lowQualScore : 11111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 00000000000000 11 1111 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 222222 11 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222222 11 44444444444444444444 11111111 2222222222222 1 11111111111111111111111111111 33333333333333333 1111 1 22
lowQualScore : 4 55 8 5 33333333333333 5 22 0000 2 77 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 9999999 2 7 000000 3 99 1 5 88 1 0 77 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777 11 77 0 00000000000000000000 44444444 2 9999999999999 1 6 4 88888888888888888888888888888 11111111111111111 3 0000 2 0 55
lowQualScore : . .. . . .............. . .. .... . .. . . ................................................................................................................ . ....... . . ...... . .. . . .. . . .. ............................................................................................... ......... .. .. . .................... ........ . ............. . . . ............................. ................. . .... . . ..
lowQualScore : 1 44 5 0 22222222222222 0 66 6666 2 22 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 5555555 6 3 555555 0 66 7 7 44 4 7 99 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333333333 00 99 4 66666666666666666666 99999999 8 3333333333333 8 0 5 99999999999999999999999999999 99999999999999999 2 6666 8 5 55
consensus : TCTTACACACCCTGGAAG-TCNAA-TAAAGCAACCTACCTGCAC--TT-CGTT-AAGTC----TGTTGCTCCAGCCACGA-GGC-CTGACGA--TGCTACAA--CACGAG-CCT-AA-GAT-GAGCATNCCGTCGTTCCCTTCCA------GAA-------ACC--TG----------ACCNAGAGCTTAATATCAA--T-TGATCCATCCGTCCTCCGTC----AANT-C---GCTCAGATCC-TCTGA-AT-T-TCTGTC--GA-----------A-AT-CTG-----------CG--------------TTT-TCAACTT----CA-----AGCTAG-------GCNAACGC-GACG-TTTCTCCGT-CACTGATTGACCA-NATCAC--ACC----ACGGA-ATTTA-G-C-CGCTC--CTCG--TGTCTTCAATTGAGTTGAATTGACGCTC-TAGATTACCTTTATTTTTACACCTGAT---TTC-GTCCT--TTTTTT---C--ATTCCTTC-G------------AAATCGAGTA----TTTATAATGT-ACATTCTATA
Reference ( gi|2 ) : TCTTACATACCCTGGAAA-TCGAA-TAAAGCA-------TGC-T--TT-CGTG-AAGTC----TGTTGTTCCATTCACGA-GGT-CTGACGA-GTGCTACAAC-CACGAGTTTT-ACCGAT-GAGGATGCTCTTGCTCCCTTCCA------GAA-------ACA--TG----------ACCAAGAGCTTAATATTGATGTGTGATCCATCCATCCTCCGTT----AATT-C---GTACAGATCA-TCTGA-AC-T-TCTGTT--GA-----------A-AT-CTG-----------CG--------------TTT-TCAATTT----CA-----AGCTCA-------GCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACC----ATGGAACTCTA-G-C-TGCTC--TTCT--TGTCTTCAGTTGAGTTGACTTGATGTTC-AAAATTACCTTTA-TTTTATACCTGATCGGTTG-GTTTT--TTTTTT---CA-ATTCC-TC-G------------AAATTGAATA----TCTACAGTGT-ACATTCTATA
gi|10 : TCTTACACACCCTGGAAG-TCCAA-TAAAGCAACCTACCTGCAC--TT-CGTT-AAGTC----TGTTGCTCCAGCCACGA-GGC-CTGACGA----------------------------T-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAA----ACC--TG----------ACCTAGAACTT-------------GATCCATCCGTCCTCCATC----AAAT-C---
gi|8 : tcattcgtgtttatctttcTCTTACACACCCTGGAAG-TCCAA-TAAAGCAACCTACCTGCAC--TT-CGTT-AAGTC----TGTTGCTCCAGCCACGA-GGC-CTGACGA----------------------------T-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAA----ACC--TG----------ACCTAGAACTT-------------GATCCATCCGTCCTCCATC----AAAT-C---
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGAAG-TCCAA-TAAAGCAACCTACCTGC-CACTT-CGTT-AAGTC----TGTTGCTCCAGCCACGA-GGC-CTGACGA----------------------------T-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAA----ACC--TG----------ACCTAGAACTT-------------GATCCATCCGTCCTCCATC----AAAT-C---t
gi|1 : catttcgttgtttatcttcTTACACGCCCTGGAGG-TCAAA-CAAAGCA--------AC-C--TA-CATA-AACCCAATATGTCGCTGCAGCCACGA-GGC-CTGATGA-t
gi|11 : TTACACACCCTGGAAAGTCCAA-TAAAGCAACCTACCTGC-CACTT-CGTT-AAGTC----TGTTGCTCCAGCCACGA-GGC-CTGACGA-agaacatgacgtacatgtccaggagcttagcatcagtttgattcaaccatcctccgtcaattctcttagatcctcaaaagttatgtcgaattctgtgtttaacaattgcatttttaactgaaagtaaggcaaattacgtcttccccatctttgttaccacttcactaaccagatgtagatttactctgcacctcgtggtgtcagttgcgttaaattatatttcttttacacctttttcatctttcccattccttggaaattaaatatttgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|3 : TACATACCCTGGAAA-TCGAAATAAAGCA-------TGC-T--TTTCGTG-AAGTC----TGTTGTTCCATTCACGAAGGT-CTGACGAAGTGCTACAAC-CACTGGTTTTTACTGATTGAGGAT-CTCTT-CTCCCTTCCA------GA---------CA--TG----------ACCAAGAGCT-AATATTGATGTGTG-TC--TCC--TCTCCGT-----AATT-C---GTACAGATCAATCTGA-AC-T-TCTGTT--GA-----------A-AT-CTG-----------CG--------------TTT-TCAATTTTTT-CA-----AGCTCA-------GC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACC----ATGGAACTCTA-G-C-TG-TC--TTCT--TGTCTTCAGTTGAGTTGACTTGATGTTC--AAATTACCTTTATTTTTATACCTGATCGGTTG-GTTTT--TTTTTT---TA-ATTCC-TC-G------------AAA-TGAATA----TCTACAGTGT-ACATTCTAtgaaatatcccatcgttcctttctataccttgaaaaaacctgacctagaacttgatccatccgtcctccatcaaatc
gi|12 : TACACACCCTAAAAA-TAAAA-TAAAGCAACCTACCCGCAC--TT-CATTTACGTC----TGTTGCTCCAGCAACGA-GGT-CTGACGA-atat
