lowQualScore : 22222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111 111111111111
lowQualScore : 1 222 22 11111111 111 1 888888888888888888 1111 1 1 11 3 44444444444444444 1 3 11 222 1111111 00000000000000000000000000000000000000000000000 66666666666666666666666666 111 33333333333333333 1 444 11111 1 1 1 4 1 2 33 55555555555555555 11 44 1 2 11 1 44 1 1 1 11 222 1 2222 1 2 4444444 11 1 333333 1 1 11 1 11 22 22 1 1 111111 999999999999999999999999999999999999999999999999999999999999 1 2222222 55555555555 222 1 22222222 3333333333333333 3333333333 11 33333333333 1 333333333333333333333333333 11 1 44444444 111 1 3333 111 33333333 11 22 111 1 55555555555555555555555555 1 333333333333 333 1 22222222 1 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 22 22 222 000000000000000000 222 222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2222222 11 1 1 2222 2222 2 1 55555555555555 222 2222 11 1 1 1111 2222 33333333333333333333333 11 111 2 1 4444444 666666666666666666 1 222222 111 1 2 111111111111 22 1
lowQualScore : 3 5 111 11 6 77777777 000 33 6 6 3 77 111111111111111111 0000 1 5 5 3 5 3 1 22 4 7 7 3 77777777777777777 5 5 6 33 000 5 77 77 8888888 66666666666666666666666666666666666666666666666 88 77777777777777777777777777 5 8 444 77777777777777777 8 6 8 666 88888 0 4 4 0 4 6 0 4 3 0 1 3 11 00000000000000000 0 22 66 3 6 88 3 7 8 00 3 9 3 3 6 6 88 333 3 9999 2 8 6 4444444 0 4 22 3 555555 3 7 3 6 88 6 88 1 77 22 4 2 4 55 0 5 777777 111111111111111111111111111111111111111111111111111111111111 5 3 1 4 8888888 6 55555555555 1 333 8 0 66 4 6 22222222 0 5 3 0 8 4 7777777777777777 0 8 3 1111111111 2 11 77777777777 66 4 2 4 999999999999999999999999999 0 8 44 0 11111111 6 999 1 66 9 6 3 7777 6 777 66666666 22 33 6 0 666 0 33333333333333333333333333 2 77 9 0 6 9 111111111111 222 1 0 0 99999999 6 8 0 44 8 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 333 44 6 5 33 4 6 2 2 6 77 2 1 333 333333333333333333 333 555 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 3 4 7 1111111 88 3 3 8888 8888 1 0 0 3 99999999999999 3 333 1 6 6 8888 0 7 2 0 00 66 0 3 0 8 0000 2 3 3 5555 0 0 22222222222222222222222 2 99 33 000 2 2 2 1 0 6 0000000 666666666666666666 9 3 7 333333 3 999 7 77 8 6 0 999 0 7 1 3 1 6 0 1 6 2 0 2 000000000000 6 6 6 11 6 5
lowQualScore : . . ... .. . ........ ... .. . . . .. .................. .... . . . . . . . .. . . . . ................. . . . .. ... . .. .. ....... ............................................... .. .......................... . . ... ................. . . . ... ..... . . . . . . . . . . . . .. ................. . .. .. . . .. . . . .. . . . . . . .. ... . .... . . . ....... . . .. . ...... . . . . .. . .. . .. .. . . . .. . . ...... ............................................................ . . . . ....... . ........... . ... . . .. . . ........ . . . . . . ................ . . . .......... . .. ........... .. . . . ........................... . . .. . ........ . ... . .. . . . .... . ... ........ .. .. . . ... . .......................... . .. . . . . ............ ... . . . ........ . . . .. . . .................................................................................... . ... .. . . .. . . . . . .. . . ... .................. ... ... ...................................................................................................................... . . . . ....... .. . . .... .... . . . . .............. . ... . . . .... . . . . .. .. . . . . .... . . . .... . . ....................... . .. .. ... . . . . . . ....... .................. . . . ...... . ... . .. . . . ... . . . . . . . . . . . . ............ . . . .. . .
lowQualScore : 3 0 777 00 7 77777777 555 22 7 6 9 99 777777777777777777 1111 4 7 7 7 7 2 0 22 2 3 8 3 77777777777777777 7 0 4 66 333 7 99 44 6666666 99999999999999999999999999999999999999999999999 88 22222222222222222222222222 0 0 000 00000000000000000 0 0 0 444 55555 0 2 2 0 0 0 0 0 3 7 0 7 77 77777777777777777 7 77 00 3 7 33 3 3 3 77 3 7 3 3 0 7 33 333 3 3333 0 7 7 7777777 7 7 77 3 000000 3 0 3 0 33 0 33 0 77 55 0 5 0 00 5 0 000000 000000000000000000000000000000000000000000000000000000000000 0 7 0 7 0000000 7 77777777777 0 333 8 0 22 5 5 00000000 6 0 8 8 0 4 6666666666666666 8 0 8 8888888888 0 22 00000000000 88 2 5 5 555555555555555555555555555 2 8 00 0 88888888 5 888 2 22 0 5 2 2222 5 222 88888888 00 88 5 8 000 0 00000000000000000000000000 5 22 2 5 5 8 222222222222 888 2 0 2 22222222 0 2 0 22 8 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 888 33 0 5 00 0 0 5 5 0 55 5 0 000 333333333333333333 333 000 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 3 7 3 7777777 33 3 3 3333 3333 0 3 7 3 77777777777777 7 333 0 7 7 3333 7 8 5 2 88 00 0 5 0 8 5555 0 5 0 8888 2 2 33333333333333333333333 5 00 55 000 5 2 2 2 0 0 2222222 333333333333333333 0 3 0 000000 7 333 3 00 3 0 7 000 7 3 0 3 0 7 7 0 0 5 0 5 555555555555 0 0 0 00 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTATA-T-----GTGTACAGGAGANTAGCTTGANA-CCACAAAACAAAACACC--GAGCGT-GCCAGG----GA-----CGCCA---TACGACAAGACA-GA-CCT-CATGGACN-TGGCGGTGGGNTCATTACATAC--GTATATCTAA-A---AC-TTAGCCTACCGCA-AATTACACA--TCAACCGC--GACTT-TAG--TCC-GGTTGAA-------GTGGTAGGT-------A----A----AC---ACA---------------GGTTCN-ATTAACATCCTAAAAACATTTACA-TAC-ACC-AC--CACCCC-AT---ACTAAN-CAATTATCTACAAT-C-TGC-ACT-TG-T-CA--A--CT-CACAGTTGTTCCCTA-CAAACACNATTTA-CCTNGGGGA-TTTCAACGTCCAC-CACCC-AACTATCGGAGGCGACGAA----ACGGANAAAGCGGGAAAAG-ATGTCGTCCAGT-GGGTAGAT--GA-TCAAAACTTAGTCATTCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAAT--ACT---GGTAAC-TCCAC-T-CGCGTTGGA-TGTAACCATCGTACCA-AN----CGCCNTATCCGNCATATCCGACTGG-ACTGTAGTAC-AAGAT-CCCT-GCGGATCGG--ATCATCT-CCAATCATC--ACCACCTTCTCCGTCGCACCNATACGNGGGAANCAANANNCCNCCAAAGTCTT-GGGTCTACA----------------T---CCAAA-T-GCCAACT------------------TACTCGGCACGATNCAGGCGGA-C-AAN-TAGCAGACGACAACATCGATN------AATATCTGGACAACA---TCAACCAAA-CAATCCACCANG----CNGCCTANCAATCCATA-CCNAGGA-----CATCCGGC-TAAAACAA-CCACTAGGC-------C-NATCAA-CCCT---T-CNT-GGACCGACAAATGCACCCAGGCC--AGGAAAGATAGCAGGAAAGCCTTCAAATAN-TT-CCAGCTGG-GN-CAAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C------ATAT-TGC--ACGAACAACAAACNCATT-GGC---------AAA--ACT----TCA-NTTCAANACTNAAACTCACGTACAAACATAN--CNAA--AGTCTGG--AAAAAGG-TCAAGNCTCCGT-TAGGCAAAAAC-AC-TAAAACCAC----CNTTC-CNACA-------ATCAN---------AAA---TGCATATA----GCTC-AC-AAGACAAGACA--CCT-----AGACATAATTGCCAAAA-CATTCCAACTAGCNAAGNTCAAANACAAACGTTGATCCAGCACACATACACTAGTCAGGGACCGNTTCAG--NCACA----A-A-CTCCAA-C--AAAGACA---CAGGT--CCCAACACNC--AGAGCACTCAAT------CAACCATTCAN--NTCGCA--CGA----ACT-----CG--AAC---------AAACAC-----------------TC-------------------GCACCTGG-AGGNGACAAAATTACA-CAT-TCA--TGC-TAAAAAACCTC----CCTCCTAA----CCTCAC-AACATTATA-CTCCACTTC-ACA------AC-CANCTA---TTCACAAAAAA----CCAATTTCCNACATCGTGGAGCAACGCTATNGTCATC-CCAATNCCTAAACCAAACAAGGATCGCCACGNNCCTGACTCCTACAGACCAATATCACTTACNTCGCACCTGCGTAAAACCTTCGAAAAAATGCTCAA-ACCAG-ATT--AA-GATGGTTTCTGGACAAGCAAGGCANACTGGACCCTGCNCAGAGCGGATTCCGCCCCGGACGCA-GCACAATAG--ACAA-TCTTGTCCAACTGGAAACA---------GAAG-T--TAAC-GGGCAT-GGC--AAANAGTNAATACACGGGAGCTGTCTTTAT--CGACATTTCCAAAGCTTTCGA-TCTTGTTTGGCATGGCGGACTTATNTACAAGCTCCGTCCACCAATTCNACATCACTGTTAA----TTATGTTTCATTAGGTCTTTCCTCACAGG
Reference ( gi|2 ) : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTATG-T-----GTGTACAGGAGAGTGGCTTGGCA-CCACAAATCAAAACACC--GAGCGT-GC--------AA-----CGCCA---TACCACAAGACA-GA-CGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCTAA-A---AC-TTAGCCTACCCCACAATTACACA--TCAATCGA--GACTT-TAG--TCT-GGTTGAA-------GT------------------------AC---ACA---------------GGTTCT-ATTAACATCCT--A--CATGTACA-TGC-ACC-A---CACCCC-AT---ACTAAT-C----ATCTATAA--C-TGC-ACT-TGTTTCA--A--CT-CACTGTTGTTTCCCA-CAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGAGACAAG----ACGGGGAAAGCAGGAAAAATATGTCGTCCAGT-GG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAAT--ACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACCA-AG----CGCCTTATCCGGTATATCTGACTGG-ACTGTCTTAG-AAGAT-CCAT-GCGGGTCAG--ATCATCTTCCAATCATC--ACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTCTT-GGATTTACA----------------T---TCAAATT-GCTAACT------------------TACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCAACA------AATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGG----CAGTCTACCAATCCATA-CCTAGAC-----CATTCAGC-TAAAACAA-CCACTAGGC-------C-TACCAA-CCCT---T-CAT-TGATTGACAAGTGCATCCAGGCC--AGGAAAGATAGCAGGAACGCCTTCAAAGAA-TT-CCAACTGG-CC-CAAATCTCCAAA--TAAGAATACGACAGAGCATGC---AAACACACTAAA-CATGT-C------ATAC-TGC--AGAAACAACAAACTCGTT-GGC---------AAA--ACT----TTA-CTTCAACACTAAAACTCACGCACAAACTTGC--CAAA--AGTCTGT--AAAAAGG-TCAAGTCTATGT-TAGGTAGAAAC-AC-CAACACCAC----CAAAC-CTACA-------ATCAA---------AAA---TGCATATA----GTTT-AC-AAGACAAGATACATGT-----AGACATAATTGCCAAAA-TATTTCAACTAGCT-AGTTCAGACACAAATCTTGATCTAG--CACATACACTAGTCAGGGACCGCTTTAG--ACACA----A-A-CTC-------AAAGACA---CAGGT--GCCAACACA---GGAGCATTCAAC------CAACCATTTAC--CTTACA--CGA----ACT-----CG--AAC---------AAACAC-----------------T--------------------GCACCAGG-AGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCATA-CTCCACTTTTACA------AT-CAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCATT-CCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTACACCTG-ATT--AA-GATAATTTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAG--AT-A-TCTTGTCCAACTGGAAACCTGTTGTCCTGAAG-TCCTGAC-AGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGA-TTTGGTCTGGCATGATGGACCTATCTACAAGCTCCG-TCATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|6 : CCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTATA-TCATATGTGTACAGGAGATTAGCTTGACA-CCACAAAACAAAACACC--GAGCGT-------------------GCCA---TATGACAAGACA-AA-CCT-CATGGATA-TGGCGGTGGGTTCATTACATACATATATA---AC-A---AC-TTAGCCTACCGCA-AATTACACA--TCAATCGT--GACTT-TGG--TCT-GTTTGAA-------GTTGTACTCAAAATTCAACTCA----AC---ACA---------------GGTTCT-ATTAACATCCTAAA--CATTTACA-T---ACC-AC--CACCCC-AT---ACTAGT-CAATTATCTACAAT-C-TGC-ACT-TG-TACA--ACTCT-CACAGTTGTTCCCGA-CA
gi|8 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTATA-T-----GTTTACAGGAGAGTGGCTTGAAA-CCACAAA-CAAAACACT--AAGCGT-GCCAGGGTATGA-----CGCCA---TACGACAAGACA-GA-CCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCTAACA---AC-TTAGCCTACCGCA-AATTACACA--TCAACCGC--GACTT-TAG--TCC-GGTTGAAGTGGTAGGT------------------------AC---ACA---------------AATTCA-ACTAA
gi|10 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTATA-T-----GTGTACAGGAGAA--G--TGGCA-C------TGAGCGTGCC--AAG-GT-AC--------GA-----CAACA---TACGGCAAGACA-GT-CCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCTAACA---AC-TTAGCCTACCATA-AATTACACA--TCGATTGT--GACTT-TAG--TCC-GGTTGAA-------GTATTCAATTCA--------------AC---ACA---------------GGTTTA-ATTAACATCCTAAA--CATTTAAATTCC-AC------CACTCC-AT---ACTAAA-C----ATCTCCAA--C-CTCAACT-TG-TCCAATA--CT-CACAGTTGTTCCCTA-Caca
