lowQualScore : 11 333333333333333333333333333333 1111111 1 1 1111111 111 11 1
lowQualScore : 999 44 2 8 2 2 6 11 555555555555555555555555555555 2 99 3333333 4 3 2 0 2 2 2 99 5 2 444 0 33 2 1 4444444 1 6 3 1 555 33 2
lowQualScore : ... .. . . . . . .. .............................. . .. ....... . . . . . . . .. . . ... . .. . . ....... . . . . ... .. .
lowQualScore : 000 22 9 0 7 7 2 77 888888888888888888888888888888 4 55 5555555 2 3 7 9 3 7 5 99 3 7 777 7 77 7 2 6666666 9 2 1 0 444 22 3
consensus : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATA-CTCTTCACGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGA---AT-AA--AA-TGT----C--TCACGACTG-AA-TGATTCATAACCCAAATA-AAAT-TAAAATTAAAT
Reference ( gi|9 ) : TTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTTATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATA-CTCTTCATGACC-TAATGATGAAT-AATCCGAATAAAAAT-GT-TTCAAT-A-C-CCGA---AT-AA--AA-TGT----C--TCACGACTG-AA-TGATTCATAGCTCAAATG-AAAT-TAAAATTAAAT
gi|3 : TCACTAAGTAATTAGTA-C-TGC-GTAGCGTCATAGTAGT--CGTAGG-C--C-T----AA---ATCAAAA-T-TATATA----TTTAT--------TG-TTAAT-AATCCGAATAAAA-T-AG-TTCAAT-GGCGCCGA---AA-AA--AA-TGT----C--TCAC-ACTA-AATTGATTCAGAACCCAAAAG-AAAT-TGAAATAAAA
gi|16 : TCAC---GTAA--AGTAAC-T-C-GT-TTGTTATAGTAGA--GGT--T-C--C-T----AA---A-----A---AATATA-CTCCTCACGACC-TAAactgtaaatgcaaatgaattgaattaa
gi|17 : tgaTCAC-AAGCAA--AGTAAA-T-C-GT-TCGTCATAGTAGT--CGT--T-C--CTT----AA---A-----A----AAACA-TTC-TCACGAAC-AAATGActaaacaaattaa
gi|2 : aCAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTA-TT-TTCACGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGA---AT-AA--AA-T-T----A--TCACGACTGAAA-TGATTCATA----AAACA-AAATATAAAATTAAAa
gi|1 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTA-TT-TTCACGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGA---AT-AA--AA-T-T----A--TCACGACTGAAA-TGATTCATA----AAACA-AAATATAAAATTAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|7 : CAC-A-GTAA--AGTAA--T-C-GT--CGTCATAGT-GT--CGT----A--C-T----AACGAA-----A-T-TATTT---TTTTCACGACC--AACGATTA-T-AACCC--ATAAAAAT-GT-TTCAAA-A-T-ACGA---AT-AA--AA-TGT-------TCACGCCTG-AA-TG-TTCAAATATCAAATATAAAT-TAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|12 : C-AAG-AA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-TAAT-A----AA---A-----A-A-AATATA-CTTTTCACAA-C-TA----------AACCCGAATAAAAAT-GT-T------------GA---A-------------------------CTG-AA-TAAATAATAACCCAAATA-AATT-TTTAATTAAAcatatggataaactgatggagtattaatgttttacc