gi|6 : ACACATCCTGGAAG-TCAAA-TAAAGCA--------AC-C--TG-CCTG-CA-------CGTTGT--------CAA-AATACT-------TGCTCCAGC-CACGAGGTCT-GACGAT-GAACATACTGTCGCTCCTTTC-A------AAA-------ACT--TGCAAACACTTTGCCAAGAGCTTAATATCAA-AT-CAATCCATCCATCCTCCATT----AATT-C---TCGCAAATCC-TTTGA-ATATATCAATT--GACTGTGTTCAACA-AT--GG-----------CG--------------TTT-TCAACTT----CG-----AA-TAG-------GCTAA-GCAGACG-TTTATCTGT---------GACCA-CATC-------------------------C-CGCTT--CTCG--TGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtgaactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|5 : -GGT-GTAAC----TGCTACAAA-CACGAACCCT-AAGGAT-GAGCATGC-CTTGTTCCCTTCCA-------AT-------TCT--TG------------------CTTAATGTTAAC-T-TGATCCATATAATTTCC--C----AATTTC---GCTCATATTC-TCTTA-AT-T-TCTGTC--GA-----------A-AT-CTGTTTAACAATTGCG--------------TTT-TTAACTT----TA-----AG-TAG-------GCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATC----ACGGA--TGTA-G-TGTACTCAGCTCT--TGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTG------TG-----------TTT---CT-ATTCC-TT-GTACATGTACATCAAATTGAA-G----TTTATAATA--ACATTCTATa
gi|4 : tttcaaccgacctgtacttcgtctaaatctgtc-GGT-GTAAC----TGCTACAAAACACGAACCCT-AAGGAT-GAGCATGC-CTTGTTCCCTTCCA-------AT-------TCT--TG------------------CTTAATGTTAAC-T-TGATCCATATAATTTCC--C----AATTTC---GCTCA-ATTC-TCTTA-AT-T-TCTGTC--GA-----------A-AT-CTGTTTAACAATTGCG--------------TTT-TTAACTT----TA-----AG-TAG-------GCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATC----ACGGATGT-TA-G-TGTACTCAGCTCT--TGTCTTCAATT---TT-------TGT-------TTACCTTTA-TCATACACCTG------TGTGTTCTA-TTCCTTGTACATGTACA-TC--------------AAATTGAA-G----TTTATAATA--ACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|15 : tttcaaccgacctgtacttcgtctaaatctgtcATACTGTCGTTCCTTTCGA------AAACTTGCAAACACTTT----------ACCAAGAGTATAATATCAA------ATCCATCCATCCACCCTTCAGCAATT-CTCGGAACAGATC----TAATAC-TATGTGCTCAGC-----------A-AG-TGG-----------AG--------------TTT-TCAATTTTGAACA-----GGCTtaaatgcatgcactgcttacaattatttattcca
gi|7 : cgagatcCTTGCA------AAA-------GC---TAC---------ACCAAGAACTTACTATCAA-AT-TAATCCATCCATTCTCCGCC----AGGT-C---TCTCAGATCG-CCTGA-AT-T-TATGTC--CA-----------ATATTCTG-----------TGAACAACACTAGTGTTTT-TCACCTT----CA-----AA-TAA-------GCAAACG-------TTTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAATTTA-CTC-CACTC--CTCG--CGTCTTCAACAGAGTTGACTGGGAGCTC-TAAATTACTTTTA-TTTTACACCaaactg
gi|11 : A------AAA-------ACC--TG----------ACCTAGAACT-------------TGATCCATCCGTCCTCCATC----AAAT-C---
gi|1 : ttacacaccctggaaagtccaataaagcaacctacctgccacttcgttaagtctgttgctccagccacgaggcctgacgatgaaatatcccatcgttcctttctataccttga-------ACA--TG----------TCCAGGAGCTTAGCATCA--GTTTGATTCAACCATCCTCCGTC----AATT-C---TCTTAGATCC-TCAAA-AG-T-TATGTC--GA-----------A-TT-CTG-----------TG--------------TTTAACAATTG----CATTTTTAACTGAAAGTAAGGCAAAT---TACGTCTTCCCCAT-CTTTGTT--ACCA-CTTCACTAACCAG--ATGTAGATTTACT-C-TGCAC--CTCG--TGGTGTCAGTTGCGTT--------------AAATTATATTTC-TTTTACACCT-----------TTTTCATCTTTC---CC-ATTCC-TTGG------------AAATTAAATA----TTTGCA
gi|20 : ttacacgccctggaggtcaaacaaagcaacctacataaacccaatatgtcgctgcagccacgaggcctgatgaagaacatgacgtG-----------CG--------------TTT-TCAGCTT----CA-----AA-TAA-------GCAGACG-------TTTCTCTGTGTAATGATTGACCATTATCAC--ATC----tttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|21 : attctctaaatcctccgaatttatgtctggaatatgctgtgttcaacaatg-C-CGCTC--CTAG--TGTCTTCAATTGAGTTGAATTGACGCTC-TAGATTACCTTTA-TTTTACATCT-AT---TTC-ATCCT--TTTT--------ATTCCTTC-G------------AAATCAAGTA----
gi|18 : tatc-C-CGCTC--CTAG--TGTCTTCAATTGAGTTGAATTGACGCTC-TAGATTACCTTTATTTTTACATCT-AT---TTC-ATCCT--TTTT--------ATTCCTTC-G------------AAATCAAGTA----T
gi|16 : tc-C-CGCTC--CTAG--TGTCTTCAATTGAGTTGAATTGACGCTC-TAGATTACCTTTATTTTTACATCT-AT---TTC-ATCCT--TTTT--------ATTCCTTC-G------------AAATCAAGTA----Ttgctttatatgtaatattcg
gi|13 : tcaacttccaataagccaacttcgactatcgtatcC--TCCTAGTGTCTTCAATTGAGTTGAATTGACGCTC-TAGATTACCTTTATTTTTACATCT-AT---TTC-ATCCT--TTTT--------ATTCCTTC-G------------AAATCAAGTATTGCTTTATA-TGTAATATTCGATAtgctttatatgtaatattcgat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTATTTTAGACCTATTTCATCTTTTTTATTCCTACGAAATTAAATATTTGTAATTCATATTGCCTTAGATGTTGTTTTCAAATATTTATTCTATAAAAACCTATTGAACTACCGGTATATCTTGTGTTGTCCTATCATTATTTAGGTCAATTG
Unaligned ( gi|17 ): TTTTTTCTCGAACACCCTGGAGTGGAAGTAACAAATTTTTTAGCAATCTACCTGCACTTCGTCTAAATCTGTCGGTGTAATGTCACAGCCATACCGTTCAGTGTTCCCTTCCAGAACTTGCAAAAGCAGCTCAACGTTAACTTGATTC
Unaligned ( gi|19 ): CCGTTCGTGTTTTATCTTCGTTTTACACACACTAAAATAGAAAGTAAAGAACCTAACCGACTTCAATTTAGCGATTATGTTGCTACCAGAGCAACGAGGTCTGGACGATGAA
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111 666666666666666666666666666666666666 666666666666666666666666666666666666666666666666666 1111 1111111 111 999999999999999999999999999999999999999999999999 1 222222222 111111 33333333 11111 11 1 3333333 333333 2222 1 22
lowQualScore : 99999 3 2 88 1111111 6 9999 555 2 3 44 1 3 2 3 333333333333333333333333333333333333 33 33 1 7 2 777777777777777777777777777777777777777777777777777 888 3 3 3 6 1 6 3 1 1111 4 4444444 4 777 222 8 4 4 999999999999999999999999999999999999999999999999 777 9 5 666666666 5 666666 0 66 66 5 99999999 2 00000 3 00 4 2 44 1 2 2 3 9 2222222 777 4 111111 8 0 1 2 1 8888 2 22
lowQualScore : ..... . . .. ....... . .... ... . . .. . . . . .................................... .. .. . . . ................................................... ... . . . . . . . . .... . ....... . ... ... . . . ................................................ ... . . ......... . ...... . .. .. . ........ . ..... . .. . . .. . . . . . ....... ... . ...... . . . . . .... . ..