gi|5 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggCCAATTCAAGCAACTAGTAC-AGACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAGTGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGGGTATGA-----CGCCA---TACGACAAGACAAGA-CCTTCATGTACC-TGGC-GTGGGGTCATTACATAC----ATATCTAA-ACAAAC-TTAGCCTACCGCAAATTTACACAG-TCAACCGC--GACCTGTAG--TCC--GTTGAA-------GT------------------------
gi|1 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTATA-T-----GCGTACAGGAGACGAGCTTGAAG-CCACAGCACAAATCACC--GAGTGT-AC--------CAGGGTTTGTCAAATTACGACAAGACA-GA-CCT-CAggtaggtacacaaaaattcaactaaacacggggt
gi|7 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTATA-T-----GTGTACAGGAGATTAGCTTGACA-CCACAAAACAAAACACC--GAGCGT-GC--------ccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|3 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtCACAAAACAAA-CACC--AAGCGTCGCCAGGTAT-GA-----CGCAA----ACGACAAGACA-GA-CCT-CA-GGACCCTGGCGG-GGGTCA-TTA-ATACCAGTAT--CTAA-ACA-ACATTAGCCTACCGCA-AATTACACA--TCAACCGC--GACTT-TAG--TCCCGGTTGAA-------GTGGTTAGGTACACCAAATTCA----ACTAAACAAC-------------GGTTCTTATTAACATCTT--AAACAT-TACA-TACCACC-A---CAAC---AT---ACTAAAAC----CTTTACAG--CCTGCCACTATG---CA--A--CTTCACAATTGTTTCCTA-CCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGCAACGAA----ACAGATAAAGCAGGTAAAG-ATGTTGTCCAGT-GGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAAT--ACTTTTGGTAACATCCACAT-CGT--TGGGATGTAACCATTGTAC-A-AC----CACATTATCCGTCATATCTGACTGGTAGTAATATAC-AGGATTCCCT-GCGGATCAG--ATCATCT-CCAATCATC--ACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACACCAAAAGCCAACTTGGT---CTAAATTTGCTAATC------------------TACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCGAAT------AATACTTGGATAACA---TCAACCAAG-CAATCAACGAAG----CAGCCTACCAGTCCATAACCTAGAA-----CAT-CAGAGTAAAACAA-CCAC-AGAC-------CACATCAAACCCG---TGCAT-GGACTGACAAATGCACCCAG--C--AGAAAAGATAGAAGGAAAGCCTTCAAGCAA-TTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT-AAACACACCAAG--ATGT-C------ATAT-TAC--AGGAACAACAAACCCATTTGGC---------AAA--ACT----TCA-TTTCAAAGCTTAAATTCACA-ACAA-CATAT--CAAA--AGTCTGGG-AAAAAGG-TCAAGTCTCTGC-TAGGCAAACAC-AC-AAACACCAC----CATATACTACA-------ATCAA---------GA----TGCATATA----GTTTCAC-AAGACAAG-------C-----AGATACAATTGCCAAAAACATTCCAACTAGCT-AGTTCAAACACAAACCTTGATCCAG--CACATACACTAGTCAGGGACCGCTTTTA--GCACA----A-AACTCCAAGTCAAAGGACA---CAGGT--CCCAACATAC--AGAGCACTCAAT------CAAACATTTTA--ATTGCA--TGA----ACT-----CA--AAC---------AAACAC-----------------TCATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCACTTT-ACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACG-CATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTCAACACTAGAATT--AA-GAT-GTTTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGT-CCTGACGCATGCACCATAG--ACAA-TCTCGTCCAACTGGAAACAT---------AAGTTCCTCGCAAGGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACTGTTAAcagggtatcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|7 : A---CACCACAAAACA-AAACAC-C--GAGCG-TGCCAG-GGTATCATTACATACATATATA---AC-A---AC-TTAGCCTACCGCA-AATTACACA--TCAATCGT--GACTT-TAG--TCT-GTTTGAA-------GTGGTAGGTACTCAAAATTCAACTCGAC---ACA---------------GGTTCT-ATTAACATCCTAAA--CATTTACA-T---ACC-AC--CACCCC-AT---ACTAGT-CAATTATCTACAAC-C-TGC-ACT-TGT
gi|1 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgC-TTAGCATATCACA-AACTACAGAGATCTACCCATCGACCA-TAGGATCC-AGTTGAA-------GTGTTAGGT-----------------AC---ACAAATAAACTCAATAAAGGTTTC-ATTAACATCTT--AAACAT-TAT--TAC-ACCTATTCCACCACGATGGAACTAAC-C----ACCT-CAGTCC-TGT-ACT-TGCA-CA--A--CT-AGCCAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCACACACA--AATTCT---AGAAG-CAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGG-TAAGTTGGA-TCAA--CTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGATCC-AATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACCATAT----AACCATATCGGCCATGTCCAATTGG-ACAGTAGTAACAAGAT-CCATTGTGGATCAGTAATCATCTACCAATCATCTCAACATTTTCTT--TTGCACCA-TATGTGGGAAGTAATACACTACCAAAGTCGT-G----TACA----------------TATGCCAAA---GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGA-C-AAAATTGCAGATGACAACATTGATC------AGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTG----CTGCTGAACAATCCATA-CCAAGGA-----CATCTGG--TAAAATAA-CCACTAGGC-------C-AATCAA-TCCT---T-CTT-GGACGGACAAATGCACTCAAGCA--AGGAAAGCTAGCAGGAAAACCTTTACATAT-TT-TCAGCTGG-GG-CTTATCT-CAAAGCCAAGCCAACAA-AGAGCATGTTAAAAACA-ACTAAATCATGTACTGATCAATACATGCCAACAACCAACACACCC-TT-AGCCACACCGGGAAAATATT----TCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCTTAGAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACC-CTCTATCCATCCATCAATTGACCCCCAAACACTGCATATA----GCTC-ACAAAGACAGCATACCCTTACCCGAGGCATAAATGCTAAa
gi|11 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcacA-TTTCAACATCCAC-CACCC-AACTATTGGAGGCAACAAA----ACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGT-GGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAAT--ACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCA-AATAAACGCCCTATCCGGCATACCTGACTGG-ACTGTAGTAC-AAGAT-CCCT-GCAGATCGG--ATCATCTTCCAAGCATC--ACCACCTTCTCCGTCACACctctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|9 : tAGTCTT-GGGTCAACA----------------T---TC----T-GCCAGCT------------------GGTT---CACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTACCA-TCC-----CCAGGT-----CACCTAAC-CAAA-CAG-CCACTAGGC-------C-a
gi|4 : TAACCAAA-CAACCCACCATG----CTGCGGAACAATCCATA-CCAAGGA-----CATCTGG--TAAGATAA-CCACTAAGC-------C-AATCAG-TTCT---G-TTT-GGACTGACAACTGCACTCAA--C--AAG-----T--CA---------TCAAATAT-TT-CCAGCTGG-GA-CA--TGTCCAAA--CATGAATATAACGGAGC-TGT---AAACACACTGAC-TATGT-T------ATAT-CGC--ATGAACAGCAAACACAGT-GGA---------AAA--ATTAATTTCA-ATTCAACACTTAA-CTCACGTATAATCATAA--CAAA--TGTATGG--AGAAAGG-TTAAGGCACTTT-TAGGCATAATC-AC-TAAAACCAC----TTTTT-CAACA-------AT-AT---------AAA---CGCATATATATAGCTC-AC-AAGAAAAGACAAATCT--------CAT---TGCCAAAA-CATTCCAAC-AACGAAGATCAAAGACAAATGTTAATTCAGCACACATACATTAGTCAGAAATCGATTCAGAAACACACTTCA-A-GTC-------AAAGACA---CAGGT--CCCAACACT---AGAGCACT---C------TTACCATTCAT--TTTGCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT--------------------GCACCTGG-AGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTATA-CTCCACTT----A------AC-CATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCATC-CTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTG----------------AGATGGTT----CCTG-AAT--AA-G------------CAA----GGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCA--A-CCCTGTCCAACTctaggacgataaaaaacgtaaagaaattcaaactgagtaaactcttcaaacaagaatgaaataaaacaagtaaacatactgaacacgttatcttgtgaaaaacaacagacacattggcaaaacgtctcaacacaacactcgtgtacaaacatgggcacagtctggataaaagtcaatgctcattggtcaaaaacattaagtcaaccactccaacaaatacaaatacatacagaggacataattaccaaaat
gi|9 : CTAGTAATCAATA-TCTAAACAACAACATCAAGC--AAAACAATCCAGCAGGATGATAAAC-TACCAT-CCCCAGGT-CACCTAACCAAACAGC-CA-CTAGGCCCTAGGAC-GATA--AAAAACGT----AAAGAAATT-CAAACTGA-GT-AAACTCTTCAAA--CAAGAATGAAATAAAACAAGT---AAACATACTGAA-CACGT-T------ATCT-TGTG-AAAAACAACAGACACATT-GGC---------AAA--ACG----T----CTCAACAC-AACACTCGTGTACAAACATGG--GCAC--AGTCTGG--ATAAAAG-TCAATGCT-CAT-TGGTCAAAAAC-AT-TAAGTCAAC----CACTC-CAACA-------AATAC---------AAA---TACATACA----G--------AG-------------------GACATAATTACCAAAA-T
gi|1 : agtcttgggtcaacattctgccagctggttcacgatttaggcagaccgaactacacacgagaacattaTTCAG--TCACA----ATA-CTTCAATCA-AAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACAC-----------------TC-------------------GCACCTGA-GGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTATA-CTCCACTTCTACATGTACAAC-CAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCATC-CCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC
gi|13 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgTACATCGTGGAGCAACGCTACAGTCATT-CCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAAATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAG--ACAA-TCTTATCCAACTGGAAA
gi|12 : G-GTT--GA-GATGGTTTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAG--AC-AATCTTGTCCAGTTAGAAACA---------AAAG-TGATAAC-AGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGA-TCTTGTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGG
gi|16 : GTCCAACTAGACACC-ATAGT---GA------TAAC-GGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGA-TCTTGTTTGGCATGGTGGACTTAT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 333333333 2222 22222 00000000000000000000000000000000 33 333333 111 3333333 11 333 11111 11 11 1 11 11 11 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 22 111 2222222222222222222222222222222222222222222222222222 111 3333 11 222222 111 1 11 1111 1 3333333 11111 11 1 222 1111 1111 111 333333333 11 1111 111 11 11 11 1111111 11 22222222 333333333 22222222 11111111 77777777777777 222 1 44444 1 111 11 2222 222222 111 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 222 11 1 2222 2222 1 2 1 55555555 1 111 2222 2222 1 111 777777777777777777777777 1 11 11 1 11 11111 4444
lowQualScore : 0 5 5 44444 6 777 0 3 66 5 000000000 5 66 888 5 5 6 1 77 666 2 0 2 7777 66666 5 5 5 5 5 5 5 66 5 1 66666666666666666666666666666666 888 66 66 88 3 99 111111 1 111 0000000 3 33 6 6 000 33333 99 0 4 1 44 1 0 0 22 22 2 2 22 0 1 2 0 2 33 0 3 4 3 0 0 0 0 2 33 777 0 7777 88 0 2 4444444 1 1 1 2 0 66 0 4444 0 00 2 33 111 44 2 11 11 0 1 1 22 11 000 4 2222222222222222222222222222222222222222222222222222 111 4 1 66 3333 11 2 2 888888 22 777 8 1 1 1 77 1 0 8 1 1 4 5 0 0 11 8 6666 4 0 1 0000000 3 5 3 3 8 3 8 1 1 33333 3 11 3 3 0 555 3 6 8 5555 8 8 8888 1 444 8 222222222 11 7777 222 1 11 5 6 3 6 11 1 1 11 11 8 1 9999999 8 00 3 99999999 444444444 1 99999999 8 8 77777777 8 0 66666666666666 0 8 3 999 1 77 8 0 0 55 2 6 00 1 1 8 0 2 11111 0 777 33 9999 3 888888 3 3 22 555 33 1111 555555555555555555555 000000000000000000000000000000000000 33 1 3 2 0 888 33 0 3 1111 1111 0 0 0 33333333 0 1 777 3 3 1111 1 3 1 8 1 4 6 6 22 1 5 44 3 3333 0 2 3 444 22 1 8 0 777777777777777777777777 66 2 0 33 1 1 3 4 33 3 0 2 1 99 0 1 00000 2222 2 2
lowQualScore : . . . ..... . ... . . .. . ......... . .. ... . . . . .. ... . . . .... ..... . . . . . . . .. . . ................................ ... .. .. .. . .. ...... . ... ....... . .. . . ... ..... .. . . . .. . . . .. .. . . .. . . . . . .. . . . . . . . . . .. ... . .... .. . . ....... . . . . . .. . .... . .. . .. ... .. . .. .. . . . .. .. ... . .................................................... ... . . .. .... .. . . ...... .. ... . . . . .. . . . . . . . . . .. . .... . . . ....... . . . . . . . . . ..... . .. . . . ... . . . .... . . .... . ... . ......... .. .... ... . .. . . . . .. . . .. .. . . ....... . .. . ........ ......... . ........ . . ........ . . .............. . . . ... . .. . . . .. . . .. . . . . . ..... . ... .. .... . ...... . . .. ... .. .... ..................... .................................... .. . . . . ... .. . . .... .... . . . ........ . . ... . . .... . . . . . . . . .. . . .. . .... . . . ... .. . . . ........................ .. . . .. . . . . .. . . . . .. . . ..... .... . .
