lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 222 111 55555 222222 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 1111 66666666666666666 55555555555555 11 55555555555555 11 11 111111111111111111111111 444444444444 111 1111111 1 1 111 11 555555555555555555555 111 1 1111 3333 1 2222222 11 6666666666666666666 1111 2222 1111 999999999999999999999999999999 11 2 111 2 1
lowQualScore : 4 777 999 00000 222222 8 33 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 5 2 0 0 8 8888 00000000000000000 77777777777777 3 4 5 4 00 55555555555555 2 7 33 4 11 222222222222222222222222 6 3 6 1 888 333333333333 5 555 5 5 8888888 1 3 5 2 5 6 111 11 666666666666666666666 000 1 6 0 1 7777 3 99 4 77 5 77 7777 5 6 1 1111111 6 55 6666666666666666666 1111 55 0000 6 5 6666 99 555555555555555555555555555555 4 44 3 0 888 0 5
lowQualScore : . ... ... ..... ...... . .. ............................................................................................. . . . . . . .... ................. .............. . . . . .. .............. . . .. . .. ........................ . . . . ... ............ . ... . . ....... . . . . . . ... .. ..................... ... . . . . .... . .. . .. . .. .... . . . ....... . .. ................... .... .. .... . . .... .. .............................. . .. . . ... . .
lowQualScore : 7 333 000 00000 555555 8 88 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 5 2 0 8 8 0000 44444444444444444 88888888888888 5 8 7 0 44 22222222222222 7 5 88 0 55 888888888888888888888888 7 7 3 0 888 999999999999 0 999 7 7 6666666 6 0 3 7 2 7 888 00 555555555555555555555 000 9 7 4 9 3333 5 55 3 99 1 99 9999 7 7 7 7777777 7 00 0000000000000000000 5555 22 5555 0 0 5555 22 222222222222222222222222222222 0 00 0 0 555 0 0
consensus : AAACGNT-A-AAC-GTAAAATTCTGAAATTGA---ACAGAAAA--AAA-TTA-GC-TAT-NCCA----TT-CTG---CATT---TT-ATGAATAATCAA---AATTTAAC--A----ATAAA---CA-----GTCACACCTGAGCGATTTCACGCGTTA-TTTAAACTCGCTGATAAGA--AGNGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCATT-TGCATTGA-TGCAGGCTACACATCT-----CGGCCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-TGTGG-CAGTT-T--CGT--T-T-CCA--TATT-GANCANTGCTCGCCT---AGCAA-C---AN-A---TT-TTGTCGCAAACCC-GCTTCAA-GCG-------TACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTT--CGAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATAA-GGG-AAAT-CAT-GTTGTGTN-CATTTAAGCATGACNACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTC-G-CTTA----GTGCTTTTATTATATACNNCANGNNCAANATATCCAGCAATNAATCTAACATA
Reference ( gi|1 ) : AAACATTGA-AAC-GTAAAA-----AAAT-GA---ACAGAACA--AA--TTA-AC-TAT-GCCA----AT-CTA---CACT---TA-ATGAAAAATCAA---AATTTGAC--A----ATAAACTTCACTTAAGTCACAATTGAACGATTTCACGTGTTA-TTTAAACTCGCAGAAAAGA--AATATGTGTC-----ACAACTTTA-GTACTCTGT-ATGTCCTCCGTT-TGCACTGG-TGCAGGCTACACATATG----CCGT-GTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGG-AA-------CAT--T--------TATT-GAGCAATGCTTGCCT---AGCAA-C---AG-G---TT-TTGTCACACAGCC-GCTTCAA-GCA-------TACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATAT----GCCTG-TTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTT--TGAATTTTATATTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATAT-GGG-AAACGCAT-GCTGTAAA-CATTTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTC-GTCTTACA--GTGCTTTTGTTA-A---CTTATGTGTAAAATAT-CAGCATTGAAT-TAAAATAA
gi|10 : AAACGCT---AAC-G-GAAA-----AAAT-AAGTGATTGAACAGGAA--T-A-ACATAT-GCCATTTCATTCTG---CATT---TT-ATAAATAATCAA---AATTTAAC--A----ATGAAAATCACGTTTGTCATCTTTGAGTGATTTCACACGTTA-TTTCAACTCGCTGGTAAGA--AGAGTGTTTC-----ACGACTTTA-GTACTTCGT-TTGAACCCTGTT-TGCATTGA-TGAAGGAAACACGTACT----CGGT-GCATCAA
gi|3 : ACAATTA-AAC-CTAAAATTCTGAAATTGA---ACAGAAAA--AAAATTA----TAT-TTCA----TT-CTA---CATT---TT-ATGAATATTGAA---AA----AA--A----AAAAATT-------GGTCACACCTGAGCGATT-CACGCGTTT-TTTGAACTCACTGATAAGA--A----GAGT------ATAACTTT---------------TCCCCCATT-TACATTGA-TGCTGGCTACATATCTGAGAACAGC-GCAACGATCCGATCAAATTGCGTAAGAATTGC-TGTGG-CA-------CGT--TCTGCCATATATT-CAGCAGTGCTCGCCT---AGCAAAC---AACA---TT-TTGGCGCTAAACC-ATTTCAA-GCA-------TAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAAT----GCCCG-TTG---TTCTG--------------TGGGAGTCGTTAGAGTGGATG--ATGT--TGAATTT--TATTCTCAG-C
gi|9 : attttacTTGATAACCGTAAAATTCTGAAATTGA---GCAGAAAA--AAA-TTATGC-TAT-TTCA----TT-CTG---TATT---CT-ATGAATAATCAA---AATTTAACTGA----ATAA----CA--------ACA--TGAACAATTTCACGCGTTA-TTTAAACTGGTTGATAAGAGCAACAT-T-TC-----ACAACTTT---------------TCCCCCATT-TGCACTGA-TGCAGACTACACATGTT----TGAC-TCATCGACCCAGTCAt
gi|6 : gtatgattttaagat-----AATT-GA---ACAGAAAA--AA--TT-----TATTGCTA-----T-CTATTTCATTCTCTATATGATGAATTAACCAAATTTAAT--ACAGGATAA-------------CACACCCGAGCAATT-CACATGTTAATTTAAAAT-GCTGATAAGA--CAAGTGTTTCCACAAACAACTTTAGGTACTTCATAATGTCCCCCCTTGTG-ATTGATTGC------CACTTACA----C------ATCAAT---------TTGCATGAGAA-TGCACGTGGCAAGTTCTGTCATAAT--------TATG-CAACAGTGCTTGTCTTACAGTAA-C---AG------T-TTGTCACatttgt
gi|2 : aaaattcatGATAAGA--AGT--GTTTT-----ATAACTCTA-GTACTTCGT-ATGTCCCCCATT-TGCATTGA-TGCAGGGTACACATCTT----TGGC-GCATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGG-CA-------CGT--TCTTCCATATATT-GAGCNNNNNNNNNNN---NNNNN-N---NN-N---NN-NNNNNNNNNNNNN-NNNNNNN-NNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTGT-CTCTAAAAT----GTCT--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTT--CG-ATTT----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATAA-GGG-AA----TT-GTTGTGTT-CATTGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTC------ACAATGTGCTTCAAATA-A---AGTATGCCCAACATAT-CAGCAATAAATCTAACATAcaaac
gi|5 : tngttTCCATA-TGCATTTA-TGCAAGCTACACATCT-----TCGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGG-gaattta
gi|18 : T-TGCATTGA-TGCAGGCTACACATcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttattttttcagttaatacgaatgtgtgagttcttagagtgtataacttcgaattttattttcaatcacgtgtcgttatgaatcaataagggaaaat