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 1 22 5 1 5 1 555555555555555555555555555555555555 88 22 0 8 3 000000000000000000000000000000000000000000000000000 555 1 1 5 3 0 2 9 9 7777 4 4444444 4 222 222 9 4 4 444444444444444444444444444444444444444444444444 888 6 3 888888888 0 444444 1 00 99 3 66666666 1 22222 6 00 1 1 66 2 2 6 6 9 2222222 888 4 333333 9 1 1 7 9 3333 0 11
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CC--AGCCACGA-GGTCT-GACGA--TGCTAC----C--C-GGC-----C-T-A--G-AT-GAGCATNCCGTCGTTCCCTTCC---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CNCTCAGATC--C-TCTGA-AT-------T-T--CTG---TC-GA-A-AT---C-------------TG-------------CG--------------TTTTCAACTT---CAAGCTAGGCNAACGC-GACGGT-TTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTA-G-C-CGC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG-AT---TTC--GTCCT-TTTTT----CAT-TCCTTCGAAATCGAGTA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--AGCCACGA-GGCCT-GACGA--TGCTACAA--C-ACGAGC-----C-TAA--G-AT-GAGCATNCCGTCGTTCCCTTCC---------AGAAACCTG----------ACCNAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAANT-CGCTCAGATC--C-TCTGA-AT-------T-T--CTG---TC-GA-A-AT---C-------------TG-------------CG--------------TTTTCAACTT---CAAGCTAGGCNAACGC-GACG-T-TTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTA-G-C-CGC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACACCTG-AT---TTC--GTCCT-TTTTTT---CAT-TCCTTCGAAATCGAGTA----TTTATAATGT-ACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCGCT-GC--AGCCA------------CGA-----------------GGC-----C-TGAT-G-AA-GAACATGACGT------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTCTTAGATC--C-TCAAA-AG-------T-T--ATG---TC-GA-A-TT---CTGTGTTTAACAATTG-------------CA--------------TTTTTAACTG---AAAGTAAGGCAAA--T-TACG-TCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--GATGTAGA-TTTACT-C-TGC-AC--CTCGTGGTGTCAGTTGCGTTAAAT--------TATA-TTTC------TTTTACACCTT--T---TTC--ATC----TTTCC---CAT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--AGCCACGA-GGCCT-GAC----------------------------------G-AT-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--AGCCACGA-GGCCT-GACGA--TG-------------------------A--A-AT-----ATCCCATCGTTCCTTTCTATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTGCT-CC--AGCAACGA-GGTCT-GACGA--TG
gi|13 : -C-CGCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT--AT---TTC--ATCCT-TTTT------AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAaactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|15 : caacttccaataagccaacttcgactatcgtatc-GATCATACTGTCGTTCCTTTCG---------A-AAACTTGCAAACACTTTACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT---CTCGGAACAGA-TCTAATAC-------TAT--GTGC--TCAGC-A-AG---T-------------GG-------------AG--------------TTTTCAATTT---TGAAC-AGGCTAA
gi|16 : cga-C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT--AT---TTC--ATCCT-TTTT------AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCGGT-GT--A------------------A--TGTCAC---------AGC-----C--------AT--ACCGTTCAGT-GTTCCCTTCC---------AG-AACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : ttttt-C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT--AT---TTC--ATCCT-TTTT------AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTGCTACCAGAGCAACGA-GGTCTGGACGA--TGg
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTGTT-CC--ATTCACGA-GGTCT-GACGAG-TGCTACAA--CCACGAGT-----T-TTACCG-AT-GAGGATGCTCTTGCTCCCTTCC---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGTACAGATC--A-TCTGA-AC-------T-T--CTG---TT-GA-A-AT---C-------------TG-------------CG--------------TTTTCAATTT---CAAGCTCAGCCAATGC-CACGAT-TTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTA-G-C-TGC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG-ATCGGTTG--GTTTT-TTTTTT---CAA-TTCCTCGAAATTGAATA----TCTACAGTGT-ACATTCTATAaa
gi|20 : ATT-CTCT-AAATC--C-TCCGA-AT-------T-T--ATG---TCTGG-A-ATATGC-------------TGTGTTCAACAATGGCG--------------TTTTCAGCTT---CAAA-TAAGCA------GACG-T-TTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : -C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT--AT---TTC--ATCCT-TTTT------AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTGTT-CC--ATTCACGAAGGTCT-GACGAAGTGCTACAA--CCACTGGTTTTTAC-T----G-ATTGAGGATCTCTTC--TCCCTTCC---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGTACAGATC--AATCTGA-AC-------T-T--CTG---TT-GA-A-AT---C-------------TG-------------CG--------------TTTTCAATTTTTTCAAGCTCAGC-AATGC-CACGAT-TCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTA-G-C-TG--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG-ATCGGTTG--GTTTT-TTTTTT---TAA-TTCCTCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCG-----------------GTGT-AAC----TGCTACAAAAC-ACGAAC-----CCTAA--GGAT-GAGCATGCC-TTGTTCCCTTCC---------A--ATTCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGCTCA-ATT--C-TCTTA-AT-------T-T--CTG---TC-GA-A-AT---C-------------TGTTTAACAATTG--CG--------------TTTTTAACTT---TAAG-TAGGCCAACAC-GGTGGT-TTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGGA-----T-GTTA-G-TGTAC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTG------TGT--GTTCTATTCCTTGTACATGTACATC-AAATTGAA-G----TTTATAATA--ACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCG-----------------GTGT-AAC----TGCTACAAA-C-ACGAAC-----CCTAA--GGAT-GAGCATGCC-TTGTTCCCTTCC---------A--ATTCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGCTCATATT--C-TCTTA-AT-------T-T--CTG---TC-GA-A-AT---C-------------TGTTTAACAATTG--CG--------------TTTTTAACTT---TAAG-TAGGCCAACAC-GGTGGT-TTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG------A-TGTA-G-TGTAC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGTGT---TTCTATTCC---TTGTA---CATGTACATC-AAATTGAA-G----TTTATAATA--ACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTGCT-CC--AGCCACGA-GGTCT-GACGA--TG----------------------------------AACATACTGTCGCTCCTTTC----------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATC-AAAT---C-A-ATCCATCCATCCTCCATTAATT-CTCGCAAATC--C-TTTGA-ATATATCAAT-TGACTGTGTTC-AACA-AT-----------------GG-------------CG--------------TTTTCAACTT---CGAA-TAGGCTAA-GCAGACG-T-TTATCTG---------TGACCA-CATC--------------------------C-CGC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTGC---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTCTCAGATC--G-CCTGA-AT-------T-T--ATG---TC-CA-ATATT--C-------------TG-------------TGAACAACACTAGTGTTTTTCACCTT---CAAA-TAAGCAAACG-------T-TTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAA-TTTA-CTC-CAC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--AGCCACGA-GGCCT-GAC----------------------------------G-AT-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--AGCCACGA-GGCCT-GAC----------------------------------G-AT-GAATATCCCATCGTTCCTTTCTATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Ct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTATTTTAGACCTATTTCATCTTTTTTATTCCTACGAAATTAAATATTTGTAATTCATATTGCCTTAGATGTTGTTTTCAAATATTTATTCTATAAAAACCTATTGAACTACCGGTATATCTTGTGTTGTCCTATCATTATTTAGGTCAATTG
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 1111111 111 7777777777777777777777777777777 55555555555555555555 11111111111 333333333333 1111111 111 111 77777777777777777777777777777 2222222222222 1 22222222 11111 3333333333333 11 1 333333333 3333 2222
lowQualScore : 99999 3 2 88 1111111 6 9999 555 1 3 000 44 3 3 8888888888888888888888888888888 3 33 1 7 2 88888888888888888888 3 0 77777777777 2 3 444444444444 888 3 3 3 6 0 6 1 9999 1 44 0 8888888 777 777 4 222 4 4 222 99999999999999999999999999999 4444444444444 777 9 5 88888888 55555 0 66 66 5 9999999999999 2 8888 3 3 00 4 66 1 2 666 3 222222222 66 3 3333 8 6 3 0 5555 9 3 5
lowQualScore : ..... . . .. ....... . .... ... . . ... .. . . ............................... . .. . . . .................... . . ........... . . ............ ... . . . . . . . .... . .. . ....... ... ... . ... . . ... ............................. ............. ... . . ........ ..... . .. .. . ............. . .... . . .. . .. . . ... . ......... .. . .... . . . . .... . . .