lowQualScore : 6 7 7 33333 6 666 1 4 99 0 111111111 0 99 888 0 0 2 4 88 888 8 1 5 9999 66666 0 0 0 0 0 4 0 99 0 4 99999999999999999999999999999999 888 99 00 88 2 22 222222 0 777 3333333 2 33 7 7 888 00000 00 8 0 0 00 0 7 0 55 55 0 5 00 8 0 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 55 0 0 8888888 0 0 0 0 0 00 2 8888 0 22 0 88 000 55 0 33 77 7 0 0 00 77 222 2 5555555555555555555555555555555555555555555555555555 000 2 0 22 8888 00 5 0 888888 22 555 0 4 0 0 22 0 8 0 0 0 6 0 8 8 88 0 0000 6 8 4 2222222 6 0 2 2 6 8 0 4 0 88888 2 00 2 2 8 000 2 4 0 4444 0 0 8888 0 000 0 000000000 00 0000 666 0 88 6 8 2 0 00 0 0 00 00 0 0 2222222 0 22 6 00000000 222222222 0 22222222 8 0 22222222 0 8 88888888888888 8 0 2 222 0 88 8 2 2 55 5 5 55 0 0 0 0 5 55555 0 555 88 8888 2 888888 2 2 00 888 88 2222 222222222222222222222 222222222222222222222222222222222222 55 0 2 5 0 555 88 0 5 2222 2222 0 0 0 00000000 0 0 555 0 0 2222 0 8 0 0 0 4 4 4 00 0 0 55 2 3333 0 2 2 000 44 0 0 8 888888888888888888888888 88 5 0 88 0 0 2 0 88 2 0 0 0 33 7 0 00000 5555 5 5
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGANTGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG----G----ACG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCTAACA---AC-TTAGCCTACCGCA-AAT-T-ACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-----------AGGTAC-C-AA---------AAC---ACA--GGTTCN-ATTAACATCCT--AAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAAC-CTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGAAC--AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCCTT-CNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATANTT-CCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AAA--ACT----TCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACCAT-------TCCAACAAT-------CANA-AATGCATATA----GCT-CAC-AAGACAAGATAC-C-T-----AGACATAATTGCCAAAA-CATTCCAACTAGCTAAGNTCAGACACAAACCTTGATCCAGCACACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTCCAAGTC--AAA-GACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CA-C-TCA--TGC-TAAAANACCTC----CCTCCTAA----CCTC-ACGAACATCAT-ACTCCACTTTT------ACAA-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGTGAT------AACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACTG-TAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGANTAGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG----G----ACG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCTAA-A---AC-TTAGCCTACCGCA-AAT-T-ACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-----------AGGTA---------------AAC---ACA--GGTTCN-ATTAACATCCTAAAAACAT--TTACA--TACACCACCACCCCAT---ACTAANCAATTATCTACAAT-CTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCTACAAACACNATTTA-CCTNGGGGA-TTTCAACGTCCAC-CACCC-AACTATCGGAGGC-GACGAAACGGANAAAGCGGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATTCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGCGTTGGA-TGTAACCATCGTACC----A-ANCGCCNTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCGG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCNATACGNGGGAANCAANANNCCNCCAAAGTCTT-GGGTCTACA----------------T---CCAAAT--GCCAAC------------------TTACTCGGCACGATNCAGGCGGA-C--AAN-TAGCAGACGACAACATCG------ATNAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCNGCCTANCAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCN-ATCAA-CCCTT-CNTGGACCGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATANTT-CCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ACG--AACAACAAACNCA---TT-GGC---------AAA--ACT----TCA-NTTCAANACTNAAACTCACGTACAAACAT--ANCNAA--AG--TCTGG-AAAAAGGTCAAGNCTC-CGT-TAGGCAAAAAC-AC-TAAAA--------CCACCNT-------TCCNACAAT-------CANA-AATGCATATA----GCT-CAC-AAGACAAGACACCT-------AGACATAATTGCCAAAA-CATTCCAACTAGCNAAGNTCAAANACAAACGTTGATCCAGCACACATACACTAGTCAGGGACCGNTTCAGNCAC-AA-ACTCCAA--C--AAA-GACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCANNTC--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-TGGAGGNGACAAAATTACA-CA-T-TCA--TGC-TAAAAAACCTC----CCTCCTAA----CCTC-AC-AACATTAT-ACTCCACTTC-------ACAA-CCANCTA---TTCACAAAAAA----CCAATTTCCNACATCGTGGAGCAACGCTATNGTCA-TCCCAATNCCTAAACCAAACAAGGATCGCCACGNNCCTGACTCCTACAGACCAATATCACTTACNTCGCACCTGCGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTAAGATGGT---TTCTGGACAAGCAAGGCANACTGGACCCTGCNCAGAGCGGATTCCGCCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACA---------GAAGT--T------AACGGGCAT-GGC--AAANAGTNAATACACGGGAGCTGTCTTTAT--CGACATTTCCAAAGCTTTCGATCTT-GTTTGGCATGGCGGACTTATNTACAAGCTCCGTCCACCAATTCNACATCACTGTTAAT----TATGTTTCATTAGGTCTTTCCTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGACGAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG----GT---TTG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATCACA-A---A-------CTACAG-A-GATCT-ACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-----------AGGTACACAAATAAACTC--AAT---AAA--GGTTTC-ATTAACATCTT--AAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCACC-ATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACA----------------TATGCCAAA---GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGA-CA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCATA-CCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATCAA-TCCTT-CTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACATATTT-TCAGCTGGGGC--TTATCT-CAAAGCCAAGCCAACAA-AGAGCATGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTT-AGCCACACCGGGAAAATATT----TCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCTTA-GAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGCATATA----GCT-CACAAAGACAGCATACCCTTACCCGAGGCATAAATGCT--AA-CTCTTTAGCTTGC----ATCGG----AAACCTTCCTGCAACCCACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA--TCAAAA-GACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCA-T-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTT-AC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGA--AG--TG-G---------------CACT--GAGCGT-GCCAAG----GT---ACGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCTAACA---AC-TTAGCCTACCATA-AAT-T-ACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATTC----------AATTC---------------AAC---ACA--GGTTTA-ATTAACATCCT--AAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAAC-CTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGTGAT------AACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATC-------AT----TATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGTGAT------AACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAGTGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC--------A----ACG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCTAA-A---AC-TTAGCCTACCCCACAAT-T-ACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT-----------------------------------AC---ACA--GGTTCT-ATTAACATCCTA----CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA--CTGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTCTT-GGATTTACA----------------T---TCAAATT-GCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC--AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCATA-CCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACCAA-CCCTT-CATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAGAATT-CCAACTGGCCC--AAATCTCCAAA--TAAGAATACGACAGAGCATGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TT-GGC---------AAA--ACT----TTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCTGT-AAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACCAA-------ACCTACAAT-------CAAA-AATGCATATA----GTT-TAC-AAGACAAGATACATGT-----AGACATAATTGCCAAAA-TATTTCAACTAGCTA-GTTCAGACACAAATCTTGATCTAGCACA--TACACTAGTCAGGGACCGCTTTAGACAC-AA-ACTC--------AAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CA-CCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTC-ACGAACATCAT-ACTCCACTTTT------ACAA-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGATA-TCTTGTCCAACTGGAAACCTGTTGTCCTGAAGTCCT------GACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTAT-G----ACG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCTAA-ACA-ACATTAGCCTACCGCA-AAT-T-ACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTT----------AGGTACACCAAATTC-----AACTAAACAACGGTTCTTATTAACATCTTAAA--CAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAGC-CTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACACCAAAAGCCAACTTGGT---CTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC--AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT-AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCA---TTTGGC---------AAA--ACT----TCA-TTTCAAAGCTTAAATTCACA-ACAA-CAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACCATA------TACTACAAT-------CA-A-GATGCATATA----GTTTCAC-AAGACAAG-----C-------AGATACAATTGCCAAAAACATTCCAACTAGCT-AGTTCAAACACAAACCTTGATCCAG--CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTC--AAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACC-TCA--TGCGTAAAACACCTC----CCTCCTAA----CTTC-ACAAACATCATAACTCCACTTT-------ACAATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGT--TCCTCGCAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACTGTTAA
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCATA-CCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATCAG-TTCTG-TTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAATATTT-CCAGCTGGGAC--A--TGTCCAAA--CATGAATATAACGGAGC-TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GT-GGA---------AAA--ATTAATTTCA-ATTCAACACTTAA-CTCACGTATAATCAT--AACAAA--TG--TATGG-AGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACTTT-------TTCAACAAT--------ATA-AACGCATATATATAGCT-CAC-AAGAAAAGACA-----------AATCTCATTGCCAAAA-CATTCCAAC-AACGAAGATCAAAGACAAATGTTAATTCAGCACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTC--AAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CA-TATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAAC-AACATTAT-ACTCCACTT----------AA-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTG
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAGTGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG----GTATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAA-ACAAAC-TTAGCCTACCGCA-AAT-TTACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-----------AGGTA---------------CAC---AAA--AATTCA-ACTAA
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGATTAGCTTG-ACACCACAAAACAAAACACC--GAGCGT------------------G-C--CA---TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATA--TAACA---AC-TTAGCCTACCGCA-AAT-T-ACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGTACTCAAAATTCAACTC---------------AAC---ACA--GGTTCT-ATTAACATCCT--AAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAAT-CTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGATTAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG----G----
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt----G----ACA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT--AACA---AC-TTAGCCTACCGCA-AAT-T-ACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-----------AGGTACTCAAAATTCAACTCGAC---ACA--GGTTCT-ATTAACATCCT--AAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAAC-CTGC-ACT-TGT--tatcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAGTGGCTTG-AAACCAC-AAACAAAACACT--AAGCGT-GCCAGGGTATG----ACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCTAACA---AC-TTAGCCTACCGCA-AAT-T-ACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-----------AGGT-----------------AC---ACA--AATTCA-ACTAAa
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTCTT-GGGTCAACA----------------T---TC---T--GCCAGC------------------TGGTTC---ACGATTTAGGCAGA-CCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCATC-CCCAGGTCACCTAACCAAA-CAGCCACTAGG----------CCCTA----GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAGTA--AACTCTTCAAA--CAAGAATGAAATAAAACAAGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TT-GGC---------AAA--ACG----TC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCTGG-ATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACCAC-------TCCAACAAA-------TACA-AATACATACA----G--------AG-------------------GACATAATTACCAAAA-aca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 33333333 2222 1 00000000000000000000000000000000000 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 11 11111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 111 3333333 11 111 11 1 111 111 1111 11 222 333333333 11 1111 111 11 11 11 1111111 22222222 333333333 22222222 2222222 7777777777777777 2 22 1 2 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 222 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 1 00000000 7777 888 5 5 6 1 77 666 2 0 2 7777 55 0 666 5 5 5 5 5 5 66 5 1 55555555555555555555555555555555555 888 66 66 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 33 0 77777777777777777777777777777777777777777777777777777 111 4 0 1 3 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 99 8 8 222 5 0 1 0000000 3 5 3 3 66 3 1 222 66 3 11 3 3 111 444 3 6 8 5555 8 8 1 11 1 222 222222222 11 7777 222 22 5 6 44 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 1111111 8 0 4444444444444444 8 0 0 3 3 2 1 55 0 0 44 6 00 1 8 0 77 8 0 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 888 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . . ........ .... ... . . . . .. ... . . . .... .. . ... . . . . . . .. . . ................................... ... .. .. .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . .. . ..................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. . . ... . . . ....... . . . . .. . . ... .. . .. . . ... ... . . . .... . . . .. . ... ......... .. .... ... .. . . .. .. . . .. .. . ....... . .. . ........ ......... . ........ . . ....... . . ................ . . . . . . . .. . . .. . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . ... .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 4 11111111 0000 888 0 0 2 4 88 888 8 1 5 9999 66 0 222 0 0 0 0 4 0 99 0 4 44444444444444444444444444444444444 888 99 00 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 22 8 55555555555555555555555555555555555555555555555555555 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 0 0 888 6 8 4 2222222 6 0 2 2 66 8 4 000 66 2 00 2 2 888 000 2 4 0 4444 0 0 0 00 0 000 000000000 00 0000 000 22 6 4 00 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 4444444 0 8 0000000000000000 0 8 2 2 2 0 0 88 2 2 00 5 55 0 0 0 55 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 000 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG---GT---ACG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCTAA-CAA-C-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAA-T------A----------AC---ACA--GGTTCN-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AAA--ACT----TCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGCATATA----G-CTCAC-AAGACAAGATAC---C-------AGACATAATTGCC-AAAACATTCCAACTAGCT-AGNTCAGACACAAACCTTGATCCAGC-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACC-TCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTT--CATCGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG---G----ACG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCTAA-CAA-C-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAA--------A----------AC---ACA--GGTTCN-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGAAC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TTCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ANTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AAA--ACT----TCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGCATATA----G-CTCAC-AAGACAAGATAC--CT-------AGACATAATTGCC-AAAACATTCCAACTAGCTAAGNTCAGACACAAACCTTGATCCAGCACACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTCCAAGTCAAA-GACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CA-C-TCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTT--CATCGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG---GT---TTG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC--A-CAA-----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTA----CA-CAAATAAACTCA----------AT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACATATGCCAAA--------------------GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCAT-ACCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATC-AATCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACAT-ATTTTCAGCTGGG--GCTTATCT-CAAAGCCAAGCCAACAA-AGAGCA--TGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTTAGCCACACCGGGAAAATATT----TCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCT-TAGAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGCATATA----G-CTCACAAAGACAGCATAC--CCTTACCCGAGGCATAAATGCT-A----ACTCT--TTAGCTTGCATCGG----AAACCTTCCTGCAACCCACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCA-T-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG---GT---ACGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCTAA-CAA-C-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-------------CAATTC-----A----------AC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTT--TATTGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-------A----ACG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCTAA--AA-C-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT--------------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTC-TTGGATTTACAT---TCAAA------------------TTGCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCAT-ACCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACC-AACCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAG-AATTCCAACTGGC--CCAAATCTCCAAA--TAAGAATACGACAGAGCA--TGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TTGGC---------AAA--ACT----TTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCT-GTAAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGCATATA----G-TTTAC-AAGACAAGATACATGT-------AGACATAATTGCC-AAAATATTTCAACTAGCT-AGTTCAGACACAAATCTTGATCTAG--CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACC-TCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTT--CATCGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATG----ACG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCTAAACAA-CATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTA----CACCAA--------ATTCA------ACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACA----CCAAAAGCCAACTTGGTCTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT---AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCAT--TTGGC---------AAA--ACT----TCA-TTTCAAAGCTTAAATTCACA-AC-AACAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGCATATA----GTTTCAC-AAGACAAG-------C-------AGATACAATTGCCAAAAACATTCCAACTAGCT-AGTTCAAACACAAACCTTGATCCAG--CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACC-TCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTT--CATCGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCAT-ACCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATC-AGTTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAAT-ATTTCCAGCTGGG--ACA--TGTCCAAA--CATGAATATAACGGAGC---TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GTGGA---------AAA--ATTAATTTCA-ATTCAACACTTAA-CTCACGTATAATCAT--AACAAA--TG--TAT-GGAGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAG-CTCAC-AAGAAAAGACA-------------AATCTCATTGCC-AAAACATTCCAAC-AACGAAGATCAAAGACAAATGTTAATTCAGCACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CA-TATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG---GTATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAACAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTA----C------------------------AC---AAA--AATTCA-ACTAA
