lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 555 1 1 22222 2222 33333333333 1 111 1 33 333333 1 33333 333 1 11 222 11111 11 1 222 11 222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 1 1 1 111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111 11 11 1111 4444444444444444 111 1 1
lowQualScore : 5 0 555 2 5 5 6 33333 8888 00000000000 7 7 6 666 6 3 11 777777 2 6 6 6 9 33333 111 0 3 22 3 9 777 99999 88 0 666 22 888888 22 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 1 5 4 77 1 5 5 5 3 666666 5 5 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 5 1 5 5 22 333 5 0 2 88 11 6 0 3 6 33 0 444 1 5555 4444444444444444 111 5 5 6 5 66 0
lowQualScore : . . ... . . . . ..... .... ........... . . . ... . . .. ...... . . . . . ..... ... . . .. . . ... ..... .. . ... .. ...... .. ...................................................................................... . . . . .. . . . . . ...... . . . ................................................................................................................................... . . . . . .. ... . . . .. .. . . . . .. . ... . .... ................ ... . . . . .. .
lowQualScore : 5 0 000 5 0 5 7 77777 7777 77777777777 0 3 7 777 7 3 77 000000 0 7 0 7 0 33333 000 0 2 00 2 2 222 33333 55 0 000 00 888888 00 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 2 2 44 4 0 0 7 7 444444 7 7 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 7 4 7 7 33 111 7 1 5 66 00 7 8 0 8 00 8 222 8 0000 7777777777777777 777 6 1 0 0 99 7
consensus : CCGATATAGAAGATAAATATNTCTTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC----TTTC---TAATTCTACTGCCAGCG-C-CAGNTC-TA--CCGCG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-TGATTTTGTCCTCTTAAAAATN--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CATGCCTNAC--CTCTTTAACGATA----------G----------AAACTAGCTCGGC-GATAT-GT-AGGC-C-TAGC-TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAAATGATGA------CG-TAG-TGTCTGCATA-A--T-ACAAGCAAAGGGACAAAACCTC-GA-GTCT-------TT--AAGATCGGGGTC-GATTCACTCGA--TG--ATCATT----GCT--------TTTGNAAACACATTTCTAATNAATT-----TTTCGCAGTCAAT-TTCA-GCG-GT-CATTANT-A-TTA-ATGACCGGTCAATATTGTGCACGT--GCAGTG-ATTCGGAGGT-CATTATTGCAGTAAGCAGCG-CATTTTGGAGTC---A---TC---G---AATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( gi|1 ) : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC----TTTT---TAATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-G-TTTTGT-GTCATTC------TAAGTTTGATAAAA----TCATACCTTAC--TTCTTTAACGATA----------G----------AAACTAGCACGGT-AATAT-GT-AGGC-C-TAGCGTTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAAAGGATGA------CG-TAG-TGTCTGCATATATGTTACAAGCAAAGGGACAAAACCGCGGACGTCT-------TTCGAAGATTGAGGTTTGATTCTCTTGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT----ATTTTGCAGTCAAT-TTCA-GCA-GT-CATTAAT-A-TTA-ATGACCGGTCAATATTATGCACGT--GCAGTG-ATTCAGAAGG-CATTATTGCAGTAAACAGCG-CAATTTGGAGTC---A---TC---G---AATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|3 : CCGATATAGAA-ATAAA--TATCTT-ATTTGTGACACGCCAC--TGATAT-AAATTCTAC----TTCC---TAATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-A-TATTGT-GTCATTCTACATGTAAGTTTGATAAAAG---TCATACTTAAC--CTCTTTAAC-------------------------------GCAC-----AT----T-AGGC-C-TATCGTTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAAATGATGA------CG-TAGTTGCTTGCCTACATGT----AACAAAG---CAAA-----GGA-GTCT-------T----------------GATTCTCTTGA--TA--GTCATT----GCT--------TTT-TAAACATATTTCTAATT---------TTTCGTGGTCAAT-TTCAGGCG-GT-CATT-AT-T-TTATATGACCGGTCAATATTGTACACGT--GCAGTG-ATTCGGTAGGTCATTATTACAGTAAACAGCG-CATTTTGGAGTCATTA---TC---A---AATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTAC
gi|2 : aCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC----TTTC---TAATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-A-TTCTGTTATCATTC------TAACTTTGATAAAAAAGTCCATAC-TGACCTTTGTTT-----TA----------G----------AAACTAGCTCGGCCGAT-T-GTCAGGCGC-TAGC-TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAAATGACAC------CG-TAG-TGTTTGCATACATTTAACAAATAATGGGACAAAACCTCAGAAGTCT-------TT-G-----------------CTTTT---------TCATT----GCT--------TTTAAAAACA----TC--------------TTTTGCAGTCACT-TTCA-ACG-GT-CATTATT-A-TTA-ATGACTATTCAATATTGTCTACGT--GCAGTG-ATTCGGAGGT-CATTATTGCAGTAAGCAGCG-TATTTTGGAGTCATTA---TC---G---AATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|4 : aATTT-TAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATA---CTAG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCC-AA-TGATTTTGTCCTTGTAAAAAT----AATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAAA--------GTCCTAC--CTCTTTAAAGATA----------GAAAGACATTCAAACTAGCTCAGC-GACAT-GT-A-GC-C------TTCGAAGCTGTTTACATCAGATCAAAACATAAtag
gi|16 : tcaagttttctataatttttagacctattttggaacatacattgtaTTCAAGGAAAGG-CCT-AATTCAAA-TGATTT-GTCCTCTTAAAAATA--GAATGCTG-
gi|11 : TG-CTTCAT--TACA-ATATA-TTTTGT-ATCATTC------TACGTCTGATAAAA--------GGCCTAC--CTCTTTACAGATT----------T----------AAACTAGCTCAGC-GACAT-GT-A-GC-C-Tt
gi|5 : aaAAATTTGATAAAT----GTATGTCT-------CTGTAACAAAACCAACACATTG----------AAACTA-TATTGT-A-TATCGC-AGACACATAGTCTTCATTGTTG--------AAATC-AGATAGGACA-TA--CATTGGGTAC-AGAAATAATGA------CG-TAG-TTTCTGCA------TCACAAG------GAT---------GTTATCT-------TTCGCTAGTCAAAGT------CACTCGACATA--ATCATTATATGCTATATGTAATTTGGAATCA-ATTTGTAATCAATTTGTAAGTTGACA---AAG-TTCT-GCG-GT-CATTAAC-AATTA-A----CAGTCAATATTGTGCACAT--GCAGTA-Atcg
gi|8 : TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAA--ATTCGGTAC-AAAAATGATGA------CA-TTG-TGTCTGCACA------ACAAGCAAAGGGA-------------ATCT-----------AAGATTGGGATTAGATTCACTCGA--