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 1 888 22 1 1 6666666666666666666666666666666 6 22 0 8 3 88888888888888888888 4 7 00000000000 7 1 666666666666 555 1 1 5 3 8 2 0 9999 9 66 1 9999999 222 888 4 222 4 4 222 11111111111111111111111111111 4444444444444 888 6 3 55555555 00000 1 00 99 3 6666666666666 1 1111 6 6 00 1 99 2 2 111 3 444444444 88 2 1111 0 0 0 8 5555 4 2 0
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CCA---G--CCACG-AGGCCT-GACGA--TG--AC-----CC-----------A--GA-TGAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTCN---CAGATC-CTCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAA---CTTCAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGG-----A-----A-TTTA-GC-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-ATCCTTTTT-C--AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CCA---G--CCACG-AGGTCT-GACGA--TGCTAC-----CC----GG--CCTA--GA-TGAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CNCT---CAGATC-CTCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAA---CTTCAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGG-----A-----A-TTTA-GC-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-GTCCTTTTTTC--AT-TCCTTCGAAATCGAGTA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCGCT-GCA---G--CCACG-AGGCCT-GATG-------------------------------A-AGAACATGACGT---------------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTCT---TAGATC-CTCAAAAG-------TT--ATG---T-C---GA-A-TT---CTG-------------TG--------------TTTAACAATTGCATTTTTAA---CTGAAAGTAAGGCAAATT---ACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--G-----ATGTAGA-TTTA-CT-CTGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-ATC--TTTCCC--AT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CCA---G--CCACG-AGGCCT-GAC-------------------------------GA-TGAATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CCA---G--CCACG-AGGCCT-GACGA--TG----------------------A--AA-T----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTGCT-CCA---G--CAACG-AGGTCT-GACGA--TG
gi|13 : C-C-GCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAaactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-ATC--TTTTTT--AT-TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : GATCATACTGTCGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATC-T----AATA------CT--ATG---TGCTCAGC-A-AG---TGG-------------AG--------------TTT-------------TCAA---TTTTGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : cgaC-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCGGT------------------GT------AA--TGTCA-------C----AG--CC-----A-T-ACCGTTCAGT-GTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : tttttC-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACTAAA-----A--TAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTGCTACCA---GAGCAACG-AGGTCTGGACGA--TGg
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTGTT-CCA---T--TCACG-AGGTCT-GACGAG-TGCTACAA---CCACGAGT--TTTACCGA-TGAGGATGCTCTTGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGTA---CAGATC-ATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAA---TTTCAAGCTCAGCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGG-----A-----ACTCTA-GC-T-GC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-GTTTTTTTTTTCAAT-TCC-TCGAAATTGAATA----TCTACAGTGT-ACATTCTATAaa
gi|20 : ATT-CTCT----AAATC-CTCCGAAT-------TT--ATG---T-CT--GG-A-ATATGCTGTGTTCAACAATGGCG--------------TTT-------------TCAG---CTTCAAA-TAAGCAGAC-------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-ATCCTTTTT----AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTGTT-CCA---T--TCACGAAGGTCT-GACGAAGTGCTACAACCACT----GGTTTTTACTGATTGAGGATCTCTTC--TCCCTTC---------C-----------AGACATG----------ACCAAG-AGC-TAATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGTA---CAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTTTTTCAAGCTCAGC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGG-----A-----ACTCTA-GC-T-G--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-GTTTTTTTTTTTAAT-TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GTAACTG--CTACA-AAAC----ACGA------AC-----CC----------TAAGGA-TGAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGCT---CA-ATT-CTCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAA---CTTTAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG-----A-----T-GTTA-GTGT-AC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGTAC--ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GTAACTG--CTACA-AA--C---ACGA------AC-----CC----------TAAGGA-TGAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGCT---CATATT-CTCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAA---CTTTAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG-----------A-TGTA-GTGT-AC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGTAC--ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTGCT-CCA---G--CCACG-AGGTCT-GAC-------------------------------GA-TGAACATACTGTCGCT-CCTTT---------C---------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---C-A-ATCCATCCATCCTCCATTAATT-CTCG---CAAATC-CTTTGAATATATCAATTGACTGTGTT-C---AACA-AT----GG-------------CG--------------TTT-------------TCAA---CTTCGAA-TAGGCTAA-GCAGAC-GTTTATCTG---------TGACCA-CATC------------------------------C-C-GC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTCT---CAGATC-GCCTGAAT-------TT--ATG---T-C---CA-ATATT--CTG-------------TGAACAACACTAGTGTTTT-------------TCAC---CTTCAAA-TAAGCAAAC-------GTTT---------CTGACCGACCA-TATCAC--ACCCCAGATGTAA-----A-TTTACTC-C-AC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CCA---G--CCACG-AGGCCT-GAC-------------------------------GA-TGAATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CCA---G--CCACG-AGGCCT-GAC-------------------------------GA-TGAATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Ct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111 111 111111111111111111111111111111111111 111111 6666666666666666666 11111111111 333333333333 1111111 111 111 77777777777777777777777777777 2222222222222 1 22222222 11111 3333333333333 11 1 333333333 3333 2222
lowQualScore : 99999 3 2 88 1111111 6 9999 555 1 3 44 000 3 3 888888888888888888888888888888888888 2 000000 2222222222222222222 6 0 77777777777 2 3 444444444444 888 3 3 3 6 0 6 8888 1 44 0 8888888 777 777 4 222 4 4 222 99999999999999999999999999999 4444444444444 777 9 5 88888888 55555 0 66 66 5 9999999999999 2 8888 3 3 00 4 66 1 2 666 3 222222222 4 8 2222 8 6 3 0 5555 9 3 5
lowQualScore : ..... . . .. ....... . .... ... . . .. ... . . .................................... . ...... ................... . . ........... . . ............ ... . . . . . . .... . .. . ....... ... ... . ... . . ... ............................. ............. ... . . ........ ..... . .. .. . ............. . .... . . .. . .. . . ... . ......... . . .... . . . . .... . . .
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 1 22 888 1 1 333333333333333333333333333333333333 2 000000 2222222222222222222 0 7 00000000000 7 1 666666666666 555 1 1 5 3 8 2 8888 9 66 1 9999999 222 888 4 222 4 4 222 11111111111111111111111111111 4444444444444 888 6 3 55555555 00000 1 00 99 3 6666666666666 1 1111 6 6 00 1 99 2 2 111 3 444444444 0 0 2222 0 0 0 8 5555 4 2 0
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--AC--CC----------------GAT-GAGCATNCCGT----CGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGG-----A-----A-TTTA-GC-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--AC--CC---A------------GAT-GAGCATNCCGT----CGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGG-----A-----A-TTTA-GC-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCGCT-GC--A---GCCACGA-GGCCT-GATGA--AG--AA--C------------------AT-GA-------------CGT------------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTC---TTAGATCC-TCAAAAG-------TT--ATG---T-C---GA-A-TT---CTG-------------TG--------------TTTAACAATTGCATTTTTAACTG---AAAGTAAGGCAAATT---ACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--G-----ATGTAGA-TTTA-CT-CTGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-A-T-CTTTCCC---AT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--A----------------------AT-----ATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--A--------------------------AATATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTGCT-CC--A---GCAACGA-GGTCT-GACGA--TG--A
gi|13 : C-C-GCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-A-TCTTTTTT----AT-TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : -GATCATACTGT----CGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATCT-----AATA------CT--ATG---TGCTCAGC-A-AG---TGG-------------AG--------------TTT-------------TCAATTT---TGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : cgaC-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCGGT-GT--A---------------------A--TG--TC--AC---A------------G-----CCATACCGTTCAGTGTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : tttttC-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTGCTACCAGA---GCAACGA-GGTCTGGACGA--TG--Ag
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTGTT-CC--A---TTCACGA-GGTCT-GACGAG-TGCTACAACC---ACGAGTTTTACC-GAT-GAGGATGCTCT----TGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGT---ACAGATCA-TCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTT---CAAGCTCAGCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGG-----A-----ACTCTA-GC-T-GC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTCAAT-TCC-TCGAAATTGAATA----TCTACAGTGT-ACATTCTATAa
gi|20 : ATT-CTC---T-AAATCC-TCCGAAT-------TT--ATG---T-CT--GG-A-ATATGCTGTGTTCAACAATGGCG--------------TTT-------------TCAGCTT---CAAA-TAAGCAGAC-------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTGTT-CC--A---TTCACGAAGGTCT-GACGAAGTGCTACAACC---ACTGGTTTTTACTGATTGAGGATCTCTT----C--TCCCTTC---------C---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGT---ACAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTTTTTCAAGCTCAGC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGG-----A-----ACTCTA-GC-T-G--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTTAAT-TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GT--AACTGCTACAA-AAC----ACGA------AC--CCTAAG------------GAT-GAGCATGCC-T----TGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCA-ATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG-----A-----T-GTTA-GTGT-AC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GT--AACTGCTACAA-A--C---ACGA------AC--CCTAAG------------GAT-GAGCATGCC-T----TGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCATATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG-----------A-TGTA-GTGT-AC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTGCT-CC--A---GCCACGA-GGTCT-GACGA--TG--A---------------------------ACATACTGT----CGCTCCTTTC-------------------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---C-A-ATCCATCCATCCTCCATTAATT-CTC---GCAAATCC-TTTGAATATATCAATTGACTGTGTT-C---AACA-AT----GG-------------CG--------------TTT-------------TCAACTT---CGAA-TAGGCTAA-GCAGAC-GTTTATCTG---------TGACCA-CATC------------------------------C-C-GC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTC---TCAGATCG-CCTGAAT-------TT--ATG---T-C---CA-ATATT--CTG-------------TGAACAACACTAGTGTTTT-------------TCACCTT---CAAA-TAAGCAAAC-------GTTT---------CTGACCGACCA-TATCAC--ACCCCAGATGTAA-----A-TTTACTC-C-AC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--A----------------------AT-----ATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--A----------------------AT-----ATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 1111111 111 0000000000000000000000000000000000000 5555555555555555555 11111111111 333333333333 1111111 111 111 77777777777777777777777777777 2222222222222 1 222222222 111111 33333333333 11 1 333333333 3333 2222
lowQualScore : 99999 3 2 88 1111111 6 9999 555 1 3 44 555 3 33 1111111111111111111111111111111111111 2 9 8888888888888888888 6 0 77777777777 2 3 444444444444 888 3 3 3 6 0 6 8888 1 44 0 8888888 777 777 4 222 4 4 222 99999999999999999999999999999 4444444444444 777 9 5 555555555 666666 0 66 66 5 99999999999 44 7 3 3 00 4 66 1 2 666 3 222222222 4 8 2222 8 1 3 0 5555 9 3
lowQualScore : ..... . . .. ....... . .... ... . . .. ... . .. ..................................... . . ................... . . ........... . . ............ ... . . . . . . .... . .. . ....... ... ... . ... . . ... ............................. ............. ... . . ......... ...... . .. .. . ........... .. . . . .. . .. . . ... . ......... . . .... . . . . .... . .