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA----------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT--AA-CAA-C-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATT--CAACTC-----A----------AC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG---G----
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt---G----ACA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT--AA-CAA-C-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTA----CT-CAA--------AATTCAACTCGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tatcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG---GTATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCTAA-CAA-C-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGT------------------------------AC---ACA--AATTCA-ACTAAa
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTC-TTGGGTCAACAT---TC----------------------TGCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCAT-CCCCAGGTCACCTAACCAAA-CAGCCACTAGG----------CCC-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAG--TAAACTCTTCAAA--CAAGAATGAAATAAAACA--AGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TTGGC---------AAA--ACG----TC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCT-GGATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATACATACA----G--------AG---------------------GACATAATTACC-AAAAaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 1111111111 2222 111 000000000000000000000000000000000000 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 111 1111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 3333333 1111 1111 11 1 222 1111 11 111 333333333333333333 111 11 11 11 1111111 22222222 333333333 22222222 1111 111 6666666666666666 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 7777777777 7777 888 5 5 6 1 77 666 2 0 2 7777 000 666 5 5 5 5 5 5 5 66 5 1 444444444444444444444444444444444444 888 66 66 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 000 0 1111111111111111111111111111111111111111111111111111 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 99 8 888 5 0 1 0000000 3 5 3 3 3333 1 1 8888 3 11 3 3 0 555 3 6 8 5555 8 8 1 11 1 444 8 333333333333333333 222 66 6 3 6 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 7777 000 8 0 7777777777777777 0 88 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . .......... .... ... . . . . .. ... . . . .... ... ... . . . . . . . .. . . .................................... ... .. .. .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . ... . .................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. .. . ... . . . ....... . . . . .... . . .... . .. . . . ... . . . .... . . . .. . ... . .................. ... .. . . . .. . . .. .. . ....... . .. . ........ ......... . ........ . . .... ... . . ................ . .. . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 6666666666 0000 888 0 0 2 4 88 888 8 1 5 9999 666 222 0 0 0 0 0 4 0 99 0 4 999999999999999999999999999999999999 888 99 00 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 222 8 8888888888888888888888888888888888888888888888888888 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 44 0 000 6 8 4 2222222 6 0 2 2 4444 4 0 0000 2 00 2 2 8 000 2 4 0 4444 0 0 0 00 0 000 0 000000000000000000 000 88 4 2 0 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 0000 222 0 8 6666666666666666 8 22 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAA-T-----C--A---------AC---ACA--GGTTCN-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAA-------T--A---------AC---ACA--GGTTCN-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTA----CA-CAAATAAACTC--A---------AT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACA----------------TATGCCAAA---GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCATA-CCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATCAA-TCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACATA-TTTTCAGCTGGGGC--TTATCT-CAAAGCCAAGCCAACAA-AGAGCATGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTT-AGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCTTA-GAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAGCT-CACAAAGACAGCATAC---CCTTACCCGAGGCATAAATGCTA-----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-------------CAA-------TTCA---------AC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT---------------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTCTT-GGATTTACA----------------T---TCAAATT-GCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCATA-CCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACCAA-CCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAGA-ATTCCAACTGGCCC--AAATCTCCAAA--TAAGAATACGACAGAGCATGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TT-GGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCTGT-AAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGC----ATATAGTT-TAC-AAGACAAGATACATGT--------AGACATAATTGCCAAAA-TATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTA----CACCAAATT----C--A---------ACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACACCAAAAGCCAACTTGGT---CTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT-AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCA---TTTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-ACAA-CAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAAG-------C--------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCATA-CCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATCAG-TTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAATA-TTTCCAGCTGGGAC----ATGTCCAAA--CATGAATATAACGGAGC-TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GT-GGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TATGG-AGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAGCT-CAC-AAGAAAAGA------C--------AAATCTCATTGCCAAAA-CATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTA----C-------------------------AC---AAA--AATTCA-ACTAA
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA---------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATT--CAACT-----C--A---------AC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTA----CT-CAA-------A--ATTCAACTCGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGT-------------------------------AC---ACA--AATTCA-ACTAAa
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTCTT-GGGTCAACA----------------T---TC----T-GCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCATC-CCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAGTA--AACTCTTCAAA--CAAGAATGAAATAAAACAAGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TT-GGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCTGG-ATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------GACATAATTACCAAAA-aca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 1111111111 2222 111 888888888888888888 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 111 1111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 3333333 1111 1111 11 1 222 1111 11 111 333333333333333333 111 11 11 11 1111111 22222222 333333333 22222222 1111 111 6666666666666666 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 7777777777 7777 888 5 5 6 1 77 666 2 0 2 7777 000 666 5 5 5 5 5 5 5 66 5 1 55 000000000000000000 888 77 66 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 000 0 1111111111111111111111111111111111111111111111111111 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 99 8 888 5 0 1 0000000 3 5 3 3 3333 1 1 8888 3 11 3 3 0 555 3 6 8 5555 8 8 1 11 1 444 8 333333333333333333 222 66 6 3 6 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 7777 000 8 0 7777777777777777 0 88 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . .......... .... ... . . . . .. ... . . . .... ... ... . . . . . . . .. . . .. .................. ... .. .. .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . ... . .................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. .. . ... . . . ....... . . . . .... . . .... . .. . . . ... . . . .... . . . .. . ... . .................. ... .. . . . .. . . .. .. . ....... . .. . ........ ......... . ........ . . .... ... . . ................ . .. . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 6666666666 0000 888 0 0 2 4 88 888 8 1 5 9999 666 222 0 0 0 0 0 4 0 99 0 4 11 444444444444444444 888 99 77 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 222 8 8888888888888888888888888888888888888888888888888888 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 44 0 000 6 8 4 2222222 6 0 2 2 4444 4 0 0000 2 00 2 2 8 000 2 4 0 4444 0 0 0 00 0 000 0 000000000000000000 000 88 4 2 0 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 0000 222 0 8 6666666666666666 8 22 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAAA-------TCAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAA--------TCAAC---ACA--GGTTCN-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTA----CA-CAAATAAAC--TCAAT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACA----------------TATGCCAAA---GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCATA-CCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATCAA-TCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACATA-TTTTCAGCTGGGGC--TTATCT-CAAAGCCAAGCCAACAA-AGAGCATGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTT-AGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCTTA-GAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAGCT-CACAAAGACAGCATAC---CCTTACCCGAGGCATAAATGCTA-----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-------------CAAT-------TCAAC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTCTT-GGATTTACA----------------T---TCAAATT-GCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCATA-CCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACCAA-CCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAGA-ATTCCAACTGGCCC--AAATCTCCAAA--TAAGAATACGACAGAGCATGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TT-GGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCTGT-AAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGC----ATATAGTT-TAC-AAGACAAGATACATGT--------AGACATAATTGCCAAAA-TATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTA----CACCAAAT------TCAACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACACCAAAAGCCAACTTGGT---CTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT-AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCA---TTTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-ACAA-CAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAAG-------C--------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCATA-CCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATCAG-TTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAATA-TTTCCAGCTGGGAC----ATGTCCAAA--CATGAATATAACGGAGC-TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GT-GGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TATGG-AGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAGCT-CAC-AAGAAAAGA------C--------AAATCTCATTGCCAAAA-CATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTA----C----------------AC---AAA--AATTCA-ACTAA
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA---------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATT--CAAC-------TCAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTA----CT-CAAAATTCAACTCGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----CA-CAAAT------TCAAC---a
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTCTT-GGGTCAACA----------------T---TC----T-GCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCATC-CCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAGTA--AACTCTTCAAA--CAAGAATGAAATAAAACAAGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TT-GGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCTGG-ATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------GACATAATTACCAAAA-taaaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 11111111 2222 555555555555555555 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 111 1111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 3333333 1111 1111 11 1 222 1111 11 111 333333333333333333 111 11 11 11 1111111 22222222 333333333 22222222 1111 111 6666666666666666 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 1 66666666 5 66 888 5 5 6 1 77 666 2 0 2 7777 55 666 5 5 5 5 5 5 5 66 5 1 55 999999999999999999 5 888 99 6 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 000 0 1111111111111111111111111111111111111111111111111111 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 99 8 888 5 0 1 0000000 3 5 3 3 3333 1 1 8888 3 11 3 3 0 555 3 6 8 5555 8 8 1 11 1 444 8 333333333333333333 222 66 6 3 6 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 7777 000 8 0 7777777777777777 0 88 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . . ........ . .. ... . . . . .. ... . . . .... .. ... . . . . . . . .. . . .. .................. . ... .. . .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . ... . .................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. .. . ... . . . ....... . . . . .... . . .... . .. . . . ... . . . .... . . . .. . ... . .................. ... .. . . . .. . . .. .. . ....... . .. . ........ ......... . ........ . . .... ... . . ................ . .. . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 4 88888888 0 99 888 0 0 2 4 88 888 8 1 5 9999 11 222 0 0 0 0 0 4 0 99 0 4 11 666666666666666666 0 888 22 7 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 222 8 8888888888888888888888888888888888888888888888888888 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 44 0 000 6 8 4 2222222 6 0 2 2 4444 4 0 0000 2 00 2 2 8 000 2 4 0 4444 0 0 0 00 0 000 0 000000000000000000 000 88 4 2 0 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 0000 222 0 8 6666666666666666 8 22 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----CA-CAAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----C--CAAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTCTT-GGGTTTACA----------------T---CCAAATT-GCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCATA-CCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATCAA-CCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAATA-TTTCCAGCTGGGNC--AAATCTCCAAA--CAAGAATACAACAGAGCATGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TT-GGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCTGG-AAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAGCT-CAC-AAGACAAGATAC---C--------AGACATAATTGCCAAAA-CATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTA----CA-CAAATAAAC--T-CAAT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACA----------------TATGCCAAA---GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCATA-CCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATCAA-TCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACATA-TTTTCAGCTGGGGC--TTATCT-CAAAGCCAAGCCAACAA-AGAGCATGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTT-AGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCTTA-GAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAGCT-CACAAAGACAGCATAC---CCTTACCCGAGGCATAAATGCTA-----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-------------CAAT-------T-CAAC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT-------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTCTT-GGATTTACA----------------T---TCAAATT-GCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCATA-CCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACCAA-CCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAGA-ATTCCAACTGGCCC--AAATCTCCAAA--TAAGAATACGACAGAGCATGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TT-GGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCTGT-AAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGC----ATATAGTT-TAC-AAGACAAGATACATGT--------AGACATAATTGCCAAAA-TATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTA----CACCAAA-------TTCAACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACACCAAAAGCCAACTTGGT---CTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT-AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCA---TTTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-ACAA-CAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAAG-------C--------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCATA-CCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATCAG-TTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAATA-TTTCCAGCTGGGAC----ATGTCCAAA--CATGAATATAACGGAGC-TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GT-GGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TATGG-AGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAGCT-CAC-AAGAAAAGA------C--------AAATCTCATTGCCAAAA-CATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTA----CA-CAAAAAT----T-CAAC---
