lowQualScore : 333333333333 2222222 1 1 1 111 1 11 11 22 11 1 222222 555555555555555555 99999999999999999999999999 111 222 44444 1 11 111
lowQualScore : 999999999999 8 8 2222222 8 0 0 0 1 8 8 444 1 0 33 0 8 8 5 11 99 22 4 5 5 5 5 66 77 5 1 0 77 2 222222 888 5 33 66 6 666666666666666666 4 6 555 33333333333333333333333333 77 000 5 666 5 111 5 5 5 9 8 4 4 4 2 1 55555 6666 4 4 777 1 8 4 4 0 4 777 4 88 66 4 55 5 777 55 333
lowQualScore : ............ . . ....... . . . . . . . ... . . .. . . . . .. .. .. . . . . . .. .. . . . .. . ...... ... . .. .. . .................. . . ... .......................... .. ... . ... . ... . . . . . . . . . . ..... .... . . ... . . . . . . ... . .. .. . .. . ... .. ...
lowQualScore : 444444444444 0 0 0000000 0 0 0 8 8 0 0 000 4 0 88 8 0 0 6 00 22 33 3 0 0 0 0 66 99 7 7 7 99 0 666666 666 7 99 33 7 222222222222222222 0 0 999 77777777777777777777777777 99 000 7 111 7 111 0 0 0 0 9 4 4 4 0 8 77777 7777 4 4 888 0 9 4 0 7 0 000 0 11 55 0 55 7 888 11 111
consensus : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTTATTTCAAGC-GTCT-AA---ATAAAAACC-TCCT--CCTTTTGGCTAGTC-A-AGATTATTATA--TTGCTAGA--CTTAA-GTGTGTGACCCG-A-AT-G-AAAATA-AT--G-TGGAACCAAAGA--TATATTANTTT--GGGCGATGTT-TAAA-ATAAAT-TATTG-TGGTGGACAGA-TT-ATTATA--AA--GATGTTNGTCGTTTGAAAGA-T-ATTTTTATTT------GGGGG--AT--ATAATTATAA--TTT---G-G-T-A-TCT--GAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TG-CTGGGATATA--TATAATAAT--AATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
Reference ( gi|3 ) : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTTAATTCAAGC-GTCT-AA---ATAAAAACC-TCCT--CCTTTTGGCTAGTC-A-AGATTATTATA--TTGCTAGA--CTTAATGTGTGTGACCCG-A-AT-G-AAAATG-AT--G-TGGAACCAAAGA--TATATTAGTCT--GGGCGATGTT-TAAA-ATAGAT-TATTG-TGGTGGACAGATTTAATTATA--AA--GATGTTGGTCATTTGAAAGA-T-ATTTTTATTTCATTTTGGGGG--AT--ATAATTATAA--TTT---G-G-T-A-TCA--GAAAA-TCGG-TA-CTAGATTACTAT-T-AT-TG-TTGGGATATACATGTAATAAT--AATGTC-GGCAAATAGGG-TTTT---TGGTCTA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--TGGCTTTCCA
gi|1 : GTCCTAAAATACCAGGAGACGTTCCAGA-TTATAA-TTTTAT--GTGAATTCTGA-ATCAA-AGTAACGTTTTTATTTCAAGCGGTCTAAA---ATAAAAAAT-TCCT--CCTTTTGGC-AGTC-A-AGATTATTATAATTTGCTAGAACCTTAA--TGTGTGACCCG-A-ATAG-AAAATA-AT--G-TGGAACCAAAGA--TATA-TATTTG--GGGCGATGTT-T-AA-ATAAAC-GATTG-TGGTGGACAGATTT-ATTATA--AAATGATGTTGGTCGTTTGAAAAA-G-A----TATTTTATTT--GGGG--ATGAATAATTATAA--TTT---G-G-T-A-TCT--TAAAA-TCGG-T---TATGTTATTAT-CAAT-TGCTTGGGG-----ATATAATAA---AATGTC-GGCAAATAGGA-TTTTTTGTGGTCCA-GA--TA-TTATTTTA-GAGTGATTT-TAC-ATAGT--GAAATTAAAT-AATA--ATGT-GG---GATACG-CTAATCGGCTTTC
gi|7 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtctatatgtcaatacgattcaacaaaacgtttcatttcagcgtaaataaaaaattcaatcccggGTCCTAAAA-T---------GTTCCAGA-TTATCA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTTATTTCAAGC-GTCT-AA---ATAAAAATC-TCCT--CCTTTTGGCTAGTC-A-AGATTATTATA--TTGCTAGA--CTTGA--TGTGTGACCCG-A-AT-G-AAAATA-AT--G-TGGAAC---AAA--TA-ATGAGT-----AGCATTGT-----A-ATAAATGTATT
gi|2 : agtaggttacgtgattttcctatatattttaacgcatgaaattattgtcaatccaattcaacaaaacgtttcattccaagcgtctaaataaaaatctgTCCTAAAA-A----------TTCCAGAATTATTA-T----CTGGTGAA-TCTGAATTCAACAGTAACGTTTTTGATTTCAAC-GTCT-AATAAAAAAAAACT-TCCCTCCCTTTCTGCTAGTCCA-AGATTATTATA--TTGCTAGA--ACTAATGT-T-TGACC-----GT-G-AAAAT--AT--GCTGGTACAAAAGACTTA-ATTA-TTT--GGGCGATGTT-TAAA-ATAAAT-GATTG-TGGTGGACAGCATTAATTATA--AA--GATGTTGGTCGTT--GAAGA-T-A-----AT----------------T--ATAATTATAA--TTT---GTG-T-A-TCT--GAAGA-TCTG-TA-CTAGATTATTATCT-AT-TG-CTGGGATATA-ATG--ATAAT--G--GTC-GGC-AATAGGGATTTT---TGGTC-A-GAT-TA-TTA--TTAGG---CATTT-TAA-ACAATAGGAAAAATAATAAATA--ATGTGGG---GATACG-CTA--GCGCTTT
gi|5 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaattattgtcaatccgatcaaacaaacgtcttcattatcaaggcgtaaataaaatccgcccAAA-A---------ATTCCAGA-TTATTATT----T--GTGAA-T
gi|17 : cccctccccccccccgccaccccccccccccccctccttttgtattgaactgcaatgtcatccacctttttcttaagagatatattaggataatgagctgttgaacgtgggtttttacaatgagatgtatatgtacggtggcgcgttacaatagaaaaatattattttatggaaaatttaaacatcgatatccacgactatttttccgcattataaatcatcttctttaattcgagtcaacaaattttcattccggagtctataagaaatacctccttccA-A---------GTTCCAGA-TTATTA-T----T--GGAAA-TCTGC-TTCAA-AGTAACGT
gi|17 : aaaacgtttcatttcaagcatgtaaataaaaactAACGTTTC-ATTTCAAGC-ATGT-AA---ATAAAAAC
gi|15 : aaTTGTTATTTCAAGC-GTCT-AA---ATAAAAATCGTGTT--CTTTTTGGCTAGTC-A-AGATTCTTATA--ATGCTAGA--CTTAA--TGTGTGACCTG-A-AT-G-AAAtaagttccagattattattggaaatctgcttcaaagtaacgt
gi|11 : GCTAATA-ATAGATT--------TTTCTA-A--CTTAATGTGTG--ACCCGTA-AT-GGAAAATACAT--A-TGGA-CCAA-GA--TA-ATTA-TCTTTGGGCGATGTT--AAA-AT-GAA-TATTG-TGGTGGAC----------------A--AATGTTTGTCGTTTGAAAGA-TAATTTTTA
gi|4 : AGA--CTTGAAGTGT-TGACCCG-ACAT-G-AAAATA-ATATG-TGGATCCAAAGA--TATATTACTTT--GGGCGATGTTCTAAAGATGAAA-TATTGCTGGTGCGCACA----------------GATGTTTGTCGTTTGAAAGAAT-ATTTTTACTT-----TGGGGGCGAT--ATAATTATAA--CTTCTTG-G-T-A-TCT--GAAAA-TCGGGTA-CTAGATTCCAAT-T-ATATG-TTGG-----AC-TATAATAATCAAGTGTC-GGCAAATAGGG-TTCT---TG-TCCACGATATA-TC--TTTA-G---CATTTATATTATAGT--GAAAAATAAT-AATAACATGTCGGCGCGATACG-TTA--CGGCTTTCCAgggg
gi|6 : TGTGTGACCCG-A-AT-G-AAAATA-AT--G-TGGAACCAGAGA--CATATTATTTT--GGGCGCCGTT-TAAA-ATAAAT-TATTG-TGGTGGACA------ATCAGGCCAG--AATATTAGTTGTTTGAAAGA-T-ATTTTTATTT-----TGGGGG--AT--ATGAATATAA--TTT---G-G-A-A-CTACTGAAAA-TCGG-TA-C-AAATTA---T-T-AT-TG-CTACGATATACATGTAATAAT-----GTC-AGCCAATAAGG-TTTT---TGGTCCA-GAT-TA-TAATTTTA-G---CAATT-TAA-ATAAT--GAAAAATAGT-CATC--CTGTGGG---GATACC-TTA--CGGCTTTCCA