gi|6 : cgcttgacaagataaggagtatactatctaatcacatgtattcGTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAAATTATGA------TG-TAG-TGTCTGCA------TTACAAGCAAAGGGACAAAACCTCAGAAGTCT-----------AAGATTGGGGTTTGATTCAATAGA--TGTAATCATT----GCT--------T----ATATACAGTT-TAATGAA------------CAGTCAAT-ATTATGCATGTGCAGTGAT---TC---CGA--GGTCATTAT--TGCA-GTAAACAGCACAT--AGGAGT-CATTATTG--------------AATT---------------------------TTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--ATcataat
gi|9 : TGATG-CAAAT--TGTGCACAAAAAATGATGA------CAATAG-T--CTGCATA------ACAAGCAAAGGGACAGAACCTTTGTTATCTACCAGAATTCTAAGATTGGGCTCTGATTCACTTGA--TG--g
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTG-AT-TA----ACAAGCGAAGGAAtaat
gi|18 : TT----CTTTTGCAGTCAAT-TTCA-GCG-GT-CATTATT-A-TTA-ATGA
gi|2 : GTAGACAATATTGA-ATA-GT-CATTAAT-A-ATA-ATGACCG
gi|7 : accgaatagaagataaatatcttttatatgtgacacgcattgatatgaaattctactttctaattctactgccagcggcgcagatcgtatccgtgcgacaaagattgtgtttcgactgatcgaatcatgtcaaattttcaaagaaagggcctgaatccaaaacgattttgtcctcttaaaaatgaggaatgctgtgttcataatacagataattctgttatcattctaactttgataaaaaagtccatactgacctttgttttagaaactagctcggccgattgtcaggcgctagctttgtagttgtttacagcagatccagagatgacgcaaatattgggcacagaaaatgacaccgtagtgtttgcatacatttaacaaataatgggacaaaacctcagaagtctttgctttttcattgcttttaaaaacatcttttgcagtcactttcaa-TTCA-GCA-GT-CGTTATTTA-GTA-ATGACCAGTCAATATTGTGCACGT--GTAGTG-ACTCGGAGGT-CATTATTGCAGTAAACAGCA-CATTTTGGAGTC---ATTGTT---G---AATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAgtgcagtgattcggaggtcattattgcagtaagcagcgtattttggagtcattatcgaattttaaagtcttccagtcagccaatcagatttgagaattactaatag
gi|10 : tcaatttatatagagaacaCATTA-ATTCGGA-GG-TAG-ATT-CTGTGAGCAGTGTC--TTTGAAATC---A---TTATTG---AATTTGAAATAAGGCTTCCAATCAGCCAATCATATTttat
gi|13 : gtattaattaatattcagttat-CATTTTGGAGTC---A---TC---GTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAA
gi|19 : aTCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAAt
gi|20 : GTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|17 : GTCAGCAAATCAGATTTGAGA--ATTAATAAtacta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC
Unaligned ( gi|14 ): CTCCCATTAACCAATGAGATTTGAGAATTGATGATAGATGTATAATAAATAATTGTATATATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2 2 1 11 11 22222 11 1 1 1 2222222222222 22222 111 11 111 222222 444444444444444 555555555555555555555555 111 111111111 1111 4444444444 111111111111111111111111111111111111111111 111111 1111 3333333333333333333333333333333333333333 111 3333333333333333 111
lowQualScore : 7 3 7 1 3 2 0 33 33 0 55555 0 33 2 55 2 0 0 1 0 7777777777777 6 2 2 0 55555 8 8 0 8 0 5 999 5 6 11 8 000 8 333333 111111111111111 99 2 888888888888888888888888 222 6 6 6 999999999 3 1 55 9 2 2222 888 5 5 7777777777 0 000000000000000000000000000000000000000000 5 1 4 111111 7777 2222222222222222222222222222222222222222 6 5 3 222 5 1 2 6 1 0 3 1111111111111111 000 1 0 55
lowQualScore : . . . . . . . .. .. . ..... . .. . .. . . . . . ............. . . . . ..... . . . . . . ... . . .. . ... . ...... ............... .. . ........................ ... . . . ......... . . .. . . .... ... . . .......... . .......................................... . . . ...... .... ........................................ . . . ... . . . . . . . ................ ... . . ..
lowQualScore : 3 3 3 0 3 5 0 88 22 8 00000 2 88 5 00 5 0 0 0 0 0000000000000 5 5 5 2 00000 0 0 8 0 8 6 888 2 7 22 0 000 0 000000 888888888888888 22 5 555555555555555555555555 888 7 7 7 111111111 0 7 22 4 5 0000 888 0 0 2222222222 3 999999999999999999999999999999999999999999 7 9 0 555555 0000 1111111111111111111111111111111111111111 3 7 0 999 7 4 2 7 0 7 9 1111111111111111 000 0 4 55
consensus : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAA-A-----CATGCCT-ACCTCT--TTAACGATA----------G----------AAACTAGCTCGGC-GACAT-GT-AGGC-C-TAG-C-TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCTC-G----------GA--GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTA---TC---G---AATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( family-8555 ) : CCGATATAGAAGATAAATATNTCTTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTCTACTGCCAGCG-C-CAGNTC-TA--CCGCG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-TGATTTTGTCCTCTTAAAAATN--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAA-A-----CATGCCTNACCTCT--TTAACGATA----------G----------AAACTAGCTCGGC-GATAT-GT-AGGC-C-TAG-C-TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCTC------------GA--GTCTTT--AAGATCGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTGNAAACACATTTCTAATNAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTANT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGCATTTTGGAGTC---A---TC---G---AATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|1 : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC-----TTTTTA--ATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-G-TTTTGT-GTCATTC------TAAGTTTGATAAA-AT----CATACCTTACTTCT--TTAACGATA----------G----------AAACTAGCACGGT-AATAT-GT-AGGC-C-TAG-CGTTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAA---AGGATG---ACG-TAG-TGTCTGCATATATGTT---ACAAGCAAAGGGACAAAACCGC------------GGACGTCTTTCGAAGATTGAGGTTT-GA-TTCTCTTGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATTAT-----TTTGCAGTCAATTTCA-GCAGTCATTAAT-A-TTA-ATGACCGGTCAATATTATGCACGTGCAGTGATTCAG-AAGGCATTATTGCAGTAAACAGCGCAATTTGGAGTC---A---TC---G---AATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|10 : CATTAATTCGG-AGGTAG--ATT-CTGTGAGCAGTGT-CTTTGAAATC---A---TTATTG---AATTTGAAATAAGGCTTCCAATCAGCCAATCATATT
gi|11 : gtattaattaatattcagttatAATGCT----TCAT--TACA-ATATA-TTTTGT-ATCATTC------TACGTCTGATAAA-A-----G--GCCT-ACCTCT--TTACAGATT----------T----------AAACTAGCTCAGC-GACAT-GT-A-GC-C-T
gi|13 : CATTTTGGAGTC---A---TC---GTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAAtcg