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 1 22 000 1 55 4444444444444444444444444444444444444 2 9 4444444444444444444 0 7 00000000000 7 1 666666666666 555 1 1 5 3 8 2 8888 9 66 1 9999999 222 888 4 222 4 4 222 11111111111111111111111111111 4444444444444 888 6 3 666666666 444444 1 00 99 3 66666666666 44 3 6 6 00 1 99 2 2 111 3 444444444 0 0 2222 0 1 0 8 5555 4 2
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------A----------CC----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TT-TAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------AC---------CC----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TT-TAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCGCT-GC--A---GCCACGA-GGCCT-GATGA--AG--------AA---------C------AT-GA---------CGT------------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTC---TTAGATCC-TCAAAAG-------TT--ATG---T-C---GA-A-TT---CTG-------------TG--------------TTTAACAATTGCATTTTTAACTG---AAAGTAAGGCAAATT---ACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--GATGTAGA-TT-TAC-T-CTGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-A-T-CTTTCCC---AT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------A-----------------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------A---------------------AATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTGCT-CC--A---GCAACGA-GGTCT-GACGA--TG--------AA---------CT----AAT-
gi|13 : -C-C-GCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATActcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-A-TCTTTTTT----AT-TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : C----GA--GATCATACTGTCGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATCT-----AATA------CT--ATG---TGCTCAGC-A-AG---TGG-------------AG--------------TTT-------------TCAATTT---TGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCGGT-GT--AAT-GTCAC---AGCC------A--TA-------------------CC----G--------TTCAGT-GTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : ttttt-C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTGCTACCAGA---GCAACGA-GGTCTGGACGA--TG--------Ag
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTGTT-CC--A---TTCACGA-GGTCT-GACGAG-TGCTACAACCACGAGTTTTA-CC----GAT-GAGGATGCTCTTGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGT---ACAGATCA-TCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTT---CAAGCTCAGCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGGA-----A-CTCTAG-C-T-GC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTCAAT-TCCT-CGAAATTGAATA----TCTACAGTGTA-CATTCTATAa
gi|20 : ATT-CTC---T-AAATCC-TCCGAAT-------TT--ATG---T-CT--GG-A-ATATGCTGTGTTCAACAATGGCG--------------TTT-------------TCAGCTT---CAAA-TAAGCAGAC-------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTGTT-CC--A---TTCACGAAGGTCT-GACGAAGTGCTACAACCACTGGTTTTTACT----GATTGAGGATCTCTTC--TCCCTTC---------C---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGT---ACAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTTTTTCAAGCTCAGC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGGA-----ACTC-TAG-C-T-G--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTTAAT-TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GT--AACTGCTACAA-AAC----ACGA------------AC---------CCTAAGGAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCA-ATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGGA-----T-GT-TAG-TGT-AC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGT-GT--AACTGCTACAA-A--C---ACGA------------AC---------CCTAAGGAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCATATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG------A-TG-TAG-TGT-AC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTGCT-CC--A---GCCACGA-GGTCT-GA---------------------------C----GAT-GAACATACTGTCGCT-CCTTT---------C---------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---C-A-ATCCATCCATCCTCCATTAATT-CTC---GCAAATCC-TTTGAATATATCAATTGACTGTGTT-C---AACA-AT----GG-------------CG--------------TTT-------------TCAACTT---CGAA-TAGGCTAA-GCAGAC-GTTTATCTG---------TGACCA-CATC--------------------------C-C-GC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTC---TCAGATCG-CCTGAAT-------TT--ATG---T-C---CA-ATATT--CTG-------------TGAACAACACTAGTGTTTT-------------TCACCTT---CAAA-TAAGCAAACG-------TTTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAA-TT-TACTC-C-AC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------A-----------------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTGCT-CC--A---GCCACGA-GGCCT-GACGA--TG--------A-----------------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 1111111 111111111 9999999999999999999999999999999999999999999999999 5555555555555555555 11111111111 333333333333 1111111 111 111 77777777777777777777777777777 2222222222222 1 222222222 111111 33333333 11 1 333333333 3333 2222
lowQualScore : 99999 3 2 88 1111111 6 9999 555 1 222222222 3 44 999 3 3 0 2222222222222222222222222222222222222222222222222 2 9 8888888888888888888 6 0 77777777777 2 3 444444444444 888 3 3 3 6 0 6 8888 1 44 0 8888888 777 777 4 222 4 4 222 99999999999999999999999999999 4444444444444 777 9 5 555555555 666666 0 66 66 5 99999999 2 44 7 3 3 00 4 66 1 2 666 3 222222222 4 8 2222 8 6 3 0 5555 9 3 5
lowQualScore : ..... . . .. ....... . .... ... . ......... . .. ... . . . ................................................. . . ................... . . ........... . . ............ ... . . . . . . .... . .. . ....... ... ... . ... . . ... ............................. ............. ... . . ......... ...... . .. .. . ........ . .. . . . .. . .. . . ... . ......... . . .... . . . . .... . . .
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 333333333 1 22 666 1 1 8 2222222222222222222222222222222222222222222222222 2 9 4444444444444444444 0 7 00000000000 7 1 666666666666 555 1 1 5 3 8 2 8888 9 66 1 9999999 222 888 4 222 4 4 222 11111111111111111111111111111 4444444444444 888 6 3 666666666 444444 1 00 99 3 66666666 1 44 3 6 6 00 1 99 2 2 111 3 444444444 0 0 2222 0 0 0 8 5555 4 2 0
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------ACC-----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------ACC-----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCG---------CT-GC--A---GCCACGA-GGCCT-GATGA--------------AG-----------------AAC------AT-GA---------CGT------------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTC---TTAGATCC-TCAAAAG-------TT--ATG---T-C---GA-A-TT---CTG-------------TG--------------TTTAACAATTGCATTTTTAACTG---AAAGTAAGGCAAATT---ACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--GATGTAGA-TTTAC-T-CTGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-A-T-CTTTCCC---AT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A------------AATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTG---------CT-CC--A---GCAACGA-GGTCT-GACGA--------------TG-----------------A
gi|13 : -C-C-GCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-A-TCTTTTTT----AT-TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : C-----GA--GATCATACTGTCGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATCT-----AATA------CT--ATG---TGCTCAGC-A-AG---TGG-------------AG--------------TTT-------------TCAATTT---TGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCG---------GT-GT--AAT-GTCAC---AGCC------A--------------T------------------ACC-----G--------TTCAGT-GTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : ttttt-C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTG---------CTACCAGA---GCAACGA-GGTCTGGACGA--------------TG-----------------Ag
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTG---------TT-CC--A---TTCACGA-GGTCT-GACGAG-------------TGCTACAACCACGAGTTTTACC-----GAT-GAGGATGCTCTTGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGT---ACAGATCA-TCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTT---CAAGCTCAGCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTAG-C-T-GC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTCAAT-TCC-TCGAAATTGAATA----TCTACAGTGT-ACATTCTATAa
gi|20 : ATT-CTC---T-AAATCC-TCCGAAT-------TT--ATG---T-CT--GG-A-ATATGCTGTGTTCAACAATGGCG--------------TTT-------------TCAGCTT---CAAA-TAAGCAGAC-------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTG---------TT-CC--A---TTCACGAAGGTCT-GACGAAGTGCTACAACCACTGGTTTTT-----------ACT-----GATTGAGGATCTCTTC--TCCCTTC---------C---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGT---ACAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTTTTTCAAGCTCAGC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTAG-C-T-G--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTTAAT-TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCG---------GT-GT--AACTGCTACAA-AAC----ACGA---------------------------------ACCCTAAGGAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCA-ATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGGA-----T-GTTAG-TGT-AC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGTGTAACTGCT-AC--A---AACACGA-ACCCT-AA------------------G-------------------------GAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCATATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG------A-TGTAG-TGT-AC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTG---------CT-CC--A---GCCACGA-GGTCT-GA--------------------------------------C-----GAT-GAACATACTGTCGCT-CCTTT---------C---------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---C-A-ATCCATCCATCCTCCATTAATT-CTC---GCAAATCC-TTTGAATATATCAATTGACTGTGTT-C---AACA-AT----GG-------------CG--------------TTT-------------TCAACTT---CGAA-TAGGCTAA-GCAGAC-GTTTATCTG---------TGACCA-CATC-------------------------C-C-GC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTC---TCAGATCG-CCTGAAT-------TT--ATG---T-C---CA-ATATT--CTG-------------TGAACAACACTAGTGTTTT-------------TCACCTT---CAAA-TAAGCAAACG-------TTTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAA-TTTACTC-C-AC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 1111111 111111111 9999999999999999999999999999999999999999999999999 5555555555555555555 11111111111 333333333333 1111111 111 111 77777777777777777777777777777 2222222222222 1 222222222 111111 33333333 11 1 333333333 3333 2222
lowQualScore : 99999 3 2 88 1111111 6 9999 555 1 222222222 3 44 999 3 3 0 2222222222222222222222222222222222222222222222222 2 9 8888888888888888888 6 0 77777777777 2 3 444444444444 888 3 3 3 6 0 6 8888 1 44 0 8888888 777 777 4 222 4 4 222 99999999999999999999999999999 4444444444444 777 9 5 555555555 666666 0 66 66 5 99999999 2 44 7 3 3 00 4 66 1 2 666 3 222222222 4 8 2222 8 6 3 0 5555 9 3 5
lowQualScore : ..... . . .. ....... . .... ... . ......... . .. ... . . . ................................................. . . ................... . . ........... . . ............ ... . . . . . . .... . .. . ....... ... ... . ... . . ... ............................. ............. ... . . ......... ...... . .. .. . ........ . .. . . . .. . .. . . ... . ......... . . .... . . . . .... . . .
