lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 1111 111 1111 11111111 1111 11 1 11111111 1 2222222 1111111111 1111 1111 111 111 1 222222 22222222222222 11111 1111 11 111111 4444444444444444 11 111111 33333333333333333333 222222222222222 11111 2222222222 111 111 11111 33333333333 444444444444444444444 11 11 11 333333 2222222 33333 22222222 111 77777777777777777777777777777 333333333 11 11 11 11111 1 11 222 1 22 111 1 1 444 1 1 1 1 1 4444444444 1 3333333 1 1 1 77777777777777777 1 1 1 333333333 1 444444444 1 7777777777777777777777777777777777777777777777777777777777777777 1 11 3333 1 111 111 22222 1111 444444444444444 22222 11 1 1 1 1 1 11 11 1 11 111 333 111 22 1 1 8888888 444444 1 1 1 222222222 1 999999999999999999999999999999999999999999999999 11 1 3333333333 1 1111 1 1 111 1 1 11 11 11 11 111 444444444 2222 1 2222 1 22222222 11 2222 222
lowQualScore : 88 0 111 6 0 7777 8 0 8 444 5555 33333333 5 5 5555 88 3 1 8888 77 4 44444444 4 2 4 4 55 1111111 4 3333333333 4 55 5555 4 4 8 4 8888 111 666 8888 2 777 2 8888 4 444444 4 66666666666666 66 11111 4 4 4 3333 11 5 5 5 4 999999 9999999999999999 888 2 8888 5 5 11 3 777777 9999 66 66666666666666666666 66 4 1 4 8 4 4 8 777 4 4 4 888888888888888 4 4 4 777 1 0 00000 5 777 5 5 0000000000 66 66 5 5 5 000 5 000 44444 77 11111111111 5 000000000000000000000 33 1 5 77 5 77 5 33 99 444444 4444444 33333 00000000 2 000 66666666666666666666666666666 77 0 8 333333333 1 11 99 11 0 9 88888 6 0 0 11 666 0 00 6 444 0 0 888 0 0 0 0 0 66 0000000000 7 3 8888888 3 3 3 44444444444444444 5 3 3 333333333 3 000000000 3 7 6666666666666666666666666666666666666666666666666666666666666666 0 33 3333 0 777 888 0 8 6 33333 6 4444 111111111111111 4 55555 33 0 0 0 0 0 0 0 0 33 33 5 3 3 88 777 555 666 77 3 3 2222222 000000 7 3 7 3 3 444444444 3 777777777777777777777777777777777777777777777777 88 2 5555555555 6 6 3 2222 3 0 3 0 777 3 3 0 3 0 33 3 33 22 3 33 111 000000000 2 1111 0 1111 0 44444444 6 55 8888 7 444
lowQualScore : .. . ... . . .... . . . ... .... ........ . . .... .. . . .... .. . ........ . . . . .. ....... . .......... . .. .... . . . . .... ... ... .... . ... . .... . ...... . .............. .. ..... . . . .... .. . . . . ...... ................ ... . .... . . .. . ...... .... .. .................... .. . . . . . . . ... . . . ............... . . . ... . . ..... . ... . . .......... .. .. . . . ... . ... ..... .. ........... . ..................... .. . . .. . .. . .. .. ...... ....... ..... ........ . ... ............................. .. . . ......... . .. .. .. . . ..... . . . .. ... . .. . ... . . ... . . . . . .. .......... . . ....... . . . ................. . . . ......... . ......... . . ................................................................ . .. .... . ... ... . . . ..... . .... ............... . ..... .. . . . . . . . . .. .. . . . .. ... ... ... .. . . ....... ...... . . . . . ......... . ................................................ .. . .......... . . . .... . . . . ... . . . . . .. . .. .. . .. ... ......... . .... . .... . ........ . .. .... . ...
lowQualScore : 88 8 888 0 8 0000 0 8 0 000 6666 66666666 7 7 6666 44 0 4 5555 44 0 55555555 0 0 0 0 55 0000000 0 2222222222 0 55 4444 0 0 0 0 0000 000 555 5555 0 000 5 5555 4 111111 4 11111111111111 11 11111 4 4 4 9999 99 0 0 0 1 444444 0000000000000000 888 8 9999 0 0 99 2 555555 4444 11 11111111111111111111 11 4 1 4 9 4 4 9 888 4 4 4 222222222222222 4 4 4 888 0 1 22222 0 111 0 0 2222222222 99 99 0 0 0 000 7 000 33333 99 66666666666 7 000000000000000000000 99 4 7 99 7 99 7 66 33 444444 3333333 66666 77777777 3 000 77777777777777777777777777777 99 8 0 222222222 4 22 00 00 8 6 44444 0 8 8 00 000 0 77 7 000 0 0 888 0 0 0 0 0 22 0000000000 3 3 3333333 3 3 3 00000000000000000 3 3 3 333333333 3 333333333 3 3 6666666666666666666666666666666666666666666666666666666666666666 0 88 8888 0 555 555 8 0 7 33333 7 2222 777777777777777 0 88888 22 8 8 8 0 0 0 0 0 88 22 5 2 2 88 555 000 222 55 3 3 0000000 000000 3 3 3 3 3 777777777 3 777777777777777777777777777777777777777777777777 33 0 0000000000 0 7 3 8888 2 0 2 0 000 2 2 0 2 0 88 2 88 55 2 88 000 000000000 0 2222 0 2222 0 00000000 0 77 3333 3 333
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAAAGTTGCA----TTATCAAC-AGAATGCTTG-T---CG--C-CA---GG-C-TCT-ACTTGA-TAA-AT-ACT-TCGTA-TT----TAT-AAA-GTTGT--------CGTA-GCAGTTTTCAA-T-T-CAA--A-------TG-T--A------AC-TCTAC--TTA---TGATT-TC-A-T-CGC----GA---AAAAC-CC----TTTAG-A---AACCGAT----AATT-TAT--AA--AAT-ATATA--------------CAAGAAA-A-----CCC-AC-CA-A----TTT--CG-T-CT-AAATGTGCATG------TCGCC-GAAG-CGGG--TATACA---ACAT---TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTC-AC-----A--ACCTGT-G-TAT-TGA---TGGATATCT---TA-AAAACA-G-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TT---ACTCG-----AT--GTCGC---C-A----AGAAG-TG--------C------------GTAATC-AACGTT-AT--C-AAAC--ATGAA-T--GCGTC--TTTATA---AATCTT-----G-AATACTCT----TTTTTTCCAC--------TAT---TAATATT--A--------------------------AA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCA--TATACACGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAA-CGGGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-C-AAATTTTC-AG-TAAA-TG-TATAT-GTAGANTTGTGTATA-CTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT-NTCC---GGC------AAA-CAGATT-CAT-TTCCC--A-ATACAAAAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG--CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-CAAG-----TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTNTGATGGT---CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTCCC-AAAGTC--AAAAAAGAAACAATCCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGTGGG-----TGTTT-ATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAG-TTACGTTATTAA-CA--TGATTTATCA-ATCACTGTCAC-TTGATGA--TTATTTTTC--GA-NATGGTTT--GTTTC-T-AGA---------ATCGACTTA----G-GTATCA----TTTACTTA-CT----GC-TACATCTGTCCATTAA----AATTATGCTC-ACCTACGATTAACAGAA
Reference ( gi|2 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTG-T---CG--C-CA---GG-C-TCT-ACTTGA-TAA-AT-ACT-TCGTA-TT----TAT-AAA-GTTGT--------CGTA-GCAGTTTTCAA-T-T-CAA--A-------TG-T--A------GC-TCTAC--TTA---CGATT-TC-A-T-CGC----GA---AAAAT-TC----TTTAG-A---AACCGAT----AATT-TAT--TA--AAT-ATATA--------------CAAGAAG-A-----CCC-AC-CA-A----TTT--CG-T-CT-AAATATGCATG------TCGCCAGAAG-T-G---TAT-CA---ATAT---TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTCAAC-----A--ACC-GT-G-TAT-TGA---TAGATATCT---TA-AAAACA-G-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TT---ACTTG-----AT--GTCG----C-A----AGAAG-TG--------C------------GTAATA-AACGTT-AT--C-AAAC--ATGAA-T--GCGTC--TTTATA---AATCTT-----G-AATACTC-----TTTTTTCCAC--------TAT---TAATATT--T--------------------------AA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCA--TATACTCGA----GACAG-AAAATATCTAATTAGTGCATCCA--TCAA-AAGGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-C-AA---TTC-AG-TAAA-TG-TATAT-GTAGATTGGTGTATA-ATATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT-CT-----AGC------AAAACAGATT-CAT-TTCCC--A-AAAATAAAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG--C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-CAAG-----TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATGAT---CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC---AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGTGGG-----TGTTT-ATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAG-TTACGTTATTAA-CA--TGATTTATCA-ATCACTGTCAC-TTGATGA--TTATTTTTC--GA-GATGGTTT--GTTTC-T-AGA---------ATCGACTCA----G-GTATCA----TTTACTTA-CT----GC-GACGTCTGTTGATTAA----AATTATGCTC-A-CTACGATTAACAGAA
gi|5 : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTG-T---CG--C-CA---G----CCT-ACTTGA-TAATAT-AC--TCGTA-TT----TATAAAA-GTTGT--------CGTA-GCAGTTTTCAA-T-T-C-A--A-------TG-T--A------GC-TCTAC--TTA---CGATT-TC-A-T-CGC----GA---AAAAT-TC----TTTAGAA---AACCGAT-----ATT-TAT--TA--AAT-ATATA--------------CAAGAAG-A-----CCC-AC-CA-A----TTT--CG-T-CT-AAATATGCATG------TCGCC-GAAG-TGG---TATACA---ATA----TTCC-GC-G--TTTGT-AA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTC-AC-----A--ACCTGTGG-TAT-TGA---TAGATAT-T---TA-AAAACA-G-AT-ATC-AAGAT--ATA-A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TT---ACTTG-----AT--GTCG----C-A----AGAAG-TG--------C------------GTAATA-AACG-T-AT--C-AAAC--ATGAA-T--GCGTT--TTTAT----AATCTT-----G-AATACTC-----TTTTTTCCAC--------TAT---TAATATT--A--------------------------AA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCA--TATACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAA-AAGGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA---TTC-AG-TAAA-TG-TATAT-GTAGAGTTGTGT