gi|8 : -AAGTAA--AGAAAC-T-C-GA-TCATCATAGAAGT--TGT--T-C--C-TTG--AA---A-----A----ATATA-CTCCTCACAAAC-TAATGATCAAT-AACCTGAATAAACATCAT-TTCAATAA-C-CCGA---ATAAA--AA-TAT----T--TAGCTACTG-AA-TGAATCAAAACCCAAATG-AATT-TAAAATTAAActgaa
gi|15 : aact-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGTAACG----------------A---A-----A-T--ATATAACTTTTCACGGCCACAA-GATTAAT-AATCCGAATAAAAAT-GT-TTCAcgga
gi|10 : caAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----AAT-TATATA-CTATTCACGAAC-TAATGATTAAT-AATCCGAATAAAACT-GT-TTCAATAA-C-CCGA---AT-AA--AA-TGT----C--TAACAACTG-AA-TAATTCATAACCCGGCTA-AATT-TAAAATTAAA
gi|4 : AA--AG-AAC-T-CAGT-TC-TCAT--TAGT--AGC--TAC--C-T----AACGAA-----A------ATA-TT-TTCACGAAC-CACAAATTAATGAATCCCAATAAAA-T-GTGTTCAAT-A-C-CCGA---AT--A--AA-TGT----T--TCACGACTG-AA-TGATTCAAAAATCA---G-AAATATAAAATAAAATctga
gi|11 : acagA--AGTAAC-T-T-GT-TCGTCATAGTAAT--CGT--T-C--C-T----AA---A-----A-TATATATA-C---------------TGATTAAT-AATCCGAATTAAAAT-GT-TTCAAT-A-C-CCGA---AT-AA--AA-TGT----C--TCACGACTG-AA-TGATTCATAACCCAAATA-AAAT-TAAAATCAAAaaactggaaatcaaaatgaatgagattaacggtttac
gi|5 : t--AGTAACCT-T-GT-TC-----AGTAATT-CCT--T-C--G-T----CA---A-----A----ATATA-CTC-------CT-TAATTACGA------CCTACTG------GT-T---AT-A-C-CAGA---AT-AA--AAATGT----TAATAACGACTG-AA-TAAATATTAACCCAAATA-AAAT-TGAATTTActgaa
gi|19 : ggAC-T-C-GA-TCGTCATGGTAGT--CGT--T-C--C-TAAAAAA---A-----A-TATATATA-Ctcaaagataatgttaaaattaaaactaacaaatgggtgtttgtttgatattaaaac
gi|6 : -C-GT-TCA--ATA--ACT--CAT--T-C--A-T----CA---A-----A----ATATA-CTTCTTACGACT-GAATGATTAAT-AACCCGAATAA--------TTTAAC-G-A-CCGA---AT-AAATAA-TGA----C--CCA
gi|18 : ttgaataaATATA-CTCTTCACGACT-TAATGATTAAT-AAACGGAAT-AAAAT-GT-TTCATT-A-C-CCGA---AT-AA--AA-Taagaaatttatgaaagagaatgttattaattaataaaatcaaaactaacaaacaggtgtttgtgtgattgacattaagact
gi|13 : ATA-CTCTTCACAAAC-TAATGATTGAT-AAGCCGAATAAAAAT-GT-TTCAATAA-C-CCGA---ATAAA--AA-TGT----T--GAACGACTG-AA-TAAATAATAACCCAAAT--AAATGTTAAATTAAA
gi|14 : TGATCAAT-AACCCGAATAAAAAT-AG-TTTAAT-AGC-CCGA---GTGAA--AA-TGT----T--TAACGACTA-AT-TGGATCGTATCCCAAAT--AAAG-CGAAAGTAAActgaa
gi|6 : g-TTCAAT-A-A-CTCATTCATCAA--AA-TATACTTC--TTACGACTG-AA-TGATTAATAACCCGAAT--AATT-TAActga
Alignments
lowQualScore : 11 11111111111111 22222222222222 1111
lowQualScore : 4 6 33 2 7 2 2 00 00000000000000 99999999999999 88 5555 3 88 3 2 1 0 2 2 3333 2 8 0 3 777 0 5 2 2 0 2 33 5 33 5
lowQualScore : . . .. . . . . .. .............. .............. .. .... . .. . . . . . . .... . . . . ... . . . . . . .. . .. .
