lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111 4444444444444444444444444444444444444444444444444444444444444444 2222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111 11111111
lowQualScore : 99999999999999999999 11 1 1 11 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 1 6666666666666 11 3333333333333333333333333333333333333333333333333333333333333333 1111 111 2222222222 1 11 66666666666666666666666666666666666666666666666 1 2222222 11111 22222 1 1 333333333333333 11111 333333333333 1 11111 0000000000000000000000000000000000000000000000000000000000000000000 1 1 11 1 4 666666 22222222 77777 1 444444 11 3333 1111 22 1 5555555555555 1 1 1 5555555555555555555555555555555555555555555555555555555555555 1111 1111111 1111111111 3333 11111 55555555555555555555555555555 1 11 1111 1 44444444444444444444444444444 3333333 11 1111 111 1111111111 11111111 1111 4444444444444444 11111111 1 1 111 11 9999999999999999999 1 11111 33333333333 22222 111 8888888888888888888888888888888888888888888888888888888888888 11 111 11 33333333333 1 1 111 1 11 222222 7777777777777777777777777 333 999999999 33333 1 333333 2 33333333 1 444444 2 9999999999999 11 22
lowQualScore : 4 3 6 6 11111111111111111111 22 4 6 2 6 5 8 11 8 66 5 0 8 6 6 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999 3 5 5 2 0 3 3333333333333 77 6 2 3 2222222222222222222222222222222222222222222222222222222222222222 0 1 6666 111 6 4444444444 0 6 1 99 3 6 6 99 99 6 3 6 88 77777777777777777777777777777777777777777777777 2 1 5555555 66666 00000 5 6 6 7 1 3 000000000000000 66666 888888888888 3 2 66666 7 4444444444444444444444444444444444444444444444444444444444444444444 8 3 6 7 4 5 6 99 6 4 7 6 0 666666 4 11111111 11111 8 6 0 222222 22 4444 0000 11 1 7777777777777 99 3 2 6 0 55 1 0000000000000000000000000000000000000000000000000000000000000 33 3 0000 2 2 777 6 3 1111111 3 8 666 99 1111111111 1111 1 55555 6 3 00000000000000000000000000000 5 7 00 2 6 6666 3 3 1 44 11111111111111111111111111111 7777 2222222 00 1 0000 777 5 5555555555 1 1 11 33333333 6 7777 5 1 1 2222222222222222 99999999 1 5 2 0 99 000 0 3 55 7777777777777777777 3 66666 7 77777777777 3 44444 111 999 0000000000000000000000000000000000000000000000000000000000000 1 7 6 88 6 8 9 666 5 11 8 66 0 22222222222 1 5 6 1 8 555 8 88 6 1 6 66 6 88 6 111111 3 7777777777777777777777777 33 2 4 888 6 444444444 4 6 11111 6 5 888888 8 77777777 7 222222 0 6 8888888888888 55 6 77 6
lowQualScore : . . . . .................... .. . . . . . . .. . .. . . . . . . ............................................................................... . . . . . . ............. .. . . . ................................................................ . . .... ... . .......... . . . .. . . . .. .. . . . .. ............................................... . . ....... ..... ..... . . . . . . ............... ..... ............ . . ..... . ................................................................... . . . . . . . .. . . . . . ...... . ........ ..... . . . ...... .. .... .... .. . ............. .. . . . . .. . ............................................................. .. . .... . . ... . . ....... . . ... .. .......... .... . ..... . . ............................. . . .. . . .... . . . .. ............................. .... ....... .. . .... ... . .......... . . .. ........ . .... . . . ................ ........ . . . . .. ... . . .. ................... . ..... . ........... . ..... ... ... ............................................................. . . . .. . . . ... . .. . .. . ........... . . . . . ... . .. . . . .. . .. . ...... . ......................... .. . . ... . ......... . . ..... . . ...... . ........ . ...... . . ............. .. . .. .
