTTTTACATA-GTATT-T------GATTTCCCGGTACTTAATACTTGATTATAATAAA-TC-C-AGATCCG-ATCTTTGA----G----A--ATAAACGATGCAATCAAATA--AATACTGAAGTTTTCTTTTTTAATC--A-TAACGTTATTGGTCGCATAACAATTAT-ACA---AAATTATTTTA-GC---TAAATCCCAAAATATTAGCACA-AAAG-ACTAGATG-G---------GACACCGATCAGAACTCACGATCATCCACACCTTCAGCGCGCACACAGGTT-----CCAA-GATTATGGCT-------------GTTGATCTGAAGC----CAAAATTATTTGAGAGAAAGAATCATACCCAGGATATAATATGTCTAATCATTTACAAC-AGGTCAAATAAAAATTTAAAACA----AGAGAC-GGCTAGATAAATGAAATAAACA-------AAATTGACACTA---AGG-ACTTT---TTACTT----TG----ATAA-----------------AG-AGA-CCTGGT--AATTT-TTT-----TGTAAATTCTGGAAG--CAA--TATTTTT
gi|5 : agAA--AAAAAGGAGTGCCTA----TTATTTTTTAATCAGA-T-ACGCTATT-TTTGCAT----AT-AT-ATG-------------------ATA-CTCCCAAAATATTTGTGCACATGA-ACT-GACACG---------GACGCTAA-ATGAACTCGCAACCAGTCACACT-TCA--ACGCACACAGGTC----GCCAATGTTTA--GTTGACAGTCAGATGAGTCTGTCAGAAGC----CAGA-ATTATTGAGGTGAAGG-----------------ATATTTCTAATCAT
gi|5 : gggCGGGGTCAAATAAAACCTCAAAGCAA---A---------TATCAG---GCAGT-A--A-------AAATTAACATTAT-CAAT-ACTTT--GT-----------------AA-----------------AG-----TCTGG--ACATTT-T------------AGCC---A-----AATTTTTTTTTTTTTTGGACA-AGTGAA-AATTTTCC-ATTA-T--TTGCCTGGGG-ACAAGTGC--TCTCCCTAGATATTTCCACACCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggtcaaataaaacctcaaagcaaatatcaggcagtaaaaattaacattatcaatactttgtaaagtctggacattttagccaaattttttttttttttggacaagtgaaaattttccattatttgcctggggacaagtgctctccctagatatttccacaccc
gi|6 : gggaaaaaaaggagtgcctattattttttaatcagatacgctatttttgcatatatatgatactcccaaaatatttgtgcacatgaactgacacggacgctaaatgaactcgcaaccagtcacacttcaacgcacacaggtcgccaatgtttagttgacagtcagatgagtctgtcagaagccagaattattgaggtgaaggatatttctaatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCAA-CAGAACTCACGATCAATCACACC-TCA--GTGCACACAGGTC----GCCAA-G-TTA--GCC-------------ATCGGTCAGAAGC----CAGAAATAATTGACAT--------------------TAACATTTCTAATCATTTATAACAGGGTCAAATAAAATCTTAAAGCAATTGAAAAACAGGCTGTAAAATTGAAGT-AACA-------AAATTGACAATAT-CATG-ACGTT-CATTACTT---AT------AAA-----------------AG-AGA-CATAATAAAATTT-TCTG----TA-AAA-TCTAAA----CAAG-TAAATTTTTCCCGGACT-AGTGAA-A--TTTTC-ATTA----TTGTTTGGAG-ACAAGTGC--TTTCACTAGATATTTCCACACCC
gi|7 : AAAACTCACGATCAGTCACACC-TAA--GTGCACACAAGTT----G-CAA-A-TTA--GCT-------------GGGAGTCTGAAGTCATGCAGATATA---GAGATAAAGA--------------ATAATATTTCTAATCATTTATAAAAGGGTCAAACAAATACTCAAAGCAATTGAAAAAC-AGATATAAAATTGAAA---------------------ATTAC-TAGG-ACTTT-GGTTACTT---ATGTGTAATGA-----------------AGAAGA-CATGGCAAAATTT-TCT-----TC-AAA--TTGAAT---TAAATTA----TTTTCCGGACA-AGT-AA-A--TTTCC-ATTAGTACTTGCCTGGGG-ACAAGTGA--TCTCACTCGATATTTCCTCACCCC
gi|8 : AGTGAAAA-AAAATGACCATGTTCTT-CCTTGAGAGTGC-AAAATTCTATGTGAGGGCAATTTAA-TT--AAAGATGTGTCAAATAAAA-GATACCTAAA--CTGTTACATG-TAA----AGAATAATACAAC----TTGATGATACTGAGCACT--CAATA-AATTTATGCGACA-G-CTAACATTACCAGATGTTTTATACATGTACT-T------GATTT-CCTGTA---A----------ATAATAAATTC-C-AAGCCCGAATCTATGA----AGGATA--AAC---AATGCAA--AAATTGGA
gi|9 : ACGGGTGTGGAATTAGTATGCCTGACTC---------ATGCACTTGTGGAACTGGACGATTCTAAACTATT--TTAGATTTA------GTT------GTCCGTGGACAAGTGGAAA-AA--AAA--AGGC-----------GAGTGCAAAAATTCAATGCGAAG-CAATCTAAATT--AAAGTTGAGTCAATAAAAAGGATAGCTAAa
gi|9 : tggaaaattaatacagaaccaatg--AAAAAT---TCAATGCGAA-GCAATCTAAA--T----------TAA----A------G---------TTG------------AGT--CAATA-AA---AA-GGATA-G-CTAACATTACT-GATGTTTTATACATGTACT-T------GATTT-GCAGTA---A----------ATAATTAA-Tcattactgatgttttatacatgtacttgatttgcagtaaataattaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAGAGAGAGAGAGAGAGAGAGGACGTTGATGTGATCCTAAAATGGACTAAATTTTTATTTCAGGAAAAGTGAACGTTTTTCCTGCA
Unaligned ( gi|18 ): ATAAAAGGGTCAAAACAATTGAAAAAACATATG