lowQualScore : 0 5 99 7 5 5 5 99 99999999999999 99999999999999 77 0000 2 88 5 5 1 1 5 5 0000 7 0 7 6 444 1 7 9 0 9 9 99 7 44 7
consensus : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
Reference ( family-8787 ) : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
gi|1 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|10 : AGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----AAT-TATATACTATTCA----CGAAC-TAATGATTAAT-AATCCGAATAAAACT-GT-TTCAATAA-C-CCGAAT-AAAATGTCTAACAACTG-AA-TAATTCATAAC-CC--GGCTA-AA-TT-TAAAATTAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|11 : A--AGTAAC-T-T-GT-TCGTCATAGTAAT--CGT--T-C--C-T----AA---A-----A-TATATATAC-------------------TGATTAAT-AATCCGAATTAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATCAAActga
gi|12 : tC-AAG-AA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-TAAT-A----AA---A-----A-A-AATATACTTTTCA----CAA-C-TA----------AACCCGAATAAAAAT-GT-T------------GA----------------ACTG-AA-TAAATAATAAC-CC--AAATA-AA-TT-TTTAATTAAActgaa
gi|13 : ATACTCTTCA----CAAAC-TAATGATTGAT-AAGCCGAATAAAAAT-GT-TTCAATAA-C-CCGAATAAAAATGTTGAACGACTG-AA-TAAATAATAAC-CC--AAATA-AATGT-T-AAATTAAActgaa
gi|14 : TGATCAAT-AACCCGAATAAAAAT-AG-TTTAAT-AGC-CCGAGTGAAAATGTTTAACGACTA-AT-TGGATCGTATC-CC--AAATA-AA-G--CGAAAGTAAActgaa
gi|15 : g-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGTAACG----------------A---A-----A-TATATA-ACTTTTCA----CGGCCACAA-GATTAAT-AATCCGAATAAAAAT-GT-TTCActga
gi|16 : caTCAC---GTAA--AGTAAC-T-C-GT-TTGTTATAGTAGA--GGT--T-C--C-T----AA---A-----A---AATATACTCCTCA----CGACC-TAA
gi|17 : tgaTCAC-AAGCAA--AGTAAA-T-C-GT-TCGTCATAGTAGT--CGT--T-C--CTT----AA---A-----A----AAACATTC-TCA----CGAAC-AAATGActaaacaaattaa
gi|18 : aATATACTCTTCA----CGACT-TAATGATTAAT-AAACGGAAT-AAAAT-GT-TTCATT-A-C-CCGAAT-AAAATa
gi|19 : AC-T-C-GA-TCGTCATGGTAGT--CGT--T-C--C-TAAAAAA---A-----A-TATATATAC
gi|2 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|3 : TCACTAAGTAATTAGTA-C-TGC-GTAGCGTCATAGTAGT--CGTAGG-C--C-T----AA---ATCAAAA-T-TATATATT---------------TATTG-TTAAT-AATCCGAATAAAA-T-AG-TTCAAT-GGCGCCGAAA-AAAATGTCTCAC-ACTA-AATTGATTCAGAAC-CC--AAAAG-AA-AT-TGAAATAAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|4 : AA--AG-AAC-T-CAGT-TC-TCAT--TAGT--AGC--TAC--C-T----AACGAA-----A------ATATT-TTCA----CGAAC-CACAAATTAATGAATCCCAATAAAA-T-GTGTTCAAT-A-C-CCGAAT-AAA-TGTTTCACGACTG-AA-TGATTCAAAAA-TCAGAAATATAA-AA-TAAAA-TAAAactgtaaatgcaaatgaattgaattaa
gi|5 : acag--AGTAACCT-T-GT-TC-----AGTAATT-CCT--T-C--G-T----CA---A-----A----ATATACTCCTTAATTACGACC-TACTGGTTA-T-A-CCAGAATAAAAAT-GT-T-------------AAT-AA---------CGACTG-AA-TAAATATTAAC-CC--AAATA-AA-AT-TGAATTTActggaaatcaaaatgaatgagattaacggtttac
gi|6 : gg-C-GT-TCA--ATA--ACT--CAT--T-C--A-T----CA---A-----A----ATATACTTCTTA----CGACT-GAATGATTAAT-AACCCGAATAA--------TTTAAC-G-A-CCGAAT-AAA----------------------TAATGAC-CC--AAAGA-AA-TT-TAtcaaagataatgttaaaattaaaactaacaaatgggtgtttgtttgatattaaaac