lowQualScore : 8 5 0 0 77777777777777777777 33 7 7 5 0 0 0 00 0 44 4 6 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 5 0 2 7777777777777 88 0 8 0 0000000000000000000000000000000000000000000000000000000000000000 7 0 2222 777 7 7777777777 8 7 0 22 5 7 7 22 22 7 7 0 33 88888888888888888888888888888888888888888888888 7 0 2222222 77777 88888 0 7 0 8 0 5 333333333333333 77777 777777777777 5 7 77777 0 6666666666666666666666666666666666666666666666666666666666666666666 0 2 0 0 0 5 0 00 0 0 0 0 0 555555 0 88888888 88888 8 0 0 555555 00 0000 5555 00 5 0000000000000 22 3 7 0 2 44 8 7777777777777777777777777777777777777777777777777777777777777 55 4 8888 0 5 555 9 4 7777777 1 2 444 00 8888888888 0000 7 44444 0 0 66666666666666666666666666666 7 1 55 0 5 3333 3 1 8 66 22222222222222222222222222222 1111 0000000 44 1 3333 222 3 1111111111 7 3 88 22222222 5 5555 0 9 4 9999999999999999 33333333 4 0 2 2 22 000 7 7 88 2222222222222222222 5 77777 8 33333333333 5 22222 888 666 7777777777777777777777777777777777777777777777777777777777777 0 5 7 33 7 0 2 888 0 66 0 44 6 44444444444 5 0 0 2 2 888 0 88 7 3 7 33 7 88 3 555555 2 8888888888888888888888888 88 2 2 000 0 000000000 0 0 00000 0 0 000000 5 00000000 0 555555 0 0 0000000000000 55 0 55 0
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG----------A----TCCAAGGCTATACCAAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTAGGTAGTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTT-----------------------CA-----------------------CATCGTTCGATGTGATNTNATNGCACCGCTCTATANCGTCTGGGATTTCAAAAANTT-GAAGTAACCGACC--G-AATGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGNGG-TTTTTTTTTTTAAATTTTA--ATTT--T--------------ACGAATCCTGCAAAACAGTTA-CTA---AA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATATAGG-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------A------------TACAT-------------TC-----TGTAGGGATA------TTAC-----CGAC----TTTCTAGGTT-GAAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGACTC------TG------GA-----AAGT---GAAGTG---CTTACTTT-----TGAATTAAGCATTTCCTTTTTGTAAAAAAACATTATGTTGCGTAAGAAGATAA--G--------AAATGA-CTATCACAGTAGC-ACANATTATGCCTGANACGTATTCTGTACATGAATGCATNCAATAAGCAAGGAACNTAAAACA-CGTATGTTTACAGGCTGNTGACGNT--T--TGTTCCGACTAACAG-A-GGTTTCAGT-GAAATATATCTG-TCNTTAGAATAACCAA-GGNAAAACGGGAGACAAATACCCTAATCCCNTGGAATTC----GTGACTACGCTGT--ATGATTATTAAGGTCTTTCGGGTTCGATGA-GT--C------TANNTNAANTAAGCGANGNNNNNNATCNATNAANT--ATC---------CTGATGTCGAG---TTCTATNAAGTAAACTNG-TGTCAAGTTCTATCGAGTAAACTAGT------GT-CAAGTTCTA---TCGAGT-AAACT------AATNTC-CGGATCCA-CA-NGTAAACTNATGTCATT-C-------TNTTAATCAAGTANAC--GTGTC-A-TTTCTATCGAGTAAACNGGTGTTA-N-ATTNTAT-CAGG--TAA---------------ACT---G-----G-TGTC----GAGTTCTAT---CAAGTAAACT-GATGTCGAG---TTCTATCGAG-TAAACTNGT---G--TCANGTTCTATCGAGTAAA--------CGGATGCC--ATTT-CTATCAA------GT-A------TGTCG---GG---TTCTAC-AA-ATAAACGGGTGTCAGATTC---CGTNA--GAAAAAC-----------------GTGTT-CGTC-----ACTNTCTACCAGGCAAACTGATGCCA-A-GTT-TC--TCAAGTATATTNGCGCCGA--AGTATATCATTTTT--T-----GTCAG----------------CCTTTATCA-ATCA----------------AGTAGGTGGTA-A-GTTGTGTCAAG-TANATTGGTT-G-CCGATTCTT-TCTGGAAGC-AG-T-GCNAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-TTTGT-GT-TGTTT-TCT-ATAAAATAAACTGGTGTCACTTTCTATCANG----TAAACTGGTACAAAGT---CGAA---T--NC-ANGTAAACTAGTGTCATGTTCTGTCTCAA---AAANATANAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGANNTTTTTTTCATAAATTGTTCTCAAGTTGTGTAGA---AGATCCAAAAANNTCCATGGTGTAATAGAAA