gi|14 : aCTCCCA-TTAACCAATGAGATTTGAGA--ATTt
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTG-ATT-A-------ACAAGCGAAGGAAgatgatagatgtataataaataattgtatatatg
gi|16 : TTCAAGGAAAGG-CCT-AATTCAAA-TGA-TTTGTCCTCTTAAAAATA--GAATGCTG-
gi|17 : CAGTCAGCAAATCAGATTTGAGA--ATTAATAAt
gi|18 : ctcttctatgTC-T-----TTTGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGAtagag
gi|19 : tCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAA
gi|2 : tCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC-----TTTCTA--ATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-A-TTCTGTTATCATTC------TAACTTTGATAAA-AAAGTCCATAC-TGACCTTTGTTT-----TA----------G----------AAACTAGCTCGGCCGAT-T-GTCAGGCGC-TAG-C-TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAA---ATGACA---CCG-TAG-TGTTTGCATACA---TTTAACAAATAATGGGACAAAACCTCAG----------AA--GTCTTT----GCTT-----------TT--------------TCATT----GCT--------TTTAAAAAC-------------ATC-T-----TTTGCAGTCACTTTCA-ACGGTCATTATT-A-TTA-ATGACTATTCAATATTGTCTACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGTATTTTGGAGTCATTA---TC---G---AATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|20 : aGTCAGCCAATCAGATTTGAGA--ATTACTAAtag
gi|3 : CCGATATAGAA-ATAAATATCT---TATTTGTGACACGCCAC--TGATAT-AAATTCTAC-----TTCCTA--ATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-A-TATTGT-GTCATTCTACATGTAAGTTTGATAAA-AGT---CATACTTAACCTCT--TTAACG---------------------------C-----------ACAT--T-AGGC-C-TAT-CGTTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAA---ATGATG---ACG-TAGTTGCTTGCCTACA---T---GTAA-CAAAG---CAAAG----------------GA--GTCTT-----------------GA-TTCTCTTGA--TA--GTCATT----GCT--------TTT-TAAACATATTTCT----AATT-T-----TTCGTGGTCAATTTCAGGCGGTCATTATT---TTATATGACCGGTCAATATTGTACACGTGCAGTGATTCGGTAGGTCATTATTACAGTAAACAGCGCATTTTGGAGTCATTA---TC---A---AATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACtacta
gi|4 : aATTT-TAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATACT---AG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCC-AA-TGATTTTGTCCTTGTAAAAAT----AATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAA-A--------GTCCTACCTCT--TTAAAGATA----------GAAAGACATTCAAACTAGCTCAGC-GACAT-GT-A-GC-------C-TTCGAAGCTGTTTACATCAGATCAAAACATAA
gi|5 : tcaagttttctataatttttagacctattttggaacatacattgtaAAATTTGATAAATG-----TATGTCT-----CT--GTAACAAAACCAACACATTG----------AAACTATATTGT---ATATCGC-AGACACATAGTC-TTCATTGTTG--------AAATC-AGATAGGAC---ATACATTGGGTACAGAAA----TAATG---ACG-TAG-TTTCTGCAT------C---ACAAG------GATGTTATCTT-----------------TCGCT--A--------G-TC-AAAGTCACTCGACATA--ATCATTATATGCTATATGTAATTTGGAATCA-ATTTGTAATCAATT-TGTAAGTTGACA---AAGTTCT-GCGGTCATTAAC-AATTA-A----CAGTCAATATTGTGCACATGCAGTAA
gi|6 : GTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAA---ATTATG---ATG-TAG-TGTCTGCAT------T---ACAAGCAAAGGGACAAAACCTCAG----------AA--GTC--T--AAGATTGGGGTTT-GA-TTCAATAGA--TGTAATCATT----GCT--------T----ATATACAGTT-TAATGAA-------------CAGTCAAT-----------ATT----------ATG------CA----TGTGC------AGTGATTCCG-AGGTCATTATTGCAGTAAACAGCACA--TAGGAGTCATTA---TT---G---AATTTTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--AT
gi|7 : TTCA-GCAGTCGTTATTTA-GTA-ATGACCAGTCAATATTGTGCACGTGTAGTGACTCGG-AGGTCATTATTGCAGTAAACAGCACATTTTGGAGTC---ATTGTT---G---AATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAg
gi|8 : tcaatttatatagagaaca-C-TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAAAT--TCGGTACAAAAA----TGATG---ACA-TTG-TGTCTGCACA-A--------CAAGCAAAGGGA-------------------------ATCT----AAGATTGGGA-TTAGA-TTCACTCGA--ttat
gi|9 : cgcttgacaagataaggagtatactatctaatcacatgtattTGATG-CAAAT--TGTGCACAAAAA---ATGATG---ACAATAG-T--CTGCATA-A--------CAAGCAAAGGGACAGAACCTTTGTTATCTACCAGA--AT-TCT--AAGATTGGGC-TCTGA-TTCACTTGA--TG--cataat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC
Alignments
lowQualScore : 1 111 1 11 11 22222 11 1 1 1 22 222222 22222 222 11 111 222222 44444444444444 555555555555555555555555 222222222 3333333333 5555555555 9999999999999999999999999999999999999999 111111 1111 2222222222222 22222222222222222 111 111
lowQualScore : 7 3 3 000 0 33 33 0 55555 0 33 1 55 2 0 0 1 0 33 555555 6 2 2 0 55555 8 8 0 8 0 5 000 5 6 11 8 000 8 333333 66666666666666 99 2 888888888888888888888888 333333333 5 3333333333 3 1 55 3 2 888 888 5 5 0000000000 4 0 0 4444444444444444444444444444444444444444 5 1 4 111111 7777 9999999999999 99 0 11111111111111111 6 5 1 222 5 1 2 6 1 3 000 1 0 55
lowQualScore : . . . ... . .. .. . ..... . .. . .. . . . . . .. ...... . . . . ..... . . . . . . ... . . .. . ... . ...... .............. .. . ........................ ......... . .......... . . .. . . ... ... . . .......... . . . ........................................ . . . ...... .... ............. .. . ................. . . . ... . . . . . . ... . . ..
lowQualScore : 3 3 2 222 0 88 22 8 00000 2 88 0 00 5 0 0 0 0 88 222222 5 5 5 2 00000 0 0 8 0 8 6 000 2 7 22 0 000 0 000000 77777777777777 22 5 555555555555555555555555 555555555 7 8888888888 0 7 22 2 5 888 888 0 0 2222222222 5 1 3 7777777777777777777777777777777777777777 7 9 0 555555 0000 2222222222222 44 6 99999999999999999 3 7 9 999 7 4 2 7 0 9 000 0 4 55