gi|7 : ttgaataaCAC-A-GTAA--AGTAA--T-C-GT--CGTCATAGT-GT--CGT----A--C-T----AACGAA-----A-T-TATTT--TTTTCA----CGACC--AACGATTA-T-AACCC--ATAAAAAT-GT-TTCAAA-A-T-ACGAAT-AAAATGT-TCACGCCTG-AA-TG-TTCA-AATATC--AAATATAA-AT-TAAAtgaaagagaatgttattaattaataaaatcaaaactaacaaacaggtgtttgtgtgattgacattaagact
gi|8 : -AAGTAA--AGAAAC-T-C-GA-TCATCATAGAAGT--TGT--T-C--C-TTG--AA---A-----A----ATATACTCCTCA----CAAAC-TAATGATCAAT-AACCTGAATAAACATCAT-TTCAATAA-C-CCGAATAAAAATATTTAGCTACTG-AA-TGAATCAAAAC-CC--AAATG-AA-TT-TAAAATTAAAcatatggataaactgatggagtattaatgttttacc
gi|9 : aactTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTTATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----TGACC-TAATGATGAAT-AATCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAGC-TC--AAATG-AA-AT-TAAAATTAAATcgga
Alignments
lowQualScore : 11 11111111111111 22222222222222 1111
lowQualScore : 4 6 33 2 7 2 2 00 00000000000000 99999999999999 88 5555 3 88 3 2 1 0 2 2 3333 2 8 0 3 777 0 5 2 2 0 2 33 5 33 5
lowQualScore : . . .. . . . . .. .............. .............. .. .... . .. . . . . . . .... . . . . ... . . . . . . .. . .. .
lowQualScore : 0 5 99 7 5 5 5 99 99999999999999 99999999999999 77 0000 2 88 5 5 1 1 5 5 0000 7 0 7 6 444 1 7 9 0 9 9 99 7 44 7
consensus : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
Reference ( family-8787 ) : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
gi|1 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|10 : AGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----AAT-TATATACTATTCA----CGAAC-TAATGATTAAT-AATCCGAATAAAACT-GT-TTCAATAA-C-CCGAAT-AAAATGTCTAACAACTG-AA-TAATTCATAAC-CC--GGCTA-AA-TT-TAAAATTAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|11 : A--AGTAAC-T-T-GT-TCGTCATAGTAAT--CGT--T-C--C-T----AA---A-----A-TATATATAC-------------------TGATTAAT-AATCCGAATTAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATCAAActga
gi|12 : tC-AAG-AA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-TAAT-A----AA---A-----A-A-AATATACTTTTCA----CAA-C-TA----------AACCCGAATAAAAAT-GT-T------------GA----------------ACTG-AA-TAAATAATAAC-CC--AAATA-AA-TT-TTTAATTAAActgaa
gi|13 : ATACTCTTCA----CAAAC-TAATGATTGAT-AAGCCGAATAAAAAT-GT-TTCAATAA-C-CCGAATAAAAATGTTGAACGACTG-AA-TAAATAATAAC-CC--AAATA-AATGT-T-AAATTAAActgaa
gi|14 : TGATCAAT-AACCCGAATAAAAAT-AG-TTTAAT-AGC-CCGAGTGAAAATGTTTAACGACTA-AT-TGGATCGTATC-CC--AAATA-AA-G--CGAAAGTAAActgaa
gi|15 : g-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGTAACG----------------A---A-----A-TATATA-ACTTTTCA----CGGCCACAA-GATTAAT-AATCCGAATAAAAAT-GT-TTCActga
gi|16 : caTCAC---GTAA--AGTAAC-T-C-GT-TTGTTATAGTAGA--GGT--T-C--C-T----AA---A-----A---AATATACTCCTCA----CGACC-TAA