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT---CG--CTCA---GGCC-TCTAACTTGA-TAA-ATGACTGTCGTATTT----TAT-AAA--TTGT--------TGTAGGCTATTTTCAATT-T-CAA--A-------TG-T--A------AC-TC-AC--TTA---TGATT-TC-ATT-CGC----GA---AAAAC-CC----TTTAGAA---AACCGA-----AATT-TAT--AC--AATAATA-A--------------CGAAAAGAA-----CCC-AC-CA-A----CTTTGCG-T-CTAAAATGTGCATG------CC-CC-GAAG-C-GGC-TATACA---ATAG---TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-A---TT-C-TGTTC-AC-----A--CCT-GT-G-TAT-GAA---TGGATACTT---TAGAAAACA-GTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-tatt
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTG-T---CT--T-CA---AG-CTTCT-ACTTGA-TAATAT-ACCGTGGTA-CT----TAT-AAAGGTTGT--------CATA-GCTAATTTCAATT-T-CAA--A-------TG-TA-A------AC-TCT-T--TTA---TGATT-TC-A-T-CAC----GA---AAAA---C----TTTGG-A---AA-CGAT----AATT-TAT--AA--AAT-AT-TA--------------CAAAAAG-AGAAACCTC-AT-AA-AT---TTT--CG-T-CT-AAATGTGCATGTTTTTTTCGCC-GAAG-C-GTAATAT-CAAATATAT---TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATCCTC-C-T-CTCCAC-----AACACT-GT-G-TAT-TGA---TAGGC-----------AAAT-----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTT---ACTTG-----AT--GTAGC---C-A----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC--TTT-TAAAGAATCTT-------AATACTCTTTTTTTTTTTCCAG--------TGTACACAATATC--T--------------------------AC--AAAt
gi|1 : aatttgcattcattcctcacccagaaatACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTG-T---CG--C-CA---GG-C-TCT-ACTTGA-TAA-AT-ACT-TTGTA-TT----TAT-AAA-GTTGT--------CGTA-GCAGTTTTCAA-T-T-CAA--A-------TG-T--A------AC-TCTAC--TTAATATGATT-TC-A-T-CCC----GA---AAAAC-CC----TTTAG-A---AACCGAT----AATT-TAT--AA--AAT-ATATA--------------CAAGAAA-A-----CCC-AC-CA-A----TTT--CG-T-CT-AAATGTGCATG------TCGCC-GAAG-C-GG--TATACA---ATAT---TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTCA-C-----A--GCCTGT-A-TAT-TGA---TGGATATCT---TA-AAAACA-A-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TT---ACTTG-----AT--GTCG----CCA----AGAAG-TG--------C------------GTAATC-AACGTT-AT--C-AAAC--ATGAA-T--GCGTC--TTT-TAT--AATCTT-----G-AATACTCC----TTTTTTCCAC--------TGT---TAATATT--TNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCA--TATACACGA----GACAG-AAAATATCTAATTAGTGCATCCA--TCAA-C-GGGT-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-C-AAAT-TTC-AG-TAAAATG-TATAT-GTAGAGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTTTCT-----AGC------AAA-CAGATT-TAT-TTCCC--A-ATACAAAAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG--CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-CAAG-----TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATGGT---CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTTC---AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT------TTTCAGGTTAGAAGTGG------TGTTT-ATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAG-TTACGT-ATTAA-CA--TGATT-A-CA-ATCACTGTCACTTTGATGA--TTA-TTTTC--GA-CATGG-TT--GTTTC-TAAGA---------ATTAACTTA----G-GGATCA----TTTACTTA-CT----GC-TACATCTGTCCATTAA----AATTG-GCTT-ACCTACGATTAACAGAtaa
gi|4 : CCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-G-TAAACGGACACAAAAGG-C-TC--ACTTGA-TAA-A--ACT-TCGTA-TCATAATAA-AAA-GATGTAAAAACCACGTA-GCAGTTT-CAA-TATACAA--AAAAATGATG----A------GCATCTAC--TTAA--TGATT-TC-AAT-CGCTCAAAAT--AAAAT-TCCTCCTTTAG-AGGGAACCGATTATAAATTGTAT---A--AAT-A-ATA--------------CAAGAAA-A-----CCCCAC-CA-A----TTT--CG-T-CT-AAATGTG-ATG------TCGCCGATAGCT-GGT-TAA-CA---A-AT---TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGA---TT-TGT-TTCACCGCATTA--ACCTGT-GTTAT-TGATTTTAGATATCTTTGTA-AAAACA-G-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TTCTGACGTGGGGGAGTGGGTCGGGGCC-AGAAGAGACG-TGGCTCCGGTC------------GTAATC-AAC--T-AT--C-ACATCAATGAATT--GC-TCCTTTTAT----AATCTTAATCGG-AAGACTC-----TTTTTTCCACTTATTTAATAT---TAATATT--A--------------------------AATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCAATTA-ACCCAACCCGGACAG-AAAA-ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|11 : caatgttaaacttaccagcac-CA---AG-T-TCT-ACTTGAATAA-ATTACG-TGGTA-CT----TAT-AAA-GTTGT--------CATA-GCAGTTTTCAA-T-T-CCA--AT------TG-TAAA------AC-TCTTT--TTA---TGATTGTC-A-TACAC----GAAAGAAAAC-CC----TTTTG-A---AACTGAT----AATT-TAT--AAT-AAT-ATAGAAAAAAAAAAAAAACCAAAAAA-A-----ACC-TC-AA-AATTTTTT--CG-T-CT-AAATGT-CATGT-----TCGCC-GAAG-CGG---TAT-AA---ACATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-A---TT-C-T-TTTCAC-----AT-ACC-TT-G-TTTATGA---TGG
gi|13 : ctt-CA---AG-T-TCT-ACTGGA-TAA-TT-ACG-TGGTACTT----TA--AAA-GTTGT--------CATA-GCAGTTTTCAA-G-T-TAAGGA-------TG-T--AACCTACGC-TCTATAATAG---TGATT-TC-A-T-CACGA--GA---AAAAC-CC----TTTGGAA---AACTGAT----GAAG-TATTCTAATAAG-AGATA--------------C--TAAT-A-----CCC-AC-AA-A----caaataatcagtccatttatcgtttagttct
gi|3 : ttT----TA--AAA-GTTGT--------GTTA-GCAGTTTTTAAAT-T-CAA--AA------TGCT--A------AC-TCTAC--TTA---TGATT-TCTA-T-CGC----AA---AAAAAACC----TTTAG-A---AAACGAT----AATT-TAT--AA--AAT-ATATA--------------CAAGAAA-A-----CCC-AC-CA-A----TTT--CG-TTCT-AAATGTGCATG------TCGCC-GAAG-C-GG--TATACA---ACAT---TTCCAGC-G--TT-GTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTC-AC-----A--ACCTGT-G-TAT-GGG---TGGATATCT---TA-AAAACA-G-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TT---TCTCG-----AT--GTCGC---C-A----AGAAG-TG--------C------------GTAATC-AACGTTAAT--CAAAAC--ATGAA-T--GCGTCT-TTTTTA---TATCTT-----T-AATACTCTT---TTTTTTCCAC--------TAT---TAATATT--A--------------------------AA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCA--TATACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAA-CGGGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGC-AAATTTTCAAG-TAAA-AG-TTTGT-GTATATT----------TATTTCGT-ATCCTAT--C----TATGT-AGAG-TAT-TTT-TTCTTAAGGC------CAAACAGATTCCAT-TTCCC--A-ATACAAAAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTGC-C-ATAGTT---ATTCG-TAAACATTAA-ACAAATCAAGT----TG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATGA----CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACA-TTTTCCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGA-----AATTTTCAGGTTAGAAGTGGG-----TG-TT-ATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------aaaagaaagaaagaaaaa
gi|7 : ta----TAT-AAA-GTTGT--------CGTA-GCAGTTTTTAA-T-T-CAA--A-------TG-T--A------AC-TCTAC--TTA---TGATT-TC-A-T-CGCA---AA---AAAAA-CC----TTTAG-A---AA-CGAT----AATT-TAT--AA--AAT-ATATA--------------CAAGAAA-A-----CCC-ACGCATA----TTTC-CGTT-CT-TAATGTGCATG------TCGCC-GAAG-CGG---TATACA---ACAT---TTCC-GC-G---TTGTAAA-AAC--CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-A---TT-C-T-TTC-AC-----A--ACCTGT-G-TAT-GGG---TGGATATCT---TA-AAAACAGG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TT---TCTCG-----AT--GTCGC---C-A----AGAAG-TG--------C------------GTAATC-AACGTT-AT--C-AAAC--ATGAA-T--GCGTCT-TTTAT----AATCTT-----T-AATACTCT----TTTTTTCCAC--------TAT---TAATATTAAA--------------------------AA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCA--TATACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Ttcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|16 : ----TAT-AAA-GTTGT--------CGTA-GCAGTTTTCAA-T-T-CAT--A-------TG-T--A------AC-TCTAC--TTA---TGATT-TT-A-T-CGC----AA---AAAAC-CC----TTTAG-A---AACCGAT----AAT
gi|12 : ---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTA---TTTC-T-TTCACA-----A--ACT-GT-G-TAT-TGA---TGG----------------CA-A-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TT---ACTTG-----AT--GTCG----C-C----AGAAGATG--------CCCCCCCAACGAGGTAATC-A--GTT-AT--C--AAT--ATGAA-TG-GCGTC--TTTA-A---AATCTT-----GTAATACT------TTTTTTCCAC--------T-T---T-ATATT--A--------------------------AA--ATAAT
gi|8 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatgA-A-GGACA-C-AAAATTTC-AGATAAA-TGATATATAGTAG-TTG-TGTATA-TTATT-CATCAACCTATAACGATACATGTTAGAGGTATGTTT-ATTC---AGCTATTTTAAACTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACC-AT-GTTGTGATTCGTTAAACATTAA-ACAAA-CAAG-----TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-T-TTTCTTTAAGGTC--Atcccactgt
gi|17 : tttTT------------ATGT--------------A-------------AT-------TTA-C--GTTG--CCAT-GTT---GTTCG-TAAACATTAA-ACAAA-CAAGTCAAGTG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|20 : tacgTAATACAAA-CAAG-----TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|18 : cgaA-CAAG-----TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATGGT---CA-TTGGTAACGTTTTA
gi|14 : TGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-A-TTTC---AAAGTC--AAAA
gi|9 : TACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
gi|3 : ----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-G-TTACGTTATTAA-CAGATGATTTATCA-ATCACTGTCAC-TTGATGA--TATTTTTTC--GA-GATGGTTT--GTTTC-T-AGA---------ATCGACTCA----G-GTATCA----TTTACTTA-CT----GC-TACATCTGTCCATTAA----AATTATGCTCAA-CTACGATTAACAGAAtttagtcgaattgtaaattttccataattgttcttatctctccaaatgtaacattgcatttctaatgtcctctttgattagtgggtgtgtaggccagttggtacggccgtttattttaagcttatatttttaatcaatttatcttgtttctatcttgatgaatttattttttctgatgatggtttttgtttcttagatatattcgtatcgctttattttgtttatcatttttttacttatcttttcgctaacatctgcggattaaatttaattatgttc