consensus : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CATACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C-TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( family-8555 ) : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CATGCC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTAGC-TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|1 : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC-----TTTTTA--ATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-G-TTTTGT-GTCATTC------TAAGTTTGATAAAAT----CATACCTT-ACTTCT--TTAACGATA----------G----------AAACTAGCACG------GT-AATATGT-AGGC-CTAGCGTTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAA---AGGATG---ACG-TAG-TGTCTGCATATATGTT---ACAAGCAAAGGGACAAAACCG-----------C-GGACGTCTTTCGAAGATTGAGGTTT-GA-TTCTCTTGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATTAT-----TTTGCAGTCAATTTCA-GCAGTCATTAAT-A-TTA-ATGACCGGTCAATATTATGCACGTGCAGTGATTCAG-AAGGCATTATTGCAGTAAACAGCGCAATTTGGAGTC---ATCGAATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|10 : CATTAATTCGG-AGGTAG--ATT-CTGTGAGCAGTGT-CTTTGAAATCATTATTGAATTTGAAATAAGGCTTCCAATCAGCCAATCATATT
gi|11 : gtattaattaatattcagttatAATGCT----TCAT--TACA-ATATA-TTTTGT-ATCATTC------TACGTCTGATAAAA-----G--GCC-T-ACCTCT--TTACAGATT----------T----------AAACTAGCTCA------GC-GACATGT-A-GC-CT
gi|13 : CATTTTGGAGTCATCGTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAAtcg
gi|14 : aCTCCCA-TTAACCAATGAGATTTGAGA--ATTt
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTG-ATT-A-------ACAAGCGAAGGAAgatgatagatgtataataaataattgtatatatg
gi|16 : TTCAAGGAAAGG-CCT-AATTCAAA-TGATTT-GTCCTCTTAAAAATA--GAATGCTG-
gi|17 : CAGTCAGCAAATCAGATTTGAGA--ATTAATAAt
gi|18 : ctcttctatgTC-T-----TTTGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGAtagag
gi|19 : tCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAA
gi|2 : tCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC-----TTTCTA--ATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-A-TTCTGTTATCATTC------TAACTTTGATAAAAAAGTCCATACT-G-ACCTTTGTTT-----TA----------G----------AAACTAGCTCG------GCCGAT-TGTCAGGCGCTAGC-TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAA---ATGACA---CCG-TAG-TGTTTGCATACA---TTTAACAAATAATGGGACAAAACCT-----------CAGAA-GTCTTT----GCTT-----------TT--------------TCATT----GCT--------TTTAAAAAC-------------ATC-T-----TTTGCAGTCACTTTCA-ACGGTCATTATT-A-TTA-ATGACTATTCAATATTGTCTACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGTATTTTGGAGTCATTATCGAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|20 : aGTCAGCCAATCAGATTTGAGA--ATTACTAAtag
gi|3 : CCGATATAGAA-ATAAATATCT-T--ATTTGTGACACGCCAC--TGATAT-AAATTCTAC-----TTCCTA--ATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-A-TATTGT-GTCATTCTACATGTAAGTTTGATAAAAGT---CATACT-TAACCTCT--TTAACG---------------------------C-----------------ACAT-T-AGGC-CTATCGTTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAA---ATGATG---ACG-TAGTTGCTTGCCTACA---T---GTAA-CAAAG---CAAA-----------------GGA-GTCTT-----------------GA-TTCTCTTGA--TA--GTCATT----GCT--------TTT-TAAACATATTTCT----AATT-T-----TTCGTGGTCAATTTCAGGCGGTCATTATT---TTATATGACCGGTCAATATTGTACACGTGCAGTGATTCGGTAGGTCATTATTACAGTAAACAGCGCATTTTGGAGTCATTATCAAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACtacta
gi|4 : aATACAT-TGTAATTTTAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATACT---AG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCC-AA-TGATTTTGTCCTTGTAAAAAT----AATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAAA------GT-CC-T-ACCTCT--TTAAAGATA----------GAAAGACATTCAAACTAGCTCA------GC-GACATGT-A-GC-----C-TTCGAAGCTGTTTACATCAGATCAAAACATAA
gi|5 : tcaagttttctataatttttagacctattttggaacAAATTTGATAAA--------TGTA-T-GTCTCT--GTAACAAAACCAACACATTG----------AAACTATATTGTATATCGCAGACACAT-AG----T--C-TTCATTGTTG--------AAATC-AGATAGGAC---ATACATTGGGTACAGAAA----TAATG---ACG-TAG-TTTCTGCAT------C---ACAA------GGATGTTATCT-----------T------TCGCT--A--------G-TC-AAAGTCACTCGACATA--ATCATTATATGCTATATGTAATTTGGAATCA-ATTTGTAATCAATT-TGTAAGTTGACA---AAGTTCT-GCGGTCATTAAC-AATTA-A----CAGTCAATATTGTGCACATGCAGTAA
gi|6 : GTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAA---ATTATG---ATG-TAG-TGTCTGCAT------T---ACAAGCAAAGGGACAAAACCT-----------CAGAA-GTC--T--AAGATTGGGGTTT-GA-TTCAATAGA--TGTAATCATT----GCT--------T----ATATACAGTT-TAATGAA-------------CAGTCAAT-----------ATT----------ATG------CA----TGTGC------AGTGATTCCG-AGGTCATTATTGCAGTAAACAGCACA--TAGGAGTCATTATTGAATTTTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--AT
gi|7 : TTCA-GCAGTCGTTATTTA-GTA-ATGACCAGTCAATATTGTGCACGTGTAGTGACTCGG-AGGTCATTATTGCAGTAAACAGCACATTTTGGAGTCATTGTTGAATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAg
gi|8 : tcaatttatatagagaacaACATGT-A----TT--C-TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAA--ATTCGGTAC-AAAA---ATGATG---ACA-TTG-TGTCTGCACA---------ACAAGCAAAGGG----AATC-----------------------T--AAGATTGGGA-TTAGA-TTCACTCGA--ttat
gi|9 : cgcttgacaagataaggagtatactatctaatcTGATG-CAAAT--TGTGCACAAAAA---ATGATG---ACAATAG-T--CTGCATA-A--------CAAGCAAAGGGACAGAACCTTTGTTATCTACC-AGA-AT-TCT--AAGATTGGGC-TCTGA-TTCACTTGA--TG--cataat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC
Alignments
lowQualScore : 1 111 1 11 11 22222 11 1 1 1 22 222222 22222 222 11 111 222222 44444444444444 555555555555555555555555 222222222 44444444444 5555555555 9999999999999999999999999999999999999999 111111 1111 2222222222222 22222222222222222 111 111
lowQualScore : 7 3 3 000 0 33 33 0 55555 0 33 1 55 2 0 0 1 0 33 555555 6 2 2 0 55555 8 8 0 8 0 5 000 5 6 11 8 000 8 333333 44444444444444 99 2 888888888888888888888888 333333333 5 33333333333 3 1 55 3 2 888 888 5 5 0000000000 4 0 0 4444444444444444444444444444444444444444 5 1 4 111111 7777 9999999999999 99 0 11111111111111111 6 5 1 222 5 1 2 6 1 3 000 1 0 55
lowQualScore : . . . ... . .. .. . ..... . .. . .. . . . . . .. ...... . . . . ..... . . . . . . ... . . .. . ... . ...... .............. .. . ........................ ......... . ........... . . .. . . ... ... . . .......... . . . ........................................ . . . ...... .... ............. .. . ................. . . . ... . . . . . . ... . . ..