gi|17 : tgaTCAC-AAGCAA--AGTAAA-T-C-GT-TCGTCATAGTAGT--CGT--T-C--CTT----AA---A-----A----AAACATTC-TCA----CGAAC-AAATGActaaacaaattaa
gi|18 : aATATACTCTTCA----CGACT-TAATGATTAAT-AAACGGAAT-AAAAT-GT-TTCATT-A-C-CCGAAT-AAAATa
gi|19 : AC-T-C-GA-TCGTCATGGTAGT--CGT--T-C--C-TAAAAAA---A-----A-TATATATAC
gi|2 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|3 : TCACTAAGTAATTAGTA-C-TGC-GTAGCGTCATAGTAGT--CGTAGG-C--C-T----AA---ATCAAAA-T-TATATATT---------------TATTG-TTAAT-AATCCGAATAAAA-T-AG-TTCAAT-GGCGCCGAAA-AAAATGTCTCAC-ACTA-AATTGATTCAGAAC-CC--AAAAG-AA-AT-TGAAATAAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|4 : AA--AG-AAC-T-CAGT-TC-TCAT--TAGT--AGC--TAC--C-T----AACGAA-----A------ATATT-TTCA----CGAAC-CACAAATTAATGAATCCCAATAAAA-T-GTGTTCAAT-A-C-CCGAAT-AAA-TGTTTCACGACTG-AA-TGATTCAAAAA-TCAGAAATATAA-AA-TAAAA-TAAAactgtaaatgcaaatgaattgaattaa
gi|5 : acag--AGTAACCT-T-GT-TC-----AGTAATT-CCT--T-C--G-T----CA---A-----A----ATATACTCCTTAATTACGACC-TACTGGTTA-T-A-CCAGAATAAAAAT-GT-T-------------AAT-AA---------CGACTG-AA-TAAATATTAAC-CC--AAATA-AA-AT-TGAATTTActggaaatcaaaatgaatgagattaacggtttac
gi|6 : gg-C-GT-TCA--ATA--ACT--CAT--T-C--A-T----CA---A-----A----ATATACTTCTTA----CGACT-GAATGATTAAT-AACCCGAATAA--------TTTAAC-G-A-CCGAAT-AAA----------------------TAATGAC-CC--AAAGA-AA-TT-TAtcaaagataatgttaaaattaaaactaacaaatgggtgtttgtttgatattaaaac
gi|7 : ttgaataaCAC-A-GTAA--AGTAA--T-C-GT--CGTCATAGT-GT--CGT----A--C-T----AACGAA-----A-T-TATTT--TTTTCA----CGACC--AACGATTA-T-AACCC--ATAAAAAT-GT-TTCAAA-A-T-ACGAAT-AAAATGT-TCACGCCTG-AA-TG-TTCA-AATATC--AAATATAA-AT-TAAAtgaaagagaatgttattaattaataaaatcaaaactaacaaacaggtgtttgtgtgattgacattaagact
gi|8 : -AAGTAA--AGAAAC-T-C-GA-TCATCATAGAAGT--TGT--T-C--C-TTG--AA---A-----A----ATATACTCCTCA----CAAAC-TAATGATCAAT-AACCTGAATAAACATCAT-TTCAATAA-C-CCGAATAAAAATATTTAGCTACTG-AA-TGAATCAAAAC-CC--AAATG-AA-TT-TAAAATTAAAcatatggataaactgatggagtattaatgttttacc
gi|9 : aactTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTTATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----TGACC-TAATGATGAAT-AATCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAGC-TC--AAATG-AA-AT-TAAAATTAAATcgga
blockSeqs : T A TT C T A A AA TCCTAAAA ATCAAAATT AT ATTA A AC T G T C G TAA G A G CTA A T T A AG T TG A
blockSeqs : . A . . G . . G TTAATA CGAAATT TT . A AC T . T . . TAA . G G CTC . . T . . T T .
blockSeqs : . A . . . . . T AGGCCT CGAAAT CT . C T T . C . . TAG . A G TGA . . A . . . A .
blockSeqs : . A . . . . . . TCCTTG AAATT TT . C T T . G . . TGG . . G TTA . . A . . . T .
blockSeqs : . A . . . . . . TCCTT AATAT CC . A T T . C . . TAA . . G ATC . . A . . . G .
blockSeqs : . A . . . . . . TACCT AATAT CT . C T T . T . . TA . . G CTC . . T . . . A .
blockSeqs : . A . . . . . . TCCT AATAT CC . C A T . A . . TA . . G TTC . . T . . . A .
blockSeqs : . . . . . . . . TCCT CGAAA TC . A T A . T . . TA . . A TTA . . T . . . A .