gi|19 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaag----------AACATGCATCATGTCCTC-TTGATGT----AAG-TTACGTTATTAA-CA--TGATTTATC
gi|9 : gTATTTT-AAGCTTATATTTTTAATCA----ATTTATCTTGTTTCTATC---TTGATGAATTTATTTTTTCTGATGATGGTTTTTGTTTCTT-AGATATATTCGTATCGCTTTATTTTGTTTATCATTTTTTTACTTATCTTTTCGCTAACATCTGCGGATTAAATTTAATTATGTTC-
gi|15 : tacacatcctttattggaatttttcaggttagaagtggggtgtttgttttatcctattaaagacggaacccttgaatgaaaagccactgttctatataactttaagtattcctcttttagtcgaattgtaaattttccataattgttcttatctctccaaatgtaacattgcatttctaatgtcctctttgattagtgggtgtgtaggccagttggtacggccgttCA-ATCACTGTCAC-TTGATGA--TTATTTTTC--GA-CATGGTTT--GTTTC-T-AGA---------ATCAACTTA----G-GTATCA----TTTACTTA-CT----GC-TACATCTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 2 1111 111 1111 1 1111 1 11111111 1111111111 222222 2222222222 1111 22222222222222 1111 111111 222 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 2222222 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 22 1 2222222 1 1 1 55555555555555555 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 111 44444 11 333 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 1
lowQualScore : 6 99 3 4444 6 888 1111 888 0 5 5 1111 0 1 5 7777 3 2 7 33333333 3 7 3 7 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 4 4 4 222222 4 4 4 111 1 777 4 777 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 5 4444444 3 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 3 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 3 44 3 0 3333333 0 0 0 00000000000000000 0 0 0 0 0 33 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 222 00000 11 111 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 5
lowQualScore : . .. . .... . ... .... ... . . . .... . . . .... . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . . ...... . . . ... . ... . ... . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. . ....... . ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . .. . . ....... . . . ................. . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. ... ..... .. ... . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . .
lowQualScore : 7 22 7 2222 7 333 8888 888 0 0 0 4444 0 4 0 7777 6 3 3 22222222 6 3 6 3 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 4 4 4 888888 4 4 4 333 9 888 4 888 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 0 5555555 2 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 7 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 22 2 0 8888888 0 0 0 88888888888888888 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 0 22222 88 0 0 0 0 0 00 88 6 8 8 00 222 66666 00 333 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 0
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-TCTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-GTTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-G-T-CT-AAATGTGCATG------T-CGCC-GA-AGCG-G-TATACA---ATAT---TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTTNTCT---AG-C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC--C-AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCA-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAAAGTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-TCTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-GTTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-G-T-CT-AAATGTGCATG------T-CGCC-GA-AGCG-GGTATACA---ACAT---TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACACGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-ANTTGTGTATA-CTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTTNTCC---GG-C------AAA-C-AGATT-CAT-TTCCC-AATACAA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTNTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC-CC-AAAGTC--AAAAAAGAAACAATCCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTTAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCACCTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-TCTA-CTTGA-TAA-AT-ACT-TTGTA-TT----T-ATAAA-GTTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-G-T-CT-AAATGTGCATG------T-CGCC-GA-AGCG-G-TATACA---ATAT---TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTATA---A-TCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT-TCT---AG-C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTTC----AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTTACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCTCTAACTTGA-TAA-ATGACTGTCGTA-TT----TTATAAA--TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-G-T-CTAAAATGTGCATG------C-C-CC-GA-AGCG-GCTATACA---ATAG---TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-TCTA-CTTGAATAA-ATTACG-TGGTA-CT----T-ATAAA-GTTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-G-T-CT-AAATGT-CATG------TTCGCC-GA-AGCG-G-TATA-A---ACATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC-TTT-A-A---AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-TCTA-CTGGA-TAA-TT-ACG-TGGTACTT----T-A-AAA-GTTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-A-TTT---C-AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-GTTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-TCTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-GTTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-G-T-CT-AAATATGCATG------T-CGCCAGA-AGTG---TAT-CA---ATAT---TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATA-ATATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTTCT-----AG-C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTCA-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-GTTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTT-CT-AAATGTGCATG------T-CGCC-GA-AGC--GGTATACA---ACAT---TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTT-TTA---TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TAT-TTTTTCTTAAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACA-TTTT-CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAACTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-TC-A-CTTGA-TAA-A--ACT-TCGTA-TCATAAT-AAAAA-GATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-G-T-CT-AAATGTG-ATG------T-CGCC-GATAGCT-GGTTAACA---A-AT---TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GCTCC-TTT--TAT--AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---CCTA-CTTGA-TAATAT-ACT--CGTA-TT----T-ATAAAAGTTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-G-T-CT-AAATATGCATG------T-CGCC-GA-AGTG-G-TATACA---ATAT---T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGTT-TTT-ATA---A-TCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGCTTCTA-CTTGA-TAATAT-ACCGTGGTA-CT----T-ATAAAGGTTGT--------CATAG-CTAATTTCAATT-T-CAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-G-T-CT-AAATGTGCATGTTTTTTT-CGCC-GA-AGCGTAATAT-CAAATATAT---TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTT--TAAAGAATCTT-------AATACTC-TTTTTTTtatt
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-GTTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCG-TTCT-TAATGTGCATG------T-CGCC-GA-AGCG-G-TATACA---ACAT---TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT--TAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATA-TTATT-CATCAACCTATAACGATACATGTTAGAGGTATGTTTATTC---AG-CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-T-TTTCTTT-AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 1111 1111 1 11111111 1 1111111111 222222 2222222222 1111 22222222222222 1111 111111 111 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 2222222 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 1 1 2222222 1 1 1 33333333333333333 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 333333 11 11 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 111
lowQualScore : 6 99 3 4444 6 888 1111 888 5 5 5 5 1111 0 1 5 7777 3 2 3 3 33333333 3 3 3 0 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 8 4 777777 4 4 4 4 4 222 4 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 5 4444444 3 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 1 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 0 5 3 0 3333333 0 0 0 33333333333333333 0 0 0 0 0 66 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 8 111111 11 88 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 777
lowQualScore : . .. . .... . ... .... ... . . . . .... . . . .... . . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . ...... . . . . . ... . . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. . ....... . ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . . . . ....... . . . ................. . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. . ...... .. .. . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . ...