lowQualScore : 3 3 2 222 0 88 22 8 00000 2 88 0 00 5 0 0 0 0 88 222222 5 5 5 2 00000 0 0 8 0 8 6 000 2 7 22 0 000 0 000000 77777777777777 22 5 555555555555555555555555 555555555 7 00000000000 0 7 22 2 5 888 888 0 0 2222222222 5 1 3 7777777777777777777777777777777777777777 7 9 0 555555 0000 2222222222222 44 6 99999999999999999 3 7 9 999 7 4 2 7 0 9 000 0 4 55
consensus : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CGTACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C--TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( family-8555 ) : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CATACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C--TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|1 : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC-----TTTTTA--ATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-G-TTTTGT-GTCATTC------TAAGTTTGATAAAAT----CATACCTT-ACTTCT--TTAACGATA----------G----------AAACTAGCACG------GT-AATATGT-AGGC-CTAGCG-TTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAA---AGGATG---ACG-TAG-TGTCTGCATATATGTT---ACAAGCAAAGGGACAAAACCG-----------C-GGACGTCTTTCGAAGATTGAGGTTT-GA-TTCTCTTGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATTAT-----TTTGCAGTCAATTTCA-GCAGTCATTAAT-A-TTA-ATGACCGGTCAATATTATGCACGTGCAGTGATTCAG-AAGGCATTATTGCAGTAAACAGCGCAATTTGGAGTC---ATCGAATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|10 : CATTAATTCGG-AGGTAG--ATT-CTGTGAGCAGTGT-CTTTGAAATCATTATTGAATTTGAAATAAGGCTTCCAATCAGCCAATCATATT
gi|11 : gtattaattaatattcagttatAATGCT----TCAT--TACA-ATATA-TTTTGT-ATCATTC------TACGTCTGATAAAA-----GG--CC-T-ACCTCT--TTACAGATT----------T----------AAACTAGCTCA------GC-GACATGT-A-GC-CT
gi|13 : CATTTTGGAGTCATCGTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAAtcg
gi|14 : aCTCCCA-TTAACCAATGAGATTTGAGA--ATTt
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTG-ATT-A-------ACAAGCGAAGGAAgatgatagatgtataataaataattgtatatatg
gi|16 : TTCAAGGAAAGG-CCT-AATTCAAA-TGATTT-GTCCTCTTAAAAATA--GAATGCTG-
gi|17 : CAGTCAGCAAATCAGATTTGAGA--ATTAATAAt
gi|18 : ctcttctatgTC-T-----TTTGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGAtagag
gi|19 : tCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAA
gi|2 : tCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC-----TTTCTA--ATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-A-TTCTGTTATCATTC------TAACTTTGATAAAAAAGTCCATACT-G-ACCTTTGTTT-----TA----------G----------AAACTAGCTCG------GCCGAT-TGTCAGGCGCTAGC--TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAA---ATGACA---CCG-TAG-TGTTTGCATACA---TTTAACAAATAATGGGACAAAACCT-----------CAGAA-GTCTTT----GCTT-----------TT--------------TCATT----GCT--------TTTAAAAAC-------------ATC-T-----TTTGCAGTCACTTTCA-ACGGTCATTATT-A-TTA-ATGACTATTCAATATTGTCTACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGTATTTTGGAGTCATTATCGAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|20 : aGTCAGCCAATCAGATTTGAGA--ATTACTAAtag
gi|3 : CCGATATAGAA-ATAAATATCT-T--ATTTGTGACACGCCAC--TGATAT-AAATTCTAC-----TTCCTA--ATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-A-TATTGT-GTCATTCTACATGTAAGTTTGATAAAAGT---CATACT-TAACCTCT--TTAACG---------------------------C-----------------ACAT-T-AGGC-CTA-TCGTTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAA---ATGATG---ACG-TAGTTGCTTGCCTACA---T---GTAA-CAAAG---CAAA-----------------GGA-GTCTT-----------------GA-TTCTCTTGA--TA--GTCATT----GCT--------TTT-TAAACATATTTCT----AATT-T-----TTCGTGGTCAATTTCAGGCGGTCATTATT---TTATATGACCGGTCAATATTGTACACGTGCAGTGATTCGGTAGGTCATTATTACAGTAAACAGCGCATTTTGGAGTCATTATCAAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACtacta
gi|4 : aATACAT-TGTAATTTTAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATACT---AG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCC-AA-TGATTTTGTCCTTGTAAAAAT----AATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAAA------GT-CC-T-ACCTCT--TTAAAGATA----------GAAAGACATTCAAACTAGCTCA------GC-GACATGT-A-GC-----C--TTCGAAGCTGTTTACATCAGATCAAAACATAA
gi|5 : tcaagttttctataatttttagacctattttggaacAAATTTGATAAA------TGTA---T-GTCTCT--GTAACAAAACCAACACATTG----------AAACTATATTGTATATCGCAGACACAT-AG----T--C--TTCATTGTTG--------AAATC-AGATAGGAC---ATACATTGGGTACAGAAA----TAATG---ACG-TAG-TTTCTGCAT------C---ACAA------GGATGTTATCT-----------T------TCGCT--A--------G-TC-AAAGTCACTCGACATA--ATCATTATATGCTATATGTAATTTGGAATCA-ATTTGTAATCAATT-TGTAAGTTGACA---AAGTTCT-GCGGTCATTAAC-AATTA-A----CAGTCAATATTGTGCACATGCAGTAA
gi|6 : GTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAA---ATTATG---ATG-TAG-TGTCTGCAT------T---ACAAGCAAAGGGACAAAACCT-----------CAGAA-GTC--T--AAGATTGGGGTTT-GA-TTCAATAGA--TGTAATCATT----GCT--------T----ATATACAGTT-TAATGAA-------------CAGTCAAT-----------ATT----------ATG------CA----TGTGC------AGTGATTCCG-AGGTCATTATTGCAGTAAACAGCACA--TAGGAGTCATTATTGAATTTTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--AT
gi|7 : TTCA-GCAGTCGTTATTTA-GTA-ATGACCAGTCAATATTGTGCACGTGTAGTGACTCGG-AGGTCATTATTGCAGTAAACAGCACATTTTGGAGTCATTGTTGAATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAg
gi|8 : tcaatttatatagagaacaACATGT-A-----TT-C--TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAA--ATTCGGTAC-AAAA---ATGATG---ACA-TTG-TGTCTGCACA---------ACAAGCAAAGGG----AATC-----------------------T--AAGATTGGGA-TTAGA-TTCACTCGA--ttat
gi|9 : cgcttgacaagataaggagtatactatctaatcTGATG-CAAAT--TGTGCACAAAAA---ATGATG---ACAATAG-T--CTGCATA-A--------CAAGCAAAGGGACAGAACCTTTGTTATCTACC-AGA-AT-TCT--AAGATTGGGC-TCTGA-TTCACTTGA--TG--cataat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC
Alignments
lowQualScore : 1 111 1 11 11 22222 11 1 1 1 22 222222 22222 222 11 111 222222 44444444444444 555555555555555555555555 222222222 44444444444 5555555555 9999999999999999999999999999999999999999 111111 1111 2222222222222 22222222222222222 111 111
lowQualScore : 7 3 3 000 0 33 33 0 55555 0 33 1 55 2 0 0 1 0 33 555555 6 2 2 0 55555 8 8 0 8 0 5 000 5 6 11 8 000 8 333333 44444444444444 99 2 888888888888888888888888 333333333 5 33333333333 3 1 55 3 2 888 888 5 5 0000000000 4 0 0 4444444444444444444444444444444444444444 5 1 4 111111 7777 9999999999999 99 0 11111111111111111 6 5 1 222 5 1 2 6 1 3 000 1 0 55
lowQualScore : . . . ... . .. .. . ..... . .. . .. . . . . . .. ...... . . . . ..... . . . . . . ... . . .. . ... . ...... .............. .. . ........................ ......... . ........... . . .. . . ... ... . . .......... . . . ........................................ . . . ...... .... ............. .. . ................. . . . ... . . . . . . ... . . ..