blockSeqs : . . . . . . . . TCCT AAAA TT . C T T . T . . CG . . G CTC . . A . . . A .
blockSeqs : . . . . . . . TCGT AATT CC . C C T . T . . AA . . . TC . . T . . . T .
blockSeqs : . . . . . . TCAT AAA CT . C T C . C . . TA . . . . . . A . . . A .
blockSeqs : . . . . . . TCCT AA C . A G T . C . . A . . . . . . T . . . T .
blockSeqs : . . . . . . GCT AA T . C T T . C . . . . . . . . . . . . . A .
blockSeqs : . . . . . ACT AA T . . T . . C . . . . .
blockSeqs : . . . . . AA . . . . . . T . .
blockSeqs : . . . . .
blockSeqCons : ** TCCT********** AATT********** CT T* TA**
originalCons : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
finalCons : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGTTCCT----------AAAATT----------ATATACTCTTCA----CGACCT-AATGATTAAT-AACCCGAATAAAAAT-GT-TTCAATA--C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
Alignments
lowQualScore : 11 11111111111111 22222222222222 1111
lowQualScore : 4 6 33 2 7 2 2 00 00000000000000 99999999999999 88 5555 3 88 3 2 1 0 2 2 3333 2 8 0 3 777 0 5 2 2 0 2 33 5 33 5
lowQualScore : . . .. . . . . .. .............. .............. .. .... . .. . . . . . . .... . . . . ... . . . . . . .. . .. .
lowQualScore : 0 5 99 7 5 5 5 99 99999999999999 99999999999999 77 0000 2 88 5 5 1 1 5 5 0000 7 0 7 6 444 1 7 9 0 9 9 99 7 44 7
consensus : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
Reference ( family-8787 ) : NTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----CGACC-TAATGATTAAT-AACCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATTAAAT
gi|1 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|10 : AGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-C--C-T----AA---A-----AAT-TATATACTATTCA----CGAAC-TAATGATTAAT-AATCCGAATAAAACT-GT-TTCAATAA-C-CCGAAT-AAAATGTCTAACAACTG-AA-TAATTCATAAC-CC--GGCTA-AA-TT-TAAAATTAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|11 : A--AGTAAC-T-T-GT-TCGTCATAGTAAT--CGT--T-C--C-T----AA---A-----A-TATATATAC-------------------TGATTAAT-AATCCGAATTAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAAC-CC--AAATA-AA-AT-TAAAATCAAActga
gi|12 : tC-AAG-AA--AGTAAC-T-C-GT-TCGTCATAGTAGT--CGT--T-TAAT-A----AA---A-----A-A-AATATACTTTTCA----CAA-C-TA----------AACCCGAATAAAAAT-GT-T------------GA----------------ACTG-AA-TAAATAATAAC-CC--AAATA-AA-TT-TTTAATTAAActgaa
gi|13 : ATACTCTTCA----CAAAC-TAATGATTGAT-AAGCCGAATAAAAAT-GT-TTCAATAA-C-CCGAATAAAAATGTTGAACGACTG-AA-TAAATAATAAC-CC--AAATA-AATGT-T-AAATTAAActgaa
gi|14 : TGATCAAT-AACCCGAATAAAAAT-AG-TTTAAT-AGC-CCGAGTGAAAATGTTTAACGACTA-AT-TGGATCGTATC-CC--AAATA-AA-G--CGAAAGTAAActgaa