lowQualScore : 7 22 3 2222 7 333 8888 888 0 0 0 0 4444 0 4 0 7777 6 3 6 6 22222222 6 6 6 9 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 9 4 222222 4 4 4 4 4 222 4 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 0 5555555 2 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 0 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 5 2 0 8888888 0 0 0 55555555555555555 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 4 22222 88 0 0 0 0 0 00 88 6 8 8 00 0 666666 00 33 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 777
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT-TCT--AG--C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTTNTCT--AG--C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TTGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTATA---A-TCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT-TCT--AG--C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTT--C--AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTT-ACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCT-CTAACTTGA-TAA-ATGACTGTCGTA-TT----TTATAAA---TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-GT-CTAAAATGTGCATG------CC-CC-GA-AGC-GGCTATA-CA---ATAG-TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-T-CTA-CTTGAATAA-ATTACG-TGGTA-CT----T-ATAAA-G-TTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-GT-CT-AAATGT-CATGT-----TCGCC-GA-AGC-GG-TATA-AAC--ATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC-TTT-A-A---AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-T-CTA-CTGGA-TAA-TT-ACG-TGGTACTT----T-A-AAA-G-TTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-ATTT---C--AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCCAGA-AGT-G--TAT--CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATAAT-ATTTCGT-ATCCTAT--CG---TATGT-AGAG-TAT-TTT--CT--AG--C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC-----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-G-TTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTTCT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTT-TTA---TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TAT-TTTTTCTTAAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACATTTT--CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAA-CTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-T-C-A-CTTGA-TAA-A--ACT-TCGTA-TCATAAT-AAAAA-G-ATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-GT-CT-AAATGTG-ATG------TCGCC-GATAGCTGG-TTAA-CA---A-AT-TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GCTCC-TTT--TAT--AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---C-CTA-CTTGA-TAATAT-ACT--CGTA-TT----T-ATAAAAG-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCC-GA-AGT-GG-TATA-CA---ATAT-T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGTT-TTT-ATA---A-TCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT-TATT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGC-TTCTA-CTTGA-TAATAT-ACCGTGGTA-CT----T-ATAAA-GGTTGT--------CATAG-CTAATTTCAA-T-TTCAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-GT-CT-AAATGTGCATGTTTTTTTCGCC-GA-AGC-GT-AATATCAAATATAT-TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTT--TAAAGAATCTT-------AATACTC-TTTTTTT
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCGTTCT-TAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT--TAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATATT-ATT-CATCAACCTATAACGATACATGTTAGAGGTATGTTTATTC--AG--CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-TTTTCTTT--AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 1111 1111 1 11111111 1 1111111111 222222 2222222222 1111 22222222222222 1111 111111 111 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 2222222 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 1 1 2222222 1 1 1 4444444444444 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 333333 11 11 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 111
lowQualScore : 6 99 3 4444 6 888 1111 888 5 5 5 5 1111 0 1 5 7777 3 2 3 3 33333333 3 3 3 0 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 8 4 777777 4 4 4 4 4 222 4 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 5 4444444 3 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 1 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 0 5 3 0 3333333 0 0 0 3 1111111111111 0 0 0 0 0 66 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 8 111111 11 88 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 777
lowQualScore : . .. . .... . ... .... ... . . . . .... . . . .... . . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . ...... . . . . . ... . . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. . ....... . ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . . . . ....... . . . . ............. . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. . ...... .. .. . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . ...
lowQualScore : 7 22 3 2222 7 333 8888 888 0 0 0 0 4444 0 4 0 7777 6 3 6 6 22222222 6 6 6 9 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 9 4 222222 4 4 4 4 4 222 4 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 0 5555555 2 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 0 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 5 2 0 8888888 0 0 0 2 0000000000000 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 4 22222 88 0 0 0 0 0 00 88 6 8 8 00 0 666666 00 33 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 777
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG--C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCT--AG--C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TTGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTATA---A-TCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCT--AG--C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTT--C--AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTT-ACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCT-CTAACTTGA-TAA-ATGACTGTCGTA-TT----TTATAAA---TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-GT-CTAAAATGTGCATG------CC-CC-GA-AGC-GGCTATA-CA---ATAG-TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-T-CTA-CTTGAATAA-ATTACG-TGGTA-CT----T-ATAAA-G-TTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-GT-CT-AAATGT-CATGT-----TCGCC-GA-AGC-GG-TATA-AAC--ATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC-TTT-A-A---AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-T-CTA-CTGGA-TAA-TT-ACG-TGGTACTT----T-A-AAA-G-TTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-ATTT---C--AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCCAGA-AGT-G--TAT--CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATAAT-ATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTT-CT--AG--C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC-----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-G-TTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTTCT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTT-TTA---TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TATTTTTTCTTAAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACATTTT--CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAA-CTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-T-C-A-CTTGA-TAA-A--ACT-TCGTA-TCATAAT-AAAAA-G-ATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-GT-CT-AAATGTG-ATG------TCGCC-GATAGCTGG-TTAA-CA---A-AT-TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GCTCC-TTT--TAT--AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---C-CTA-CTTGA-TAATAT-ACT--CGTA-TT----T-ATAAAAG-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCC-GA-AGT-GG-TATA-CA---ATAT-T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGTT-TTT-ATA---A-TCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT-TATT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGC-TTCTA-CTTGA-TAATAT-ACCGTGGTA-CT----T-ATAAA-GGTTGT--------CATAG-CTAATTTCAA-T-TTCAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-GT-CT-AAATGTGCATGTTTTTTTCGCC-GA-AGC-GT-AATATCAAATATAT-TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTT--TAAAGAATCTT-------AATACTC-TTTTTTT
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCGTTCT-TAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT--TAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATATT-ATT-CATCAACCTATAACGATACATGTTAGAGGTA-TGTTTATTCAG--CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-TTTTCTTT--AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 1111 1111 1 11111111 1 1111111111 222222 2222222222 1111 22222222222222 1111 111111 111 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 2222222 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 1 1 2222222 1 1 1 4444444444444444 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 333333 11 11 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 111
lowQualScore : 6 99 3 4444 6 888 1111 888 5 5 5 5 1111 0 1 5 7777 3 2 3 3 33333333 3 3 3 0 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 8 4 777777 4 4 4 4 4 222 4 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 5 4444444 3 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 1 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 0 5 3 0 3333333 0 0 0 0000000000000000 0 0 0 0 0 66 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 8 111111 11 88 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 777
lowQualScore : . .. . .... . ... .... ... . . . . .... . . . .... . . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . ...... . . . . . ... . . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. . ....... . ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . . . . ....... . . . ................ . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. . ...... .. .. . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . ...