gi|8 : CG-A-AT-G-AAAATA-AT--G-TGGAACCAAAGA--TATATTAATTT--GGGCGATGTT-TAAA-ATAAAT-TATTG-TGGTGGACAGATTTAATTATA--AA--AATGTTAGTCGTTTGAAAGA-T-AT-------------------------ATAAATATAA--GTT---G-G-T-A-TCT--GAAAA-TCGG-TA-CTAGATTATTGT-T-AT-TG-CTGGGATATA---ATAATAAT--AATGTC-GGCAAATGGAA-ATTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-AAAGT--GAAAAATGAT-AATG--ATGTGGG---GATACG-TTA--CGGCTTTCCt
gi|9 : TAGTCGTTTGAAAGA-T-ATTTTTATTT------GGGGG--AT---TAATCATA----TT---G-GAT-AATCT--GAA---TCGG-TAACT-GTTAATTATCT-AT-TG-CTGGGGAATA----TAATAAT--AATGTC-GGCAAATTGGA-TTTT---TGGTCCAAGAT-TC-TTATTTTA-G---C-TTT-TAT-ATAATAGGAAAAATAAT-AATA--ATGTAGG---GATACG-TTA--CGGCTTTCCA
gi|10 : ATAAATTTT---G-G-TTA-TCT--GAAAAATC---TA-CTAGATTAATAT-T-AT--G-TTGGGATATA------ATAAT--AATGTCTGGCAAATAGGG-TTTT---T-GTCCA--AT-TATTTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACGTTTA--CGGCTTTCCAt
gi|14 : ttaAAA-TCGG-TA-CTAGATTATTAT-T-AT-TA-TTGGGATA------TAATAAT--GATGTC-GGCAAATATGG-ATTT---TGGTCAA-G--------------------ATTT-TAC-ATAGT--GAAAAATAAT-AATA--ATGTt
gi|12 : TAGATTATTAT-T-AT-TG-TTGGGATATA------ATAAT--AATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--CGGCTTTCCA
gi|18 : -TTATTG-A-G---CATTT-TA--ATAGTTTGAAAAATAAT-AATG--ATGT--G---GATAC--TTA--CGGCTTTCCA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CCCCCCCCCCTCCATTGGACTGGACTAGAGTATCATAGAACTTTGTACAGTGTCATTCATACCCCTTTTTGAAAGAGATGGATATAGGGATATTGAGGCGTGT
Unaligned ( gi|16 ): TATAGAACTGCAGTGTCATCCATACCCCTTTTCTTAAGAGATGATATTAGGGATAATGAGGCTTGTGAACGGCTGTACAATTGGA
Unaligned ( gi|19 ): ATGATGATGATGTGAGGAGAAGTTTCGTCTCTCAA
Alignments
lowQualScore : 222222222222 1111 1 11 11111 333 1111111111 2222222222 22222222 11111 111 11111111 11
lowQualScore : 999999999999 6 4 3333 66 0 4 5 5 0 99 4 4 4 1 4 777 0 0 5 66 1 33 5 1 44444 77 0 66 5 5 666 66 4 4 4 4 4 66 4 2 1 66 7 99 2 4 4 7777777777 5 6666666666 999 1 66 5 5 33 77777777 11111 1 66 888 5 333 5 5 4 4 4 8 4 4 4 99999999 0 4 4 777 8 4 3 3 666 3 66 55 3 55 4 777 4 55
lowQualScore : ............ . . .... .. . . . . . .. . . . . . ... . . . .. . .. . . ..... .. . .. . . ... .. . . . . . .. . . . .. . .. . . . .......... . .......... ... . .. . . .. ........ ..... . .. ... . ... . . . . . . . . . ........ . . . ... . . . . ... . .. .. . .. . ... . ..
lowQualScore : 777777777777 7 4 9999 11 1 4 0 0 8 77 4 4 4 1 4 888 9 0 0 99 4 66 7 4 33333 99 7 99 0 0 222 11 0 0 0 0 4 11 4 0 1 11 3 88 0 4 4 9999999999 0 4444444444 666 0 99 0 0 44 66666666 99999 4 99 888 0 888 0 0 4 4 4 0 0 0 0 33333333 8 0 0 000 0 0 6 6 444 6 55 00 6 00 1 000 0 55
consensus : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAAG-C-GTCT-AA---ATAAAAACC-TC-CT--CCTTTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-T-AA---TGTGTGA--CCCG-A-AT-G-AAAATA-AT--G-TGGAACCAAAGA--TATATTAN-TTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
Reference ( family-83 ) : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-ATT-TCAAG-C-GTCT-AA---ATAAAAACC-TC-CT--CCTTTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-T-AA--GTGTGTGA--CCCG-A-AT-G-AAAATA-AT--G-TGGAACCAAAGA--TATATTAN-TTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTNGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
gi|1 : TA-TA---T--GTCAA-TACGA-TTCAA-CAAAACG-TTTC-ATT-TC-AG-C-G--T-AA---ATAAAAAAT-TCAAT--CC---CGG---GTCCTA-AAA-TACCAGGAGACG--TT-CCAGA--TTAT-AATTTTATGTGAATTCTG-A-AT-C-AAAGTA-AC--G-T---------------TTTTAT-TTCAAGCG--GTC-TAAA-ATAAAAAATTCCT-CCTTT-TGGCAGTCAAG-A-TT--ATTATAA
gi|1 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtcGTCCTAAAATACCAGGAGACGTTCCAGA-TTATAA-TTTTAT--GTGAATTCTGA-ATCAA-AGTAACGTTTTT-ATT-TCAAG-CGGTCTAAA---ATAAAAAAT-TC-CT--CCTTTTGGC-AGTC--A-AGATTATT-----ATAATTTGCTAGAACCT-T-AA---TGTGTGA--CCCG-A-ATAG-AAAATA-AT--G-TGGAACCAAAGA--TATA-TAT-TTGGGGCGATGTT-T-AA-ATAAA-------C-GATTG-TGGTGGAC-AG-ATTT--ATTATAAAATGATGTTGGTCGTTTGAAAAAGA-T-A-TTTTA------TTTGGGGATG--A-ATAATTATAA--TTT---G-G---T-A-TCTTAAAA-TCGG-T---TATGTTATTAT-CAAT-TGCTTGGGG-----ATATAATAA-AATGTC-GGCAAATAGGA-TTTTTTGTGGTCCA-GA--TA-TTATTTTA-GAGTGATTT-TAC-ATAGT--GAAATTAAAT-AATA--ATGT-GG---GATACG-CTAATCGGCTTTCtttgctagaaccttaatgtgtgacccgaatagaaaataatgtggaaccaaagatatatatttggggcgatgtttaaataaacgattgtggtggacagatttattataaaatgatgttggtcgtttgaaaaagatattttatttggggatgaataattataatttggtatcttaaaatcggttatgttattatcaattgcttggggatataataaaatgtcggcaaataggattttttgtggtccagatattattttagagtgattttacatagtgaaattaaataataatgtgggatacgctaatcggctttc
gi|10 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtctatatgtcaatacgattcaacaaaacgtttcatttcagcgtaaataaaaaattcaatcccggATAAATTTT---G-G---TTA-TCTGAAAAATC---TA-CTAGATTAATAT-T-AT--GT-TGGGATAT------AATAATAATGTCTGGCAAATAGGG-TTTT---T-GTCCA--AT-TATTTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACGTTTA--CGGCTTTCCA
gi|11 : ttaGCTAATA--ATAGATT-------------TTTCTA-A--CT-T-AA---TGTGTGA--CCCGTA-AT-GGAAAATACAT--A-TGGA-CCAA-GA--TA-ATTATCTTTGGGCGATGTT--AAA-ATGAA-------T--ATTG-TGGTGGAC-----------------A--AATGTTTGTCGTTTG--AAAGA-TAATTTTTA---------GGGG--t
gi|12 : TAGATTATTAT-T-AT-TGT-TGGGATAT------AATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--CGGCTTTCCA
gi|14 : AAA-TCGG-TA-CTAGATTATTAT-T-AT-TAT-TGGG------ATATAATAATGATGTC-GGCAAATATGG-ATTT---TGGTCAA-G--------------------ATTT-TAC-ATAGT--GAAAAATAAT-AATA--ATGT
gi|15 : TTGTT-ATT-TCAAG-C-GTCT-AA---ATAAAAATCGTG-TT--CTTTTTGGCTAGTC--A-AGATTCTT-----ATA--ATGCTAGA--CT-T-AA---TGTGTGA--CCTG-A-AT-G-AAA
gi|17 : AACGTTTC--ATT-TCAAG-C-ATGT-AA---ATAAAAAC
gi|17 : aaA-A---------GTTCCAGA-TTATTA-T----T--GGAAA-TCTGC-TTCAA-AGTAACGTtaagttccagattattattggaaatctgcttcaaagtaacgt