lowQualScore : 3 3 2 222 0 88 22 8 00000 2 88 0 00 5 0 0 0 0 88 222222 5 5 5 2 00000 0 0 8 0 8 6 000 2 7 22 0 000 0 000000 22222222222222 22 5 555555555555555555555555 555555555 7 00000000000 0 7 22 2 5 888 888 0 0 2222222222 5 1 3 7777777777777777777777777777777777777777 7 9 0 555555 0000 2222222222222 44 6 99999999999999999 3 7 9 999 7 4 2 7 0 9 000 0 4 55
consensus : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CGTACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C--TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( family-8555 ) : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CGTACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C--TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|1 : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC-----TTTTTA--ATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-G-TTTTGT-GTCATTC------TAAGTTTGATAAAAT----CATACCTT-ACTTCT--TTAACGATA----------G----------AAACTAGCACG------GT-AATATGT-AGGC-CTAGCG-TTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAA---AGGATG---ACG-TAG-TGTCTGCATATATGTT---ACAAGCAAAGGGACAAAACCG-----------C-GGACGTCTTTCGAAGATTGAGGTTT-GA-TTCTCTTGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATTAT-----TTTGCAGTCAATTTCA-GCAGTCATTAAT-A-TTA-ATGACCGGTCAATATTATGCACGTGCAGTGATTCAG-AAGGCATTATTGCAGTAAACAGCGCAATTTGGAGTC---ATCGAATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|10 : CATTAATTCGG-AGGTAG--ATT-CTGTGAGCAGTGT-CTTTGAAATCATTATTGAATTTGAAATAAGGCTTCCAATCAGCCAATCATATT
gi|11 : gtattaattaatattcagttatAATGCT----TCAT--TACA-ATATA-TTTTGT-ATCATTC------TACGTCTGATAAAA-----GG--CC-T-ACCTCT--TTACAGATT----------T----------AAACTAGCTCA------GC-GACATGT-A-GC-CT
gi|13 : CATTTTGGAGTCATCGTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAAtcg
gi|14 : aCTCCCA-TTAACCAATGAGATTTGAGA--ATTt
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTG-ATT-A-------ACAAGCGAAGGAAgatgatagatgtataataaataattgtatatatg
gi|16 : TTCAAGGAAAGG-CCT-AATTCAAA-TGATTT-GTCCTCTTAAAAATA--GAATGCTG-
gi|17 : CAGTCAGCAAATCAGATTTGAGA--ATTAATAAt
gi|18 : ctcttctatgTC-T-----TTTGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGAtagag
gi|19 : tCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAA
gi|2 : tCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC-----TTTCTA--ATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-A-TTCTGTTATCATTC------TAACTTTGATAAAAAAGTCCATACT-G-ACCTTTGTTT-----TA----------G----------AAACTAGCTCG------GCCGAT-TGTCAGGCGCTAGC--TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAA---ATGACA---CCG-TAG-TGTTTGCATACA---TTTAACAAATAATGGGACAAAACCT-----------CAGAA-GTCTTT----GCTT-----------TT--------------TCATT----GCT--------TTTAAAAAC-------------ATC-T-----TTTGCAGTCACTTTCA-ACGGTCATTATT-A-TTA-ATGACTATTCAATATTGTCTACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGTATTTTGGAGTCATTATCGAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|20 : aGTCAGCCAATCAGATTTGAGA--ATTACTAAtag
gi|3 : CCGATATAGAA-ATAAATATCT-T--ATTTGTGACACGCCAC--TGATAT-AAATTCTAC-----TTCCTA--ATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-A-TATTGT-GTCATTCTACATGTAAGTTTGATAAAAGT---CATACT-TAACCTCT--TTAACG---------------------------C-----------------ACAT-T-AGGC-CTA-TCGTTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAA---ATGATG---ACG-TAGTTGCTTGCCTACA---T---GTAA-CAAAG---CAAA-----------------GGA-GTCTT-----------------GA-TTCTCTTGA--TA--GTCATT----GCT--------TTT-TAAACATATTTCT----AATT-T-----TTCGTGGTCAATTTCAGGCGGTCATTATT---TTATATGACCGGTCAATATTGTACACGTGCAGTGATTCGGTAGGTCATTATTACAGTAAACAGCGCATTTTGGAGTCATTATCAAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACtacta
gi|4 : aATACAT-TGTAATTTTAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATACT---AG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCC-AA-TGATTTTGTCCTTGTAAAAAT----AATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAAA------GT-CC-T-ACCTCT--TTAAAGATA----------GAAAGACATTCAAACTAGCTCA------GC-GACATGT-A-GC-----C--TTCGAAGCTGTTTACATCAGATCAAAACATAA
gi|5 : tcaagttttctataatttttagacctattttggaacAAATTTGATAAA------TGTA---T-GTCTCT--GTAACAAAACCAACACATTG----------AAACTATATTGTATATCGCAGACACAT-AG----T--C--TTCATTGTTG--------AAATC-AGATAGGAC---ATACATTGGGTACAGAAA----TAATG---ACG-TAG-TTTCTGCAT------C---ACAA------GGATGTTATCT-----------T------TCGCT--A--------G-TC-AAAGTCACTCGACATA--ATCATTATATGCTATATGTAATTTGGAATCA-ATTTGTAATCAATT-TGTAAGTTGACA---AAGTTCT-GCGGTCATTAAC-AATTA-A----CAGTCAATATTGTGCACATGCAGTAA
gi|6 : GTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAA---ATTATG---ATG-TAG-TGTCTGCAT------T---ACAAGCAAAGGGACAAAACCT-----------CAGAA-GTC--T--AAGATTGGGGTTT-GA-TTCAATAGA--TGTAATCATT----GCT--------T----ATATACAGTT-TAATGAA-------------CAGTCAAT-----------ATT----------ATG------CA----TGTGC------AGTGATTCCG-AGGTCATTATTGCAGTAAACAGCACA--TAGGAGTCATTATTGAATTTTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--AT
gi|7 : TTCA-GCAGTCGTTATTTA-GTA-ATGACCAGTCAATATTGTGCACGTGTAGTGACTCGG-AGGTCATTATTGCAGTAAACAGCACATTTTGGAGTCATTGTTGAATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAg
gi|8 : tcaatttatatagagaacaACATGT-A-----TT-C--TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAA--ATTCGGTAC-AAAA---ATGATG---ACA-TTG-TGTCTGCACA---------ACAAGCAAAGGG----AATC-----------------------T--AAGATTGGGA-TTAGA-TTCACTCGA--ttat
gi|9 : cgcttgacaagataaggagtatactatctaatcTGATG-CAAAT--TGTGCACAAAAA---ATGATG---ACAATAG-T--CTGCATA-A--------CAAGCAAAGGGACAGAACCTTTGTTATCTACC-AGA-AT-TCT--AAGATTGGGC-TCTGA-TTCACTTGA--TG--cataat
blockSeqs : T G A TT C AC GA CGTCT TC C GC C G G A G GA AGTTT A G C TGTCA G G A T GAG C T AA G TA T TACATG AAGTCCATACTG GT A ATAGAAAGACATTC TATATCGCA C GGCGCTAGC C G AC A G AAG TAT A T ACATTTA G TTTGTTATCTACCAGAATTCTAAGATTGGGCTCT A T T CATA ATAT ATATGTAATTTGG AT GTAATCAATTTGTAAG T G T AA T A A T G C TAA G AT
blockSeqs : . . A TG . . A . . C GA C . . C . T CG G G C . . . . T A C . AA . AT . . GTCATACTTA . C AAACCAACACATTG GCC . GGCCTATCG C C G A G . . . . ACAT A TCAGAAGTCTAAGATTGGGGTTT . A C TGTA . TTTAA AC CTAATTT T . T TA . A G . A T . A .
blockSeqs : A T . . . . . A . . . . G . . C . . . . . . . G T C . . . A . . GGCCT . A ATTT GC . GCC A C G A G . . . . TA G TCAGAAGTCTTTGCTT . A A TA . TTTT A TAATGAA C . T A . A A . G T . T .