lowQualScore : 7 22 3 2222 7 333 8888 888 0 0 0 0 4444 0 4 0 7777 6 3 6 6 22222222 6 6 6 9 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 9 4 222222 4 4 4 4 4 222 4 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 0 5555555 2 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 0 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 5 2 0 8888888 0 0 0 2222222222222222 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 4 22222 88 0 0 0 0 0 00 88 6 8 8 00 0 666666 00 33 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 777
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TTGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTATA---A-TCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCT--AG---C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTT--C--AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTT-ACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCT-CTAACTTGA-TAA-ATGACTGTCGTA-TT----TTATAAA---TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-GT-CTAAAATGTGCATG------CC-CC-GA-AGC-GGCTATA-CA---ATAG-TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-T-CTA-CTTGAATAA-ATTACG-TGGTA-CT----T-ATAAA-G-TTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-GT-CT-AAATGT-CATGT-----TCGCC-GA-AGC-GG-TATA-AAC--ATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC-TTT-A-A---AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-T-CTA-CTGGA-TAA-TT-ACG-TGGTACTT----T-A-AAA-G-TTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-ATTT---C--AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCCAGA-AGT-G--TAT--CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATAAT-ATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTC--T-AG---C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC-----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-G-TTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTTCT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTT-TTA---TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TATTTTTTCTT-AAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACATTTT--CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAA-CTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-T-C-A-CTTGA-TAA-A--ACT-TCGTA-TCATAAT-AAAAA-G-ATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-GT-CT-AAATGTG-ATG------TCGCC-GATAGCTGG-TTAA-CA---A-AT-TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GCTCC-TTT--TAT--AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---C-CTA-CTTGA-TAATAT-ACT--CGTA-TT----T-ATAAAAG-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCC-GA-AGT-GG-TATA-CA---ATAT-T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGTT-TTT-ATA---A-TCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT-TATT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGC-TTCTA-CTTGA-TAATAT-ACCGTGGTA-CT----T-ATAAA-GGTTGT--------CATAG-CTAATTTCAA-T-TTCAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-GT-CT-AAATGTGCATGTTTTTTTCGCC-GA-AGC-GT-AATATCAAATATAT-TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTT--TAAAGAATCTT-------AATACTC-TTTTTTT
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCGTTCT-TAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT--TAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATATT-ATT-CATCAACCTATAACGATACATGTTAGAGGTA-TGTTTATTCAG---CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-TTTTCTTT--AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 1111 1111 1 11111111 1 1111111111 222222 2222222222 1111 22222222222222 1111 111111 111 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 2222222 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 1 1 2222222 1 1 1 4444444444444444 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 333333 11 11 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 111
lowQualScore : 6 99 3 4444 6 888 1111 888 5 5 5 5 1111 0 1 5 7777 3 2 3 3 33333333 3 3 3 0 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 8 4 777777 4 4 4 4 4 222 4 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 5 4444444 3 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 1 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 0 5 3 0 3333333 0 0 0 0000000000000000 0 0 0 0 0 66 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 8 111111 11 88 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 777
lowQualScore : . .. . .... . ... .... ... . . . . .... . . . .... . . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . ...... . . . . . ... . . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. . ....... . ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . . . . ....... . . . ................ . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. . ...... .. .. . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . ...
lowQualScore : 7 22 3 2222 7 333 8888 888 0 0 0 0 4444 0 4 0 7777 6 3 6 6 22222222 6 6 6 9 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 9 4 222222 4 4 4 4 4 222 4 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 0 5555555 2 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 0 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 5 2 0 8888888 0 0 0 2222222222222222 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 4 22222 88 0 0 0 0 0 00 88 6 8 8 00 0 666666 00 33 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 777
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TTGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTATA---A-TCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCT--AG---C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTT--C--AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTT-ACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCT-CTAACTTGA-TAA-ATGACTGTCGTA-TT----TTATAAA---TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-GT-CTAAAATGTGCATG------CC-CC-GA-AGC-GGCTATA-CA---ATAG-TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-T-CTA-CTTGAATAA-ATTACG-TGGTA-CT----T-ATAAA-G-TTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-GT-CT-AAATGT-CATGT-----TCGCC-GA-AGC-GG-TATA-AAC--ATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC-TTT-A-A---AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-T-CTA-CTGGA-TAA-TT-ACG-TGGTACTT----T-A-AAA-G-TTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-ATTT---C--AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCCAGA-AGT-G--TAT--CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATAAT-ATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTC--T-AG---C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC-----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-G-TTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTTCT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTT-TTA---TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TATTTTTTCTT-AAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACATTTT--CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAA-CTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-T-C-A-CTTGA-TAA-A--ACT-TCGTA-TCATAAT-AAAAA-G-ATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-GT-CT-AAATGTG-ATG------TCGCC-GATAGCTGG-TTAA-CA---A-AT-TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GCTCC-TTT--TAT--AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---C-CTA-CTTGA-TAATAT-ACT--CGTA-TT----T-ATAAAAG-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCC-GA-AGT-GG-TATA-CA---ATAT-T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGTT-TTT-ATA---A-TCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT-TATT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGC-TTCTA-CTTGA-TAATAT-ACCGTGGTA-CT----T-ATAAA-GGTTGT--------CATAG-CTAATTTCAA-T-TTCAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-GT-CT-AAATGTGCATGTTTTTTTCGCC-GA-AGC-GT-AATATCAAATATAT-TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTT--TAAAGAATCTT-------AATACTC-TTTTTTT
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCGTTCT-TAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT--TAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATATT-ATT-CATCAACCTATAACGATACATGTTAGAGGTA-TGTTTATTCAG---CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-TTTTCTTT--AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------
blockSeqs : A TT A ATAT C AAA GACA AAA C T A A ATG G C C ATAA T T A G AAAAACCA G A A T AAAAATGA T C A AA A GCT TAATAG G T T A GA GAA TAAAATTCCT A GGG A TATA A G T T A AAAAAAAAAAAAAC G AGAG T C G T ATTT TG C T A TTTTTT A T T C T AAT A A G AT CAATTC CACACCCACTCCTGCCCGCAAC AG A C C T A T T T CCTC A CGCATT T A T T TTT T TTG G T G T A TA TGT TA TG C G A CTC C A T GTGGGGGAGTGG GGG C GAAG A CCCCCCCAACGAG A A CA A CA T AC T TAAAG A AATCGG T T TTATTTAA AA TT T G GCTATT AT CC TA T CCCG A AT TAC G T C GG G ATT A A . TA T T T C AACGATA T G T ATTCAGCTATTTT A T C C T AT TA T TG ATTTG C A AGCA TATTTACGCATAATAAATGTAAGCC C TT A A GTG T T CAAGT T T TATA GATAAGGTTTTTACA A TTGTA GT G G G A T CG A A GT C TCCA AA AT T T CCGAA T G G TTTGTT T A A CCC AAT G . TT . T GT TA C . C C T . A T GA T T . T C T . T AA
blockSeqs : . . A . . T CT . . . . . ATT G G . . . T . . . . . . A GGA . . . . . . A . . A . . . AA A . . GA . . T G . . . . . . . . T . . T . T . . . . . C . . . T AC ATAGCA . . . T . . G . G G . . . . . G . C . . G . . A . AT . . . . . . . A T . . C . . GCTCCGGTC . . . . . . G . ATA A GT . T . . . . G TTTAT G . . A . A . AA . T C GA . AAT . . . TA . . T . CG . . . CTTAAGGCC . . . . . CA . . . A . A GC GTAATTTAACGTTGATGTAAT . . . . . . . T . . . . T GT T . . . . . . A A C . CTTT . . . . . T . G T T . . . . . . . . T AT . C . C . T . A T . T T . T G T . T A
blockSeqs : . . . . . . C . . . . . TAT . G . . . T . . . . . . T AA . . . . . . . . . . . . . AA . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA CATA . . . . . . . . . . . . . . . . . C . . . . . A . AA . . . . . . . T C . . C . . C . . . . . . . . TTA A G . T . . . . G TATA G . . C . A . CG . . . G . A . . . T . . . . C . . . TAGC . . . . . AG . . . A . . A GTGAAT . . . . . . . . . . . . T AT T . . . . . . A . G . C . . . . T . G . . . . . . . . . . . TT . . . . . . . . T . T T . T G T .
blockSeqs : . . . . . . C . . . . . TAT . C . . . T . . . . . . . A . . . . . . . . . . . . . C . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA CCA . . . . . . . . . . . . . . . . . C . . . . . T . A . . . . . . . A T . . C . . C . . . . . . . . TAT A T . T . . . . G CTAT G . . T . . . AA . A . . . . . A . GTAAT . . . . . . . . . . . . T A . . . . . . . . . G . C . .
blockSeqs : . . . . . . T . . . . . TT . C . . . A . . . . . . . A . . . . . . . . . . . . . C . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA CA . . . . . . . . . . . . . . . . . C . . . . . A . A . . . . . . . A T . . C . . C . . . . . . . . ATA A G . T . . . . . TTA G . . A . . . . . . . . . .