Reference ( gi|1 ) : GTGCTGTGTACTAATACATTTAGCTTGATAAATG----------A----C----GGCTACGCCAAGGGTTTTGTGT-AAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTCCAACCGAATAGTT-----------------------CA-----------------------C--TGCTCAATGTGATTTTCTTACA------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC--A-AATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTTTTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAACAGTGA-TTA---AA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATATAGG-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------A------------TACAT-------------TA-----TGTTGGGATG------TTAC-----CGAC----TTTCTAGGTTGGAAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAACTA------TG------GA-----AAGT---G--GTA---CTTACATT-----TGAATTAATCAGTTC----TTATAAAATAACATTAAATTGTATAAGCAGGT-------------A-------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCTAGT-GAAATATATCTGTTCA-CAGAATAGTCAA-CACAAAACGGGAAACCAACCCCCTAATCCCATGGAATGC----CTAGCTTCGCTGT--ATGGTTTTCAAGTTCTCTCGGGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAA---TTCCATCAAGTAAACTTG-TGTCAAGTTCTATAAAGTAAACTAAT------AT-CACGTTCTA---TCAAGT-GAACT------AATTTC-TTGATCCA-CA-CGTAAGTTGATGTCATTCCGGTGTCGTTTTGATCAAACATACACGTGTC-A-TTTCTATTGAATAAGCGGGTGTTA-G-ATTCTAT-CATG--TAA---------------ACA---A-----G-TGTC----AAGTTCTAT---GATATAAACG-GGTGTCAAA---TTCTATAATG-TAAACGGGT---A--TCAAGTTCTATCGGGTAAA--------CGGATGCT--ATTT-CTATCAA------TT-G------TGTTG---GG---TTCTAT-AA-ATAAACGGATGCCAGATTC---CGTAA--GAAAAAC-----------------ATGTTCCATC-----ACTCTCTACCAGACAAACTGATGCCA-ATATT-TC--TCAAGTATATTGACAGCGA--AGTATATCATTT----C-----GTCAA----------------CCTGTATCA-ATCA----------------AATGGGTGGTA-A-TTTGTGTCAAG-TAAATTGATT-A-CGGATTCTT-TCCAGAAGA-AG-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAA-TGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACG----TAAACTG-------GT---CGAA---T--A--AAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAAA-AAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|4 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG----------A----TCCAAGGCTATACCAAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTT-----------------------CA-----------------------CATTGT--GATGTAATATGATGGCACCGCTCTATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTTTTTA---TTTA------------------------CAAATCCTGTAAAACAGTTA-CTA---AA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATATAGA-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------A------------TACAT-------------TC-----TGTAGGGATA------TTAC-----CGAC----TTTCTAGGTTGGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGACTC------TG------GA-----AAGT---GAAGTGGCCCTTACTTT-----TGAATGAATCA--TT----TTGCAAAAAAATA-TATGTTGCGTAAGAAGAT-------------AAATGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTCAGT-GAAATATATCTG-TCATTAGAATAACCAA-GGTAAAACGGGAGACAAATACCTTAATCCCTTGGAATTT----GTGACTACACTGT--ATGATTATTAATGTATGTAGGGCTCGATGATGTACTTAGTACTGTATGAGGTAAGCTGATGTCGAGTTCCATCAAGTAAATTT-----------ATGCCAAG---TTCTATAGAGTAAACTAA-TATCA
gi|3 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG----------A----TCCAAGGCTATAC-AAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTT-----------------------CA-----------------------CATTGT--GATGTAATATGATGGCACCGCTCTATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTTTTTA---TTTA------------------------CAAATCCTGTAAAACAGTTA-CTA---AA-TATGTATAT----GTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTAC-GCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------A------------TACAT-------------TC-----TGTAGGGATA-------TAC-----CGA-----TTTCTAGGTT-GAGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGACTC------TG------GA-----AAGT---GAAGTGGCCCTTACTTT-----TGAATGAATCATTTT----GTGCAAAAAAATA-TATGTTGCGTAAGAAGAT-------------AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-AGGTTTTCAGTGGAAATATATCTG-TCATTAGAATAACCAA-GGTAAAACGGAGA--CAAATACCTAATCCCTTGGAATTT----GTGAC-TCACTGTTGA-GATTTTTAA