gi|18 : aaaacgtttcatttcaagcatgtaaataaaaact-TTATTG-A-G---CATTT-TA--ATAGTTTGAAAAATAAT-AATG--ATGT--G---GATAC--TTA--CGGCTTTCCA
gi|2 : ATTA-T----T--GTCAA-TCCGA-T-CAA-ACAAACGTCTTC-ATTATCAAGGC-GT---AA---ATAAAATCCGCC-CT--CCTtt
gi|2 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaTCCTAAAA-A----------TTCCAGAATTATTA-T----CTGGTGAA-TCTGAATTCAACAGTAACGTTTTTGATT-TCAA--C-GTCT-AATAAAAAAAAACT-TC-CCTCCCTTTCTGCTAGTCC-A-AGATTATT-----ATA--TTGCTAGA--AC-T-AA---TGTTTGA--CC-----GT-G-AAAATA--T--GCTGGTACAAAAGACTTA-ATTA--TTTGGGCGATGTT-TAAA-ATAAA-------T-GATTG-TGGTGGAC-AGCA-TTA-ATTATAAA--GATGTTGGTCGTT----GAAGA-T-A-----A------T------------TATAATTATAA--TTT---GTG---T-A-TCTGAAGA-TCTG-TA-CTAGATTATTATCT-AT-TGC-TGGGATAT--A-ATGATAATG--GTC-GGC-AATAGGGATTTT---TGGT-CA-GAT-TA-TTA--TTAGG---CATTT-TAA-ACAATAGGAAAAATAATAAATA--ATGTGGG---GATACG-CTA--GCGCTTTaaaaattccagaattattatctggtgaatctgaattcaacagtaacgtttttgatttcaacgtctaataaaaaaaaacttccctccctttctgctagtccaagattattatattgctagaactaatgtttgaccgtgaaaatatgctggtacaaaagacttaattatttgggcgatgtttaaaataaatgattgtggtggacagcattaattataaagatgttggtcgttgaagataattataattataatttgtgtatctgaagatctgtactagattattatctattgctgggatataatgataatggtcggcaatagggatttttggtcagattattattaggcattttaaacaataggaaaaataataaataatgtggggatacgctagcgcttt
gi|3 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaattattgtcaatccgatcaaacaaacgtcttcattatcaaggcgtaaataaaatccgcccGTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-AAT-TCAAG-C-GTCT-AA---ATAAAAACC-TC-CT--CCTTTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-T-AAT-GTGTGTGA--CCCG-A-AT-G-AAAATG-AT--G-TGGAACCAAAGA--TATATTAG-TCTGGGCGATGTT-TAAA-ATAGA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--GATGTTGGTCATTTG--AAAGA-T-ATTTTTATTTCATTTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCAGAAAA-TCGG-TA-CTAGATTACTAT-T-AT-TGT-TGGGATATACATGTAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCTA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--TGGCTTTCCA
gi|4 : AGA--CT-TGAA--GTGT-TGA--CCCG-ACAT-G-AAAATA-ATATG-TGGATCCAAAGA--TATATTAC-TTTGGGCGATGTTCTAAAGATGAA-------A-TATTGCTGGTGCGC-AC-A---------------GATGTTTGTCGTTTG--AAAGAAT-ATTTTTAC-----TTTGGGG--GCGATATAATTATAA--CTTCTTG-G---T-A-TCTGAAAA-TCGGGTA-CTAGATTCCAAT-T-ATATGT-TGGACTAT--A-ATAATCA-AGTGTC-GGCAAATAGGG-TTCT---TG-TCCACGATATA-TC--TTTA-G---CATTTATATTATAGT--GAAAAATAAT-AATAACATGTCGGCGCGATACG-TTA--CGGCTTTCCA
gi|5 : AAA-A---------ATTCCAGA-TTATTATT----T--GTGAA-T
gi|6 : cccctccccccccccgccaccccccccccccccctccttttgtattgaactgcaatgtcatccacctttttcttaagagatatattaggataatgagctgttgaacgtgggtttttacaatgagatgtatatgtacggtggcgcgttacaatagaaaaatattattttatggaaaatttaaacatcgatatccacgactatttttccgcattataaatcatcttctttaattcgagtcaacaaattttcattccggagtctataagaaatacctccttccTGTGTGA--CCCG-A-AT-G-AAAATA-AT--G-TGGAACCAGAGA--CATATTAT-TTTGGGCGCCGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-A--A-TC--AGGCCAGA---ATATTAGTTGTTTG--AAAGA-T-ATTTTTAT-----TTTGGGG--G--ATATGAATATAA--TTT---G-GAACT-A--CTGAAAA-TCGG-TA-CAA----ATTAT-T-AT-TGC-TACGATAT--ACAT-GTAATAATGTC-AGCCAATAAGG-TTTT---TGGTCCA-GAT-TA-TAATTTTA-G---CAATT-TAA-ATAAT--GAAAAATAGT-CATC--CTGTGGG---GATACC-TTA--CGGCTTTCCA
gi|7 : ATTA-T----T--GTCAA-TCCAA-TTCAA-CAAAACGTTTC--ATT-CCAAG-C-GTCT-AA---ATAAAAATC-TG-GT--CCTt
gi|7 : agtaggttacgtgattttcctatatattttaacgcatgaaGTCCTAAAA-T---------GTTCCAGA-TTATCA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-ATT-TCAAG-C-GTCT-AA---ATAAAAATC-TC-CT--CCTTTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-T-GA---TGTGTGA--CCCG-A-AT-G-AAAATA-AT--G-TGGAAC---AAA--TA-ATGAG-T---AGCATTGT-----A-ATAAA-------TGTATTaaaatgttccagattatcattgtgaatctgattcaaagtaacgtttttatttcaagcgtctaaataaaaatctcctccttttggctagtcaagattattatattgctagacttgatgtgtgacccgaatgaaaataatgtggaacaaataatgagtagcattgtaataaatgtatt
gi|8 : agtaggttacgtgattttcctatatattttaacgcatgaaattattgtcaatccaattcaacaaaacgtttcattccaagcgtctaaataaaaatctgCG-A-AT-G-AAAATA-AT--G-TGGAACCAAAGA--TATATTAA-TTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--AATGTTAGTCGTTTG--AAAGA-T-AT-------------------------ATAAATATAA--GTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTGT-T-AT-TGC-TGGGATAT--A-ATAATAATAATGTC-GGCAAATGGAA-ATTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-AAAGT--GAAAAATGAT-AATG--ATGTGGG---GATACG-TTA--CGGCTTTCC
gi|9 : TAGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--AT-TAATCATA----TT---G-GA--T-AATCTGAA---TCGG-TAACT-GTTAATTATCT-AT-TGC-TGGGG-A---ATATAATAATAATGTC-GGCAAATTGGA-TTTT---TGGTCCAAGAT-TC-TTATTTTA-G---C-TTT-TAT-ATAATAGGAAAAATAAT-AATA--ATGTAGG---GATACG-TTA--CGGCTTTCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCCCCCCCCTCCATTGGACTGGACTAGAGTATCATAGAACTTTGTACAGTGTCATTCATACCCCTTTTTGAAAGAGATGGATATAGGGATATTGAGGCGTGT
Unaligned ( gi|16 ): TATAGAACTGCAGTGTCATCCATACCCCTTTTCTTAAGAGATGATATTAGGGATAATGAGGCTTGTGAACGGCTGTACAATTGGA
Unaligned ( gi|19 ): ATGATGATGATGTGAGGAGAAGTTTCGTCTCTCAA
Alignments
lowQualScore : 222222222222 1111 1 11111 11 11111 111 111111111 2222222222 22222222 11111 111 11111111 11
lowQualScore : 999999999999 6 4 3333 66 0 4 55 5 0 99 4 4 4 1 4 777 0 0 5 66 22222 0 3 11 5 0 22222 77 0 66 5 333 4 66 4 4 8 4 66 4 2 22 66 7 99 2 4 4 999999999 5 6666666666 999 2 66 5 5 33 77777777 11111 1 66 888 5 333 5 5 4 4 4 8 4 4 4 99999999 0 4 4 777 8 4 3 3 666 3 66 55 3 55 4 777 4 55
lowQualScore : ............ . . .... .. . . .. . . .. . . . . . ... . . . .. ..... . . .. . . ..... .. . .. . ... . .. . . . . .. . . .. .. . .. . . . ......... . .......... ... . .. . . .. ........ ..... . .. ... . ... . . . . . . . . . ........ . . . ... . . . . ... . .. .. . .. . ... . ..