gi|7 : ccctacGCATTTA-TGCAAGCTACACATCT-----TCGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGG-CA-------AGT--TGTGTCA--TATTTGATCATTGCTCGCCT---AGCAA-CG--AT-A---TT-TTGTCGCAAACCT-GCTTCAA-GCG-------TACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTT--------------------------T---TTCAGTTAATACGAATGTGT--GAGTTCTTAGAGTGTATA--ACTT--CGAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGG-AAActtggacgcatt
gi|8 : -TGCAAGCTACACATCT-----TCGTCGCATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGTGC-AAGTTGTT-CAT--A--------T-TT-GATCATTGCTCGCCT----GCAA-CTATAT-A---TTGTTGTCGCAAACCT-GCTTCAAAGCG-------TACC-ACTGCACGACGCCTGTCG-TTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTTTa
gi|12 : tggcatttaa--------TATT-GAACAATGTTCGCCT---AGCAA------G-GACATT-TTGTCGCATACCCCGCTTCAA-GCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCATACAGGTCTGTTTT---TTCTATTAATACAGAAGTtcagtttaatacgaatgtgtgagttcttagagt
gi|17 : ccttaCTTGTCT---AGCAA-T---AG-T---GT-TTGTCAAAAACCC-GCTTCAA-GCA-------TACTTACTGCACGCAGCCTGTCGGTTTCGTT
gi|4 : GTCT---AGTAA-CG--AC-A---TT-TTGTCACAAATCT-GCTTTTA-ACA-------TACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTGTT-TCTGAAAT----TACT--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTT--TGAATTT--CATTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATAA-GGA-AAAT-CAT-GTTGTATT-TATTTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTC-AATTTA-----TG-TTTTATT
gi|13 : CCTG-TTT---TT--GTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTT--TGAACTTTAT--TCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATAA-GGG---------------GAA-CATTTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACACttaggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|5 : -TTT---TTCAGTTAATACGAATGTGT--GAGTTCTTAGAGTGTATA--ACTT--CGAATTTTAT--TTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATAA-GGG-AAA
gi|11 : tccatatgcatttatgcaagctacacatcttcgtcgcattggtccaatcaagttgcgtaagatttactgtggcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttatAGTGGATACCACTTCTTGAATTTTAC-TTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGT-T-AAGTAAATCTATTGCTGTACATCTTTTA--CGCCACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT-----GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAAT-Tat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TAATTTAGATTTAATAAATCGTAAAAATCTAAAATTGAACACAGAAAAAAAGCTTTTTCATATTATACATTTACAAAGAATCAAAATTTTCGTTGATATACTTAAACAATTTCACACGTTATTAAATCGATAAAAAGAAACA
Unaligned ( gi|15 ): TGAATTTAAGATTTGATAAACGTAAAATTGTGAAAAACATACGTTATTTCATTCAAAATTTTATGAATCATTTAGGATTTAACAATGAGCACACGTCAGTGATTTCACGCGATGTTTA
Unaligned ( gi|16 ): ATGTGAATTGTAAGAGTTAATGTCGGTAAAATAATGAAATTGAACATTAAAAAATGCTATGTCATTCTACATTTTATAACA
Alignments
lowQualScore : 4444444444444 1111111 888888888888888888888 11111 2222222222222 222222222 6666666666666 1111 22222 1111111 11 222222222222222222222 111 3333 1111111 2222 11111 111 2 44444444 111 2 1
lowQualScore : 1 6 6 8888 1 0 66 2222222222222 55 66 3 3 5 5 0 3333333 555555555555555555555 77 5 2 2 7 3 66666 0000000000000 5 4 4 4 888888888 55 1 1 5 1111111111111 5 9999 888 1 1 777 11111 777 4 4 4 5 6666666 0 3 5 44 00 0 999999999999999999999 777 99 000 6 1 66 66 1111 5 5 0 8888888 5 5 0 7777 00000 444 0 1 0 5 1 9999 0 55555555 2 7 0 9 444 1 222 1 3 1 2 2
lowQualScore : . . . .... . . .. ............. .. .. . . . . . ....... ..................... .. . . . . . ..... ............. . . . . ......... .. . . . ............. . .... ... . . ... ..... ... . . . . ....... . . . .. .. . ..................... ... .. ... . . .. .. .... . . . ....... . . . .... ..... ... . . . . . .... . ........ . . . . ... . ... . . . . .
lowQualScore : 0 7 7 4444 4 1 99 5555555555555 00 99 1 4 7 7 1 1111111 444444444444444444444 00 7 5 3 5 2 77777 2222222222222 0 0 0 0 555555555 55 1 0 7 6666666666666 0 8888 888 0 0 888 33333 666 4 4 4 0 2222222 2 9 7 44 11 1 444444444444444444444 888 44 888 5 0 99 99 6666 0 7 1 6666666 7 7 1 2222 00000 000 8 0 4 6 4 2222 8 00000000 5 0 8 8 000 0 777 0 3 0 0 5
consensus : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAAT-AA-TCAAAATTTAAC--A----ATGA----C--------G-----GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GA-TGCAGGCTACACAT-CT-----TCGNCGC--ATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAA-GTTNCGTT--CAT-ATT--TG---ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG--CTT--TGTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Reference ( family-8119 ) : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATNCCAT--TCTGCATTTTATGAAT-AA-TCAAAATTTAAC--A----ATAAA---C--------A-----GTCACACCTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGNGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCATT-TGCATT-GA-TGCAGGCTACACAT-CT-----CGGCCGC--ATCGATCCGATCAAGTTGCGTAAGANTTGC-TGTGGC-A-GTTTCGTTTCCAT-A-T--TG---ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCATGACNACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG--CTT--AGTGCTTTTATTATATACNNCANGNNCAANATATCCAGCAATNAATCTAACATA
gi|1 : AAACATTGAAA-CGTAAAA------AAAT-GAACA--GAACAAA-----TT---A-ACTATGCCAA--TCTACACTTAATGAAA-AA-TCAAAATTTGAC--A----ATAAA---CTTCACTTAA-----GTCACAATTGAACGATTTCACGTGTT-ATTTAAACTCGCAGAAAAGAAATATGTGTC-----ACAACTTTA-GTACTCTGT-ATGTCCTCCGTT-TGCACT-GG-TGCAGGCTACACAT-AT-------GCCGTGTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGGA-A-----CATTT-----A-T--TG---AGCAATGCTTGCCT---AGCAA-C---AG-GTT-TTGTCA-CA-CAGCCGCTTC-AAGC-------ATACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATAT----GCCTG-TTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTTT--GAATTTTATATTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATA-TGGGAAACGCATGCTG-TAAACAT---TTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTCGT-CTTACAGTGCTTTTGTTA---ACTT-ATGTGTAAAATAT-CAGCATTGAAT-TAAAATA