gi|5 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG----------ATCCAC----GGCTACGTCAAGGGTTTTTTGT-AAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTAGGTAGTTGTTTACGT-AAGATAGAAGCAGTTTTCTTTCGACCGAATATTT-----------------------CACATTGTAATGTAATATGATGGCGC--CGTTCAAGGTGACTGTACTAGA------TATGCCGTCTGGAATTTCAAAACGTT-G-------AGACT--G-AATGTTACTGCAATAGTAATGATG-------------CTTGTGGGTTTTTTTT------TTTTACGATTT----------------TACGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACATCTACC------------ATTCA-GGCTTGATAATTTAAGGGAAA-ACAGG-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTCTTCTGGCTCTAAAC-------------GA-----TAATGAAATACATTCTTTACGAATATGACAGACTTTTCATGTCGAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGACTC------TG------GA-----AAGTGAAG--ATC---CTAGCTCT-----TAAATTAAGCAtgtatgtaggggctcgtgatgtacttagtactgtatgaggtaagcttgatgtcgagttccatcaagtaaatttatgccaagttctatagagtaaactatatca
gi|10 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatagGTGTTGTGCACTAATGCATTTAGCTTGGTAAATG----------A----TCCAAGGCTATACCAAGGGTTTTTTGT-AAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTTGGTAGTTGTGTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGTGATGTAAGATGATGGCA-----------------------C--CGCTCAATGTGAGTTTCTTAttattt
gi|12 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTGTTGTGCACTAATGCATTTAGCT-GGTAAATG----------A----TCCAAGGCTAT-TCAAGGGTTTT-TGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTT-----------------------CA------------------------------CATTGTGATga
gi|15 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTACTTTGTACAAACGCCTTTAGCTTGGTACATGTAAATACTGTA----C----AGCCGTACCTAAGATACTATGT-AAAACCTTTCACATTAATTATATCGTgt
gi|2 : tcactcattttatatTACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAATGTTGCAACAATGATGATGGTGCTCTG-------------GCCTTTTGTTTTTTAAAATTCATT------TATTTA----------CAAATCCTGCAAAACAGTTA-CTA---AAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATATAGG-TTACCGC-TTTCTGA--GATGAATTGACGTAAA-T-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------A------------TACAT-------------TC-----TGTAGCGATA------TTAC-----CGA-----TTTCTAGGTTTGAAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGACTC------TGGAAAGTGA-----AAGT---G--GTA---C-TACTTT-----TGAATTAAGCA-TTCCTTTTTTTAAAA-AACAT---GTTGTGTAAGAAGATAATGGTCTATCA-A-------------AGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTTAGT-GAAATATATCTG-TCT-TAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAAC--CGCTGT--ATGATTATTAAGGTCTTTCGGGTTCGATGA-------------AGTTATATTATATGAGGTAACTAATGTCTAAGTTCCATCAGTAAACGTC---TGTCAAT---TTCTATAGAGTAAACTAG-TATTACG-TCAATCAAGT-AACTAGT------------------------------------------TTC-CGGATCCA-CA-CCTAAATTCATGTCG---AANNNNNNNNNNNNNNNNNNNNNNNNNTGTCAA-TTTCT-TAGAGTAAACTAGTATTACG-TTTCAAT-CA-G--TAACTAGTTTCCGGATCCACACCTAAATTCA-TGTCGGAAAATTTCTATCAAGGT-TAAACG-GGTGTCCAA---ATGTATCATGTTAAACTGTT---G--TCAAATTCTATCGAGTAAA--------CGGATGCT--ATTTGCAATCAA------GT-A------TGTTGGGTGG---TTCTAC-AA-ATAAACAGGTG-TAGATTT---CATTA--GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATC-----ACTAACTACCAGGC-AACTGATGCCATGTAAT-CT--TTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT-----GTCAGCCTCTATTAATCACATCCTCTATTA-ATCA----------------AGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGG-CGAA-TCTT-TCTTGACGC-AGTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTGTGT-G--TGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTT----TGGACTGGTACAAAGT---CGAA---T--T--AAGTAAACTAGTGTCATGTTCTGTCTCAA---AAATA-ATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTT-TCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAGA-----ATC--AAAAATTCCATGGTGTAATAGAAA
gi|7 : ATGTTGCAACAATGATGATGGTGCTCTGCC------TTT-TGG-----TTTTTTTAAATTT----ATTTATTT-------------ACAAATCCTGCAAAACAGTTA-CTA---AA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATATAGG-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------A------------TACAT-------------TC-----TGTAGCGATA------TTAC-----CGAC----TTTCTAGGTTTGAAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGACTC------TG------GAAAGTGAAGT---G--GTA---CTTACTTT-----TGAATTAAGCA-TTCCTTTTTTTAAAA-AACAT---GTTGTGTAAGAAGATAAATGGTCTATCAA-------------AGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTTAGT-GAAATATATCTGTCCT-TAGAATAACCAA-GAAAAAACGGGAGACAAATACCCTAATCTCGTGGAATTC----GTTACTACGCTGT--ATGATTATTAAGGTCTTTCGGGTTCGATGAt