lowQualScore : 11111 6 3 66 8888888 2 4444 444 1 333333333 1 22 666 1 1 8 2222222222222222222222222222222222222222222222222 2 9 4444444444444444444 0 7 00000000000 7 1 666666666666 555 1 1 5 3 8 2 8888 9 66 1 9999999 222 888 4 222 4 4 222 11111111111111111111111111111 4444444444444 888 6 3 666666666 444444 1 00 99 3 66666666 1 44 3 6 6 00 1 99 2 2 111 3 444444444 0 0 2222 0 0 0 8 5555 4 2 0
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------ACC-----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------ACC-----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCAACCTACATAA-ACCC-----------AATATGTCG---------CT-GC--A---GCCACGA-GGCCT-GATGA--------------AG-----------------AAC------AT-GA---------CGT------------------------------ACATG----------TCCAGG-AGCTTAGCATC-AG-T---TTG-ATTCAACCATCCTCCGTCAATT-CTC---TTAGATCC-TCAAAAG-------TT--ATG---T-C---GA-A-TT---CTG-------------TG--------------TTTAACAATTGCATTTTTAACTG---AAAGTAAGGCAAATT---ACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--GATGTAGA-TTTAC-T-CTGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-A-T-CTTTCCC---AT-TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A------------AATATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCAACCTACCCGC-ACTTCAT-T-TA---CGTCTGTTG---------CT-CC--A---GCAACGA-GGTCT-GACGA--------------TG-----------------A
gi|13 : -C-C-GCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-A-TCTTTTTT----AT-TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : C-----GA--GATCATACTGTCGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---C-C-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATCT-----AATA------CT--ATG---TGCTCAGC-A-AG---TGG-------------AG--------------TTT-------------TCAATTT---TGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCAATCTACCTGC-ACTTCG--TCTA---AATCTGTCG---------GT-GT--AAT-GTCAC---AGCC------A--------------T------------------ACC-----G--------TTCAGT-GTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---T-G-ATTC
gi|18 : ttttt-C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-AACCTAACCG--ACTTCAATT-TAGCGATTATGTTG---------CTACCAGA---GCAACGA-GGTCTGGACGA--------------TG-----------------Ag
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCA-------TGC--TTTCG--T-GA---AGTCTGTTG---------TT-CC--A---TTCACGA-GGTCT-GACGAG-------------TGCTACAACCACGAGTTTTACC-----GAT-GAGGATGCTCTTGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGT-G-ATCCATCCATCCTCCGTTAATT-CGT---ACAGATCA-TCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTT---CAAGCTCAGCCAATGC-CACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTAG-C-T-GC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTCAAT-TCC-TCGAAATTGAATA----TCTACAGTGT-ACATTCTATAa
gi|20 : ATT-CTC---T-AAATCC-TCCGAAT-------TT--ATG---T-CT--GG-A-ATATGCTGTGTTCAACAATGGCG--------------TTT-------------TCAGCTT---CAAA-TAAGCAGAC-------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : -C-C-GC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA-------TGC-TTTTCG--T-GA---AGTCTGTTG---------TT-CC--A---TTCACGAAGGTCT-GACGAAGTGCTACAACCACTGGTTTTT-----------ACT-----GATTGAGGATCTCTTC--TCCCTTC---------C---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--T-GTGTC--TCC--TCTCCGT-AATT-CGT---ACAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---CTG-------------CG--------------TTT-------------TCAATTTTTTCAAGCTCAGC-AATGC-CACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTAG-C-T-G--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-G-TTTTTTTTTTTAAT-TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CAACCGACCTGT-ACTTCG--TCTA---AATCTGTCG---------GT-GT--AACTGCTACAA-AAC----ACGA---------------------------------ACCCTAAGGAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCA-ATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGGA-----T-GTTAG-TGT-AC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCAACCGACCTGT-ACTTCG--TCTA---AATCTGTCGGTGTAACTGCT-AC--A---AACACGA-ACCCT-AA------------------G-------------------------GAT-GAGCATGCC-TTGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---T-G-ATCCATATAATTTCC--CAATTTCGC---TCATATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---CTGTTTAACAATTG--CG--------------TTT-------------TTAACTT---TAAG-TAGGCCAACAC-GGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG------A-TGTAG-TGT-AC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGTAC---ATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCAACCTGCCTGC-ACGTTG--T-CA---AAATACTTG---------CT-CC--A---GCCACGA-GGTCT-GA--------------------------------------C-----GAT-GAACATACTGTCGCT-CCTTT---------C---------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---C-A-ATCCATCCATCCTCCATTAATT-CTC---GCAAATCC-TTTGAATATATCAATTGACTGTGTT-C---AACA-AT----GG-------------CG--------------TTT-------------TCAACTT---CGAA-TAGGCTAA-GCAGAC-GTTTATCTG---------TGACCA-CATC-------------------------C-C-GC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---T-A-ATCCATCCATTCTCCGCCAGGT-CTC---TCAGATCG-CCTGAAT-------TT--ATG---T-C---CA-ATATT--CTG-------------TGAACAACACTAGTGTTTT-------------TCACCTT---CAAA-TAAGCAAACG-------TTTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAA-TTTACTC-C-AC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCAACCTACCTGCCACTTCG--T-TA---AGTCTGTTG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------A--------AT-----ATCCCATCGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---T-G-ATCCATCCGTCCTCCATCAAAT-CT
blockSeqs : GTGGA A C AG TTTTTTA C ATT GCG T GTGTAACTG A AG ACT A G AGTGCTACAACCACTGGTTTTTACTGATTGAGG C A TATACCTTGA A CAAACACTTTG T C ATAATATCAAA GTG . T G A T GGAA G AA ATATCAA GAC TGT G TCA C T ATG TGAACAACACTAGTGT . TTT C T TGCCACGA GTGTAA TT . T ATGTAAA C CT G . C AG A AC C T AAT T GATCGG T T TTCA G T C TTGC A T A
blockSeqs : . . C A . C TT . T . . . AT . . GTGCTACAACCACGAGTTTTACCGATGAGG C A TATACCTTGA A A T . TCAACGTTAAC G . . G A T A G T A A . . T . . T TGTTCAACAATGGCG . . C C TGCCACGA ATTAC A . T AAC C G G . . AG A AC C T GA T GATCGG . T TTTA G T T TTGC A T A
blockSeqs : . . A . . . TC . T . . . . . . ACCCTAAGGATGAGC A G GAAAACTTGC C A A . TTAATGTTAAC . . . A A . T A A . C . . . . . . TTTAACAATTGCG . . C A CACGGTGG ATCAC A . C AAC T G . . . . A AC C T GA T GTGTGT . . C . T C TTGC A T A
blockSeqs : . . G . . . TC . C . . . . . . GGATGAGC T G TATACCTTGA A A A . TTAATGTTAAC . . . A G . A G C . A . . . . . . TTTAACAATTGCG . . . C CACGGTGG ATCAC A . C AT G G . . . . C AT T A GA T GTGT . . C . T C . A T A
blockSeqs : . . G . . . TC . T . . . . . . CGATGAAC G C TATACCTTGA A C A . TTAATATCAAA . . . A G . T T C . C . . . . . . AG . . . C GCAGACG ATAC A . C A T G . . . . A AC C T AA . AT . . . . T T . A T .