blockSeqs : . . . . . AT . C . . . T . . . . . . . A . . . . . . . . . . . . . C . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . AA GA . . . . . . . . . . . . . . . . . . . . . . . A . A . . . . . . . T C . . . . . C . . . . . . . . TAT A T . . . . . . . . . .
blockSeqs : . . . . . A . G . . . T . . . . . . . A . . . . . . . . . . . . . C . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . A CA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . AA . . . .
blockSeqs : . . T . . . . . . . A . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . CA . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : NNT* ****** AA**** TTA**** ************************** TATA*** G* ** TA A* G* CCC*** **********
originalCons : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAA-AT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTT-ATA---AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTC--C--AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
finalCons : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAANNT-ACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAAAA----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTTA----AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGATATA---TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGA-GTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-ATTTCCC---AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111 1111 22 1 11111111 1 1111111111 222222 2222222222 1111 22222222222222 1111 111111 111 11 111111 3333333333333333333333333333 1111 111111 1111 222222222222 1111 333333333333333333333 11 1111 2222222 22222222 66666666666666666666666666 1111111 11 1111 1 111 11 111 1 1 2222222 1 1 1 4444444444444444 1 1 1 1 1 11 1 11 22222 1 33333 22222222222222222222222222222222222222222222222222222 11 111 22222 1111 333333333333333 11111 11 1 11 111 44444 11 11 1 1 22222 1 222222 1 1 111 111 1 55555555555555 11 11 44444444444444 11 2222222222 1 1 11 1 1 111
lowQualScore : 6 99 3 4444 6 888 1111 888 5 5 5 5 11 0 1 5 7777 3 2 3 3 33333333 3 3 3 0 5555555555 3 3 3 55 3 666 000000 3 3 7 3 55 666 5555555555 7 666 3 2222 3 4 8 3 4 33333333333333 4 8888 4 4 4 4 2222 66 4 8 4 777777 4 4 4 4 4 222 4 4 4 00 555555 4444444444444444444444444444 55 4 4 8 4 4 8 4 8 2222 4 111111 4 4 4 8 777 2 777 4 8 4 4 2 66 4444 66 66 4 4 4 888 5 3 6 555555555555 888 2 0000 5 333333333333333333333 5 5 66 5 66 5 11 77 8888 0000000 5 3 00000000 0 77777777777777777777777777 77 6 1 9999999 77 55 99 1 4444 5 99 000 8 33 2 999 8 222 0 8 8 8 11 8 0 5 3 0 3333333 0 0 0 0000000000000000 0 0 0 0 0 66 33 0 33 44444 0 3 22222 22222222222222222222222222222222222222222222222222222 8 11 8 8 444 8 6 00000 5 5 2222 555555555555555 1 66666 88 8 8 8 8 8 11 88 0 0 0 33 222 00000 11 88 0 0 55555 3 0 2 888888 3 0 0 777 777 0 88888888888888 33 33 3 88888888888888 33 6 9999999999 2 0 3 0 3 3 33 3 3 0 3 1 3 0 7 777
lowQualScore : . .. . .... . ... .... ... . . . . .. . . . .... . . . . ........ . . . . .......... . . . .. . ... ...... . . . . .. ... .......... . ... . .... . . . . . .............. . .... . . . . .... .. . . . ...... . . . . . ... . . . .. ...... ............................ .. . . . . . . . . .... . ...... . . . . ... . ... . . . . . .. .... .. .. . . . ... . . . ............ ... . .... . ..................... . . .. . .. . .. .. .... ....... . . ........ . .......................... .. . . ....... .. .. .. . .... . .. ... . .. . ... . ... . . . . .. . . . . . ....... . . . ................ . . . . . .. .. . .. ..... . . ..... ..................................................... . .. . . ... . . ..... . . .... ............... . ..... .. . . . . . .. .. . . . .. ... ..... .. .. . . ..... . . . ...... . . . ... ... . .............. .. .. . .............. .. . .......... . . . . . . .. . . . . . . . . ...
lowQualScore : 7 22 3 2222 7 333 8888 888 0 0 0 0 55 0 4 0 7777 6 3 6 6 22222222 6 6 6 9 9999999999 6 6 6 00 6 444 555555 6 6 3 6 00 444 3333333333 3 444 6 7777 6 0 0 2 0 55555555555555 0 5555 0 0 0 0 5555 11 4 9 4 222222 4 4 4 4 4 222 4 4 4 66 111111 0000000000000000000000000000 55 0 0 0 0 0 0 0 0 5555 0 555555 0 0 0 0 000 9 888 4 9 4 4 0 11 2222 11 11 4 4 4 888 0 6 2 666666666666 888 5 6666 0 888888888888888888888 0 0 99 0 99 0 99 00 4444 0000000 0 2 77777777 1 11111111111111111111111111 99 7 0 7777777 77 88 22 0 2222 5 22 888 0 22 5 222 0 222 8 0 0 0 66 0 8 5 2 0 8888888 0 0 0 2222222222222222 0 0 0 0 0 88 88 0 88 55555 0 2 22222 00000000000000000000000000000000000000000000000000000 0 00 0 0 000 0 7 00000 7 7 1111 777777777777777 4 22222 88 0 0 0 0 0 00 88 6 8 8 00 222 66666 00 33 0 0 00000 2 0 5 222222 2 0 0 555 555 0 88888888888888 88 88 2 88888888888888 88 5 2222222222 5 0 2 0 2 2 88 2 2 0 2 0 2 0 3 777
consensus : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAAA-TACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTNA--AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC--C-AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
Reference ( family-8625 ) : AGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAANNTACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATTGA---TGGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTTA--AATCTT-----G-AATACTC-TTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACNCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAAATTTTC-AG-TAAA-TGTATATGTAG-AGTTGTGTATATTTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCTT-AG---C------AAA-C-AGATT-CAT-TTCCC-AATACGA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTA---------------A-------------AT-------TTA-C--GTTG-CCAT-GTT---ATTCG-TAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--GT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC-CC-AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAAT-----TTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACATGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGANATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|1 : ACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAAA-TACT-TTGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTAATA---TGATT-TC-A-T-CCC--GAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GT-CT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ATAT-TTCT-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-GC-C-TGTA-TATTGA---TGGATATCT---TA-AAAACAA-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTAT--AATCTT-----G-AATACTC-CTTTTTTCCAC--------TGTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNAAA--AAAATATA-AAT--TAT--TATGGTCTATTATGT--ATATG-CTGAATGCATAT--ACACGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAACG-GG-T-TTTTTATCCGTTGTTTTAAGCGTGTGAAGCGACGTGATTGCA-G-GGACA-CAAATTT-C-AG-TAAAATGTATATGTAG-AGTTGTGTATATCTATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTTCT--AG---C------AAA-C-AGATT-TAT-TTCCC-AATACAA--AAAC-TGAT--GA-----TTTG-TATATTTATA---AGCAAATT------------GTA---------------ATTTACGTTATGTAAT-------TTA-C--GTTG-CCAT-GTT---ATTC--TAAACAT-AA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTT----------------GAAAGTTTATGATG--GT-CA-TTGG-AACGTTTTAGC-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCGGAGTACGTATAATATCATTGAG--TTGTTCTAATGCAAA-AATTTC----AAAGT---AAAAAAAAAACA--TCAAATTACACATTC-TT-ATTGGAAT-----TTT-CAGGTTAGAAGT-GG-TG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GCCGTTGTTTATATAACG--TTAAGTTCTCTTTTACCAGATGTAATTTTCCAAA--TTTTACTTCCAAACGAAAACATGCATCATGTCCTC-TTGATGTTGTTAAGTTACGT-ATTAACA--TGATT-A-CAATCACTGTCACTTTGATGATTA-TTTTCGACATGG-TTGTTTCTAAGAATTAACTTAGGGATCATTTACTTACTGCTACATCTGTCCATTAAAATTG-GCTT-ACCTACGATTAACAGA
gi|10 : ACACCTATT-C-CATTAAATAA-GTTGCA----TTATCAAC-AGTATACTTGTT--CG--CTCA---GGCCT-CTAACTTGA-TAAATGACTGTCGTA-TT----TTATAAA---TTGT--------TGTAGGCTATTTTCAA-T-TTCAA--A-------T-G-T-AA--C-TC-AC---TTA------TGATT-TC-ATT-CGC--GAAA---AAC---------CCTTTAGAA---AA-CCGA-----AAT-T-TATAC-AATA-ATAA--------------CGAAAA----GAACC-C-AC-CA-A----CTTTGC-GT-CTAAAATGTGCATG------CC-CC-GA-AGC-GGCTATA-CA---ATAG-TTCC-GCGG--TTTGTAAA-------C----C--A--------------------AACT--CACT-TTCACGACGGTACTCCAATA-CAAT-ATT-C-TG---TTCA-C--------AC-C-TGTG-TATGAA---TGGATACTT---TAGAAAACAGTAT-ATC-AAGAT--AT--ATCAAAATTGTTTT--CC--TAT-TCATT-TTT-
gi|11 : -CA---AGT-T-CTA-CTTGAATAAATTACG-TGGTA-CT----T-ATAAA-G-TTGT--------CATAG-CAGTTTTCAA-T-T-CCA--A-------TTG-T-AAAAC-TCTTT---TTA------TGATTGTC-A-TACAC--GAAAGAAAAC---------CCTTTTG-A---AA-CTGAT----AAT-T-TATAATAATATAG-AAAAAAAAAAAAAACC-AAAA----AAAAC-C-TC-AA-AATTTTTT--C-GT-CT-AAATGT-CATGT-----TCGCC-GA-AGC-GG-TATA-AAC--ATATATTCC-GC-A--TTT-TAAA-AC---CCATAGC--A--------------------AAAA--AGCC-TTCA-GA-GGTA-TCCGA-A-CAGT-ATT-CTT----TTCA-C------ATAC-CTTGTT-TA-TGA---TGGt
gi|12 : ctt---CC----G--A--------------------AAAT--AGCT-TTCAAGA-GGTA-TCCAA-AACAGTTATTTC-T----TTCA-C------A-AA-C-TGTG-TATTGA---TGG----------------CAA-AT-ATC--------------CAAGATT-TTTT--TC--TAT-TA-TT-TTT-CT---ACT-TTACTTGAT------------GTC---GCC-----AGAAGATG--------CCCCCCCAACGAGGTAAT-CA--GTT-AT--C--AAT--ATGAA-TG-GCGTC--TTTAA--AATCTT-----GTAATA--C-TTTTTTTCCAC--------T-TT-ATATT--------------------------AAA--ATAATcaaataatcagtccatttatcgtttagttct
gi|13 : aaagatatttacccgacaatttttgcaaagtaaacccgtacaatatatg-CA---AGT-T-CTA-CTGGA-TAAT-TACG-TGGTACTT----T-A-AAA-G-TTGT--------CATAG-CAGTTTTCAA-G-T-TAAGGA-------T-G-T-AA--C--CTACGCTCTATAATAGTGATT-TC-A-T-CACGAGAAA---AAC---------CCTTTGGAA---AA-CTGATGA--AGTAT-TCTAATAAGAGAT-A--------------C---TA----ATACC-C-AC-AA-A----tcccactgt
gi|14 : ttTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGT---ATATTATTGAGC-TTGTTCTAATGCAAA-A-TTT---C-AAAGTC--AAAAaaaagaaagaaagaaaaa
gi|15 : CAATCACTGTCAC-TTGATGATTATTTTTCGACATGGTTTGTTTCT-AGAATCAACTTAGGTATCATTTACTTACTGCTACATCTGT
gi|16 : ----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAT--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TT-A-T-CGC--AAAA---AAC---------CCTTTAG-A---AA-CCGAT----AAT-
gi|17 : T------------GTA---------------A--------------T-------TTA-C--GTTG-CCAT-GTT---GTTCG-TAAACATTAA-ACAAACAAGTCAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTT
gi|18 : tacgttaA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTATGATG--GT-CA-TTGGTAACGTTTTA
gi|19 : ----------AACATGCATCATGTCCTC-TTGATGT----AAGTTACGTTATTAACA--TGATTTATC
gi|2 : gAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---GGC-T-CTA-CTTGA-TAAA-TACT-TCGTA-TT----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA--A-------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AA-CCGAT----AAT-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCCAGA-AGT-G--TAT--CA---ATAT-TTCC-GC-G--TTTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCAAC------A-AC-C--GTG-TATTGA---TAGATATCT---TA-AAAACAG-AT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTATA--AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------TAA--AAAATATA-AGA--TATA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAA-TATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTGT-AAGCTACGTGATTGCA-G-GGACA-CAA---TTC-AG-TAAA-TGTATATGTAG-ATTGGTGTATAAT-ATTTCGT-ATCCTAT--CG---TATGT-AGAG-TA-TTTTC--T-AG---C------AAAAC-AGATT-CAT-TTCCC-AAAAATA--AAAC-TGAT--GAA----TTTG-TATATTTATA---A-CAAATT------------GTG---------------A-------------AT-------TTA-C--GTTG-C-AT-GTT---ATTCG-CAAACATTAA-ACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAGTTTTTGATG--AT-CA-TTGGTAACGTTTTAGT-ATTGTAAA-CC-AAT-ATCTACTGC-TC--CCG-AGTACGTATAATATTATTGAGG-TTGTTCTAATGCAAA-A-TTTC----AAAGTC--AAAAAAGAAACA--TCAAATTACACATCC-TT-ATTGGAATCCGAATTTTCAGGTTAGAAGT-GGGTG-----TTTATCCTATT-AAAT-CGGAA---TTA---GAAAA-GC--------------CG--TT--GTTCTATATTAC-----GT-------TAAG--TTTCTCT----------AACGTGCATCATGTCCTC-TTGATGTTGT-AAGTTACGTTATTAACA--TGATTTATCAATCACTGTCAC-TTGATGATTATTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCGACGTCTGTTGATTAAAATTATGCTC-A-CTACGATTAACAGAA
gi|20 : TAATACAAA-----CAAG-TG-GGTTATGCAT----ATTTTT---------------GAAAG
gi|3 : cgaT----T-A-AAA-G-TTGT--------GTTAG-CAGTTTTTAAAT-T-CAA--AA------T-GCT-AA--C-TCTAC---TTA------TGATT-TCTA-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-ACGAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-AC-CA-A----TTT--C-GTTCT-AAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCCAGC-G---TTGTAAA-AA---CC----C--A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAG-AT-ATC-AAGATTAAT--A-CAAAATTGTTTT--TC--TAT-TAAAT-TTT-TT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTTAAT--CAAAAC--ATGAA-T--GCGTCTTTTTTA--TATCTT-----T-AATACTCTTTTTTTTCCAC--------TATTAATATT--------------------------AAA--AAAATATATAGGGCTATT-TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAGAAAAATATCTAATTAGTGCATCCA--TCAACG-GGGTGTTTTTATCCGTTGTTTTAAGCGTGT-AAG-TACGTGATTGCAGG-GGACAGCAAATTTTCAAG-TAAA-AGT-----------TTGTGTATATTTATTTCGT-ATCCTAT--C----TATGT-AGAG-TATTTTTTCTT-AAGGCC------AAA-C-AGATTCCAT-TTCCC-AATACAA--AAACTTGATTGAAA----TTTGCTATATTT-TA---GCCAAATT------------GTAATTTAACGTTGATGTA-------------AT-------TTACC--GTTG-CCATAGTT---ATTCG-TAAACATTAA-ACAAAT----CAAGTTG-GGTTATGCAT----A-TTTT---------------GAAGATTTTTGATG--A--CA--TGGTAACGTTT--AT-ATTGTAAA-CC-AAT-ATCTACTGCTTC--CTG-AGTACGTATAATATTATTGAGG-TTGTCTAAATGCAAACA-TTTT-CCAAAAGTCAAAAAAAAGAAACAATCCAAATTACACATCCTTT-ATTGGAAA-----TTTTCAGGTTAGAAGT-GGGTG------TTATCC-ATTAAAAT-CGGAA---TTA---GAAAAGGC--------------CGTTTT--GTTCTATA-TAA-----AT-------TAAG--TTT-TCT----------