gi|15 : g-AAGTAA--AGTAAC-T-C-GT-TCGTCATAGTAGTAACG----------------A---A-----A-TATATA-ACTTTTCA----CGGCCACAA-GATTAAT-AATCCGAATAAAAAT-GT-TTCActga
gi|16 : caTCAC---GTAA--AGTAAC-T-C-GT-TTGTTATAGTAGA--GGT--T-C--C-T----AA---A-----A---AATATACTCCTCA----CGACC-TAA
gi|17 : tgaTCAC-AAGCAA--AGTAAA-T-C-GT-TCGTCATAGTAGT--CGT--T-C--CTT----AA---A-----A----AAACATTC-TCA----CGAAC-AAATGActaaacaaattaa
gi|18 : aATATACTCTTCA----CGACT-TAATGATTAAT-AAACGGAAT-AAAAT-GT-TTCATT-A-C-CCGAAT-AAAATa
gi|19 : AC-T-C-GA-TCGTCATGGTAGT--CGT--T-C--C-TAAAAAA---A-----A-TATATATAC
gi|2 : CAC-A-GTAA--AGTAAC-TTC-GT-T-GTCATAGTAGTG-CGT--G-C----T----AACG-A-----A-A-TAAGTATT-TTCA----CGACCACAA-GATTAAT-AATCCCAATAAAAAT-GT-TTCAA--A-C-CCGAAT-AAAAT-TATCACGACTGAAA-TGATTCATA-------AAACA-AA-ATATAAAATTAAA
gi|3 : TCACTAAGTAATTAGTA-C-TGC-GTAGCGTCATAGTAGT--CGTAGG-C--C-T----AA---ATCAAAA-T-TATATATT---------------TATTG-TTAAT-AATCCGAATAAAA-T-AG-TTCAAT-GGCGCCGAAA-AAAATGTCTCAC-ACTA-AATTGATTCAGAAC-CC--AAAAG-AA-AT-TGAAATAAAAcataaactggaaatcaaaaaatgaatggaggtattaaactgttt
gi|4 : AA--AG-AAC-T-CAGT-TC-TCAT--TAGT--AGC--TAC--C-T----AACGAA-----A------ATATT-TTCA----CGAAC-CACAAATTAATGAATCCCAATAAAA-T-GTGTTCAAT-A-C-CCGAAT-AAA-TGTTTCACGACTG-AA-TGATTCAAAAA-TCAGAAATATAA-AA-TAAAA-TAAAactgtaaatgcaaatgaattgaattaa
gi|5 : acag--AGTAACCT-T-GT-TC-----AGTAATT-CCT--T-C--G-T----CA---A-----A----ATATACTCCTTAATTACGACC-TACTGGTTA-T-A-CCAGAATAAAAAT-GT-T-------------AAT-AA---------CGACTG-AA-TAAATATTAAC-CC--AAATA-AA-AT-TGAATTTActggaaatcaaaatgaatgagattaacggtttac
gi|6 : gg-C-GT-TCA--ATA--ACT--CAT--T-C--A-T----CA---A-----A----ATATACTTCTTA----CGACT-GAATGATTAAT-AACCCGAATAA--------TTTAAC-G-A-CCGAAT-AAA----------------------TAATGAC-CC--AAAGA-AA-TT-TAtcaaagataatgttaaaattaaaactaacaaatgggtgtttgtttgatattaaaac
gi|7 : ttgaataaCAC-A-GTAA--AGTAA--T-C-GT--CGTCATAGT-GT--CGT----A--C-T----AACGAA-----A-T-TATTT--TTTTCA----CGACC--AACGATTA-T-AACCC--ATAAAAAT-GT-TTCAAA-A-T-ACGAAT-AAAATGT-TCACGCCTG-AA-TG-TTCA-AATATC--AAATATAA-AT-TAAAtgaaagagaatgttattaattaataaaatcaaaactaacaaacaggtgtttgtgtgattgacattaagact
gi|8 : -AAGTAA--AGAAAC-T-C-GA-TCATCATAGAAGT--TGT--T-C--C-TTG--AA---A-----A----ATATACTCCTCA----CAAAC-TAATGATCAAT-AACCTGAATAAACATCAT-TTCAATAA-C-CCGAATAAAAATATTTAGCTACTG-AA-TGAATCAAAAC-CC--AAATG-AA-TT-TAAAATTAAAcatatggataaactgatggagtattaatgttttacc
gi|9 : aactTCAC-AAGTAA--AGTAAC-T-C-GT-TCGTTATAGTAGT--CGT--T-C--C-T----AA---A-----A-T-TATATACTCTTCA----TGACC-TAATGATGAAT-AATCCGAATAAAAAT-GT-TTCAAT-A-C-CCGAAT-AAAATGTCTCACGACTG-AA-TGATTCATAGC-TC--AAATG-AA-AT-TAAAATTAAATcgga