blockSeqs : . . G . . . T . T . . . . . . TGAAAT C T C A A A . TTACTATCAAA . . . A A . T A C . C . . . . . . CG . . . T CG G C . . . . . . . . . C AT T T GA . AT . . . . A C . . . .
blockSeqs : . . A . . . T . T . . . . . . TGAAT G G C A A A . TTAATATTGA . . . A G . G G C . C . . . . . . CG . . . A CG . T . . . . . C AT T T AA . AT . . . . A T . . .
blockSeqs : . . C . . . T . C . . . . . . TACCG G A C A A A . TAATATTGA . . . A A . T . G . A . . . . . . CG . . . . . . . . C GA C . AA . AT . . . . . T .
blockSeqs : . . C . . . T . C . . . . . . TGAAT A A C A A T . . . . . G A . . . . . . . . . . . AT . . . . . . .
blockSeqs : . . . . . . T . T . . . . . . TGAAT C . C . A T . . . . . G . . . . . . . . . . . .
blockSeqs : . T . T . . . . . . C . C . . . . . . . . . . . .
blockSeqs : . T . T . . . . . . C . . . . . . . . .
blockSeqCons : T*** TGAGN******************************************** C****************** TTAATATCGA** ************* CGCCGCGG* ** AA****** AC GA* ****
originalCons : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCG--T-TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGA--------------TG-----------------ACC-----GAT-GAGCATNCCGTCGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-AA-T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGC-GACGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTTC---AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
finalCons : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCAACCTACCTGC-ACTTCGT---TA---AGTCTGTCG---------CT-CC--A---GCCACGA-GGCCT-GACGATGAGN--------------------------------------------ATNCCGTCGTTCCCTTCC------------------AAAAACCTG----------ACCAAG-AGCTTAATATCGA--T---T-G-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---CTG-------------CG--------------TTT-------------TCAACTT---CAAGCTAGGCNAACGCCGCGG-TTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGAA------TTTAG-C-C-GC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-A-TCCTTTTT----AT-TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC
Alignments
lowQualScore : 1111111 22222222222222222 2222222222222222222222222222222222222222 1111111111 666666666666666666666666666666666666666666666666666666666666 1111111 111 999999999999999999999999999999999999999999999999 1 222222 111111 33333333 11111 11 1 333333333 1111 111 2222
lowQualScore : 99999 3 2 88 1111111 3 66 11111111111111111 555 7777777777777777777777777777777777777777 44 44 44 3333333333 3 2 2 2 44 1 7 7777 444444444444444444444444444444444444444444444444444444444444 888 3 3 6 0 6 8888 1 44 0 8888888 777 777 4 222 4 4 999999999999999999999999999999999999999999999999 777 9 5 444444 0 666666 0 66 66 5 99999999 2 00000 3 00 4 66 1 2 666 3 222222222 4 7777 444 6 3 0 5555 9 3 5
lowQualScore : ..... . . .. ....... . .. ................. ... ........................................ .. .. .. .......... . . . . .. . . .... ............................................................ ... . . . . . .... . .. . ....... ... ... . ... . . ................................................ ... . . ...... . ...... . .. .. . ........ . ..... . .. . .. . . ... . ......... . .... ... . . . .... . . .
lowQualScore : 11111 6 3 66 8888888 1 33 00000000000000000 444 4444444444444444444444444444444444444444 66 22 22 5555555555 1 9 9 9 33 0 8 1111 777777777777777777777777777777777777777777777777777777777777 555 1 5 3 8 2 8888 9 66 1 9999999 222 888 4 222 4 4 444444444444444444444444444444444444444444444444 888 6 3 555555 2 444444 1 00 99 3 66666666 1 22222 6 00 1 99 2 2 111 3 444444444 0 0000 000 0 0 8 5555 4 2 0
consensus : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCA-ACCTACCTGC-ACTTCG--T-T------------A---AGTCT------------------GTC---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-G-AACATNCCGT----CGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-GA-T---TG-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---C-------------TG-------------CG--------------TTTTCAACTT---CAAGCTAGGCNAACGCNGCGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTA-G-C-CGC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
Reference ( family-8174 ) : TCTTACACACCCTGGA-----A-GTCNAA--TAAA-------GCA-ACCTACCTGC-ACTTCG--T-T------------A---AGTCT------------------GTC---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-G-AGNATNCCGT----CGTTCCCTTC---------C---------AAAAACCTG----------ACCAAG-AGCTTAATATC-GA-T---TG-ATCCATCCGTCCTCCGTCAATT-CTC---NCAGATCC-TCTGAAT-------TT--CTG---T-C---GA-A-AT---C-------------TG-------------CG--------------TTTTCAACTT---CAAGCTAGGCNAACGCCGCGGTTTCTCCGT-CACTGATTGACCA-NATCAC--ACCACGGA-----A-TTTA-G-C-CGC-TC--CTCGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACACCTG---AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCGAATA----TTTATAATGTAACATTCTATA
gi|1 : TTACACGCCCTGGA-----G-GTCAAA--CAAA-------GCA-ACCTACATAA-ACCC-----------------------AATAT------------------GTC---------G---------CT-GC--A--GC----------CACGAGGCCT-GAT-GAA-G-AACATGACGT-------------------------------------ACATG----------TCCAGG-AGCTTAGCATCAGT-T---TG-ATTCAACCATCCTCCGTCAATT-CTC---TTAGATCC-TCAAAAG-------TT--ATG---T-C---GA-A-TT---CTGTGTTTAACAATTG-------------CA--------------TTTTTAACTG---AAAGTAAGGCAAA--TTACGTCTTCCCCAT-CTTTG-TT-ACCA-CTTCACTAACCA--GATGTAGA-TTTACT-C-TGC-AC--CTCGTGGTGTCAGTTGCGTTAAATTA------TA--------TTTC-TTTTACACCTT----T---TTC-ATCTTTCCC----AT---TCCTTGGAAATTAAATA----TTT
gi|10 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCA-ACCTACCTGC-ACTTCG--T-T------------A---AGTCT------------------GTT---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-G-AATATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---TG-ATCCATCCGTCCTCCATCAAAT-Cgcatttcatttactcttagatgttgtttttttttttaattatttattcaatgaaaatctaaggaactacatcttgtgttggccgattgtta
gi|11 : tcattcgtgtttatctttcTTACACACCCTGGA-----AAGTCCAA--TAAA-------GCA-ACCTACCTGCCACTTCG--T-T------------A---AGTCT------------------GTT---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-GAAATATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---TG-ATCCATCCGTCCTCCATCAAAT-C