blockSeqs : . . . . . A . . . A . . GTCCT . C TAG GC . GTC C T G A G . . . . AA G TAAGATTGGGATTA . A C TG . T . ATCT G . A A . A A . G T . T .
blockSeqs : . . TGTAT . . . . . TTC T T G A C . . . . C G TTTCGCTAGTC . A T . . . T . . . . . . T . A .
blockSeqs : . . C G . G . . . . T . GGAGTCTT . . . . . . . . . . A .
blockSeqs : . . . . . . . A . .
blockSeqs : .
blockSeqs : .
blockSeqCons : GGCCT********* ATTG******************** GTC******** A********* TCAGAAGTCTAAGATTGGGTTT****************** TTT********** TAATNT***********
originalCons : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAA-----CGTACC-T-ACCTCT--TTAACGATA----------G----------AAACTAGCTCG------GC-GACATGT-AGGC-CTA-C--TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA-A---T---ACAAGCAAAGGGACAAAACCT-----------C-GGA-GTCTTT--AAGATTGGGG-TC-GA-TTCACTCGA--TG--ATCATT----GCT--------TTTAAAAACATATTTCTAATCAATT-T-----TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
finalCons : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-A-TTTTGT-ATCATTC------TAAGTTTGATAAAAGGCCT---------ACCTCT--TTAACGATTG--------------------AAACTAGCTCG------GC-GACATGT-AGTC--------TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAA---ATGATG---ACG-TAG-TGTCTGCATA---------ACAAGCAAAGGGACAAAACCTCAGAAGTCTAAGATTGGGTTT------------------GA-TTCACTCGA--TG--ATCATT----GCTTTT----------AAACATATTTTAATNT-----------TTCGCAGTCAATTTCA-GCGGTCATTATT-A-TTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC
Alignments
lowQualScore : 1 111 1 11 11 22222 11 1 1 1 22 222222 22222 11 11 222222 333333333333333 66666666666666666666666666666 333333333333333333333333333333333 22222222222222 33333333333333 33333333333333333 1111 333333333333333333333333333333333333 1111 11 111
lowQualScore : 7 3 3 000 0 33 33 0 55555 0 33 1 55 2 0 0 1 0 33 555555 6 2 2 0 55555 8 8 88 0 5 11 5 6 11 8 8 8 8 333333 444444444444444 99 2 11111111111111111111111111111 2 222222222222222222222222222222222 3 1 55 3 2 888 888 5 5 55555555555555 888 0 0 55 66666666666666 0 22222222222222222 0 1 4 77 99 7777 8 444444444444444444444444444444444444 6 1 4444 5 5 00 5 1 2 1 6 1 3 000 1 0 55
lowQualScore : . . . ... . .. .. . ..... . .. . .. . . . . . .. ...... . . . . ..... . . .. . . .. . . .. . . . . ...... ............... .. . ............................. . ................................. . . .. . . ... ... . . .............. ... . . .. .............. . ................. . . . .. .. .... . .................................... . . .... . . .. . . . . . . . ... . . ..
lowQualScore : 3 3 2 222 0 88 22 8 00000 2 88 0 00 5 0 0 0 0 88 222222 5 5 5 2 00000 0 0 88 8 6 00 2 7 22 0 0 0 0 000000 888888888888888 22 5 88888888888888888888888888888 5 444444444444444444444444444444444 0 7 22 2 5 888 888 0 0 00000000000000 888 2 1 44 33333333333333 3 33333333333333333 7 9 0 99 22 0000 0 444444444444444444444444444444444444 3 0 2222 7 7 77 7 4 2 0 7 0 9 000 0 4 55
consensus : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-ATTTT-GT-ATCATTC------TAAGTTTGATAAAA----GTC---C-T--ACC--TCTTTAACG---A----------T----------T--GAAACTAGCTCG------GC-GA----CATG---TAGCC------TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAAA---TGATG---ACG-TAG-TGTCTGCA------TA------ACA---AGCAAAGGGACAAAACC--T-----------CGGAAGTCT----AAGATT-G-GG-TTTGATTCACTCG--ATG--ATCAT----TGC-T--------TTT--AAACATATTTCTAA-----T--NTTTTGCAGTC----AATTTCA-GCGGTCATT-ATT-ATTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
Reference ( family-8555 ) : CCGATATAGAA-ATAAATATCT-TTTATTTGTGACACGC-AC--TGATAT-AAATTCTAC-----TTTCTA--ATTNTACTGCCAGCG-C-CAGNTC-TA--CCATG----C-ACGAAGGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGCTG-GTTCATAATACA-ATA-ATTTT-GT-ATCATTC------TAAGTTTGATAAAA----GGC---C-T--ACC--TCTTTAACG---A----------T----------T--GAAACTAGCTCG------GC-GA----CATG---TAGTC------TTCGTAGTTGTTTACAGCAGATCCAGACATGACG-CAAATATTGGGCACAAAAAA---TGATG---ACG-TAG-TGTCTGCA------TA------ACA---AGCAAAGGGACAAAACC--T-----------CAGAAGTCT----AAGATT-G-GG-TTTGATTCACTCG--ATG--ATCAT----TGC-T--------TTT--AAACATATTT-TAA-----T--NTTTCGCAGTC----AATTTCA-GCGGTCATT-ATT-ATTA-ATGACCGGTCAATATTGTGCACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAACAGCGCATTTTGGAGTCATTATCGAATTTTAAA---GNCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|1 : CCGATATAGAA-ATAA---TCTCTTTATTTGTGACACGC-AT--TGATAT-AAGTTCTAC-----TTTTTA--ATTATATTGCCAGCG-C-CAGCTC-TA--CCATG----C-ACGAAGGACTGTGATCCGACTGATTGAATCA-----AACATTCAAAGAAAAT-CCT-AATCCAAA-CGATTTTGTCCTCTTAAAAATA--GAATGTTG-ATTCATAATACA-ATA-GTTTT-GT-GTCATTC------TAAGTTTGATAAAATCATACC---T-T--ACT--TCTTTAACG---A----------T----------A--GAAACTAGCACG------GT-AA----TATG---TAGGCCTAGCGTTCGTAGTTGTTTCCAGCAGATCCAGAAATGACA-CAAATATTCGGCACGAAAAA---GGATG---ACG-TAG-TGTCTGCA------TATATGTTACA---AGCAAAGGGACAAAACC--G-----------CGGACGTCTTTCGAAGATT-GAGG-TTTGATTCTCTTG--ATG--ATCAT----TGC-T--------TTTAAAAACATATTTCTAATCAATT--ATTTTGCAGTC----AATTTCA-GCAGTCATT-AAT-ATTA-ATGACCGGTCAATATTATGCACGTGCAGTGATTCAG-AAGGCATTATTGCAGTAAACAGCGCAATTTGGAGTC---ATCGAATTTTAAA---GTCTTCCTGTCAGCCAGTCAGATTTTAGA--ATTACTAA