lowQualScore : 777777777777 7 4 9999 11 1 4 44 0 8 77 4 4 4 9 4 888 9 0 0 99 55555 7 1 99 0 1 55555 99 7 99 0 999 4 11 0 0 0 4 11 4 0 99 11 3 88 0 4 4 999999999 0 4444444444 666 2 99 0 0 44 66666666 99999 4 99 888 0 888 0 0 4 4 4 0 0 0 0 33333333 8 0 0 000 0 0 6 6 444 6 55 00 6 00 1 000 0 55
consensus : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
Reference ( family-83 ) : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
gi|1 : TA-TA---T--GTCAA-TACGA-TTCAA-CAAAACG-TTTC-ATT-TC-A-GC-G--T-AA---ATAAAAAAT-TCAAT--CC--------CGG---GTCCTA-AAA-TACCAGGAGACG--TT-CCAGA--TTATAATTTTATGT-GAATTCTG-A-AT-CAAAGTA-AC--G-T---------------TTTTA-TTTCAAGCG--GTC-TAAA-ATAAAAAATTCCT-CCTTT-TGGCAGTCAAG-A-TT--ATTATAA
gi|1 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtcGTCCTAAAATACCAGGAGACGTTCCAGA-TTATAA-TTTTAT--GTGAATTCTGA-ATCAA-AGTAACGTTTTT-ATT-TCAA-GCGGTCTAAA---ATAAAAAAT-TC-CT--CCT-----TTTGGC-AGTC--A-AGATTATT-----ATAATTTGCTAGAACCT-TAA---TGTGT-GA--CCCG-A-ATAGAAAATA-AT--G-TGGAACCAAAGA--TATA-TA-TTTGGGGCGATGTT-T-AA-ATAAA-------C-GATTG-TGGTGGAC-AG-ATTT--ATTATAAAATGATGTTGGTCGTTTGAAAAAGA-T-A-TTTTA------TTTGGGGATG--A-ATAATTATAA--TTT---G-G---T-A-TCTTAAAA-TCGG-T---TATGTTATTAT-CAAT-TGCTTGGGG-----ATATAATAA-AATGTC-GGCAAATAGGA-TTTTTTGTGGTCCA-GA--TA-TTATTTTA-GAGTGATTT-TAC-ATAGT--GAAATTAAAT-AATA--ATGT-GG---GATACG-CTAATCGGCTTTCtttgctagaaccttaatgtgtgacccgaatagaaaataatgtggaaccaaagatatatatttggggcgatgtttaaataaacgattgtggtggacagatttattataaaatgatgttggtcgtttgaaaaagatattttatttggggatgaataattataatttggtatcttaaaatcggttatgttattatcaattgcttggggatataataaaatgtcggcaaataggattttttgtggtccagatattattttagagtgattttacatagtgaaattaaataataatgtgggatacgctaatcggctttc
gi|10 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtctatatgtcaatacgattcaacaaaacgtttcatttcagcgtaaataaaaaattcaatcccggATAAATTTT---G-G---TTA-TCTGAAAAATC---TA-CTAGATTAATAT-T-AT--GT-TGGGATAT------AATAATAATGTCTGGCAAATAGGG-TTTT---T-GTCCA--AT-TATTTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACGTTTA--CGGCTTTCCA
gi|11 : ttaGCTAATA--ATAGATT-------------TTTCTA-A--CT-TAA---TGTGT-GA--CCCGTA-ATGGAAAATACAT--A-TGG-ACC-AAGA--TA-ATTATCTTTGGGCGATG-T-TAAA-ATGAA---------TATTG-TGGTGGAC-----------------A--AATGTTTGTCGTTTG--AAAGA-TAATTTTTA---------GGGG--t
gi|12 : TAGATTATTAT-T-AT-TGT-TGGGATAT------AATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--CGGCTTTCCA
gi|14 : AAA-TCGG-TA-CTAGATTATTAT-T-AT-TAT-TGGG------ATATAATAATGATGTC-GGCAAATATGG-ATTT---TGGTCAA-G--------------------ATTT-TAC-ATAGT--GAAAAATAAT-AATA--ATGT
gi|15 : TTGTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATCGTG-TT--CTT-----TTTGGCTAGTC--A-AGATTCTT-----ATA--ATGCTAGA--CT-TAA---TGTGT-GA--CCTG-A-AT-GAAA
gi|17 : AACGTTTC--ATT-TCAA-GC-ATGT-AA---ATAAAAAC
gi|17 : aaA-A---------GTTCCAGA-TTATTA-T----T--GGAAA-TCTGC-TTCAA-AGTAACGTtaagttccagattattattggaaatctgcttcaaagtaacgt
gi|18 : aaaacgtttcatttcaagcatgtaaataaaaact-TTATTG-A-G---CATTT-TA--ATAGTTTGAAAAATAAT-AATG--ATGT--G---GATAC--TTA--CGGCTTTCCA
gi|2 : ATTA-T----T--GTCAA-TCCGA--TCAA-ACAAACGTCTTC-ATTATCAAGGC-G--T-AA---ATAAAATCCGCC-CT--CCTAAAAATTC-------C--A-GAATTATT-----ATtt
gi|2 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaTCCTAAAA-A----------TTCCAGAATTATTA-T----CTGGTGAA-TCTGAATTCAACAGTAACGTTTTTGATT-TCAA--C-GTCT-AATAAAAAAAAACT-TC-CCTCCCT-----TTCTGCTAGTCC-A-AGATTATT-----ATA--TTGCTAGA--AC-TAA---TGTTT-GA--CC-----GT-GAAAATA--T--GCTGGTACAAAAGACTTA-ATTA--TTTGGGCGATGTT-TAAA-ATAAA-------T-GATTG-TGGTGGAC-AGCA-TTA-ATTATAAA--GATGTTGGTCGTT----GAAGA-T-A-----A------T------------TATAATTATAA--TTT---GTG---T-A-TCTGAAGA-TCTG-TA-CTAGATTATTATCT-AT-TGC-TGGGATAT--A-ATGATAATG--GTC-GGC-AATAGGGATTTT---TGGT-CA-GAT-TA-TTA--TTAGG---CATTT-TAA-ACAATAGGAAAAATAATAAATA--ATGTGGG---GATACG-CTA--GCGCTTTctggtgaatctgaattcaacagtaacgtttttgatttcaacgtctaataaaaaaaaacttccctccctttctgctagtccaagattattatattgctagaactaatgtttgaccgtgaaaatatgctggtacaaaagacttaattatttgggcgatgtttaaaataaatgattgtggtggacagcattaattataaagatgttggtcgttgaagataattataattataatttgtgtatctgaagatctgtactagattattatctattgctgggatataatgataatggtcggcaatagggatttttggtcagattattattaggcattttaaacaataggaaaaataataaataatgtggggatacgctagcgcttt
gi|3 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaattattgtcaatccgatcaaacaaacgtcttcattatcaaggcgtaaataaaatccgcccGTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-AAT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAATG-TGTGT-GA--CCCG-A-AT-GAAAATG-AT--G-TGGAACCAAAGA--TATATTA-GTCTGGGCGATGTT-TAAA-ATAGA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--GATGTTGGTCATTTG--AAAGA-T-ATTTTTATTTCATTTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCAGAAAA-TCGG-TA-CTAGATTACTAT-T-AT-TGT-TGGGATATACATGTAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCTA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--TGGCTTTCCA
gi|4 : AGA--CT-TGA---AGTGTTGA--CCCG-ACAT-GAAAATA-ATATG-TGGATCCAAAGA--TATATTA-CTTTGGGCGATGTTCTAAAGATGAA-------A-TATTGCTGGTGCGC-AC-A---------------GATGTTTGTCGTTTG--AAAGAAT-ATTTTTAC-----TTTGGGG--GCGATATAATTATAA--CTTCTTG-G---T-A-TCTGAAAA-TCGGGTA-CTAGATTCCAAT-T-ATATGT-TGGACTAT--A-ATAATCA-AGTGTC-GGCAAATAGGG-TTCT---TG-TCCACGATATA-TC--TTTA-G---CATTTATATTATAGT--GAAAAATAAT-AATAACATGTCGGCGCGATACG-TTA--CGGCTTTCCA
gi|5 : AAA-A---------ATTCCAGA-TTATTATT----T--GTGAA-T