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT----------------G-C--CA---TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATA--T-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATT--CAAC-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAtaaacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTA----CT-CAAAATTCAACT-CGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTA----CA-CAAAT------T-CAAC---a
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTCTT-GGGTCAACA----------------T---TC----T-GCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCATC-CCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAGTA--AACTCTTCAAA--CAAGAATGAAATAAAACAAGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TT-GGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCTGG-ATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------GACATAATTACCAAAA-taaaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 1111111111 2222 111 44444444 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 11 11111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 3333333 11 111111 11 1 111 111 1111 11 222 333333333333333333 111 11 11 11 1111111 22222222 333333333 22222222 1111 11 6666666666666666 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 7777777777 7777 888 5 5 6 1 77 666 2 0 2 7777 000 666 5 5 5 5 5 5 5 66 5 1 55 9999 5 22222222 5 888 99 6 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 33 0 77777777777777777777777777777777777777777777777777777 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 8 1 8 888 5 0 1 0000000 3 5 3 3 66 1 1 444444 3 11 3 3 111 444 3 6 8 5555 8 8 1 11 1 222 333333333333333333 222 66 6 44 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 7777 44 8 0 7777777777777777 8 0 0 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . .......... .... ... . . . . .. ... . . . .... ... ... . . . . . . . .. . . .. .... . ........ . ... .. . .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . .. . ..................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. . . . ... . . . ....... . . . . .. . . ...... . .. . . ... ... . . . .... . . . .. . ... .................. ... .. . .. .. . . .. .. . ....... . .. . ........ ......... . ........ . . .... .. . . ................ . . . . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 6666666666 0000 888 0 0 2 4 88 888 8 1 5 9999 666 222 0 0 0 0 0 4 0 99 0 4 11 0000 0 88888888 0 888 22 7 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 22 8 55555555555555555555555555555555555555555555555555555 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 0 4 0 000 6 8 4 2222222 6 0 2 2 66 0 4 000000 2 00 2 2 888 000 2 4 0 4444 0 0 0 00 0 000 000000000000000000 000 88 4 00 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 0000 44 0 8 6666666666666666 0 8 2 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAAGATAC---C--------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAAGATAC---C--------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTACA---C-AAATAAAC--T-CAAT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACATATGCCAAA--------------------GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCAT-ACCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATC-AATCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACAT-ATTTTCAGCTGGG--GCTTATCT-CAAAGCCAAGCCAACAA-AGAGCA--TGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTTAGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCT-TAGAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAG-CTCACAAAGACAGCATAC---CCTTACCCGAGGCATAAATGCT-A----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-----------C-AAT-------T-CAAC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTC-TTGGATTTACAT---TCAAA------------------TTGCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCAT-ACCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACC-AACCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAG-AATTCCAACTGGC--CCAAATCTCCAAA--TAAGAATACGACAGAGCA--TGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TTGGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCT-GTAAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGC----ATATAG-TTTAC-AAGACAAGATACATGT--------AGACATAATTGCC-AAAATATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTACA---CCAAA-------TTCAACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACA----CCAAAAGCCAACTTGGTCTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT---AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCAT--TTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-AC-AACAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAAG-------C--------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCAT-ACCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATC-AGTTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAAT-ATTTCCAGCTGGG--AC--ATGTCCAAA--CATGAATATAACGGAGC---TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GTGGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TAT-GGAGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAG-CTCAC-AAGAAAAGA------C--------AAATCTCATTGCC-AAAACATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTACA---C-AAAAAT----T-CAAC---
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA---------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATTC-AAC-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAtaaacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTACT---C-AAAATTCAACT-CGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAAT------T-CAAC---a
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTC-TTGGGTCAACAT---TC----------------------TGCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCAT-CCCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAG--TAAACTCTTCAAA--CAAGAATGAAATAAAACA--AGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TTGGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCT-GGATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------GACATAATTACC-AAAAtaaaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 1111111111 2222 111 44444444 333333 111 2222222 333 11111 11 1 1 11 11 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 11 11111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 3333333 11 111111 11 1 111 111 1111 11 222 333333333333333333 111 11 11 11 1111111 22222222 333333333 22222222 1111 11 6666666666666666 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 7777777777 7777 888 5 5 6 1 77 666 2 0 2 7777 000 666 5 5 5 5 5 5 5 66 5 1 55 9999 5 22222222 5 888 99 6 99 111111 1 111 8888888 3 6 6 6 000 33333 99 0 1 3 0 22 22 2 0 0 1 0 2 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 33 0 77777777777777777777777777777777777777777777777777777 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 8 1 8 888 5 0 1 0000000 3 5 3 3 66 1 1 444444 3 11 3 3 111 444 3 6 8 5555 8 8 1 11 1 222 333333333333333333 222 66 6 44 11 1 0 11 11 8 9999999 8 99 1 99999999 444444444 1 99999999 8 8 7777 44 8 0 7777777777777777 8 0 0 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . .......... .... ... . . . . .. ... . . . .... ... ... . . . . . . . .. . . .. .... . ........ . ... .. . .. ...... . ... ....... . . . . ... ..... .. . . . . .. .. . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . .. . ..................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. . . . ... . . . ....... . . . . .. . . ...... . .. . . ... ... . . . .... . . . .. . ... .................. ... .. . .. .. . . .. .. . ....... . .. . ........ ......... . ........ . . .... .. . . ................ . . . . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 6666666666 0000 888 0 0 2 4 88 888 8 1 5 9999 666 222 0 0 0 0 0 4 0 99 0 4 11 0000 0 88888888 0 888 22 7 22 222222 0 777 8888888 2 7 7 7 888 00000 00 8 0 3 0 55 55 5 0 8 0 0 5 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 22 8 55555555555555555555555555555555555555555555555555555 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 0 4 0 000 6 8 4 2222222 6 0 2 2 66 0 4 000000 2 00 2 2 888 000 2 4 0 4444 0 0 0 00 0 000 000000000000000000 000 88 4 00 00 0 6 00 00 0 2222222 0 44 0 00000000 444444444 4 22222222 8 0 0000 44 0 8 6666666666666666 0 8 2 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAAGATAC---C--------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAAGATAC---C--------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTACA---C-AAATAAAC--T-CAAT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCTATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TGCA-CA--A--CTAGC-CAAACCTTCCCAACAAACACAATTTA-TCTAGGGGAGCTTCAACATTCA--CACAC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACATATGCCAAA--------------------GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCAT-ACCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATC-AATCC-TTCTTGGACGGACAAATGCACTCAAGCAAGGAAAGCTAGCAGGAAAACCTTTACAT-ATTTTCAGCTGGG--GCTTATCT-CAAAGCCAAGCCAACAA-AGAGCA--TGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTTAGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCT-TAGAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAG-CTCACAAAGACAGCATAC---CCTTACCCGAGGCATAAATGCT-A----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-----------C-AAT-------T-CAAC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--TCCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TGTC-CAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCAC-CACCC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT------------------------------AC---ACA--GGTTCT-ATTAACATCCTA--CAT--GTACA--TGCACCAC-ACCCCAT---ACTAATCA----TCTATAA-C-TGC-ACT-TGTTTCA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCACACACC--AACTATTA-AGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGTGG-TAGAT--GA-TCAAAACTTAGTCATACTCA-CGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATC-TTCCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTC-TTGGATTTACAT---TCAAA------------------TTGCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCAT-ACCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACC-AACCC-TTCATTGATTGACAAGTGCATCCAGGCCAGGAAAGATAGCAGGAACGCCTTCAAAG-AATTCCAACTGGC--CCAAATCTCCAAA--TAAGAATACGACAGAGCA--TGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TTGGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCT-GTAAAAAGGTCAAGTCTA-TGT-TAGGTAGAAAC-AC-CAACA--------CCACC----AA---ACCTACAAT-------CAAA-AATGC----ATATAG-TTTAC-AAGACAAGATACATGT--------AGACATAATTGCC-AAAATATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTACA---CCAAA-------TTCAACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--TAC--CACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG---CA--A--CTT-CACAATTGTTTCCTACCAACACTATTTA-CCTTGGAGA-TTTCAACGTCCAC-CATCCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACA----CCAAAAGCCAACTTGGTCTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCAG--CAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT---AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCAT--TTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-AC-AACAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGTCTC-TGC-TAGGCAAACAC-AC-AAACA--------CCACC----ATA--TACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAAG-------C--------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCAT-ACCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATC-AGTTC-TGTTTGGACTGACAACTGCACTCAA--------------CA----AGTCATCAAAT-ATTTCCAGCTGGG--AC--ATGTCCAAA--CATGAATATAACGGAGC---TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GTGGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TAT-GGAGAAAGGTTAAGGCAC-TTT-TAGGCATAATC-AC-TAAAA--------CCACT----TT---TTCAACAAT--------ATA-AACGCATATATATAG-CTCAC-AAGAAAAGA------C--------AAATCTCATTGCC-AAAACATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGCG-TGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTACA---C-AAAAAT----T-CAAC---
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA---------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATTC-AAC-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TGTA-CA--ACTCT--CACAGTTGTTCCCGACAtaaacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTACT---C-AAAATTCAACT-CGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--ACCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TGT--tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAAT------T-CAAC---a
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTC-TTGGGTCAACAT---TC----------------------TGCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCAT-CCCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA---------------AAACGTA--AAGAAA---TTCAAA----------CTGAG--TAAACTCTTCAAA--CAAGAATGAAATAAAACA--AGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TTGGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCT-GGATAAAAGTCAATGCT--CAT-TGGTCAAAAAC-AT-TAAGT--------CAACC----AC---TCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------GACATAATTACC-AAAAtaaaca
blockSeqs : G G CATAT AG G C T A TT C GGGTATGA ACAA . A T T G CC AGT C C GTGT CTA AC A C T . G T G . C A TA AATT C AATTCAAC T TAA AC T . TGCA T . TCAATTA C . C A TTT ATA T T A . CA CT G . G T G . G A A A A A . C . TTT A ATC G G CAAATA A C G T T CT ATA T C . TT CG A C A C TT CCAAAAGCCAACTTGGTCTAAATTTGCTAAT AGC C A A G CA G CTAGTA CA ACA A T G A CT A T C C C AC A C G TCA T C GGCCAGG A G G G CA A A CCGCAA C . C G ATG . C A . C . G G . T T AAAATTA AC TA C CA . C . . G TATGT . C C . ATA T C A . ATAT TT . ATACATGT A A T A T AC CA C C A . TC G G . . AC A . A A CC . . . CGAAC CATGACATACCAAAAACACT AG A A C . C TG G T . . G A T T AT TCT C C . T T A T T C A C A A G A TAC A T G AAA AT T CTGTTGTCCTG TCCTCG CG C A TA T A T AT A G TT CTGGTAATGCT T A
blockSeqs : . . . G . A A A . . GGGTATGA C . . . T G A AGT C C CA CT CA . . . . . A . . . G A A . AAAT . . . . . TAC C . TCAATTA A . . . TC ACT . C . . C C G . G . G . . A A A . . . C . . . TC G . CA G T G T . CT A . A . TT AG A C . T T TTCAAATTGCTAAC GAC A G A . T G . AT . . C A A CT . T A A G T . C . GCA T C GCAGA A G G G G T A CCAA C . C G A . C G . C . . G . C . AAA AT TT T TA . T . . . TCTGC . A C . AA T C T . . T . AC . A T . T AC . C C . . TT G . . . A A . A A AA . . . CAAAC AATAAAATAAACCCAAT A A A C . C . . C . . A . T T A . C C . C C A . T A C A A A G A AAC . A A . AT . CA GA CA A . . A A A . A . T
blockSeqs : . . . G . C A A . . GGTATGA C . . . T G A GGT G C AT CT C . . . . . C . . . G A A . AT . . . . . TT A . AACC A . . . TA A . T . C . . . T . . . . A T . . . . C . . . T . . A C T T T . . A . C . T TA A A T TTCTGCCAGC . G A C . C . . TC . . C T T GG . A A T C A . T . GTT T T A G . A G T T G TAAA C . T A A . C G . T . . T . A . AAA AA T T CA . A . . . ACTTT . T A . TT A T C . . C . C . A . . A AG . T A . . . . . . . T . . . A TT . . . CAATC . T G A . . A . . A . . C . . . A . A A . A T A . T A C A A A . . . A G . AA . AT CC . A . . A . A . . .