gi|10 : AAACGCT-AAC-GGAAAAAATA-AGTGATTGAACA--GGAATAA---C-AT---ATGCCATTTCAT--TCTGCATTTTATAAAT-AA-TCAAAATTTAAC--A----ATGAAAATC--------ACGTTTGTCATCTTTGAGTGATTTCACACGTT-ATTTCAACTCGCTGGTAAGAAGAGTGTTTC-----ACGACTTTA-GTACTTCGT-TTGAACCCTGTT-TGCATT-GA-TGAAGGAAACACGTACT-----CGG-TGC--ATCAAa
gi|11 : GAGTGGATACCACTTCTTGAATTTTAC-TTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGTT-AAGTAAAT-C-TATTGCTGTACATCTTTTACGCC--ACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT---GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAATTTA
gi|12 : tAT-A-T--TG---AACAATGTTCGCCT---AGCAA-GG--AC-ATT-TTGTCG-CATACCCCGCTTC-AAGCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCATACAGGTCTGTTTT---TTCTATTAATACAGAAGTtaa
gi|13 : ccttCCTG-TTT---TT--GTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTTT--GAACTTTAT--TCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATA-AGGGGAA--------------CAT---TTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACAC
gi|14 : T-AAATCGTAAAAATC-TAAAATTGAACACAGAAAAAA---A--------GCTTTTTCATATTATACATTT-ACAAAG-AA-TCAAAATTT-TC--G----TTGA---------------------TATACTTAAACAATTTCACACGTT-A-TTAAA-TCGATAAAAAGAA
gi|15 : taatttagatttaaGAT-AAA-CGTAAAATTG-TGAAA---AACA---------------T---ACGTTATTTCAT--TCAAAATTTTATGAAT-CATTTAGGATTTAAC--A----ATGAG--------------------CACACGTCAGTGATTTCACGCGAT-GTTTAaca
gi|16 : tgaatttaagatttGTAAAATAA-TGAAATTGAACA--TTAAAAA---A-T------GCTATGTCAT--TCTACATTTTATAA
gi|17 : atgtgaattgtaagagttaatgtcgCTTGTCT---AGCAA-T---AG-TGT-TTGTCA-AA-AACCCGCTTC-AAGC-------ATACTTACTGCACGCAGCCTGTCGGTTTCGTTca
gi|18 : CCCTACT-TGCATT-GA-TGCAGGCTACACAT-CT-----TGGACGC--AT
gi|2 : TNGTTGATAAGAAG--TGTTTT-----ATAACTCTA-GTACTTCGT-ATGTCCCCCATT-TGCATT-GA-TGCAGGGTACACAT-CT-----TTGGCGC--ATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGGC-A-CGTTC--TTCCAT-A-TATTG---AGCNNNNNNNNNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTGT-CTCTAAAAT----GTCT--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTTC--G-ATTT----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATA-AGGG-AAT---TGTTG-TGTTCAT---TGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTCA--CAA--TGTGCT----TCAAATAAAGTATGCCCAACATAT-CAGCAATAAATCTAACATAt
gi|3 : T-AAA-CCTAAAATTC-TGAAATTGAACA--GAAAAAA---AATT---A---TATTTCAT--TCTACATTTTATGAAT-AT-TGAAAA---AAA--A----AAAAT---T--------G-----GTCACACCTGAGCGATT-CACGCGTT-TTTTGAACTCACTGATAAGAAGAGTAT----------AACTTT---------------TCCCCCATT-TACATT-GA-TGCTGGCTACATAT-CTGAGAACAGC-GC--AACGATCCGATCAAATTGCGTAAGAATTGC-TGTGGC-ACGTTCTG---CCAT-A-TATTC---AGCAGTGCTCGCCT---AGCAAAC---AACATT-TTGGCG-CT-AAACCATTTC-AAGC-------ATAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAAT----GCCCG-TTG---TTC--------------TGTGGGAGTCGTTAGAGTGGATG--ATGTT--GAATTT--TATTCTCAG-Cgaattta
gi|4 : attttacacaatGTCT---AGTAA-CG--AC-ATT-TTGTCA-CA-AATCTGCTTT-TAAC-------ATACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTGTT-TCTGAAAT----TACT--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTTT--GAATTT--CATTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATA-AGGAAAAT-CATGTTG-TATTTAT---TTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTCA--ATT--TATG-TTTTATTTTAt
gi|5 : CCATA-TGCATT-TA-TGCAAGCTACACAT-CT-----TCGTCGC--ATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAA-GTTGTGT---CAT-ATT--TG---ATCATTGCTCggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|5 : t-TTT---TTCAGTTAATACGAATGTGTGAG--TTCTTAGAGTGTATA--ACTTC--GAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATA-AGGGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttattttttcagttaatacgaatgtgtgagttcttagagtgtataacttcgaattttattttcaatcacgtgtcgttatgaatcaataagggaaaat
gi|6 : tccatatgcatttatgcaagctacacatcttcgtcgcattggtccaatcaagttgcgtaagatttactgtggcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttatAAAATTCAT--AATTGAACA--GAAAAAATTTA-TTGCTA-TCTATTTCAT--TCTCTATATGATGAATTAA-CCAAA-TTTAAT--ACAGGATAA---------------------CACACCCGAGCAA-TTCACATGTTAATTTAAAAT-GCTGATAAGACAAGTGTTTCCACAAACAACTTTAGGTACTTCATAATGTCCCCCCTTGTG-ATT-GATTGCCACTTACAC----------------------------ATCAATTTGCATGAGAA-TGCACGTGGCAA-GTTCTGT---CATAA-T--TATGCAACAGTGCTTGTCTTACAGTAA-C---AG---T-TTGTCACCA-AACat
gi|7 : GCATT-TA-TGCAAGCTACACAT-CT-----TCGTCGC--ATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAA-GTTGTGT---CAT-ATT--TG---ATCATTGCTCGCCT---AGCAA-CG--AT-ATT-TTGTCG-CA-AACCTGCTTC-AAGC-------GTACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTAC------TTAT--------------------TTT---TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGGAAA
gi|8 : GCATTTAA-TGCAAGCTACACAT-CT-----TCGTCGC--ATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGTGCA-A-GTT--GTT--CAT-ATT--TG---ATCATTGCTCGCCT----GCAA-CTATAT-ATTGTTGTCG-CA-AACCTGCTTCAAAGC-------GTACC-ACTGCACGACGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTT--TTC-----AGT---------------------TTAATACG--AATGTGTGAGTTCTTAGAGTa
gi|9 : tgGAT-AAC-CGTAAAATTC-TGAAATTGAGCA--GAAAAAA---A-TT---ATGCTATTTCAT--TCTGTATTCTATGAAT-AA-TCAAAATTTAACTGA----ATAA----C--------A--------ACA--TGAACAATTTCACGCGTT-ATTTAAACTGGTTGATAAGAGCAACATTTC-----ACAACTTT---------------TCCCCCATT-TGCACT-GA-TGCAGACTACACAT-GT-----TTGACTC--ATCGACCCAGTCAATTTG
Alignments
lowQualScore : 4444444444444 8888888888888888 11111 2222222222222 2222 1 22222 1111111 11 222222222222222222222 111 2222 1111111 2222 11111 111 2 22222222 1 1 1
lowQualScore : 1 6 6 8888 1 0 66 2222222222222 66 3 5 5 0 77 5 1 0000000000000000 55 5 2 2 1 3 66666 0000000000000 3 5 4 99999 1 1 1 88 6666 5 0 5 5 1 1 777 11111 777 4 4 4 5 6666666 0 3 5 44 00 0 999999999999999999999 777 99 000 6 1 66 66 8888 5 5 0 8888888 5 5 0 7777 00000 444 0 1 0 5 1 9999 0 11111111 2 7 0 9 1 2 3 3 1 2 1
lowQualScore : . . . .... . . .. ............. .. . . . . .. . . ................ .. . . . . . ..... ............. . . . ..... . . . .. .... . . . . . . ... ..... ... . . . . ....... . . . .. .. . ..................... ... .. ... . . .. .. .... . . . ....... . . . .... ..... ... . . . . . .... . ........ . . . . . . . . . . .