gi|6 : cccctccccccccccgccaccccccccccccccctccttttgtattgaactgcaatgtcatccacctttttcttaagagatatattaggataatgagctgttgaacgtgggtttttacaatgagatgtatatgtacggtggcgcgttacaatagaaaaatattattttatggaaaatttaaacatcgatatccacgactatttttccgcattataaatcatcttctttaattcgagtcaacaaattttcattccggagtctataagaaatacctccttcc---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAGAGA--CATATTA-TTTTGGGCGCCGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-A--A-TC--AGGCCAGA---ATATTAGTTGTTTG--AAAGA-T-ATTTTTAT-----TTTGGGG--G--ATATGAATATAA--TTT---G-GAACT-A--CTGAAAA-TCGG-TA-CAA----ATTAT-T-AT-TGC-TACGATAT--ACAT-GTAATAATGTC-AGCCAATAAGG-TTTT---TGGTCCA-GAT-TA-TAATTTTA-G---CAATT-TAA-ATAAT--GAAAAATAGT-CATC--CTGTGGG---GATACC-TTA--CGGCTTTCCA
gi|7 : ATTA-T----T--GTCAA-TCCAA-TTCAA-CAAAACGTTTC--ATT-CCAA-GC-GTCT-AA---ATAAAAATC-TG-GT--CCT-----t
gi|7 : agtaggttacgtgattttcctatatattttaacgcatgaaGTCCTAAAA-T---------GTTCCAGA-TTATCA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TGA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAAC---AAA--TA-ATGA-GT---AGCATTGT-----A-ATAAA-------TGTATTaaaatgttccagattatcattgtgaatctgattcaaagtaacgtttttatttcaagcgtctaaataaaaatctcctccttttggctagtcaagattattatattgctagacttgatgtgtgacccgaatgaaaataatgtggaacaaataatgagtagcattgtaataaatgtatt
gi|8 : agtaggttacgtgattttcctatatattttaacgcatgaaattattgtcaatccaattcaacaaaacgtttcattccaagcgtctaaataaaaatctgCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-ATTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--AATGTTAGTCGTTTG--AAAGA-T-AT-------------------------ATAAATATAA--GTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTGT-T-AT-TGC-TGGGATAT--A-ATAATAATAATGTC-GGCAAATGGAA-ATTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-AAAGT--GAAAAATGAT-AATG--ATGTGGG---GATACG-TTA--CGGCTTTCC
gi|9 : TAGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--AT-TAATCATA----TT---G-GA--T-AATCTGAA---TCGG-TAACT-GTTAATTATCT-AT-TGC-TGGGG-A---ATATAATAATAATGTC-GGCAAATTGGA-TTTT---TGGTCCAAGAT-TC-TTATTTTA-G---C-TTT-TAT-ATAATAGGAAAAATAAT-AATA--ATGTAGG---GATACG-TTA--CGGCTTTCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCCCCCCCCTCCATTGGACTGGACTAGAGTATCATAGAACTTTGTACAGTGTCATTCATACCCCTTTTTGAAAGAGATGGATATAGGGATATTGAGGCGTGT
Unaligned ( gi|16 ): TATAGAACTGCAGTGTCATCCATACCCCTTTTCTTAAGAGATGATATTAGGGATAATGAGGCTTGTGAACGGCTGTACAATTGGA
Unaligned ( gi|19 ): ATGATGATGATGTGAGGAGAAGTTTCGTCTCTCAA
Alignments
lowQualScore : 222222222222 1111 1 11111 11 11111 111 111111111 2222222222 22222222 11111 111 11111111 11
lowQualScore : 999999999999 6 4 3333 66 0 4 55 5 0 99 4 4 4 1 4 777 0 0 5 66 22222 0 3 11 5 0 22222 77 0 66 5 333 4 66 4 4 8 4 66 4 2 22 66 7 99 2 4 4 999999999 5 6666666666 999 2 66 5 5 33 77777777 11111 1 66 888 5 333 5 5 4 4 4 8 4 4 4 99999999 0 4 4 777 8 4 3 3 666 3 66 55 3 55 4 777 4 55
lowQualScore : ............ . . .... .. . . .. . . .. . . . . . ... . . . .. ..... . . .. . . ..... .. . .. . ... . .. . . . . .. . . .. .. . .. . . . ......... . .......... ... . .. . . .. ........ ..... . .. ... . ... . . . . . . . . . ........ . . . ... . . . . ... . .. .. . .. . ... . ..
lowQualScore : 777777777777 7 4 9999 11 1 4 44 0 8 77 4 4 4 9 4 888 9 0 0 99 55555 7 1 99 0 1 55555 99 7 99 0 999 4 11 0 0 0 4 11 4 0 99 11 3 88 0 4 4 999999999 0 4444444444 666 2 99 0 0 44 66666666 99999 4 99 888 0 888 0 0 4 4 4 0 0 0 0 33333333 8 0 0 000 0 0 6 6 444 6 55 00 6 00 1 000 0 55
consensus : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
Reference ( family-83 ) : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
gi|1 : TA-TA---T--GTCAA-TACGA-TTCAA-CAAAACG-TTTC-ATT-TC-A-GC-G--T-AA---ATAAAAAAT-TCAAT--CC--------CGG---GTCCTA-AAA-TACCAGGAGACG--TT-CCAGA--TTATAATTTTATGT-GAATTCTG-A-AT-CAAAGTA-AC--G-T---------------TTTTA-TTTCAAGCG--GTC-TAAA-ATAAAAAATTCCT-CCTTT-TGGCAGTCAAG-A-TT--ATTATAA
gi|1 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtcGTCCTAAAATACCAGGAGACGTTCCAGA-TTATAA-TTTTAT--GTGAATTCTGA-ATCAA-AGTAACGTTTTT-ATT-TCAA-GCGGTCTAAA---ATAAAAAAT-TC-CT--CCT-----TTTGGC-AGTC--A-AGATTATT-----ATAATTTGCTAGAACCT-TAA---TGTGT-GA--CCCG-A-ATAGAAAATA-AT--G-TGGAACCAAAGA--TATA-TA-TTTGGGGCGATGTT-T-AA-ATAAA-------C-GATTG-TGGTGGAC-AG-ATTT--ATTATAAAATGATGTTGGTCGTTTGAAAAAGA-T-A-TTTTA------TTTGGGGATG--A-ATAATTATAA--TTT---G-G---T-A-TCTTAAAA-TCGG-T---TATGTTATTAT-CAAT-TGCTTGGGG-----ATATAATAA-AATGTC-GGCAAATAGGA-TTTTTTGTGGTCCA-GA--TA-TTATTTTA-GAGTGATTT-TAC-ATAGT--GAAATTAAAT-AATA--ATGT-GG---GATACG-CTAATCGGCTTTCtttgctagaaccttaatgtgtgacccgaatagaaaataatgtggaaccaaagatatatatttggggcgatgtttaaataaacgattgtggtggacagatttattataaaatgatgttggtcgtttgaaaaagatattttatttggggatgaataattataatttggtatcttaaaatcggttatgttattatcaattgcttggggatataataaaatgtcggcaaataggattttttgtggtccagatattattttagagtgattttacatagtgaaattaaataataatgtgggatacgctaatcggctttc
gi|10 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtctatatgtcaatacgattcaacaaaacgtttcatttcagcgtaaataaaaaattcaatcccggATAAATTTT---G-G---TTA-TCTGAAAAATC---TA-CTAGATTAATAT-T-AT--GT-TGGGATAT------AATAATAATGTCTGGCAAATAGGG-TTTT---T-GTCCA--AT-TATTTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACGTTTA--CGGCTTTCCA
gi|11 : ttaGCTAATA--ATAGATT-------------TTTCTA-A--CT-TAA---TGTGT-GA--CCCGTA-ATGGAAAATACAT--A-TGG-ACC-AAGA--TA-ATTATCTTTGGGCGATG-T-TAAA-ATGAA---------TATTG-TGGTGGAC-----------------A--AATGTTTGTCGTTTG--AAAGA-TAATTTTTA---------GGGG--t
gi|12 : TAGATTATTAT-T-AT-TGT-TGGGATAT------AATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--CGGCTTTCCA