blockSeqs : . . . T . C A A . . AGGTA C . . . T T C AGT G C AT CT C . . . . . C . . . T A T . T . . . . . TA C . ACA A . . . T A . G . G G T TA . C T T . . . . . A . . . . . . . . . . AC T . . . . . T . . T . . A . A . AAA . A . C . G . . . TCAT . T G . AC A . . . . . . . . . . T . G T G T T T G . . CA .
blockSeqs : . . . T . A A A . . GGGTA C . . . T G A GG T C . CT C . . . . . T . . . G A A . A . . . . . TA C . TCA A . . . .
blockSeqs : . . . G . . . . . . A C . . . . A G GT A C . . C . . . . . T . . . G . . . C . .
blockSeqs : . . . . . . . . . . T C AG G . . . . . . . . . C . . . . . . . . . .
blockSeqCons : *** A* AGT CT* ** A******* ** TA**** *** A**** ** G****** ** *** C*** ** *** AAA*************** AN* CA ** ** ** TCTGT** T* ******** AN******* C******* C***************
originalCons : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--TACACCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CA--A--CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAGGCCAGGAAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTC-CGT-TAGGCAAAAAC-AC-CAANA--------CCACC----AT---TCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAAGATAC---C--------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
finalCons : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACA-TGGCAGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACATA----CCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TGT--CAA----CT--CACAGTTGTTCCCNACAAACACTATTTA-TCTTGGAGA-TTTCAACGTCCAC-CACCC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCAG------AAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGTC---AT-ATTGC-ANG--AACAACAAACACA---TTGGCAAA---------------ACTTCAN-TTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGGCTCTGT--TAGGCAAAAAC-ACT-AANA--------CCACCAN-------TCCAACAATC-------ANA-AATGC----ATATAG-CTCAC-AAGACAAGC---------------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 1111111111 2222 111 44444444 11111111 111 222222 3333 11111 11 1 1 1 1 1 1 1 11 1 1 1 1 11 111 1 1111 1 2222222 1 1111 1 11 11 222 11 11111111111111111111111111111111111111111111111111111 111 1 11 222222 111 1 11 666666666666 11 111111 11 1 111 111 1111 11 222 333333333333333333 111 11 11 11 11 11 22222 44444444444 22222222 1111 11 777777777777777777777777777 1 11 333 1 1 111 11 2222 222222 11 11 2222 444444444444444444444 555555555555555555555555555555555555 11 1 11 1 2222 2222 1 1 22222222 111 2222 2222 1 111 44444444444 3333333 1 11 11 1 11 33333333333
lowQualScore : 0 5 5 44444 66 5 3 3 3 66 5 7777777777 7777 888 5 5 6 1 99 3 6 2 0 2 7777 000 666 5 5 5 5 5 5 5 66 5 1 55 9999 5 22222222 5 888 99 6 99 33333333 1 111 999999 3 77 6 6 0000 33333 99 0 1 3 0 5 0 0 6 0 0 1 0 8 33 0 3 1 3 0 0 0 0 2 33 777 0 7777 6 0 4444444 1 1 1 2 0 66 0 4444 0 00 33 111 44 2 8 7 0 1 33 0 77777777777777777777777777777777777777777777777777777 111 4 0 1 1 0 00 2 888888 11 777 8 1 1 1 44 0 0 8 1 1 4 5 0 0 44 8 1 8 888 5 0 1 222222222222 3 5 3 3 66 1 1 444444 3 11 3 3 111 444 3 6 8 5555 8 8 1 11 1 222 333333333333333333 222 66 6 44 11 1 0 11 11 8 11 1 44 8 00 1 00000 44444444444 1 99999999 8 8 7777 44 8 333333333333333333333333333 8 0 0 3 3 0 11 55 0 0 555 6 00 1 8 0 44 8 9 777 33 9999 3 888888 3 3 11 33 33 1111 555555555555555555555 000000000000000000000000000000000000 11 1 3 2 0 8 33 0 1 1111 1111 2 0 3 7 99999999 0 777 1 1 1111 1 3 1 8 1 1 1 1 1 1 0 2 3 3333 0 1 3 444 22 8 0 66666666666 0000000 66 1 0 33 0 1 3 1 33 3 0 99 33333333333 1 1
lowQualScore : . . . ..... .. . . . . .. . .......... .... ... . . . . .. . . . . . .... ... ... . . . . . . . .. . . .. .... . ........ . ... .. . .. ........ . ... ...... . .. . . .... ..... .. . . . . . . . . . . . . . .. . . . . . . . . . .. ... . .... . . ....... . . . . . .. . .... . .. .. ... .. . . . . . .. . ..................................................... ... . . . . . .. . ...... .. ... . . . . .. . . . . . . . . . .. . . . ... . . . ............ . . . . .. . . ...... . .. . . ... ... . . . .... . . . .. . ... .................. ... .. . .. .. . . .. .. . .. . .. . .. . ..... ........... . ........ . . .... .. . ........................... . . . . . . .. .. . . ... . .. . . . .. . . ... .. .... . ...... . . .. .. .. .... ..................... .................................... .. . . . . . .. . . .... .... . . . . ........ . ... . . .... . . . . . . . . . . . . . .... . . . ... .. . . ........... ....... .. . . .. . . . . .. . . .. ........... . .
lowQualScore : 6 7 7 33333 77 7 0 4 4 99 0 6666666666 0000 888 0 0 2 4 99 9 2 8 1 5 9999 666 222 0 0 0 0 0 4 0 99 0 4 11 0000 0 88888888 0 888 22 7 22 88888888 0 777 777777 2 77 7 7 8888 00000 00 8 0 3 0 0 0 0 5 0 8 0 0 8 88 0 2 0 2 0 2 0 0 5 88 555 0 2222 5 0 8888888 0 2 0 0 0 00 2 8888 0 22 88 000 55 0 8 3 7 0 22 8 55555555555555555555555555555555555555555555555555555 000 2 2 2 0 0 22 5 888888 55 555 0 4 0 4 66 6 8 0 0 0 6 0 8 8 00 0 4 0 000 6 8 4 000000000000 6 0 2 2 66 0 4 000000 2 00 2 2 888 000 2 4 0 4444 0 0 0 00 0 000 000000000000000000 666 88 4 00 00 0 6 00 00 0 00 4 00 0 22 0 00000 00000000000 4 22222222 8 0 0000 44 0 444444444444444444444444444 0 8 2 2 2 0 00 88 2 2 000 5 55 0 0 0 00 8 0 555 88 8888 2 888888 2 2 55 88 88 2222 222222222222222222222 222222222222222222222222222222222222 00 2 2 5 0 8 88 0 0 2222 2222 8 0 2 0 88888888 2 555 0 0 2222 0 8 4 0 0 0 0 0 4 0 6 5 2 3333 0 4 2 000 00 0 8 88888888888 5555555 88 0 0 88 2 0 2 0 88 2 0 33 33333333333 0 0
consensus : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACN-TGGCGGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--A--CCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TG--T-CA--A--CT--CACAGTTGTTCCCNACAAACACTATTT-ATCTTGGAGA-TTTCAACGTCCACCAC-CC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATCTT-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCA-GC-AGG----AAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-CTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGG--CTCTNTTAGGCAAAAAC-AC-CAANACCA-----CCA----------ATCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAA-------G-C-------------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
Reference ( family-8813 ) : CCAATTCAAGCAACTAGTACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAN-TGGCTTG-ANACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---CG-C--CA---TACGACAAGACA-GACCT-CATGGACA-TGGCAGTGGGNTCATTACATACGT--ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAA-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--A--CCACCACCCCAT---ACTAATCAATTATCTACAA-CCTGC-ACT-TG--T-CA--A--CT--CACAGTTGTTCCCNACAAACACTATTT-ATCTTGGAGA-TTTCAACGTCCACCAC-CC-AACTATTGGAGGC-AACGAAACGGANAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTAGTCATNCTCAACGA-TGGATCCCCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGA-TGTAACCATTGTACC----A-ANCGCCTTATCCGNCATATCCGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCCGTCGCACCCATACGAGGAAACCAAAACCCTNCCAAAGTC-TTGGGTTTACAT---CCAAA------------------TTGCCAAC------------------TTACTCGGCACGATCCAGGTAGANC-AAC-TAGCAGATGACAACATCG------ATCAATATCTGGACAACA---TCAACCAAA-CAATCCACCANGCTGCCGAACAATCCAT-ACCNAGGACATCCGGCTAAAACAACCACTAGGCCA-ATC-AACCC-TNCNTGGACTGACAAATGCACCCA------G----AAAGATAGCAGGAAAGCCTTCAAAT-ATTTCCAGCTGGG--NCAAATCTCCAAA--CAAGAATACAACAGAGCA--TGT---AAACACACTGAA-CATGT-C--AT-ATTGC-ANG--AACAACAAACACA---TTGGC---------AA----A--ACTTCA-NTTCAACACTAAAACTCACGCACAAACAT--ANCAAA--AG--TCT-GGAAAAAGGTCAAGG--CTCTGTTAGGCAAAAAC-AC-TAANACCA-----CCA----------NTCCAACAAT-------CANA-AATGC----ATATAG-CTCAC-AAGACAA-------G-C-------------AGACATAATTGCC-AAAACATTCCAACTAGCT-AG-NTCAGACACAAACCTTGATCCAG-C-CACATACACTAGTCAGGGACCGNTTCAGACAC-AA-ACTTCAAGTCAAAGGACA---CAGGTC--CCAACACNC--AGAGCACTCAAT------CAACCATTCACTTT--GCA--CGA----ACT-----CG--AAC---------AAACACT----------------C-------------------GCACC-NGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAANACCTC----CCTCCTAA----CCTCACGAACATCAT-ACTCCACTTTTACA------A-CCAGCTA---TTCACNAANAA----CCAATTCCCNACATCGTGGAGCAACGCTATAGTCA-TCCCAATTCCNAAACCAAACAAGGATCNCCANGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTC-AA-ACCAG-ATTGAGATGGT---TTCTGGACAAGCAAGGCAAACTGGACCCTGCGCAGAGCGGATTCCGTCCCGGACGCA-GCACAATAGACAATCTTGTCCAACTGGAAACC---------GAAGT-----GATAACGGGNAT-GGC--AAACAGCNAATACACGGGAGCNGTCTTCAT--CGACATCTCCAAAGCTTTCGATCTT-GTCTGGCATGGTGGACTTATCTACAAGCTCCGTCCATCAATTCCACATCACT-GTAATGCTCTATGCTTCATCANGTCCTTCNTCACAGG