lowQualScore : 0 7 7 4444 4 1 99 5555555555555 99 4 7 7 1 99 7 7 6666666666666666 11 7 5 3 7 2 77777 2222222222222 1 0 0 22222 0 1 0 44 9999 0 0 0 0 0 0 888 33333 666 4 4 4 0 2222222 2 9 7 44 11 1 444444444444444444444 888 44 888 5 0 99 99 6666 0 7 1 6666666 7 7 1 2222 00000 000 8 4 4 6 4 2222 8 22222222 5 0 8 8 0 0 7 3 0 0 0
consensus : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTT-CGTTCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Reference ( family-8119 ) : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGNCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTNCGTTCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CTTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
gi|1 : AAACATTGAAA-CGTAAAA------AAAT-GAACA--GAACAAA-----TT---A-ACTATGCCAA--TCTACACTTAATGAA-AAA-TCAAAATTTGAC--A-ATAAACTTCACTTAA---GTCACAATTGAACGATTTCACGTGTT-ATTTAAACTCGCAGAAAAGAAATATGTGTC-----ACAACTTTA-GTACTCTGT-ATGTCCTCCGTT-TGCACT-GGTGCAGGCTACACATATG----CCGTGTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGG-AA----CATTTAT------TG-AGCAATGCTTGCCT---AGCAA-C---AG-GTT-TTGTCA-CA-CAGCCGCTTC-AAGC-------ATACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATAT----GCCTG-TTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTTT--GAATTTTATATTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATA-TGGGAAACGCATGCTG-TAAACAT---TTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTCG-TCTTACAGTGCTTTTGTTA---ACTT-ATGTGTAAAATAT-CAGCATTGAAT-TAAAATA
gi|10 : AAACGCT-AAC-GGAAAAAATA-AGTGATTGAACA--GGAATAA---C-AT---ATGCCATTTCAT--TCTGCATTTTATAAA-TAA-TCAAAATTTAAC--A-ATGAAAATCAC---GTTTGTCATCTTTGAGTGATTTCACACGTT-ATTTCAACTCGCTGGTAAGAAGAGTGTTTC-----ACGACTTTA-GTACTTCGT-TTGAACCCTGTT-TGCATT-GATGAAGGAAACACGTACT----CGGTGCATCAAa
gi|11 : GAGTGGATACCACTTCTTGAATTTTAC-TTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGTT-AAGTAAAT-C-TATTGCTGTACATCTTTTA--CGCCACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT---GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAATTTA
gi|12 : tTTAT-AT-T--G-AACAATGTTCGCCT---AGCAA-GG--AC-ATT-TTGTCG-CATACCCCGCTTC-AAGCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCATACAGGTCTGTTTT---TTCTATTAATACAGAAGTtaa
gi|13 : ccCCTG-TTT---TT--GTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTTT--GAACTTTAT--TCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATA-AGGGGAA--------------CAT---TTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACAC
gi|14 : T-AAATCGTAAAAATC-TAAAATTGAACACAGAAAAAA---A--------GCTTTTTCATATTATACATTT-ACAAA-GAA-TCAAAATTT-TC--G-TTGA----------------TATACTTAAACAATTTCACACGTT-A-TTAAA-TC---GATAAAAAGA
gi|15 : taatttagatttaaGAT-AAA-CGTAAAATTG-TGAAA---AACA---------------T---ACGTTATTTCAT--TCAAAATTTTATGAA-TCATTTAGGATTTAAC--A-ATGA----------G-----CACACGTCAGTGATTTCACGCGAT-GTTTAaaca
gi|16 : tgaatttaagatttGTAAAATAA-TGAAATTGAACA--TTAAAAA---A-T------GCTATGTCAT--TCTACATTTTATAA
gi|17 : atgtgaattgtaagagttaatgtcgCTTGTCT---AGCAA-T---AG-TGT-TTGTCA-AA-AACCCGCTTC-AAGC-------ATACTTACTGCACGCAGCCTGTCGGTTTCGTTca
gi|18 : CCCTACT-TGCATT-GATGCAGGCTACACATCTT----GGACGCAT
gi|2 : TNGTTGATAAGAAG--TGTTTT-----ATAACTCTA-GTACTTCGT-ATGTCCCCCATT-TGCATT-GATGCAGGGTACACATCTT----TGGCGCATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGGCACGTT-CTTCCAT-ATAT-TG-AGCNNNNNNNNNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTGT-CTCTAAAAT----GTCT--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTTC--G-ATTT----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATA-AGGG-AAT---TGTTG-TGTTCAT---TGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTCA-CAAT---GTGCT----TCAAATAAAGTATGCCCAACATAT-CAGCAATAAATCTAACATAt
gi|3 : T-AAA-CCTAAAATTC-TGAAATTGAACA--GAAAAAA---AATT---A---TATTTCAT--TCTACATTTTATGAA-TAT-TGAAAAAAAAAA--A-AT--------T---G---GTCACACCTGAGCGATT-CACGCGTT-TTTTGAACTCACTGATAAGAAGAGTAT----------AACTTT---------------TCCCCCATT-TACATT-GATGCTGGCTACATATCTGAGAACAGCGCAACGATCCGATCAAATTGCGTAAGAATTGC-TGTGGCACGTTCTGC-CAT-ATAT-TC-AGCAGTGCTCGCCT---AGCAAAC---AACATT-TTGGCG-CT-AAACCATTTC-AAGC-------ATAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAAT----GCCCG-TTG---TTC--------------TGTGGGAGTCGTTAGAGTGGATG--ATGTT--GAATTT--TATTCTCAG-Cgaattta
gi|4 : attttacacaatGTCT---AGTAA-CG--AC-ATT-TTGTCA-CA-AATCTGCTTT-TAAC-------ATACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTGTT-TCTGAAAT----TACT--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTTT--GAATTT--CATTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATA-AGGAAAAT-CATGTTG-TATTTAT---TTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTCA-ATTT---ATG-TTTTATTTTAt
gi|5 : CCATA-TGCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTTGTG-TCAT-AT-T-TG-ATCATTGCTCggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|5 : t-TTT---TTCAGTTAATACGAATGTGTGAG--TTCTTAGAGTGTATA--ACTTC--GAATTTTAT--TTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATA-AGGGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttattttttcagttaatacgaatgtgtgagttcttagagtgtataacttcgaattttattttcaatcacgtgtcgttatgaatcaataagggaaaat
gi|6 : tccatatgcatttatgcaagctacacatcttcgtcgcattggtccaatcaagttgcgtaagatttactgtggcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttatAAAATTCAT--AATTGAACA--GAAAAAATTTA-TTGCTA-TCTATTTCAT--TCTCTATATGATGAATTAA-CC-AAATTTAAT--ACAGGA------T---A---A-CACACCCGAGCAA-TTCACATGTTAATTTAAAAT-GCTGATAAGACAAGTGTTTCCACAAACAACTTTAGGTACTTCATAATGTCCCCCCTTGTG-ATT-GAT------TGC-CA-CTT------ACACATCAAT---------TTGCATGAGAA-TGCACGTGGCAAGTTCTG-TCATAAT-TATGCAACAGTGCTTGTCTTACAGTAA-C---AG---T-TTGTCACCA-AACat
gi|7 : GCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTTGTG-TCAT-AT-T-TG-ATCATTGCTCGCCT---AGCAA-CG--AT-ATT-TTGTCG-CA-AACCTGCTTC-AAGC-------GTACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTAC------TTAT--------------------TTT---TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGGAAA
gi|8 : GCATTTAATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGT-GCAAGTT--GTTCAT-AT-T-TG-ATCATTGCTCGCCT----GCAA-CTATAT-ATTGTTGTCG-CA-AACCTGCTTCAAAGC-------GTACC-ACTGCACGACGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTT--TTC-----AGT---------------------TTAATACG--AATGTGTGAGTTCTTAGAGTa
gi|9 : tgGAT-AAC-CGTAAAATTC-TGAAATTGAGCA--GAAAAAA---A-TT---ATGCTATTTCAT--TCTGTATTCTATGAA-TAA-TCAAAATTTAACTGA-ATAA------C---A------ACA--TGAACAATTTCACGCGTT-ATTTAAACTGGTTGATAAGAGCAACATTTC-----ACAACTTT---------------TCCCCCATT-TGCACT-GATGCAGACTACACATGTT----TGACTCATCGACCCAGTCAATTTG
Alignments
lowQualScore : 4444444444444 8888888888888888 11111 2222222222222 2222 1 22222 1111111 11 222222222222222222222 111 2222 1111111 2222 11111 111 2 111 111 1 1 1
lowQualScore : 1 6 6 8888 1 0 66 2222222222222 66 3 5 5 0 77 5 1 0000000000000000 55 5 2 2 1 3 66666 0000000000000 3 5 4 99999 2 1 1 88 2222 5 0 5 5 1 1 777 11111 777 4 4 4 5 6666666 0 3 5 44 00 0 999999999999999999999 777 99 000 6 1 66 66 8888 5 5 0 8888888 5 5 0 7777 00000 444 0 1 0 5 1 9999 0 000 777 2 7 0 9 1 2 3 3 1 2 1
lowQualScore : . . . .... . . .. ............. .. . . . . .. . . ................ .. . . . . . ..... ............. . . . ..... . . . .. .... . . . . . . ... ..... ... . . . . ....... . . . .. .. . ..................... ... .. ... . . .. .. .... . . . ....... . . . .... ..... ... . . . . . .... . ... ... . . . . . . . . . . .