gi|10 : CATTAATTCGG-AGGTAG--ATT-CTGTGAGCAGTGT-CTTTGAAATCATTATTGAATTTGAAATAAGGCTTCCAATCAGCCAATCATATT
gi|11 : gtattaattaatattcagttatAATGCT----TCAT--TACA-ATATATTTT-GT-ATCATTC------TACGTCTGATAAAA----GGC---C-T--ACC--TCTTTACAG---A----------T----------T--TAAACTAGCTCA------GC-GA----CATG---TAGCC------TTCG
gi|13 : CATTTTGGAGTCATCGTTGAATTCTAAA---GACTTCCCATCAGCCAATCAGAATTGAGA--ATTAATAA
gi|14 : aCTCCCA-TTAACCAATGAGATTTGAGA--ATTt
gi|15 : GATG-CAAAT--TGTGCACAAAAAAAGATGATGTATACG-TAG-TGTCTGAT------TA------ACA---AGCGAAGGAAgatgatagatgtataataaataattgtatatatg
gi|16 : TTCAAGGAAAGG-CCT-AATTCAAA-TGATTT-GTCCTCTTAAAAATA--GAATGCTG-
gi|17 : CAGTCAGCAAATCAGATTTGAGA--ATTAATAAt
gi|18 : ctcttctatg-----T--CTTTTGCAGTC----AATTTCA-GCGGTCATT-ATT-ATTA-ATGAtagag
gi|19 : tCTTCCAGTCAGCCAATCAGATTTGAGAATATTACTAA
gi|2 : tCCGA-ATAGAAGATAAATATCT-TTTATATGTGACACGC-AT--TGATATGAAATTCTAC-----TTTCTA--ATTCTACTGCCAGCGGCGCAGATCGTAT-CCGTG----CGACAAAG-ATTGTGTTTCGACTGATCGAATCATGTCAAATTTTCAAAGAAAGGGCCTGAATCCAAAACGATTTTGTCCTCTTAAAAATGAGGAATGCTGTGTTCATAATACAGATA-ATTCT-GTTATCATTC------TAACTTTGATAAAAAA--GTC---CAT--ACTGACCTTT---G---T----------T----------TTAGAAACTAGCTCG------GCCGATTGTCAGGCGCTAG-C------TTTGTAGTTGTTTACAGCAGATCCAGAGATGACG-CAAATATTGGGCACAGAAAA---TGACA---CCG-TAG-TGTTTGCATACATTTA------ACA---AATAATGGGACAAAACC--T-----------CAGAAGTCT--------TT-G-CT-TTT------------------TCAT----TGC-T--------TTT--AAAAAC-------A-----T--CTTTTGCAGTC----ACTTTCA-ACGGTCATT-ATT-ATTA-ATGACTATTCAATATTGTCTACGTGCAGTGATTCGG-AGGTCATTATTGCAGTAAGCAGCGTATTTTGGAGTCATTATCGAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACTAA
gi|20 : aGTCAGCCAATCAGATTTGAGA--ATTACTAAtag
gi|3 : CCGATATAGAA-ATAAATATCT-T--ATTTGTGACACGCCAC--TGATAT-AAATTCTAC-----TTCCTA--ATTCTACTGACAGCG-C-CAGCCC-TA--CCATG----C-AT--ATGATTGTGATCCGACTGATCGAATCA-----AACATTCAAAGAAAGG-CCT-AATCTAAA-TTATTCTGTGCTT---AAAATT--GAATGATG-GTTCATAATACA-ATG-ATATT-GT-GTCATTCTACATGTAAGTTTGATAAAA----GTCATAC-TTAACC--TCTTTAACGCACA----------T----------T--AGGCCTA--TCG---------------------------------TTCGTAGTTGTTAACAGCAGATCCAGACATGACACCAAATATT-GACACAGGAAA---TGATG---ACG-TAGTTGCTTGCC------T-------ACATGTAACAAAG---CAA-------------------AGGAGTC------------------TTGATTCTCTTG--ATA--GTCAT----TGCTT--------TTT--AAACATATTTCTAA-----T--TTTTCGTGGTC----AATTTCAGGCGGTCATT-ATT--TTATATGACCGGTCAATATTGTACACGTGCAGTGATTCGGTAGGTCATTATTACAGTAAACAGCGCATTTTGGAGTCATTATCAAATTTTAAA---GTCTTCCAGTCAGCCAATCAGATTTGAGA--ATTACtacta
gi|4 : aATACAT-TGTAATTTTAACACGC-ACACTGATAT----TTTTACCGTCTTTTGTGTCATTATACT---AG-G-C-CTGGTT-TAGATCACGAGTTT-ACGAGGGATTGTGATC---------AAATCA-----AACATTCAAAGAAAGG-CCT-AATCCAA--TGATTTTGTCCTTGTAAAAATA----ATA--G-GTTTAT--TACA-ATA-ATTTTTAT-ATCATTC------TACATCTGATAAAA----GTC---C-T--ACC--TCTTTAAAG---A----------TAGAAAGACATT--CAAACTAGCTCA------GC-GA----CATG---TAGCC------TTCGAAGCTGTTTACATCAGATCAAAACATAA
gi|5 : tcaagttttctataatttttagacctattttggaacAAATTTGATAAA-----TGT---A-T--GTC--TCTGTAACA---AAACCAACACAT----------T--GAAACTATATTGTATATCGCAGA----CACA---TAGTC------TTCATTGTTG--------AAATC-AGATAGGAC---ATACATTGGGTACAGAAA----TAATG---ACG-TAG-TTTCTGCA------TC------ACA---A------GGATGTTATCTTT-----------CGCTAGTCA----AAG---------------TCACTCGACATA--ATCATTATATGC-TATATGTAATTTGGAATCA-ATTTGTAA-----TCAATTTGTAAGTTGACAAAGTTCT-GCGGTCATTAACA-ATTA-A----CAGTCAATATTGTGCACATGCAGTAA
gi|6 : GTTGTTTACAACAAATGCAGATATGACG-CAAATATTGGGTCTAAAAAA---TTATG---ATG-TAG-TGTCTGCA------TT------ACA---AGCAAAGGGACAAAACC--T-----------CAGAAGTCT----AAGATTGG-GG-TTTGATTCAATAG--ATGTAATCAT----TGC-T--------TAT--ATAC--AGTT-TAA-----T--G--------------------A-ACAGTCAAT-ATT------ATG------CA----TGTG------CAGTGATTCCG-AGGTCATTATTGCAGTAAACAGCACA--TAGGAGTCATTATTGAATTTTAAA---GACTCCCGATCAGCCAATCAAATTTGAGA--AT
gi|7 : TTCA-GCAGTCGTT-ATTTAGTA-ATGACCAGTCAATATTGTGCACGTGTAGTGACTCGG-AGGTCATTATTGCAGTAAACAGCACATTTTGGAGTCATTGTTGAATTTCAAA---GACTTCCAATCAGCCAAACAGATTTGAGA--ATTAATAg
gi|8 : tcaatttatatagagaacaA----CATG---TATTC------TTCGTAGTTGTTTACAGCAGATCTAGACGTGACG-CAA--ATTCGGTAC-AAAAA---TGATG---ACA-TTG-TGTCTGCA------CA------ACA---AGCAAAGGG--------------------------AATCT----AAGATT-G-GGATTAGATTCACTCG--Attat
gi|9 : cgcttgacaagataaggagtatactatctaatcTGATG-CAAAT--TGTGCACAAAAAA---TGATG---ACAATAG-T--CTGCA------TA------ACA---AGCAAAGGGACAGAACC--TTTGTTATCTACCAGAATTCT----AAGATT-G-GGCTCTGATTCACTTG--ATG--cataat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCAAGTTTCCTAAATATCATTTCTAGACTTATTTTGAAAAAAAATGTAACACGCACTGATGTTCTACCGTCTTTATGTGTCATTCGACTAGACC