gi|14 : AAA-TCGG-TA-CTAGATTATTAT-T-AT-TAT-TGGG------ATATAATAATGATGTC-GGCAAATATGG-ATTT---TGGTCAA-G--------------------ATTT-TAC-ATAGT--GAAAAATAAT-AATA--ATGT
gi|15 : TTGTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATCGTG-TT--CTT-----TTTGGCTAGTC--A-AGATTCTT-----ATA--ATGCTAGA--CT-TAA---TGTGT-GA--CCTG-A-AT-GAAA
gi|17 : AACGTTTC--ATT-TCAA-GC-ATGT-AA---ATAAAAAC
gi|17 : aaA-A---------GTTCCAGA-TTATTA-T----T--GGAAA-TCTGC-TTCAA-AGTAACGTtaagttccagattattattggaaatctgcttcaaagtaacgt
gi|18 : aaaacgtttcatttcaagcatgtaaataaaaact-TTATTG-A-G---CATTT-TA--ATAGTTTGAAAAATAAT-AATG--ATGT--G---GATAC--TTA--CGGCTTTCCA
gi|2 : ATTA-T----T--GTCAA-TCCGA--TCAA-ACAAACGTCTTC-ATTATCAAGGC-G--T-AA---ATAAAATCCGCC-CT--CCTAAAAATTC-------C--A-GAATTATT-----ATtt
gi|2 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaTCCTAAAA-A----------TTCCAGAATTATTA-T----CTGGTGAA-TCTGAATTCAACAGTAACGTTTTTGATT-TCAA--C-GTCT-AATAAAAAAAAACT-TC-CCTCCCT-----TTCTGCTAGTCC-A-AGATTATT-----ATA--TTGCTAGA--AC-TAA---TGTTT-GA--CC-----GT-GAAAATA--T--GCTGGTACAAAAGACTTA-ATTA--TTTGGGCGATGTT-TAAA-ATAAA-------T-GATTG-TGGTGGAC-AGCA-TTA-ATTATAAA--GATGTTGGTCGTT----GAAGA-T-A-----A------T------------TATAATTATAA--TTT---GTG---T-A-TCTGAAGA-TCTG-TA-CTAGATTATTATCT-AT-TGC-TGGGATAT--A-ATGATAATG--GTC-GGC-AATAGGGATTTT---TGGT-CA-GAT-TA-TTA--TTAGG---CATTT-TAA-ACAATAGGAAAAATAATAAATA--ATGTGGG---GATACG-CTA--GCGCTTTctggtgaatctgaattcaacagtaacgtttttgatttcaacgtctaataaaaaaaaacttccctccctttctgctagtccaagattattatattgctagaactaatgtttgaccgtgaaaatatgctggtacaaaagacttaattatttgggcgatgtttaaaataaatgattgtggtggacagcattaattataaagatgttggtcgttgaagataattataattataatttgtgtatctgaagatctgtactagattattatctattgctgggatataatgataatggtcggcaatagggatttttggtcagattattattaggcattttaaacaataggaaaaataataaataatgtggggatacgctagcgcttt
gi|3 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaattattgtcaatccgatcaaacaaacgtcttcattatcaaggcgtaaataaaatccgcccGTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-AAT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAATG-TGTGT-GA--CCCG-A-AT-GAAAATG-AT--G-TGGAACCAAAGA--TATATTA-GTCTGGGCGATGTT-TAAA-ATAGA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--GATGTTGGTCATTTG--AAAGA-T-ATTTTTATTTCATTTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCAGAAAA-TCGG-TA-CTAGATTACTAT-T-AT-TGT-TGGGATATACATGTAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCTA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--TGGCTTTCCA
gi|4 : AGA--CT-TGA---AGTGTTGA--CCCG-ACAT-GAAAATA-ATATG-TGGATCCAAAGA--TATATTA-CTTTGGGCGATGTTCTAAAGATGAA-------A-TATTGCTGGTGCGC-AC-A---------------GATGTTTGTCGTTTG--AAAGAAT-ATTTTTAC-----TTTGGGG--GCGATATAATTATAA--CTTCTTG-G---T-A-TCTGAAAA-TCGGGTA-CTAGATTCCAAT-T-ATATGT-TGGACTAT--A-ATAATCA-AGTGTC-GGCAAATAGGG-TTCT---TG-TCCACGATATA-TC--TTTA-G---CATTTATATTATAGT--GAAAAATAAT-AATAACATGTCGGCGCGATACG-TTA--CGGCTTTCCA
gi|5 : AAA-A---------ATTCCAGA-TTATTATT----T--GTGAA-T
gi|6 : cccctccccccccccgccaccccccccccccccctccttttgtattgaactgcaatgtcatccacctttttcttaagagatatattaggataatgagctgttgaacgtgggtttttacaatgagatgtatatgtacggtggcgcgttacaatagaaaaatattattttatggaaaatttaaacatcgatatccacgactatttttccgcattataaatcatcttctttaattcgagtcaacaaattttcattccggagtctataagaaatacctccttcc---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAGAGA--CATATTA-TTTTGGGCGCCGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-A--A-TC--AGGCCAGA---ATATTAGTTGTTTG--AAAGA-T-ATTTTTAT-----TTTGGGG--G--ATATGAATATAA--TTT---G-GAACT-A--CTGAAAA-TCGG-TA-CAA----ATTAT-T-AT-TGC-TACGATAT--ACAT-GTAATAATGTC-AGCCAATAAGG-TTTT---TGGTCCA-GAT-TA-TAATTTTA-G---CAATT-TAA-ATAAT--GAAAAATAGT-CATC--CTGTGGG---GATACC-TTA--CGGCTTTCCA
gi|7 : ATTA-T----T--GTCAA-TCCAA-TTCAA-CAAAACGTTTC--ATT-CCAA-GC-GTCT-AA---ATAAAAATC-TG-GT--CCT-----t
gi|7 : agtaggttacgtgattttcctatatattttaacgcatgaaGTCCTAAAA-T---------GTTCCAGA-TTATCA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TGA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAAC---AAA--TA-ATGA-GT---AGCATTGT-----A-ATAAA-------TGTATTaaaatgttccagattatcattgtgaatctgattcaaagtaacgtttttatttcaagcgtctaaataaaaatctcctccttttggctagtcaagattattatattgctagacttgatgtgtgacccgaatgaaaataatgtggaacaaataatgagtagcattgtaataaatgtatt
gi|8 : agtaggttacgtgattttcctatatattttaacgcatgaaattattgtcaatccaattcaacaaaacgtttcattccaagcgtctaaataaaaatctgCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-ATTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TTTAATTATAAA--AATGTTAGTCGTTTG--AAAGA-T-AT-------------------------ATAAATATAA--GTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTGT-T-AT-TGC-TGGGATAT--A-ATAATAATAATGTC-GGCAAATGGAA-ATTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-AAAGT--GAAAAATGAT-AATG--ATGTGGG---GATACG-TTA--CGGCTTTCC
gi|9 : TAGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--AT-TAATCATA----TT---G-GA--T-AATCTGAA---TCGG-TAACT-GTTAATTATCT-AT-TGC-TGGGG-A---ATATAATAATAATGTC-GGCAAATTGGA-TTTT---TGGTCCAAGAT-TC-TTATTTTA-G---C-TTT-TAT-ATAATAGGAAAAATAAT-AATA--ATGTAGG---GATACG-TTA--CGGCTTTCCA
blockSeqs : AG A T TTTA TG T AT C TG A G G T A TAA G . TC AAAAA T C T . AT AC . TG T . T C A C AT C A CA CT T TC A C G TG C AGCATTA A T . A A TT TTTCATTT GCG T AT CTT T AAC T A A G A C . A . ATATACAT T A . C A T G . A TT TT A AC G CGC T .
blockSeqs : AG . . . . . A . T . . . T . . G . . . T . . . . . . . . . . . G . . . T AA . T T A . . C . AGATTTA G G . . . TT CTT G T . . . A . . . . . C . . . ATATAC . . . A . . . . . T AG . . G . . .