lowQualScore : 0 7 7 4444 4 1 99 5555555555555 99 4 7 7 1 99 7 7 6666666666666666 11 7 5 3 7 2 77777 2222222222222 1 0 0 22222 3 1 0 44 3333 0 0 0 0 0 0 888 33333 666 4 4 4 0 2222222 2 9 7 44 11 1 444444444444444444444 888 44 888 5 0 99 99 6666 0 7 1 6666666 7 7 1 2222 00000 000 8 4 4 6 4 2222 8 555 555 5 0 8 8 0 0 7 3 0 0 0
consensus : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Reference ( family-8119 ) : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
gi|1 : AAACATTGAAA-CGTAAAA------AAAT-GAACA--GAACAAA-----TT---A-ACTATGCCAA--TCTACACTTAATGAA-AAA-TCAAAATTTGAC--A-ATAAACTTCACTTAA---GTCACAATTGAACGATTTCACGTGTT-ATTTAAACTCGCAGAAAAGAAATATGTGTC-----ACAACTTTA-GTACTCTGT-ATGTCCTCCGTT-TGCACT-GGTGCAGGCTACACATATG----CCGTGTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGG-AA---CAT-TTAT------TG-AGCAATGCTTGCCT---AGCAA-C---AG-GTT-TTGTCA-CA-CAGCCGCTTC-AAGC-------ATACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATAT----GCCTG-TTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTTT--GAATTTTATATTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATA-TGGGAAACGCATGCTG-TAAACAT---TTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTCG-TCTTACAGTGCTTTTGTTA---ACTT-ATGTGTAAAATAT-CAGCATTGAAT-TAAAATA
gi|10 : AAACGCT-AAC-GGAAAAAATA-AGTGATTGAACA--GGAATAA---C-AT---ATGCCATTTCAT--TCTGCATTTTATAAA-TAA-TCAAAATTTAAC--A-ATGAAAATCAC---GTTTGTCATCTTTGAGTGATTTCACACGTT-ATTTCAACTCGCTGGTAAGAAGAGTGTTTC-----ACGACTTTA-GTACTTCGT-TTGAACCCTGTT-TGCATT-GATGAAGGAAACACGTACT----CGGTGCATCAAa
gi|11 : GAGTGGATACCACTTCTTGAATTTTAC-TTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGTT-AAGTAAAT-C-TATTGCTGTACATCTTTTA--CGCCACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT---GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAATTTA
gi|12 : t-TTAT-AT-T--G-AACAATGTTCGCCT---AGCAA-GG--AC-ATT-TTGTCG-CATACCCCGCTTC-AAGCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCATACAGGTCTGTTTT---TTCTATTAATACAGAAGTtaa
gi|13 : ccCCTG-TTT---TT--GTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTTT--GAACTTTAT--TCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATA-AGGGGAA--------------CAT---TTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACAC
gi|14 : T-AAATCGTAAAAATC-TAAAATTGAACACAGAAAAAA---A--------GCTTTTTCATATTATACATTT-ACAAA-GAA-TCAAAATTT-TC--G-TTGA----------------TATACTTAAACAATTTCACACGTT-A-TTAAA-TC---GATAAAAAGA
gi|15 : taatttagatttaaGAT-AAA-CGTAAAATTG-TGAAA---AACA---------------T---ACGTTATTTCAT--TCAAAATTTTATGAA-TCATTTAGGATTTAAC--A-ATGA----------G-----CACACGTCAGTGATTTCACGCGAT-GTTTAaaca
gi|16 : tgaatttaagatttGTAAAATAA-TGAAATTGAACA--TTAAAAA---A-T------GCTATGTCAT--TCTACATTTTATAA
gi|17 : atgtgaattgtaagagttaatgtcgCTTGTCT---AGCAA-T---AG-TGT-TTGTCA-AA-AACCCGCTTC-AAGC-------ATACTTACTGCACGCAGCCTGTCGGTTTCGTTca
gi|18 : CCCTACT-TGCATT-GATGCAGGCTACACATCTT----GGACGCAT
gi|2 : TNGTTGATAAGAAG--TGTTTT-----ATAACTCTA-GTACTTCGT-ATGTCCCCCATT-TGCATT-GATGCAGGGTACACATCTT----TGGCGCATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGGCACGTTCTT-CCAT-ATAT-TG-AGCNNNNNNNNNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTGT-CTCTAAAAT----GTCT--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTTC--G-ATTT----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATA-AGGG-AAT---TGTTG-TGTTCAT---TGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTCA-CAAT---GTGCT----TCAAATAAAGTATGCCCAACATAT-CAGCAATAAATCTAACATAt
gi|3 : T-AAA-CCTAAAATTC-TGAAATTGAACA--GAAAAAA---AATT---A---TATTTCAT--TCTACATTTTATGAA-TAT-TGAAAAAAAAAA--A-AT--------T---G---GTCACACCTGAGCGATT-CACGCGTT-TTTTGAACTCACTGATAAGAAGAGTAT----------AACTTT---------------TCCCCCATT-TACATT-GATGCTGGCTACATATCTGAGAACAGCGCAACGATCCGATCAAATTGCGTAAGAATTGC-TGTGGCACGTTCTG-CCAT-ATAT-TC-AGCAGTGCTCGCCT---AGCAAAC---AACATT-TTGGCG-CT-AAACCATTTC-AAGC-------ATAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAAT----GCCCG-TTG---TTC--------------TGTGGGAGTCGTTAGAGTGGATG--ATGTT--GAATTT--TATTCTCAG-Cgaattta
gi|4 : attttacacaatGTCT---AGTAA-CG--AC-ATT-TTGTCA-CA-AATCTGCTTT-TAAC-------ATACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTGTT-TCTGAAAT----TACT--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTTT--GAATTT--CATTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATA-AGGAAAAT-CATGTTG-TATTTAT---TTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTCA-ATTT---ATG-TTTTATTTTAt
gi|5 : CCATA-TGCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTCggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|5 : t-TTT---TTCAGTTAATACGAATGTGTGAG--TTCTTAGAGTGTATA--ACTTC--GAATTTTAT--TTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATA-AGGGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttattttttcagttaatacgaatgtgtgagttcttagagtgtataacttcgaattttattttcaatcacgtgtcgttatgaatcaataagggaaaat
gi|6 : tccatatgcatttatgcaagctacacatcttcgtcgcattggtccaatcaagttgcgtaagatttactgtggcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttatAAAATTCAT--AATTGAACA--GAAAAAATTTA-TTGCTA-TCTATTTCAT--TCTCTATATGATGAATTAA-CC-AAATTTAAT--ACAGGA------T---A---A-CACACCCGAGCAA-TTCACATGTTAATTTAAAAT-GCTGATAAGACAAGTGTTTCCACAAACAACTTTAGGTACTTCATAATGTCCCCCCTTGTG-ATT-GAT------TGC-CA-CTT------ACACATCAAT---------TTGCATGAGAA-TGCACGTGGCAAGTTCTG-TCATAAT-TATGCAACAGTGCTTGTCTTACAGTAA-C---AG---T-TTGTCACCA-AACat
gi|7 : GCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTCGCCT---AGCAA-CG--AT-ATT-TTGTCG-CA-AACCTGCTTC-AAGC-------GTACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTAC------TTAT--------------------TTT---TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGGAAA
gi|8 : GCATTTAATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGT-GCAAGTT-GT-TCAT-AT-T-TG-ATCATTGCTCGCCT----GCAA-CTATAT-ATTGTTGTCG-CA-AACCTGCTTCAAAGC-------GTACC-ACTGCACGACGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTT--TTC-----AGT---------------------TTAATACG--AATGTGTGAGTTCTTAGAGTa
gi|9 : tgGAT-AAC-CGTAAAATTC-TGAAATTGAGCA--GAAAAAA---A-TT---ATGCTATTTCAT--TCTGTATTCTATGAA-TAA-TCAAAATTTAACTGA-ATAA------C---A------ACA--TGAACAATTTCACGCGTT-ATTTAAACTGGTTGATAAGAGCAACATTTC-----ACAACTTT---------------TCCCCCATT-TGCACT-GATGCAGACTACACATGTT----TGACTCATCGACCCAGTCAATTTG
Alignments
lowQualScore : 4444444444444 8888888888888888 11111 2222222222222 2222 1 22222 1111111 11 222222222222222222222 111 2222 1111111 2222 11111 111 2 111 111 1 1 1
lowQualScore : 1 6 6 8888 1 0 66 2222222222222 66 3 5 5 0 77 5 1 0000000000000000 55 5 2 2 1 3 66666 0000000000000 3 5 4 99999 2 1 1 88 2222 5 0 5 5 1 1 777 11111 777 4 4 4 5 6666666 0 3 5 44 00 0 999999999999999999999 777 99 000 6 1 66 66 8888 5 5 0 8888888 5 5 0 7777 00000 444 0 1 0 5 1 9999 0 000 777 2 7 0 9 1 2 3 3 1 2 1
lowQualScore : . . . .... . . .. ............. .. . . . . .. . . ................ .. . . . . . ..... ............. . . . ..... . . . .. .... . . . . . . ... ..... ... . . . . ....... . . . .. .. . ..................... ... .. ... . . .. .. .... . . . ....... . . . .... ..... ... . . . . . .... . ... ... . . . . . . . . . . .