gi|3 : ta----------AACATG-ACCAGTTCCTCCTTGATGCTGT-A-GTTACGTTATTAACAGATGATTTATCAATCACTGTCAC-TTGATGATATTTTTTCGAGATGGTTTGTTTCT-AGAATCGACTCAGGTATCATTTACTTACTGCTACATCTGTCCATTAAAATTATGCTCAA-CTACGATTAACAGAAtcttttaccgattgttaattttccaaatttttattaccaaagaacatgaccagttcctccttgatgctgtagttacgttattaacagatgatttatcaatcactgtcacttgatgatattttttcgagatggtttgtttctagaatcgactcaggtatcatttacttactgctacatctgtccattaaaattatgctcaactacgattaacagaa
gi|4 : tattaaaagttgtgttagcagtttttaaattcaaaatgctaactctacttatgatttctatcgcaaaaaaaacctttagaaaacgataatttataaaatatatacaagaaaacccaccaatttcgttctaaatgtgcatgtcgccgaagcggtatacaacatttccagcgttgtaaaaacccaaactaactttgacgaggtatccaaacaatattctttcacaacctgtgtatgggtggatatcttaaaaacagatatcaagattaatacaaaattgtttttctattaaattttttacttttctcgatgtcgccaagaagtgcgtaatcaacgttaatcaaaacatgaatgcgtcttttttatatctttaatactcttttttttccactattaatattaaaaaaatatatagggctatttatggtcttttatgtgatatctgaatgcatatacacgtgacagaaaaatatctaattagtgcatccatcaacggggtgtttttatccgttgttttaagcgtgtaagtacgtgattgcaggggacagcaaattttcaagtaaaagtttgtgtatatttatttcgtatcctatctatgtagagtattttttcttaaggccaaacagattccatttcccaatacaaaaacttgattgaaatttgctatattttagccaaattgtaatttaacgttgatgtaatttaccgttgccatagttattcgtaaacattaaacaaatcaagttgggttatgcatattttgaagatttttgatgacatggtaacgtttatattgtaaaccaatatctactgcttcctgagtacgtataatattattgaggttgtctaaatgcaaacattttccaaaagtcaaaaaaaagaaacaatccaaattacacatcctttattggaaattttcaggttagaagtgggtgttatccattaaaatcggaattagaaaaggccgttttgttctatataaattaagttttcttcttttaccgattgttaattttccaaatttttattaccaaagCCTAT--CTC---GAATAAAG--GCAATATTTATCAACCAGAATGCT-GTAAACGGACACAAAAGGC-T-C-A-CTTGA-TAAA--ACT-TCGTA-TCATAAT-AAAAA-G-ATGTAAAAACCACGTAG-CAGTTT-CAA-TATACAA--AAAAATGAT-G---AG--CATCTAC---TTAA-----TGATT-TC-AAT-CGC--TCAA---AATAAAATTCCTCCTTTAG-AGGGAA-CCGATTATAAAT-TGTATAA-A-TA-AT-A--------------C-AAGA----AAACC-CCAC-CA-A----TTT--C-GT-CT-AAATGTG-ATG------TCGCC-GATAGCTGG-TTAA-CA---A-AT-TTCC-GC-GT-TTTGT-AA-AA---CC----CATA--------------------AACT--AACG-TTCACGA-GGTATTCCAA-A-CAATGATT-TGT----TTCA-CCGCATTA-AC-C-TGTGTTATTGATTTTAGATATCTTTGTA-AAAACAG-ATGATCTAAGTC--ATTGT-TTAAATTGTTTT--TCTGTGT-TAATTGTGT-CT---ACG-TT-CT-GACGTGGGGGAGTGGGTCGGGGCCAGAAGAGACG-TGGCTCCGGTC------------GTAAT-CAAC--T-AT--C-ACATCAATGAATT--GC-TC-CTTTTAT-AATCTTAATCGG-AAGACTC--TTTTTTCCACTTATTTAATATTAATATT--------------------------AAATTAATACATA-A-A--TTTATTATGGTCTATTATGTATATATCCCTGAATGCA-ATTAACCCAACCCGGACAGAAAA--ATC--ATTTGTGCATCCAATTCAATACAGGT-TTTTGATCCGTTGTTT
gi|5 : caatgttaaacttaccagcacAGACTCAGTCTCAACCATTTAACACCTATT-CTCA--GAATAA-GTTGCA----TTATCAAC-AGAATGCTTGT---CG--C-CA---G---C-CTA-CTTGA-TAATATACT--CGTA-TT----T-ATAAAAG-TTGT--------CGTAG-CAGTTTTCAA-T-T-CAA----------T-G-T-AG--C-TCTAC---TTA------CGATT-TC-A-T-CGC--GAAA---AAT---------TCTTTAG-A---AAACCGAT----A-T-T-TATTA-AATATAT-A--------------C-AAGA----AGACC-C-AC-CA-A----TTT--C-GT-CT-AAATATGCATG------TCGCC-GA-AGT-GG-TATA-CA---ATAT-T-CC-GC-G--TTTGTAAA-A----CC----C--A--------------------AACT--AACT-TTCACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTGGTATTGA---TAGATAT-T---TA-AAAACAG-AT-ATC-AAGAT--AT--AACAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTACTTGAT------------GTC---GC-A----AGAAG-TG--------C------------GTAAT-AAACGT--AT--C-AAAC--ATGAA-T--GCGT---TTTTAT-AATCTT-----G-AATACTC-TTTTTT-CCAC--------TATTAATATT--------------------------AAA--AAAATA-A-AGA--T-TA-TATGGTCTATTATGTG-ATAT--CTGAATGCATAT--ACTCGA----GACAGAAAAATATCTAATTAGTGCATCCA--TCAAAA-GGGT-TTTTTATCCGTTGTTTTAAGCGTG--AAGCTACGTGATTGCA-GAGGACA-CAAA--TTC-AG-TAAA-TGTATATGTAG-AGTTGTGT-TATT
gi|6 : CACCTATTACTCA--GAATAAAGTTGCC----ATATCAAC-AGAATGCTTGT---CT--T-CA---AGC-TTCTA-CTTGA-TAATATACCGTGGTA-CT----T-ATAAA-GGTTGT--------CATAG-CTAATTTCAA-T-TTCAA--A-------T-G-TAAA--C-TCT-T---TTA------TGATT-TC-A-T-CAC--GAAA---AA-----------CTTTGG-A---AA--CGAT----AAT-T-TATAA-AATAT-T-A--------------C-AAAAAGAGAAACCTC-AT-AA-AT---TTT--C-GT-CT-AAATGTGCATGTTTTTTTCGCC-GA-AGC-GT-AATATCAAATATAT-TTCC-GC-AATTTTTTAAACAATTCCC----C--ACACCCACTCCTGCCCGCAACAATTAGAACTATTAAAGA-TGTA-TCCAA-A-CAGT-ATC-C-TCCTCTCCA-C------A-ACAC-TGTG-TATTGA---TAGGC-----------AAAT----T-ATC-AAG-------------GATTGTTTTTATC--TATCTAATT-CTTACTCTCACTCTTACTTGAT------------GTA---GCCA----AGAAG-TG--------C------------GTAATACAACGTT-ATCAC-AAAT--ATTAA-TACGCGTC-TTTTAAAGAATCTT-------AATACTC-TTTTTTT
gi|7 : aatttgcattcattcctcacccagaaat----T-ATAAA-G-TTGT--------CGTAG-CAGTTTTTAA-T-T-CAA--A-------T-G-T-AA--C-TCTAC---TTA------TGATT-TC-A-T-CGC--AAAA---AAAA--------CCTTTAG-A---AA-C-GAT----AAT-T-TATAA-AATATAT-A--------------C-AAGA----AAACC-C-ACGCATA----TTT--CCGTTCT-TAATGTGCATG------TCGCC-GA-AGC-GG-TATA-CA---ACAT-TTCC-GC-G--TT-GTAAA-AA---CC----CC-A--------------------AACT--AACT-TTGACGA-GGTA-TCCAA-A-CAAT-ATT-C-T----TTCA-C------A-AC-C-TGTG-TATGGG---TGGATATCT---TA-AAAACAGGAT-ATC-AAGAT--AT--A-CAAAATTGTTTT--TC--TAT-TAATT-TTT-CT---ACT-TTTCTCGAT------------GTC---GCCA----AGAAG-TG--------C------------GTAAT-CAACGTT-AT--C-AAAC--ATGAA-T--GCGTC-TTTTAT--AATCTT-----T-AATACTC-TTTTTTTCCAC--------TATTAATATTAA------------------------AAA--AAAATATA-AGAC-TAT--TATGGTCTTTTATGTG-ATAT--CTGAATGCATAT--ACACGT----GACAG-AAAATATCTAATTAGTGCATCCA--Tttttccagtgtacacaatatctacaaataa
gi|8 : A-A-GGACA-CAAAATTTC-AGATAAA-TG-ATATATAGTAGTTGTGTATATT-ATT-CATCAACCTATAACGATACATGTTAGAGGTA-TGTTTATTCAG---CTATTTTAAA-CTAGTTT-CATCTTCCCTAATAAGATAAAAC-TGAT--GAATTTGTTTG-TATATTTATAAGCA-TAGATTTATTTACGCATAATA---------------A-------------ATGTAAGCCTTA-CTTGTTGACCAT-GTTGTGATTCGTTAAACATTAA-ACAAA-----CAAG-TGTGGTTATGAATTATAATTTTTGATAAGGTTTTTACAGAAAGTTTTTGATGTTGTACAGTTGATAACG-TTTAGTGAGTGTAAAGCCGAATAATCTACTGC-TTCGCCG--TTACAT-TAATA-TA-TGAGGTTTGTTCTAATGTCAT-T-TTTCTTT-AAGGTC--A
gi|9 : tttTACACATCC-TTTATTGGAAT-----TTTTCAGGTTAGAAGTGGGGTGTTTGTTTTATCCTATT-AAAGACGGAACCCTTGAATGAAAA-GC--------------CA--CT--GTTCTATATAAC-----TT-------TAAGTATTCCTCT----------