blockSeqs : AA . . . . . T . T . . . T . . . . . . T . . . . . . . . . . . . . . . A CA . T G A . . T . AGATTTA G G . . . TT TTT G T . . . . . . . . . . . . . ATATA . . . . . . . . . T AG . . G . . .
blockSeqs : TG . . . . . T . C . . . T . . . . . . T . . . . . . . . . . . . . . . A CA . T C A . . T . AGATTT G T . . . TT TT G T . . . . . . . . . . . . . CTATA . . . . . . . . . C . . . G . . .
blockSeqs : A . . . . . T . T . . . T . . . . . . T . . . . . . . . . . . . . . . A CA . T T A . . A . AATC A A . . . TT T . T . . . . . . . . . . . . . ATATA . . . . . . . . . A . . . C . . .
blockSeqs : . . . . T . T . . . T . . . . . . . . . . . . . . . . . . . . . . A CA . . G C . . T . ACA . A . . . T . . . . . . . . . . . . . . . . ATAT . . . . . . . . . T . . . G . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . A C . . A T . . T . . A . . . . . . . . . . . . . . . . . . ATAT . . . . . . . . . A . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . GAAT . . . . . . . . . T . . . A . . .
blockSeqs : . . . . . . . AT . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : AG********** **** ** ***** *** ** CA T******** AGATTTA*** G** ** TT TT****** G**** ATATA*** *** *** **
originalCons : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AG-A-TT--ATTATAAA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTTGGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATAT--ATATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
finalCons : GTCCTAAAAAG----------TTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAAT--------TATTG-TGGTGGACAGATTTA---ATTATAAAG--ATGTTGGTCGTTTG--AAAGA-T-ATTTTTATT------TGGGGG----ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGC-TGGGATATA---ATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCCCCCCCCTCCATTGGACTGGACTAGAGTATCATAGAACTTTGTACAGTGTCATTCATACCCCTTTTTGAAAGAGATGGATATAGGGATATTGAGGCGTGT
Unaligned ( gi|16 ): TATAGAACTGCAGTGTCATCCATACCCCTTTTCTTAAGAGATGATATTAGGGATAATGAGGCTTGTGAACGGCTGTACAATTGGA
Unaligned ( gi|19 ): ATGATGATGATGTGAGGAGAAGTTTCGTCTCTCAA
Alignments
lowQualScore : 222222222222 1111 1 11111 11 11111 111 111111111 22222222 2222222222 11111 111 111 11
lowQualScore : 999999999999 6 4 3333 66 0 4 55 5 0 99 4 4 4 1 4 777 0 0 5 66 22222 0 3 11 5 0 22222 77 0 66 5 333 4 66 4 4 8 4 66 4 2 22 66 7 99 2 4 4 999999999 5 66666666 888888 2 66 5 5 33 7777777777 11111 1 66 888 5 333 5 5 4 4 4 8 4 4 55 0 111 4 4 777 8 4 3 3 666 3 66 55 3 55 4 777 4 55
lowQualScore : ............ . . .... .. . . .. . . .. . . . . . ... . . . .. ..... . . .. . . ..... .. . .. . ... . .. . . . . .. . . .. .. . .. . . . ......... . ........ ...... . .. . . .. .......... ..... . .. ... . ... . . . . . . . . .. . ... . . ... . . . . ... . .. .. . .. . ... . ..
lowQualScore : 777777777777 7 4 9999 11 1 4 44 0 8 77 4 4 4 9 4 888 9 0 0 99 55555 7 1 99 0 1 55555 99 7 99 0 999 4 11 0 0 0 4 11 4 0 99 11 3 88 0 4 4 999999999 0 22222222 333333 2 99 0 0 44 6666666666 99999 4 99 888 0 888 0 0 4 4 4 0 0 0 55 8 000 0 0 000 0 0 6 6 444 6 55 00 6 00 1 000 0 55
consensus : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AGATTTAATTATA--AA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTT-GGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGCT--GGGATATA---ATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
Reference ( family-83 ) : GTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCCGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTCGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-NTTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AGATTTAATTATA--AA--GATGTTGGTCGTTTG--AAAGA-T-ATTTTTA------TTT-GGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTAT-T-AT-TGCT--GGGATATA---ATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-TTA--CGGCTTTCCA
gi|1 : TA-TA---T--GTCAA-TACGA-TTCAA-CAAAACG-TTTC-ATT-TC-A-GC-G--T-AA---ATAAAAAAT-TCAAT--CC--------CGG---GTCCTA-AAA-TACCAGGAGACG--TT-CCAGA--TTATAATTTTATGT-GAATTCTG-A-AT-CAAAGTA-AC--G-T---------------TTTTA-TTTCAAGCG--GTC-TAAA-ATAAAAAATTCCT-CCTTT-TGGCAGTCAAGATT--ATTATA--A
gi|1 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtcGTCCTAAAATACCAGGAGACGTTCCAGA-TTATAA-TTTTAT--GTGAATTCTGA-ATCAA-AGTAACGTTTTT-ATT-TCAA-GCGGTCTAAA---ATAAAAAAT-TC-CT--CCT-----TTTGGC-AGTC--A-AGATTATT-----ATAATTTGCTAGAACCT-TAA---TGTGT-GA--CCCG-A-ATAGAAAATA-AT--G-TGGAACCAAAGA--TATA-TA-TTTGGGGCGATGTT-T-AA-ATAAA-------C-GATTG-TGGTGGAC-AGATTT-ATTATA--AAATGATGTTGGTCGTTTGAAAAAGA-T-A-TTTTA------TTT-GGGGATG--A-ATAATTATAA--TTT---G-G---T-A-TCTTAAAA-TCGG-T---TATGTTATTAT-CAAT-TGCTTGGGGATATA---ATAA----AATGTC-GGCAAATAGGA-TTTTTTGTGGTCCA-GA--TA-TTATTTTA-GAGTGATTT-TAC-ATAGT--GAAATTAAAT-AATA--ATGT-GG---GATACG-CTAATCGGCTTTCtttgctagaaccttaatgtgtgacccgaatagaaaataatgtggaaccaaagatatatatttggggcgatgtttaaataaacgattgtggtggacagatttattataaaatgatgttggtcgtttgaaaaagatattttatttggggatgaataattataatttggtatcttaaaatcggttatgttattatcaattgcttggggatataataaaatgtcggcaaataggattttttgtggtccagatattattttagagtgattttacatagtgaaattaaataataatgtgggatacgctaatcggctttc
gi|10 : ccccccccccttggactggactagaactgcagtgtctattcataacctttttccttaagaagatgatattataaggataagggcttgtgccgggctgtacaattggattttacggtgccgcgttcacatggaaaaaaattattaagaaattaatatatccagacgcttattttcacgctgagataatctagtctatatgtcaatacgattcaacaaaacgtttcatttcagcgtaaataaaaaattcaatcccggATAAATTTT---G-G---TTA-TCTGAAAAATC---TA-CTAGATTAATAT-T-AT--GTT--GGGATATA---A---TAATAATGTCTGGCAAATAGGG-TTTT---T-GTCCA--AT-TATTTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACGTTTA--CGGCTTTCCA