lowQualScore : 0 7 7 4444 4 1 99 5555555555555 99 4 7 7 1 99 7 7 6666666666666666 11 7 5 3 7 2 77777 2222222222222 1 0 0 22222 3 1 0 44 3333 0 0 0 0 0 0 888 33333 666 4 4 4 0 2222222 2 9 7 44 11 1 444444444444444444444 888 44 888 5 0 99 99 6666 0 7 1 6666666 7 7 1 2222 00000 000 8 4 4 6 4 2222 8 555 555 5 0 8 8 0 0 7 3 0 0 0
consensus : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Reference ( family-8119 ) : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
gi|1 : AAACATTGAAA-CGTAAAA------AAAT-GAACA--GAACAAA-----TT---A-ACTATGCCAA--TCTACACTTAATGAA-AAA-TCAAAATTTGAC--A-ATAAACTTCACTTAA---GTCACAATTGAACGATTTCACGTGTT-ATTTAAACTCGCAGAAAAGAAATATGTGTC-----ACAACTTTA-GTACTCTGT-ATGTCCTCCGTT-TGCACT-GGTGCAGGCTACACATATG----CCGTGTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGG-AA---CAT-TTAT------TG-AGCAATGCTTGCCT---AGCAA-C---AG-GTT-TTGTCA-CA-CAGCCGCTTC-AAGC-------ATACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATAT----GCCTG-TTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTTT--GAATTTTATATTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATA-TGGGAAACGCATGCTG-TAAACAT---TTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTCG-TCTTACAGTGCTTTTGTTA---ACTT-ATGTGTAAAATAT-CAGCATTGAAT-TAAAATA
gi|10 : AAACGCT-AAC-GGAAAAAATA-AGTGATTGAACA--GGAATAA---C-AT---ATGCCATTTCAT--TCTGCATTTTATAAA-TAA-TCAAAATTTAAC--A-ATGAAAATCAC---GTTTGTCATCTTTGAGTGATTTCACACGTT-ATTTCAACTCGCTGGTAAGAAGAGTGTTTC-----ACGACTTTA-GTACTTCGT-TTGAACCCTGTT-TGCATT-GATGAAGGAAACACGTACT----CGGTGCATCAAa
gi|11 : GAGTGGATACCACTTCTTGAATTTTAC-TTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGTT-AAGTAAAT-C-TATTGCTGTACATCTTTTA--CGCCACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT---GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAATTTA
gi|12 : t-TTAT-AT-T--G-AACAATGTTCGCCT---AGCAA-GG--AC-ATT-TTGTCG-CATACCCCGCTTC-AAGCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCATACAGGTCTGTTTT---TTCTATTAATACAGAAGTtaa
gi|13 : ccCCTG-TTT---TT--GTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTTT--GAACTTTAT--TCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATA-AGGGGAA--------------CAT---TTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACAC
gi|14 : T-AAATCGTAAAAATC-TAAAATTGAACACAGAAAAAA---A--------GCTTTTTCATATTATACATTT-ACAAA-GAA-TCAAAATTT-TC--G-TTGA----------------TATACTTAAACAATTTCACACGTT-A-TTAAA-TC---GATAAAAAGA
gi|15 : taatttagatttaaGAT-AAA-CGTAAAATTG-TGAAA---AACA---------------T---ACGTTATTTCAT--TCAAAATTTTATGAA-TCATTTAGGATTTAAC--A-ATGA----------G-----CACACGTCAGTGATTTCACGCGAT-GTTTAaaca
gi|16 : tgaatttaagatttGTAAAATAA-TGAAATTGAACA--TTAAAAA---A-T------GCTATGTCAT--TCTACATTTTATAA
gi|17 : atgtgaattgtaagagttaatgtcgCTTGTCT---AGCAA-T---AG-TGT-TTGTCA-AA-AACCCGCTTC-AAGC-------ATACTTACTGCACGCAGCCTGTCGGTTTCGTTca
gi|18 : CCCTACT-TGCATT-GATGCAGGCTACACATCTT----GGACGCAT
gi|2 : TNGTTGATAAGAAG--TGTTTT-----ATAACTCTA-GTACTTCGT-ATGTCCCCCATT-TGCATT-GATGCAGGGTACACATCTT----TGGCGCATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGGCACGTTCTT-CCAT-ATAT-TG-AGCNNNNNNNNNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTGT-CTCTAAAAT----GTCT--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTTC--G-ATTT----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATA-AGGG-AAT---TGTTG-TGTTCAT---TGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTCA-CAAT---GTGCT----TCAAATAAAGTATGCCCAACATAT-CAGCAATAAATCTAACATAt
gi|3 : T-AAA-CCTAAAATTC-TGAAATTGAACA--GAAAAAA---AATT---A---TATTTCAT--TCTACATTTTATGAA-TAT-TGAAAAAAAAAA--A-AT--------T---G---GTCACACCTGAGCGATT-CACGCGTT-TTTTGAACTCACTGATAAGAAGAGTAT----------AACTTT---------------TCCCCCATT-TACATT-GATGCTGGCTACATATCTGAGAACAGCGCAACGATCCGATCAAATTGCGTAAGAATTGC-TGTGGCACGTTCTG-CCAT-ATAT-TC-AGCAGTGCTCGCCT---AGCAAAC---AACATT-TTGGCG-CT-AAACCATTTC-AAGC-------ATAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAAT----GCCCG-TTG---TTC--------------TGTGGGAGTCGTTAGAGTGGATG--ATGTT--GAATTT--TATTCTCAG-Cgaattta
gi|4 : attttacacaatGTCT---AGTAA-CG--AC-ATT-TTGTCA-CA-AATCTGCTTT-TAAC-------ATACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTGTT-TCTGAAAT----TACT--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTTT--GAATTT--CATTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATA-AGGAAAAT-CATGTTG-TATTTAT---TTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTCA-ATTT---ATG-TTTTATTTTAt
gi|5 : CCATA-TGCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTCggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|5 : t-TTT---TTCAGTTAATACGAATGTGTGAG--TTCTTAGAGTGTATA--ACTTC--GAATTTTAT--TTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATA-AGGGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttattttttcagttaatacgaatgtgtgagttcttagagtgtataacttcgaattttattttcaatcacgtgtcgttatgaatcaataagggaaaat
gi|6 : tccatatgcatttatgcaagctacacatcttcgtcgcattggtccaatcaagttgcgtaagatttactgtggcaagttgtgtcatatttgatcattgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacttatAAAATTCAT--AATTGAACA--GAAAAAATTTA-TTGCTA-TCTATTTCAT--TCTCTATATGATGAATTAA-CC-AAATTTAAT--ACAGGA------T---A---A-CACACCCGAGCAA-TTCACATGTTAATTTAAAAT-GCTGATAAGACAAGTGTTTCCACAAACAACTTTAGGTACTTCATAATGTCCCCCCTTGTG-ATT-GAT------TGC-CA-CTT------ACACATCAAT---------TTGCATGAGAA-TGCACGTGGCAAGTTCTG-TCATAAT-TATGCAACAGTGCTTGTCTTACAGTAA-C---AG---T-TTGTCACCA-AACat
gi|7 : GCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTCGCCT---AGCAA-CG--AT-ATT-TTGTCG-CA-AACCTGCTTC-AAGC-------GTACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTAC------TTAT--------------------TTT---TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TATTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGGAAA
gi|8 : GCATTTAATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGT-GCAAGTT-GT-TCAT-AT-T-TG-ATCATTGCTCGCCT----GCAA-CTATAT-ATTGTTGTCG-CA-AACCTGCTTCAAAGC-------GTACC-ACTGCACGACGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTT--TTC-----AGT---------------------TTAATACG--AATGTGTGAGTTCTTAGAGTa
gi|9 : tgGAT-AAC-CGTAAAATTC-TGAAATTGAGCA--GAAAAAA---A-TT---ATGCTATTTCAT--TCTGTATTCTATGAA-TAA-TCAAAATTTAACTGA-ATAA------C---A------ACA--TGAACAATTTCACGCGTT-ATTTAAACTGGTTGATAAGAGCAACATTTC-----ACAACTTT---------------TCCCCCATT-TGCACT-GATGCAGACTACACATGTT----TGACTCATCGACCCAGTCAATTTG
blockSeqs : C . T TTCA G CA TTTATTGCTAT AT T T T TG C G AAATCACGTTTGT TT A C C A T CACAA AGGTACTTCATAA G G T AGAAC G G A AC CTT A A A C A A TAC CTAT ACA G C T A AGCACAC G T GT AG TCTCTGGCATACAGGTCTGT ATA TA AGA A G CC TT TAC A T CTATATG A T TCA CTGTA CTT A T G C CGGC GCC . C C T C C A C T T C
blockSeqs : A . . ATA A . CATATG . T . . . . G TGGT CT . C C A T . AGTACTTCGTT A . . C A G A A CTG . A . . G N . GG CA . . . . . G . TG AA TCTCTGAAATGCCCG . TC AGA A G . . TAT . . . . . TC TGTT . A T T C GG CA . C T A A T C . A C
blockSeqs : A . . ATC G . ATTATG . T . . . . G TAA CG . A N A T . AGTACTTCGTA A . . G G A T T GTG . . . . G G . AC GT . . . . . N . TT AG TCTCTAAAATGTCT . TA AAA T T . . TAT . . . . . T TATT . T . T T AG AT . . . T
blockSeqs : . . TTG G . AATTA . T . . . . G CA CC . C C A T . . A . . T G A A T CTG . . . . T T . CG NN . . . . . G . TA TT TTTCTGAAATTACT . AG AGC A G . . TA . . . . . . . . T . . A G
blockSeqs : . . TAA G . TACG . G . . . . A G CC . . G A . . . A . . C T A T T GTG . . . . A G . CG CA . . . . . G . TA . TTCAGT . AG GAA A C . . CA . . . . .