gi|12 : TACACACCCTAAA-----A-ATAAAA--TAAA-------GCA-ACCTACCCGC-ACTTCAT-T-T------------A---CGTCT------------------GTT---------G---------CT-CC--A--GC----------AACGAGGTCT-GAC-GAT-G-A
gi|13 : -C-CGCCTC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATAactaatctcagcgagattattttgacttccaaatctcaaacaagtgtctcaaaaagtgattcgggaattcttgtt
gi|14 : caacttccaataagccaacttcgactatcgtatcTTA-TTTTAGACCT----AT---TTC-ATCTTTTTT----AT---TCCTACGAAATTAAATA----TTTGTAAT
gi|15 : C-GA--G-ATCATACTGT----CGTTCCTTTCGAAAACTTGC---------AAACACTTT----------ACCAAG-AGTATAATATCAAA-T---CC-ATCCATCCACCCTTCAGCAATT-CTCGGAACAGATCT-----AATA------CT--ATG---TGCTCAGC-A-AG---T-------------GG-------------AG--------------TTTTCAATTT---TGAAC-AGGCTAAtcatattgccttagatgttgttttcaaatatttattctataaaaacctattgaactaccggtatatcttgtgttgtcctatcattatttaggtcaattg
gi|16 : -C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTCGATactg
gi|17 : tcaacttccaataagccaacttcgactatcgtatcTCTCGAACACCCTGGAGTGGAA-GT--AA--CAAATTTTTTAGCA-ATCTACCTGC-ACTTCG--TCT------------A---AATCT------------------GTC---------G---------GT-GT--AATGT----------CAC--AGCC---------------ATACCGTTCAGTGTTCCCTTC---------C----------AGAACTTG----------CAAAAGCAGCTCAACGTT-AACT---TG-ATTC
gi|18 : ttttt-C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTATTTTTACATCT----AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCAAGTATTGCTTTAT-ATGTAATATTC
gi|19 : tcTTTTACACACACT-AA-----A-ATAGAAAGTAAA-------G-A-ACCTAACCG--ACTTCAATT-T------------AGCGATTAT------------------GTT---------G---------CTACCAGA--GC----------AACGAGGTCTGGAC-GAT-G-Ag
gi|2 : ccgttcgtgttttatcttcgTCTTACATACCCTGGA-----A-ATCGAA--TAAA-------GCATGCTTTCGTGA-AGTCTG--T-TGTTCCATTCACGA---GGTCT------------------GAC---------GAGTG-----CT-AC--A--AC----------CACGAGTTTT-ACC-GAT-G-AGGATGCTCT----TGCTCCCTTC---------C---------AGAAACATG----------ACCAAG-AGCTTAATATT-GA-TGTGTG-ATCCATCCATCCTCCGTTAATT-CGT---ACAGATCA-TCTGAAC-------TT--CTG---T-T---GA-A-AT---C-------------TG-------------CG--------------TTTTCAATTT---CAAGCTCAGCCAATGCCACGATTTCTCCAT-TACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTA-G-C-TGC-TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTCAAAA-TTACCTTTA-TTTTATACCTG---ATCGGTTG-GTTTTTTTTTTCAAT---TCC-TCGAAATTGAATA----TCTACAGTGT-ACATTCTATAa
gi|20 : ATT-CTC---T-AAATCC-TCCGAAT-------TT--ATG---T-CT--GG-A-ATATGC-------------TGTGTTCAACAATGGCG--------------TTTTCAGCTT---CAAA-TAAGCAGAC------GTTTCTCTGTGTAATGATTGACCATTATCAC--ATC
gi|21 : -C-CGC-TC--CTAGTGTCTTCAATTGAGTTGAATTGACGCTCTAGA-TTACCTTTA-TTTTACATCT----AT---TTC-ATCCTTTTT----AT---TCCTTCGAAATCAAGTA----
gi|3 : tatcTACATACCCTGGA-----A-ATCGAAA-TAAA-------GCA--------TGC-TTTTCG--T-G------------A---AGTCTGTTGTTCCATTCACGAAGGTCTGACGAAGTG---------CT-AC--A--AC----------CACTGGTTTT-TACTGATTG-AGGATCTCTT----C--TCCCTTC---------C---------AGA--CATG----------ACCAAG-AGCT-AATATT-GA-TG--TGTGTC--TCC--TCTCCGT-AATT-CGT---ACAGATCAATCTGAAC-------TT--CTG---T-T---GA-A-AT---C-------------TG-------------CG--------------TTTTCAATTTTTTCAAGCTCAGC-AATGCCACGATTCCTCCAT--ACTGATAGACCA-AATCAC--ACCATGGA-----ACTCTA-G-C-TG--TC--TTCTTGTCTTCAGTTGAGTTGACTTGATGTTC-AAA-TTACCTTTATTTTTATACCTG---ATCGGTTG-GTTTTTTTTTTTAAT---TCC-TCGAAAT-GAATA----TCTACAGTGT-ACATTCTA
gi|4 : CA-ACCGACCTGT-ACTTCG--TCT------------A---AATCT------------------GTC---------G---------GT-GT--A--ACTGCTACAAAACACGAACCCT-AAG-GAT-G-AGCATGCC-T----TGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---TG-ATCCATATAATTTCC--CAATTTCGC---TCA-ATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---C-------------TGTTTAACAATTG--CG--------------TTTTTAACTT---TAAG-TAGGCCAACACGGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGGA-----T-GTTA-G-TGTAC-TCAGCTCTTGTCTTCAATT---T----TTG----T------TTACCTTTA-TCATACACCTGTGTGT---TCT-ATTCCTTGT----ACATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATatat
gi|5 : tttCA-ACCGACCTGT-ACTTCG--TCT------------A---AATCT------------------GTC---------GGTGTAACTGCT-AC--A--AA----------CACGAACCCT-AAG-GAT-G-AGCATGCC-T----TGTTCCCTTC---------C---------AAT--TCTT------------------GCTTAATGTT-AACT---TG-ATCCATATAATTTCC--CAATTTCGC---TCATATTC-TCTTAAT-------TT--CTG---T-C---GA-A-AT---C-------------TGTTTAACAATTG--CG--------------TTTTTAACTT---TAAG-TAGGCCAACACGGTGGTTTCTCCAT-CACTGATTGACCA-AACCAC--ATCACGG------A-TGTA-G-TGTAC-TCAGCTCTTGTCTTCAATT---TTG--T-------------TTACCTTTA-TCATACACCTGT--GT---TTCTATTCCTTGT----ACATGTACATC-AAATTGAA-G----TTTATAA--TAACATTCTATtaaatgcatgcactgcttacaattatttattcca
gi|6 : tttACACATCCTGGA-----A-GTCAAA--TAAA-------GCA-ACCTGCCTGC-ACGTTG--T-C------------A---AAATA------------------CTT---------G---------CT-CC--A--GC----------CACGAGGTCT-GAC-GAT-G-AACATACTGT----CGCT-CCTTT---------C---------AAAAACTTGCAAACACTTTGCCAAG-AGCTTAATATCAAA-T---CA-ATCCATCCATCCTCCATTAATT-CTC---GCAAATCC-TTTGAATATATCAATTGACTGTGTT-C---AACA-AT-----------------GG-------------CG--------------TTTTCAACTT---CGAA-TAGGCTAA-GCAGACGTTTATCTG---------TGACCA-CATC--------------------------C-CGC-TT--CTCGTGTCTTCAATTGACGTGCCTTGATATTCTAAATTTACATTTA-TTTTACACTTtaaatgcatgcactgcttacaattatttattcca
gi|7 : CTTG---------C---------AAAAGCTAC----------ACCAAG-AACTTACTATC-AAAT---TA-ATCCATCCATTCTCCGCCAGGT-CTC---TCAGATCG-CCTGAAT-------TT--ATG---T-C---CA-ATATT--C-------------TG-------------TGAACAACACTAGTGTTTTTCACCTT---CAAA-TAAGCAAACG------TTTCT---------GACCGACCA-TATCAC--ACCCCAGATGTAAA-TTTA-CTC-CAC-TC--CTCGCGTCTTCAACAGAGTTGACTGGGAGCTCTAAA-TTACTTTTA-TTTTACACCa
gi|8 : TCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCA-ACCTACCTGC-ACTTCG--T-T------------A---AGTCT------------------GTT---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-G-AATATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---TG-ATCCATCCGTCCTCCATCAAAT-CT
gi|9 : aaaaaaaaatattataaatgatataaattcattcgtgtttatcttcTCTTACACACCCTGGA-----A-GTCCAA--TAAA-------GCA-ACCTACCTGCCACTTCG--T-T------------A---AGTCT------------------GTT---------G---------CT-CC--A--GC----------CACGAGGCCT-GAC-GAT-G-AATATCCCAT----CGTTCCTTTC---------TATACCTTGAAAAAACCTG----------ACCTAG-AAC------------T---TG-ATCCATCCGTCCTCCATCAAAT-CT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CCTTAGATGTTTTCTCAATTATTTATTTGATGAAAATCTAAGGAACTATATCTTGTGTTGGCCGATCGTTATTGGGTC