gi|1 : CAGCTCAAGCAATTAATACAAGACGAATCTCC-TTCAGTTAT-AT-----GCGTACAGGAGAC-GAGCTTG-AAGCCACAGCACAAATCACC--GAGTGT-ACCAGG-GT-T---TG-T--CAAATTACGACAAGACA-GACCT-CA-------------------CCTTA-----GC--ATATC---A-C-AA----A--CTACAG-A-GA-TCTACCCA-TCGACCA-------TAGGATCC-AGTTGAAGTGTT-AGGTACA---C-AAATAAAC--T-CAAT---AAA--GGTTTC-ATTAACATCTTAAACATTATTACACCT--ATTCCACCA--CGATGGAACTAACC----ACCT-CAGTCCTGT-ACT-TG--CACA--A--CTAGC-CAAACCTTCCCAACAAACACAATTT-ATCTAGGGGAGCTTCAACATTCA-CAC-AC-AAATTCTAGAAGCAAATGCCACAGACAAAGCGGGAAAAG-AGGTCATCCAATTGGTAAGTTGGA-TC--AACTTAGTTATTTTAAACGA-TGAGTCCCACAC-TAGAGATTGAT-CCAATTTACA---GGTAAT-ACCAC-CACGCATTGGA-TGTAACCATCGTACC----ATATAACCATATCGGCCATGTCCAATTGG-ACAGTAGTAA--CAAGAT-CCATTGTGGATCAGTAATCATC-TACCAATCATCTCAACATTTTCTTTTGCA-CCATATGTGGGAAGTAATACACTACCAAAGTC-----GTGTACATATGCCAAA--------------------GCCAACTGGTCCAAATTTGTTTTATTACTCAGTACAATACAGGTTGACA-AAA-TTGCAGATGACAACATTG------ATCAGTATCTGGACAACA---ATAACCAAA-CAATCTATCGTGCTGCTGAACAATCCAT-ACCAAGGACATCTGG-TAAAATAACCACTAGGCCA-ATC-AATCC-TTCTTGGACGGACAAATGCACTCAAGCAAGG----AAAGCTAGCAGGAAAACCTTTACAT-ATTTTCAGCTGGG--GCTTATCT-CAAAGCCAAGCCAACAA-AGAGCA--TGTTAAAAACA-ACTAAATCATGTACTGATCAATAC-ATGCCAACAACCAACACACCCTTAGCCACACCGGGAA----AATATTTCATCTTCAAAATTAAACCTCACGCA-AAACATACAACCAACTAGCCTCT-TAGAGAAGGCTAAAGCACACTTATAGGCAAAAACGACACAAAACTACTCGGCCACCCTCTATCCATCCATCAATTGACCCCCAAACACTGC----ATATAG-CTCACAAAGAC-A-------G-CATACCCTTACCCGAGGCATAAATGCT-A----ACTCT--TTAGCT-TGCATCGG----AAACCTTCCTGCAACC-CACATGCA----------ACCGGTTCAAACAC-
gi|1 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggTTCAGTCAC-AATACTTCAA-TCAAAAGACATTACAGGTCGGCCAACACCCCCAAAGCTTCCAATGTAACACAACC-TTCACTTCTCGCATCCGACCTGACTACAGCCGCTAACCACATACAAAAACACT----------------C-------------------GCACC-TGAGGTTGACAAC-TTACTTCAT-TGA--TGC-TAAACAACCCCTTTGCCTCCCAATTTACCTTAC-AACATTAT-ACTCCACTTCTACATGTACAA-CCAACTC---TTCACAAAAAAAAAACCAAGTTCCAACGTTTTGGAGCAATGATATTGTCA-TCCCAATACCTAAGCCAAACAAGGATCACCATGTTCCTGACTCTTAAAGACCTATATCACTTACCTCGCACTTATGCAAAACCTTTGAAAAAATGCTC-gtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgttcagtcacaatacttcaatcaaaagacattacaggtcggccaacacccccaaagcttccaatgtaacacaaccttcacttctcgcatccgacctgactacagccgctaaccacatacaaaaacactcgcacctgaggttgacaacttacttcattgatgctaaacaacccctttgcctcccaatttaccttacaacattatactccacttctacatgtacaaccaactcttcacaaaaaaaaaaccaagttccaacgttttggagcaatgatattgtcatcccaatacctaagccaaacaaggatcaccatgttcctgactcttaaagacctatatcacttacctcgcacttatgcaaaacctttgaaaaaatgctc
gi|10 : aaacaggtcatcttatctggctcgcaattagttagatgatttcgacctctccttacagggcaatacacctaccaaggagatcagaacacataaacataaacaaaactacgacttgacaatgaacagtctcagtgtcttgcaatggaatgctcgaggtcttcggaccatcattgggcagctcaagcaattaatacaagacgaatctccttcagttatatgcgtacaggagacgagcttgaagccacagcacaaatcaccgagtgtaccagggtttgtcaaattacgacaagacagacctcaccttagcatatcacaaactacagagatctacccatcgaccataggatccagttgaagtgttaggtacacaaataaactcaataaaggtttcattaacatcttaaacattattacacctattccaccacgatggaactaaccacctcagtcctgtacttgcacaactagccaaaccttcccaacaaacacaatttatctaggggagcttcaacattcacacacaaattctagaagcaaatgccacagacaaagcgggaaaagaggtcatccaattggtaagttggatcaacttagttattttaaacgatgagtcccacactagagattgatccaatttacaggtaataccaccacgcattggatgtaaccatcgtaccatataaccatatcggccatgtccaattggacagtagtaacaagatccattgtggatcagtaatcatctaccaatcatctcaacattttcttttgcaccatatgtgggaagtaatacactaccaaagtcgtgtacatatgccaaagccaactggtccaaatttgttttattactcagtacaatacaggttgacaaaattgcagatgacaacattgatcagtatctggacaacaataaccaaacaatctatcgtgctgctgaacaatccataccaaggacatctggtaaaataaccactaggccaatcaatccttcttggacggacaaatgcactcaagcaaggaaagctagcaggaaaacctttacatattttcagctggggcttatctcaaagccaagccaacaaagagcatgttaaaaacaactaaatcatgtactgatcaatacatgccaacaaccaacacacccttagccacaccgggaaaatatttcatcttcaaaattaaacctcacgcaaaacatacaaccaactagcctcttagagaaggctaaagcacacttataggcaaaaacgacacaaaactactcggccaccctctatccatccatcaattgacccccaaacactgcatatagctcacaaagacagcatacccttacccgaggcataaatgctaactctttagcttgcatcggaaaccttcctgcaacccacatgcaaccggttcaaacacgtcattagcatttgtatcttccagcacccaacccccatctctagatattgcatgctcgCCAATTCAAGCAAATAATACAAGACAAATCTCC-TTCAGTTAT-AT-----GTGTACAGGAGAAGTGGC---------------------ACT--GAGCGT-GCCAAG-GT-A---CGACAACA---TACGGCAAGACA-GTCCT-CATGGACA-TGACAGTTGGCTCATTACCTAC----ATATCT-AA-C-AAC-TTAGCCTACCATA-AA-T-TACACA-TCGATTGTGACTT-TAG--TCC-GGTTGAAGTATT-----------C-AAT-------T-CAAC---ACA--GGTTTA-ATTAACATCCTAAACAT--TTAAA--T--T--CCACCACTCCAT---ACTAAAC----ATCTCCAA-CCTCA-ACT-TG--TCCAATA--CT--CACAGTTGTTCCCTAC
gi|11 : ttaaaatcaaaccaaaacatatatacacttacttatggacttgactgtgaatggacttagtgtcttataatggatatatgctcgtagtctctggactcagtgtggA-TTTCAACATCCACCAC-CC-AACTATTGGAGGC-AACAAAACGGAGAAAGCAGGAAAAG-ATGTCGTCCAGTGGGTAGAT--GA-TCAAAACTTGTTCATACTCAATGA-TGGATCACCTAC-TAG-GATTGATCCCAA--TACT---GGTAAC-TCCAC-T--GTGTTGGA-TATAACCATTGTACCAAATA-AACGCCCTATCCGGCATACCTGACTGG-ACTGTAGT-A--CAAGAT-CC-CTGCAGATCGG--ATCATCTT-CCAAGCATCACCACCTTCTCCGTCACAC
gi|12 : tG-GTTGAGATGGT---TTCTGGATAAGCAAGGCACACTGGATCCTGCTCAGAGCGGATTCCGCCCTGGACGCA-GTACAATAGACAATCTTGTCCAGTTAGAAACA---------AAAGT-----GATAACAGGCAT-GGC--AAATAGTCAATACACGGGAGCTGTCTTTAT--TGACATTTCCAAAGCTTTTGATCTT-GTTTGACATGGCGGACTTATATACAAGCTCCA-CCATCAATTCAACATCA-----------TTATGTTTCATTAGGTCTTTCCTCACAGGa
gi|13 : ACATCGTGGAGCAACGCTACAGTCA-TTCCAATTCCCAAACCAAACAAGGATCACCACAAGCCTGATTCCTGCAGACCAATATCACTCGCATCTCACCTAC-TAAAATCTTCGAAAAAATGCTCAAA-ATCAG-ATTTGAATGATAAATTCTGGACAAGGAAGGCAATCTGGACCCTGCGCAGAGTAGATTTCGTCCCGGACGCA-GCACAATAGACAATCTTATCCAACTGGAAA
gi|16 : tGTCCAACTAGACACC---------ATAGT-----GATAACGGGCAT-GGC--AAAGAGTTAAAACACGGGACCTGTCTTTATATTGACATTTCCAAAGCCTTCGATCTT-GTTTGGCATGGTGGACTTAT
gi|2 : CCAGTTCAAGGAACTAGTTCGAGACAAATCGTC-TTCAGTTAT-GT-----GTGTACAGGAGAG-TGGCTTG-GCACCACAAATCAAAACACC--GAGCGT-GC-A------A---CG-C--CA---TACCACAAGACA-GACGT-CATGGACA-TGGCAGTGGGCTC-TTACATACGTGTATATCT-AA---AAC-TTAGCCTACCCCACAA-T-TACACA-TCAATCGAGACTT-TAG--TCT-GGTTGAAGT------------------------------AC---ACA--GGTTCT-ATTAACATCCT--ACAT--GTACA--TGCA--CCA-CACCCCAT---ACTAATC----ATCTATAA--CTGC-ACT-TGTTT-CA--A--CT--CACTGTTGTTTCCCACAAACACTATCTAATCTTGGAGA-TTTCAACGTTCA-CACACC-AACTATT-AAGGA-GACAAGACGGGGAAAGCAGGAAAAATATGTCGTCCAGT-GGTAGAT--GA-TCAAAACTTAGTCATACTC-ACGA-TGGATCTCCTAC-TAG-GATTGACCCCAA--TACT---GGTAAC-TCCAC-T-CGTGTTGGAGTGTAACCATTGTACC----A-AGCGCCTTATCCGGTATATCTGACTGG-ACTGTCTT-A--GAAGAT-CC-ATGCGGGTCAG--ATCATCTT-CCAATCATCACCATCTTCTCAGTCACACCC-TACAAGGAAACCAAAACCCTCCCCAAGTC-TTGGATTTACAT---TCAAA------------------TTGCTAAC------------------TTACTTAGCACCATCCAAGTAGAAC-AACATAGCAGATGACAACATCA------ACAAATATTTGGACAACA---TTAAGCAAA-CAATTCATCAGGCAGTCTACCAATCCAT-ACCTAGACCATTCAGCTAAAACAACCACTAGGCCT-ACC-AACCC-TTCATTGATTGACAAGTGCATCCAGGCCAGG----AAAGATAGCAGGAACGCCTTCAAAG-AATTCCAACTGGC--CCAAATCTCCAAA--TAAGAATACGACAGAGCA--TGC---AAACACACTAAA-CATGT-C--AT-ACTGC-AGA--AACAACAAACTCG---TTGGC---------AA----A--ACTTTA-CTTCAACACTAAAACTCACGCACAAACTT--GCCAAA--AG--TCT-GTAAAAAGGTCAAGT--CTATGTTAGGTAGAAAC-AC-CAACACCA-----CCA----------AACCTACAAT-------CAAA-AATGC----ATATAG-TTTAC-AAGACAAGATACATG-T-------------AGACATAATTGCC-AAAATATTTCAACTAGCT-AG-TTCAGACACAAATCTTGATCTAG---CACATACACTAGTCAGGGACCGCTTTAGACAC-AA-AC------TCAAA-GACA---CAGGTG--CCAACACA---GGAGCATTCAAC------CAACCATTTACCTT--ACA--CGA----ACT-----CG--AAC---------AAACACT------------------------------------GCACC-AGGAGGAGACAAAATTACA-CACCTCA--TGC-TAAAATACCTC----CCTCCTAA----CTTCACGAACATCAT-ACTCCACTTTTACA------A-TCAGCTA---TTTACCAACAA----CCAATTCCCTACATCGTGGAGCAACGCCACAGTCA-TTCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTCACATCTCACCTGTGTAAAACCTTCGAAAAAATGCTCTAC-ACCTG-ATTAAGATAAT---TTCTGGACAAGCAAGGCAATCTGGGCTCTGCGCAGAGTAGATTTCGTACCGGACGCA-GCATAATAGAT-ATCTTGTCCAACTGGAAACCTGTTGTCCTGAAGT-----CCTGACAGGAAT-GAC--AAACAACAAATACACAAGAGCAGTTTTCAT--CGACATCTCCAAAGCTTTTGATTTG-GTCTGGCATGATGGACCTATCTACAAGCTCCGT-CATCAATTCCACATCACTGGTAATGCTCTATGCTTTATCATATCCTTCATCACAGG