blockSeqs : TTC G . ATG . T . . . . . . . . . . C . . C A A T T GT . . . . T T . T TA . . . . . . . . . T . G G . T . . TA . . . . .
blockSeqs : TTC . . AG . . A . . C T . . . . . T T . N TA . . . . . . . . G . T . . . .
blockSeqs : . T T . C G . . . . . .
blockSeqs : . . A
blockSeqCons : TTN* ATTACG******* GT************** AGTACTTCGT*** C**** TCTCTGAAATGCT******** TA** T***
originalCons : AAACGNT-AAA-CGTAAAATTC-TGAAATTGAACA--GAAAAAA---A-TT---A-GCTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGA------C---G---GTCACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCGT-ATGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTTCTCTGAAAT----GCCTG-TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTATATTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT-CATGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
finalCons : AAACGNT-AAA-CGTAAAATTN-TGAAATTGAACA--GAAAAAAATTACG-------CTATTTCAT--TCTACATTTTATGAA-TAA-TCAAAATTTAAC--A-ATGAGT--------------CACACTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTAGTACTTCGT---TGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTCGCCT---AGCAAC----AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTGTCTCTGAAATGCT--------TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTTTA--TTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT---TGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Alignments
lowQualScore : 333333333333 11111 6666666666666 11111 33333333333333 2222 1 11111 1111111 11 55555555555555555555555555555555 222 1111111 3333 11111 111 2 111 111 1 1 1
lowQualScore : 1 6 6 8888 1 0 66 777777777777 66 5 5 0 22222 5555555555555 5 2 5 2 2 1 3 66666 99999999999999 3 5 4 99999 2 1 1 88 2222 5 0 5 5 1 1 4 777 99999 777 4 4 4 4 4444444 0 3 5 22 11 44444444444444444444444444444444 000 2 0 1 66 66 66 5 5 5 0 8888888 5 5 0 6666 00000 444 0 1 0 5 1 9999 0 000 777 2 7 0 9 1 2 3 3 1 2 1
lowQualScore : . . . .... . . .. ............ .. . . . ..... ............. . . . . . . . ..... .............. . . . ..... . . . .. .... . . . . . . . ... ..... ... . . . . ....... . . . .. .. ................................ ... . . . .. .. .. . . . . ....... . . . .... ..... ... . . . . . .... . ... ... . . . . . . . . . . .
lowQualScore : 0 7 7 6666 4 1 99 111111111111 99 7 7 1 33333 7777777777777 7 4 7 5 3 7 2 77777 33333333333333 1 0 0 22222 3 1 0 44 3333 0 0 0 0 0 0 0 000 33333 000 0 0 0 4 4444444 3 6 0 99 11 22222222222222222222222222222222 000 6 4 0 99 99 99 0 0 7 1 6666666 7 7 1 8888 00000 000 8 4 4 6 4 2222 8 555 555 5 0 8 8 0 0 7 3 0 0 0
consensus : AAACGNT-AAA-CGTAAAATTC-TGAAATTGA--ACAGAAAAAA---A-TTACG--CTATTTC--ATTCTACATTTTATGAA-TAA-TCAAAATTTAACA----ATGA-----------GTCACA-CNTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCG-TA-TGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTC-GCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTG-TCTCTGAAA-TG-C-------T--TTT---TTCTGTTAATACGGAAGTGTGNGAGTCCTTAGAGTGNATA--ACTTC--GAATTT--TA-TTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAATC--TGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
Reference ( family-8119 ) : AAACGNT-AAA-CGTAAAATTN-TGAAATTGA--ACAGAAAAAA---A-TTACG--CTATTTC--ATTCTACATTTTATGAA-TAA-TCAAAATTTAACA----ATGA-----------GTCACA-CTTGAGCGATTTCACGCGTT-ATTTAAACTCGCTGATAAGAAGAGTGTTTC-----ACAACTTTA-GTACTTCG-T--TGTCCCCCGTT-TGCATT-GATGCAGGCTACACATCTT----CGGCGCATCGATCCGATCAAGTTGCGTAAGANTTGC-CGTGGCAAGTTCGT-TCAT-AT-T-TG-ANCANTGCTC-GCCT---AGCAA-C---AN-ATT-TTGTCG-CA-AACCCGCTTC-AAGC-------GTACCTACTGCACGCAGCCTGTCGGTTTCGTTTAGCCGCGGCATGA-CTNCTACANATTTTTG-TCTCTGAAA-TG-C-------T--TTT---TTCTGTTAATACGGAAGTGTGAGAGTCCTTAGAGTGNATA--ACTTC--GAATTT--TA-TTCTCAA-CCAC-GTGTCGCTATG-------AG-TCAATA-AGGGAAAT---TGTTG-TGTNCAT---TTAAGCGTGACTACTAGTGAGTATTTAACCACT-GG-ACCATGCGAACACTCG-CCTT---GTGCTTTTATTATATACNTCATGCGTAAAATAT-CAGCAATNAATCTAANATA
gi|1 : AAACATTGAAA-CGTAAAA------AAAT-GA--ACAGAACAAA-----TTA-A--CTATGCC--AATCTACACTTAATGAA-AAA-TCAAAATTTGACA----ATAAACTTCACTTAAGTCACA-ATTGAACGATTTCACGTGTT-ATTTAAACTCGCAGAAAAGAAATATGTGTC-----ACAACTTTA-GTACTCTG-TA-TGTCCTCCGTT-TGCACT-GGTGCAGGCTACACATATG----CCGTGTATCGATCCGATCAGGTTATGTAAGAATTGC-CGTGG-AA---CAT-TTAT------TG-AGCAATGCTT-GCCT---AGCAA-C---AG-GTT-TTGTCA-CA-CAGCCGCTTC-AAGC-------ATACCTACTGCCCGCAGCCTGTCGGTTTCATTTATCCGTGGCATGA-CTTCTACATATTTTTGTTCTCCGATA-TG-C-------CTGTTT---TTCTGTTATTACAGAAGTATAAGAGTCCTTGAAGTGGATA--ATTTT--GAATTTTATA-TTTTCAA-CCAC-GTGTCGCCATG-------AG-TCAATA-TGGGAAACGCATGCTG-TAAACAT---TTAAGTGTGACTAC-AGTGAGTATTTAATCATT-GG-ACCACGCGAACACTCG-TCTTACAGTGCTTTTGTTA---ACTT-ATGTGTAAAATAT-CAGCATTGAAT-TAAAATA