gi|11 : ttaGCTAATA--ATAGATT-------------TTTCTA-A--CT-TAA---TGTGT-GA--CCCGTA-ATGGAAAATACAT--A-TGG-ACC-AAGA--TA-ATTATCTTTGGGCGATG-T-TAAA-ATGAA---------TATTG-TGGTGGAC-----------------A--AATGTTTGTCGTTTG--AAAGA-TAATTTTTA----------GGGG--t
gi|12 : TAGATTATTAT-T-AT-TGTT--GGGAT------ATAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--CGGCTTTCCA
gi|14 : AAA-TCGG-TA-CTAGATTATTAT-T-AT-TATT--GGGAT------ATAATAATGATGTC-GGCAAATATGG-ATTT---TGGTCAA-G--------------------ATTT-TAC-ATAGT--GAAAAATAAT-AATA--ATGT
gi|15 : TTGTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATCGTG-TT--CTT-----TTTGGCTAGTC--A-AGATTCTT-----ATA--ATGCTAGA--CT-TAA---TGTGT-GA--CCTG-A-AT-GAAA
gi|17 : AACGTTTC--ATT-TCAA-GC-ATGT-AA---ATAAAAAC
gi|17 : aaA-A---------GTTCCAGA-TTATTA-T----T--GGAAA-TCTGC-TTCAA-AGTAACGTtaagttccagattattattggaaatctgcttcaaagtaacgt
gi|18 : aaaacgtttcatttcaagcatgtaaataaaaact-TTATTG-A-G---CATTT-TA--ATAGTTTGAAAAATAAT-AATG--ATGT--G---GATAC--TTA--CGGCTTTCCA
gi|2 : ATTA-T----T--GTCAA-TCCGA--TCAA-ACAAACGTCTTC-ATTATCAAGGC-G--T-AA---ATAAAATCCGCC-CT--CCTAAAAATTC-------C--A-GAATTATT-----ATtt
gi|2 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaTCCTAAAA-A----------TTCCAGAATTATTA-T----CTGGTGAA-TCTGAATTCAACAGTAACGTTTTTGATT-TCAA--C-GTCT-AATAAAAAAAAACT-TC-CCTCCCT-----TTCTGCTAGTCC-A-AGATTATT-----ATA--TTGCTAGA--AC-TAA---TGTTT-GA--CC-----GT-GAAAATA--T--GCTGGTACAAAAGACTTA-ATTA--TTTGGGCGATGTT-TAAA-ATAAA-------T-GATTG-TGGTGGAC-AGCATTAATTATA--AA--GATGTTGGTCGTT----GAAGA-T-A-----A------T-------------TATAATTATAA--TTT---GTG---T-A-TCTGAAGA-TCTG-TA-CTAGATTATTATCT-AT-TGCT--GGGATATA---ATGATAATG--GTC-GGC-AATAGGGATTTT---TGGT-CA-GAT-TA-TTA--TTAGG---CATTT-TAA-ACAATAGGAAAAATAATAAATA--ATGTGGG---GATACG-CTA--GCGCTTTctggtgaatctgaattcaacagtaacgtttttgatttcaacgtctaataaaaaaaaacttccctccctttctgctagtccaagattattatattgctagaactaatgtttgaccgtgaaaatatgctggtacaaaagacttaattatttgggcgatgtttaaaataaatgattgtggtggacagcattaattataaagatgttggtcgttgaagataattataattataatttgtgtatctgaagatctgtactagattattatctattgctgggatataatgataatggtcggcaatagggatttttggtcagattattattaggcattttaaacaataggaaaaataataaataatgtggggatacgctagcgcttt
gi|3 : aatagattacggtggttttcccattacccagacgccttattttcacgcatgaataatctacgtctaattattgtcaatccgatcaaacaaacgtcttcattatcaaggcgtaaataaaatccgcccGTCCTAAAA-A---------GTTCCAGA-TTATTA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-AAT-TCAA-GC-GTCT-AA---ATAAAAACC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TAATG-TGTGT-GA--CCCG-A-AT-GAAAATG-AT--G-TGGAACCAAAGA--TATATTA-GTCTGGGCGATGTT-TAAA-ATAGA-------T-TATTG-TGGTGGAC-AGATTTAATTATA--AA--GATGTTGGTCATTTG--AAAGA-T-ATTTTTATTTCATTTT-GGGG--G--ATATAATTATAA--TTT---G-G---T-A-TCAGAAAA-TCGG-TA-CTAGATTACTAT-T-AT-TGTT--GGGATATACATGTAATAATAATGTC-GGCAAATAGGG-TTTT---TGGTCTA-GAT-TA-TTATTTTA-G---CATTT-TAT-ATAGT--GAAAAATAAT-AATA--ATGTGGG---GATACG-CTA--TGGCTTTCCA
gi|4 : AGA--CT-TGA---AGTGTTGA--CCCG-ACAT-GAAAATA-ATATG-TGGATCCAAAGA--TATATTA-CTTTGGGCGATGTTCTAAAGATGAA-------A-TATTGCTGGTGCGC-ACA----------------GATGTTTGTCGTTTG--AAAGAAT-ATTTTTAC-----TTT-GGGG--GCGATATAATTATAA--CTTCTTG-G---T-A-TCTGAAAA-TCGGGTA-CTAGATTCCAAT-T-ATATGTT--GGACTATA---ATAATCA-AGTGTC-GGCAAATAGGG-TTCT---TG-TCCACGATATA-TC--TTTA-G---CATTTATATTATAGT--GAAAAATAAT-AATAACATGTCGGCGCGATACG-TTA--CGGCTTTCCA
gi|5 : AAA-A---------ATTCCAGA-TTATTATT----T--GTGAA-T
gi|6 : cccctccccccccccgccaccccccccccccccctccttttgtattgaactgcaatgtcatccacctttttcttaagagatatattaggataatgagctgttgaacgtgggtttttacaatgagatgtatatgtacggtggcgcgttacaatagaaaaatattattttatggaaaatttaaacatcgatatccacgactatttttccgcattataaatcatcttctttaattcgagtcaacaaattttcattccggagtctataagaaatacctccttcc---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAACCAGAGA--CATATTA-TTTTGGGCGCCGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-A------ATCAGGCCAG--AATATTAGTTGTTTG--AAAGA-T-ATTTTTA------TTTTGGGG--G--ATATGAATATAA--TTT---G-GAACT-A--CTGAAAA-TCGG-TA-CAA----ATTAT-T-AT-TGCT--ACGATATAC--AT-GTAATAATGTC-AGCCAATAAGG-TTTT---TGGTCCA-GAT-TA-TAATTTTA-G---CAATT-TAA-ATAAT--GAAAAATAGT-CATC--CTGTGGG---GATACC-TTA--CGGCTTTCCA
gi|7 : ATTA-T----T--GTCAA-TCCAA-TTCAA-CAAAACGTTTC--ATT-CCAA-GC-GTCT-AA---ATAAAAATC-TG-GT--CCT-----t
gi|7 : agtaggttacgtgattttcctatatattttaacgcatgaaGTCCTAAAA-T---------GTTCCAGA-TTATCA-T----T--GTGAA-TCTGA-TTCAA-AGTAACGTTTTT-ATT-TCAA-GC-GTCT-AA---ATAAAAATC-TC-CT--CCT-----TTTGGCTAGTC--A-AGATTATT-----ATA--TTGCTAGA--CT-TGA---TGTGT-GA--CCCG-A-AT-GAAAATA-AT--G-TGGAAC---AAA--TA-ATGA-GT---AGCATTGT-----A-ATAAA-------TGTATTaaaatgttccagattatcattgtgaatctgattcaaagtaacgtttttatttcaagcgtctaaataaaaatctcctccttttggctagtcaagattattatattgctagacttgatgtgtgacccgaatgaaaataatgtggaacaaataatgagtagcattgtaataaatgtatt
gi|8 : agtaggttacgtgattttcctatatattttaacgcatgaaattattgtcaatccaattcaacaaaacgtttcattccaagcgtctaaataaaaatctgCG-A-AT-GAAAATA-AT--G-TGGAACCAAAGA--TATATTA-ATTTGGGCGATGTT-TAAA-ATAAA-------T-TATTG-TGGTGGAC-AGATTTAATTATA--AA--AATGTTAGTCGTTTG--AAAGA-T-AT--------------------------ATAAATATAA--GTT---G-G---T-A-TCTGAAAA-TCGG-TA-CTAGATTATTGT-T-AT-TGCT--GGGATATA---ATAATAATAATGTC-GGCAAATGGAA-ATTT---TGGTCCA-GAT-TA-TTATTTTA-G---CATTT-TAT-AAAGT--GAAAAATGAT-AATG--ATGTGGG---GATACG-TTA--CGGCTTTCC
gi|9 : TAGTCGTTTG--AAAGA-T-ATTTTTA------TTT-GGGG--G--AT-TAATCATA----TT---G-GA--T-AATCTGAA---TCGG-TAACT-GTTAATTATCT-AT-TGCT--GGGGAATA----TAATAATAATGTC-GGCAAATTGGA-TTTT---TGGTCCAAGAT-TC-TTATTTTA-G---C-TTT-TAT-ATAATAGGAAAAATAAT-AATA--ATGTAGG---GATACG-TTA--CGGCTTTCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCCCCCCCCTCCATTGGACTGGACTAGAGTATCATAGAACTTTGTACAGTGTCATTCATACCCCTTTTTGAAAGAGATGGATATAGGGATATTGAGGCGTGT
Unaligned ( gi|16 ): TATAGAACTGCAGTGTCATCCATACCCCTTTTCTTAAGAGATGATATTAGGGATAATGAGGCTTGTGAACGGCTGTACAATTGGA
Unaligned ( gi|19 ): ATGATGATGATGTGAGGAGAAGTTTCGTCTCTCAA