gi|3 : CACAAAACAAA-CACC--AAGCGTCGCCAGGTATGA---CG-C--AA----ACGACAAGACA-GACCT-CA-GGACCCTGGCGG--GGGTCATTA-ATACCA--GTATCT-AAAC-AACATTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCCCGGTTGAAGTGGTTAGGTACA---CCAAA-------TTCAACTAAACAACGGTTCTTATTAACATCTTAAACAT--T-ACA--T--A--CCACCACAACAT---ACTAA--AACC-TTTACAG-CCTGCCACTATG----CA--A--CTT-CACAATTGTTTCCTACCAACACTATTT-ACCTTGGAGA-TTTCAACGTCCACCAT-CCTAACTATCGGAGGC-AACGAAACAGATAAAGCAGGTAAAG-ATGTTGTCCAGTGGGCAGAT--GAGTCAAAACTTAGTCATTCTCAATGAATGGATCCCCTACATAG-GATTGATCCCAA--TACTTTTGGTAACATCCACAT-CGT-TGGGA-TGTAACCATTGTAC-----A-ACCACATTATCCGTCATATCTGACTGGTA--GTAAT-ATACAGGATTCC-CTGCGGATCAG--ATCATC-T-CCAATCATCACCACCTTCTCTATCACAACCATACAAGGAAACCAAAAACCCTTCAAAGTCTTTGGATTTACA----CCAAAAGCCAACTTGGTCTAAATTTGCTAAT------------------CTACTTGACACAATCCAATTGGAAC-AAT-TAGCAGATGACAACATCG------AATAATACTTGGATAACA---TCAACCAAG-CAATCAACGAAGCAGCCTACCAGTCCATAACCTAGAACATCAGAGTAAAACAACCAC-AGACCACATCAAACCCGTGCATGGACTGACAAATGCACCCA------GCAGAAAAGATAGAAGGAAAGCCTTCAAGCAATTTCCAATTGGGCCGCAAATCTCCAAA--CAGGAATACAA-AGA-CATGTGT---AAACACACC-AA-GATGT-C--AT-ATTAC-AGG--AACAACAAACCCAT--TTGGC---------AA----A--ACTTCA-TTTCAAAGCTTAAATTCACA-AC-AACAT--ATCAAA--AG--TCTGGGAAAAAGGTCAAGT--CTCTGCTAGGCAAACAC-AC-AAACACCA-----CCAT---------ATACTACAAT-------CA-A-GATGC----ATATAGTTTCAC-AAGACAA-------G-C-------------AGATACAATTGCCAAAAACATTCCAACTAGCT-AG-TTCAAACACAAACCTTGATCCAG---CACATACACTAGTCAGGGACCGCTTTTAGCACAAA-ACTCCAAGTCAAAGGACA---CAGGTC--CCAACATAC--AGAGCACTCAAT------CAAACATTTTAATT--GCA--TGA----ACT-----CA--AAC---------AAACACT----------------CATGACATACCAAAAACACTGCACCAGGGAGGAGACAAAATTACA-TACCTCA--TGCGTAAAACACCTC----CCTCCTAA----CTTCACAAACATCATAACTCCAC-TTTACA------ATTCAGCTA---TTTACCAACAA----TCAATTCCCCACATCGTGGAGCAACGC-ATAGTCATTCCCAATTCCAAAACCAAACAAGGATCCCCAAGAGCCTGACTCCTACAGACCAATATCACTTACATCTCACCTGTGT-AAACCTTCGAAAAAATGCTC-AACACTAGAATTAAGAT-GT---TTCTTGACAAACAAGGAAAATTGGACCCTGCGCAGAGTGGCTTCCGTCCT-GACGCATGCACCATAGACAATCTCGTCCAACTGGAAACA---------TAAGTTCCTCG-CAA--GGAATAGGTTAAAACAACAAATAC-CAGGAGCAGTCTTCAT--CGACATCTCC-AAGCTTTCGATTTTGGTCTGGCATGATGGTCTTATCTACAAGCTCCGTTCACCAATTCCACATCACT-GT
gi|4 : AACCAAA-CAACCCACCATGCTGCGGAACAATCCAT-ACCAAGGACATCTGG-TAAGATAACCACTAAGCCA-ATC-AGTTC-TGTTTGGACTGACAACTGCACTCA------A------------CA----AGTCATCAAAT-ATTTCCAGCTGGG--AC--ATGTCCAAA--CATGAATATAACGGAGC---TGT---AAACACACTGAC-TATGT-T--AT-ATCGC-ATG--AACAGCAAACACA---GTGGA---------AAAATTA--ATTTCA-ATTCAACACT-TAACTCACGTATAATCAT--AACAAA--TG--TAT-GGAGAAAGGTTAAGG--CACTTTTAGGCATAATC-AC-TAAAACCA-----CTT----------TTTCAACAAT--------ATA-AACGCATATATATAG-CTCAC-AAGAAAA-------GAC-------------AAATCTCATTGCC-AAAACATTCCAAC-AACGAAG-ATCAAAGACAAATGTTAATTCAG-CACACATACATTAGTCAGAAATCGATTCAGAAAC-AC-ACTTCAAGTCAAA-GACA---CAGGTC--CCAACACT---AGAGCACTC--T------T-ACCATTCATTTT--GCA--CAA----ACT-----CA--ATC---------AAGCACTAATAAAATAAACCCAAT-------------------GCACC-TGGAGGGGACTAAATTA-A-CATATCATGTGT-TAAAAAATCTT----TCTCCTAA----ACTCAACAACATTAT-ACTCCACTT----A------A-CCATCTATCTTTCACAAAAAT----CCAATTTCCAACACTTCGGAGCAAAGCTATTGTCA-TCCTAATGCCTAAACCAAACAAGGATCGCCATGTTCCTGACACTAACAGACCAATATCACTTACTTTGCACTTGtaa
gi|4 : tTTGAGATGGT---TCCTGAATAAGCAAGGCACACTGGATCCTGCTTAGAGCGGATTCCACCCTGGTCGCA-GTACAATAGCCAACCCTGTCCAACTagatggttcctgaataagcaaggcacactggatcctgcttagagcggattccaccctggtcgcagtacaatagccaaccctgtccaact
gi|5 : taaccaaacaacccaccatgctgcggaacaatccataccaaggacatctggtaagataaccactaagccaatcagttctgtttggactgacaactgcactcaacaagtcatcaaatatttccagctgggacatgtccaaacatgaatataacggagctgtaaacacactgactatgttatatcgcatgaacagcaaacacagtggaaaaattaatttcaattcaacacttaactcacgtataatcataacaaatgtatggagaaaggttaaggcacttttaggcataatcactaaaaccactttttcaacaatataaacgcatatatatagctcacaagaaaagacaaatctcattgccaaaacattccaacaacgaagatcaaagacaaatgttaattcagcacacatacattagtcagaaatcgattcagaaacacacttcaagtcaaagacacaggtcccaacactagagcactcttaccattcattttgcacaaactcaatcaagcactaataaaataaacccaatgcacctggaggggactaaattaacatatcatgtgttaaaaaatctttctcctaaactcaacaacattatactccacttaaccatctatctttcacaaaaatccaatttccaacacttcggagcaaagctattgtcatcctaatgcctaaaccaaacaaggatcgccatgttcctgacactaacagaccaatatcacttactttgcacCCAATTCAAGCAACTAGTACA-GACAACTCTCCGTTCAGTTATGAT-----GTTTACAGG-GAG-TGGCTTGGAAACCACAAAACAAAACACTTTAAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACAAGACCTTCATGTACC-TGGC-GTGGGGTCATTACATAC----ATATCTAAA-CAAAC-TTAGCCTACCGCA-AATT-TACACAGTCAACCGCGACCTGTAG--TCC--GTTGAAGTGGT-AGGTACA---C-AAAAAT----T-CAAC---
gi|6 : aaaacaccacaaaacacaaaaaacgcaaccatctcaaaatacacaaccaaccccaggaaaacaagagacttcgttccctgaacaaacacatccccctgccggaaacagggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatcctatcactgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacatttacacacctactctggacttgactataacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggCCAATTCAAGCAACTAGTACTAGACAAATACCC-TTCAGTTAT-ATCATATGTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCA---------------------TATGACAAGACA-AACCT-CATGGATA-TGGCGGTGGGTTCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TGG--TCT-GTTTGAAGTTGT-ACTCAAAATTC-AAC-------T-CAAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--A--CCACCACCCCAT---ACTAGTCAATTATCTACAA-TCTGC-ACT-TG--TACA--ACTCT--CACAGTTGTTCCCGACAtaaacacggggt
gi|7 : aacatgccatcttgtccggttcggaatacttggaggatatagaagcttttgccctccttctactcagagatttaccagctgtggatactaccggtatggtgtccgaccgttaaaatcaaaacaaaacatttccacacctacttatggacttagtgtcttacaatggaacactcgaagtctccagactcagcgtggCAATTCAAGCAACTAGTACTAGACAAATATCC-TTCAGTTAT-AT-----GTGTACAGGAGAT-TAGCTTG-ACACCACAAAACAAAACACC--GAGCGT-GCCAGG-GT-A---
gi|7 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggt-A---CA-C--CA---CAAAACAAAACA---CC-----GAGCG-TGCCAG-GGTATCATTACATACAT--ATAT---AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAATCGTGACTT-TAG--TCT-GTTTGAAGTGGT-AGGTACT---C-AAAATTCAACT-CGAC---ACA--GGTTCT-ATTAACATCCTAAACAT--TTACA--T--A--CCACCACCCCAT---ACTAGTCAATTATCTACAA-CCTGC-ACT-TG--T-tcattacatacatatataacaacttagcctaccgcaaattacacatcaatcgtgactttagtctgtttgaagtggtaggtactcaaaattcaactcgacacaggttctattaacatcctaaacatttacataccaccaccccatactagtcaattatctacaacctgcacttgta
gi|8 : caggtcatcttgtccggttcggaatacttggaggatatagaagcttttgccctctctactcaagagattcaccaactatgaaagactaccggtatggtctccgaccgttaaaatcaaaacaaaacatttccacaccataagtggacttgtgtcttacagtggaacactcgtagtctcgtggtcaattcaagcaactagtactagacaaatatccttcagttatatgtgtacaggagattagcttgCCAATTCAAGCAACTAGTACAAGACAACTCTCC-TTCAGTTAT-AT-----GTTTACAGGAGAG-TGGCTTG-AAACCACAAA-CAAAACACT--AAGCGT-GCCAGG-GT-ATGACG-C--CA---TACGACAAGACA-GACCT-CATGTACC-TGGCAGTGGGGTCATTACATAC----ATATCT-AA-C-AAC-TTAGCCTACCGCA-AA-T-TACACA-TCAACCGCGACTT-TAG--TCC-GGTTGAAGTGGT-AGGTACA---C-AAAT------T-CAAC---a
gi|9 : aggtcatcttgtccagtgcggaatactcggaggagatagatatttttgatctatctctgctcagagattcaccacctaaggagactctggtctccgactaataccaaacaaaacagtttacacactactcatggacttgactattaacggactaagtgtcttacaatggaacgcttatggtctcaggactcagtgtggAGTC-TTGGGTCAACAT---TC----------------------TGCCAGC------------------TGGTTC---ACGATTTAGGCAGACCGAAC-TA-CACACGAGAACATTACTAGTAATCAATATCTAAACAACAACATCAAGCAAAACAATCCAGCAGGATGATAAACTA-CCAT-CCCCAGGTCACCTAACCAAA-CAGCCACTAGGCC----------C-TA---GGAC-GATAAA-------------------AAACGTA--AAGAAA---TTCAAA----------CTGAG--TAAACTCTTCAAA--CAAGAATGAAATAAAACA--AGT---AAACATACTGAA-CACGT-T--AT-CTTGTGAAA--AACAACAGACACA---TTGGC---------AA----A--ACGTC----TCAACAC-AACACTCGTGTACAAACAT--GGGCAC--AG--TCT-GGATAAAAGTCAATG--CTC-ATTGGTCAAAAAC-AT-TAAGTCAA-----CCA----------CTCCAACAAA-------TACA-AATAC----ATACAG--------AG----------------------------GACATAATTACC-AAAAtaaaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACACCTACAAAACGTAAAACACCCCAAAAATTCAAAACCTCATCACACACAACCAACCCCAGGCAACAAAAGACTTCGTTCCTCTGACATGGAGGATGAGCAATCATCCCCAGCCGGAAACA
Unaligned ( gi|15 ): TAAAATCAAACCAAAACATATATACACGTACTTATGGACTTGACTATGAATGAACTTCGTGTCTTATAATAGAACGCTCGTAGTCTCCGGACTCAGTGTGGCCAATTCAAGCAACTAG
Unaligned ( gi|17 ): GGTAAGAAGAGAGGTCGATCACCTGGTGTTGAGGATGACACGTCATCCCCCTGTCA