gi|10 : AAACGCT-AAC-GGAAAAAATA-AGTGATTGA--ACAGGAATAA---C-ATATG--CCATTTC--ATTCTGCATTTTATAAA-TAA-TCAAAATTTAACA----ATGAAAATCACGTTTGTCATC-TTTGAGTGATTTCACACGTT-ATTTCAACTCGCTGGTAAGAAGAGTGTTTC-----ACGACTTTA-GTACTTCGTT--TGAACCCTGTT-TGCATT-GATGAAGGAAACACGTACT----CGGTGCATCAAa
gi|11 : GAGTGGATACCACTTCTTGAATTT--TACTTCTCAAACCACTGTGTCACTATGCTATATGAG-TCAGTT-AAGTAAATC--TATTGCTGTACATCTTTTA--CGCCACAACTAGGGAGTATTTTACCACTCGGCACCATGCGAACACTCGGCCTT---GTGCTCTTATTATATACCTCAAGAGTAAAATATCCAGCAATTAATTTA
gi|12 : t-TTAT-AT-T--G-AACAATGTTC-GCCT---AGCAA-GG--AC-ATT-TTGTCG-CATACCCCGCTTC-AAGCAGCACACGTACTTACTGTACGTAGTCTGTCGGTATCGTTTGGCTGCGACATGA-CGTCTTCAGATTTTCG-TCTCTGGCA-TA-CAGGTCTGT--TTT---TTCTATTAATACAGAAGTtaa
gi|13 : ccT---TTTTGTTAATACAGAAGTGTAAG--TCATAAAAGTGGATA--AGTTT--GAACTT--TA-TTCTCAA-TCAC-GTGTTGCTATT-------AG-TCAATA-AGGGGAA--------------CAT---TTAAACATGACAGCTAG-GGGTATTTAACCACT-GG-ACCATGCAAACAC
gi|14 : cctgT-AAATCGTAAAAATC-TAAAATTGAACACAGAAAAAA---A-----G--CTTTTTCATATTATACA-TTTACAAA-GAA-TCAAAATTT-TCG----TTGA-------------TATA-CTTAAACAATTTCACACGTT-A-TTAAA-TC---GATAAAAAGA
gi|15 : taatttagatttaaGAT-AAA-CGTAAAATTG-TGAAA---A--ACA-------------TACG--TTATTTC--ATTCAAAATTTTATGAA-TCATTTAGGATTTAACA----ATGA-----------G-CACA-CGTCAGTGATTTCACGCGAT-GTTTAaaca
gi|16 : tgaatttaagatttGTAAAATAA-TGAAATTGA--ACATTAAAAA---A-T---G--CTATGTC--ATTCTACATTTTATAA
gi|17 : atgtgaattgtaagagttaatgtcgCTT-GTCT---AGCAA-T---AG-TGT-TTGTCA-AA-AACCCGCTTC-AAGC-------ATACTTACTGCACGCAGCCTGTCGGTTTCGTTca
gi|18 : CCCTACT-TGCATT-GATGCAGGCTACACATCTT----GGACGCAT
gi|2 : TNGTTGATAAGAAG--TGTTTT-----ATAACTCTA-GTACTTCG-TA-TGTCCCCCATT-TGCATT-GATGCAGGGTACACATCTT----TGGCGCATCGACCAGGTCAAGTTGAGTAAGAATTGC-ATTGGCACGTTCTT-CCAT-ATAT-TG-AGCNNNNNNN-NNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTACAAATGCTTG-TCTCTAAAA-TGTC-------T--TTT---TTCTCTTAATACAAAAATGCGAGAGTCCCTAGAATGTATA--ACTTC--G-ATTT-----TTTTTAA-CCAG-GTGTCGTTATG-------AGACCAATA-AGGG-AAT---TGTTG-TGTTCAT---TGTAGCATGACTAC-ACTAAGTATTTAACAATT-G---TC-TGCGAACACTCA-CAAT---GTGCT----TCAAATAAAGTATGCCCAACATAT-CAGCAATAAATCTAACATAt
gi|3 : T-AAA-CCTAAAATTC-TGAAATTGA--ACAGAAAAAA---AATTA-----TATTTC--ATTCTACATTTTATGAA-TAT-TGAAAAAAAAAAA----ATTG-----------GTCACA-CCTGAGCGATT-CACGCGTT-TTTTGAACTCACTGATAAGAAGAGTAT----------AACTTT----------------TCCCCCATT-TACATT-GATGCTGGCTACATATCTGAGAACAGCGCAACGATCCGATCAAATTGCGTAAGAATTGC-TGTGGCACGTTCTG-CCAT-ATAT-TC-AGCAGTGCTC-GCCT---AGCAAAC---AACATT-TTGGCG-CT-AAACCATTTC-AAGC-------ATAACTACTGCACGCGGTCTGTCGGTTTCGTTTAGCCGCGACATGA-CTTGTACAGATTTTTG-TCTCTGAAA-TG-C-------C--CGT------TGTT----C-----TGTGGGAGTCGTTAGAGTGGATG--ATGTT--GAATTT--TA-TTCTCAG-Cgaattta
gi|4 : attttacacaat-GTCT---AGTAA-CG--AC-ATT-TTGTCA-CA-AATCTGCTTT-TAAC-------ATACCTACTTCACACAGCCTGTTGGTTTTGTGTAGCCGCGGCATGA-C----------CTTTG-TTTCTGAAATTA-C-------T--TTTATATTCTATTAATACAGCAGTGTGATTTTCCTTAGAGTGCACA--ACTTT--GAATTT--CA-TTCTCAA-CCAC-GTTTCGC--TG-------AG-TTAATA-AGGAAAATCA-TGTTG-TATTTAT---TTAAGCATGACTTC-AATAAGTATTTAGCCAAT-AG-ACCATGCGAACACTCA-ATTT---ATG-TTTTATTTTAt
gi|5 : CCATA-TGCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTCNNNNN---NNNNN-N---NN-NNN-NNNNNN-NN-NNNNNNNNNN-NNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NTACTACTTATTTT---------------------------------TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TA-TTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATA-AGGGAAAggaccctttatacactacttgaaaatgtaggcactaagaaatgat
gi|6 : tAAAATTCAT--AATTGA--ACAGAAAAAATTTA-TTGCTATCTATTTC--ATTCTCTATATGATGAATTAA-CC-AAATTTAATACAGGATAA-------------CACA-CCCGAGCAA-TTCACATGTTAATTTAAAAT-GCTGATAAGACAAGTGTTTCCACAAACAACTTTAGGTACTTCA-TAATGTCCCCCCTTGTG-ATT-GAT------TGC-CA-CTT------ACACATCAAT---------TTGCATGAGAA-TGCACGTGGCAAGTTCTG-TCATAAT-TATGCAACAGTGCTT-GTCTTACAGTAA-C---AG---T-TTGTCACCA-AACat
gi|7 : GCATT-TATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCGTAAGATTTAC-TGTGGCAAGTT-GTGTCAT-AT-T-TG-ATCATTGCTC-GCCT---AGCAA-CG--AT-ATT-TTGTCG-CA-AACCTGCTTC-AAGC-------GTACCCACTGCACGCAGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTAC------TTA----------------------T--TTT---TTCAGTTAATACG--AATGTGTGAGTTCTTAGAGTGTATA--ACTTC--GAATTT--TA-TTTTCAA-TCAC-GTGTCGTTATG-------AA-TCAATATAGGGAAA
gi|8 : GCATTTAATGCAAGCTACACATCTT----CGTCGCATTGGTCCAATCAAGTTGCG-AAGATTTAC-TGT-GCAAGTT-GT-TCAT-AT-T-TG-ATCATTGCTC-GCCT----GCAA-CTATAT-ATTGTTGTCG-CA-AACCTGCTTCAAAGC-------GTACC-ACTGCACGACGCCTGTC-GTTTCGTTTAGCCGCGGCATGA-CTACTACTTATTTTT--TC-----AG-T------------------------TTAATACG--AATGTGTGAGTTCTTAGAGTa
gi|9 : tgGAT-AAC-CGTAAAATTC-TGAAATTGA--GCAGAAAAAA---A-TTATG--CTATTTC--ATTCTGTATTCTATGAA-TAA-TCAAAATTTAAC------TGA-----------ATAACAACATGAACAATTTCACGCGTT-ATTTAAACTGGTTGATAAGAGCAACATTTC-----ACAACTTT----------------TCCCCCATT-TGCACT-GATGCAGACTACACATGTT----TGACTCATCGACCCAGTCAATTTG