gi|8 : CGAATCCTGCAAAACAGTTA-CTA---AA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAGAGG-TTACCGC-TTTCTGA--GATGA--TGACGTAAA-TTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGA------------TACATAGCGACATTGAACTACAGTCTGTAGGGATA------TGAC-----CGAC----TTGTTAGATT-GAAAAT-GTACTCTATGTACAGGAAAACAAATTTCTAGGCAAAGCTAAAGCTTTG------GA-----AAGT---GAAGTG---AT--CATTTCTCCTAAATTGAGCATTTA----TTGT--TATAA---TAAATTG-ATTATCA--T---------------------------AGTGGC-ATTAATTATGCCTGA
gi|17 : tgttttttaataCTACGCTGT--ATGATTATTAAGGTCTTTCGGGTTCGATGAg
gi|11 : ttaGCTGT--ATGGTTATTATGTTCTC-AAGGTACTATGAGGTCACATTATATAAGGTAAACTAGTGACGACTTCTATCAAGTAAA---------------CTTGTGTCAAG---TTCTAAAGAGTAAACTAG-CATTACGTTTTATCAAATAAACTGGC------GT-CAGGATCCA----CAGGT-AAATT------GATATCATT--TCTATTA-GGTAAATTTGTGTCATT---------TTTT-ATCAGATAAACAGGTGTC-A-TTTCTATCAAATAAGCGGTTGTCA-A-ATTTTAT-CATA--TAA---------------ACT---G-----A-TGTC----AAGTTCTAT---agttatattatatgaggtaaactaatgtcaagttccatcaagtaaacttctgtaaa
gi|4 : gtaactaaCTGATGTCGAG---TTCCATCAAGTAAATTTA-TGCCAAGTTCTATAGAGTAAACTAAT------AT-CAcgggtaaatgaatactatt
gi|13 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctataccaagggttttatgtaagacgtgtcacatcaattatatcgttatgcacatctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatctgtgataagtatattaaaggcagcataatttcataaatatagattaccgctttctgagatgatgacgtaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatattaccgactttctaggttggaaaacgtacaataagtatagaaaaacaaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgcaaaaaaatatatgttgcgtaagaagataaatgatctatcacagtagtacagattatgcctgatacatattctgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggtttcagtgaaatatatctgtcattagaataaccaaggtaaaacgggagacaaataccttaatcccttggaatttgtgactacactgtatgattattaatgtatgtagggctcgatgatgtacttagtactgtatgaggtaagCTGATGCCAAG---TTATCTCAAGTATATTGG-TGCCGAATTATAT
gi|11 : ataaataaacggatgtcgggttccgtaaagaaaaacatgttccatcactatctaccaggcaaaCTAGTGACGAC---TTCTATCAAGTAAACTTG-TGTCAAGTTCTAAAGAGTAAACTAGC------AT-TACGTTTTA---TCAAAT-AAACT------GGCGTC-AGGATCCA-CA-GGTAAATTGATATCATTTC-------TATTAGGTAAATTT----GTGTC-ATTTTTTATCAGATAAACAGGTGTCA-T--TTCTAT-CAAA--TAA---------------GCG---G-----T-TGTC----AAATTTTAT---CATATAAACT-GATGTCAAG---TTCTATCGGG-TAAATGAAT---A--catttttatgtcagtcattatcaatcaagtaggtggtaaattgtgtcaagtacattggttgccgattccttctggaagcagat
gi|17 : gtaactaagctgtatggttattatgttctcaaggtactatgaggtcacattatataaggtaaaCTAATGTCAAG---TTCCATCAAGTAAACTTC-TGTAAActatt
gi|3 : ttactacgctgtatgattattaaggtctttcgggttcgatgaagttatattatatgaggtaaaTGATGTCGAG---TTCCATCAAGTAAATTTA-TGCCAAGTTCTATAGAGTAAACT-AT------AT-CA
gi|16 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctatacaagggttttatgtaagacgtgtcacatcaattatatcgttatgcactctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatatgtgataagtatataaaggcagcataatttcataaatataagattacgcgtttctgattgatgatgacgtaaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatataccgatttctaggttgagaacagtacaataagtatagaaaaacaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgtgcaaaaaaatatatgttgcgtaagaagataaatgagctatcacagtagtacagattatgcctgatacatattcgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggttttcagtggaaatatatctgtcattagaataaccaaggtaaaacggagacaaatacctaatcccttggaatttgtgactcactgttgagatttttaatgtatgtaggggctcgtgatgtacttagtactgtatgaggtaagctATGTCGAAAATTTCTATCAAGTAAACGGG-TGTCAA
gi|17 : gtcaatttctatagagtaaactagtattacgttcaatcaagtaaactagtttccggatccacacctaaattcA---TTATATGAGGTAAACTAA-TGTCAAGTTCCATCAAGTAAACTa
gi|6 : ttactacgctgtatgattattaaggtctttcgggttcgatgaagttat---TTCTATCAAGTAAACGGG-TGTCAAATTGTATCATGTAAACTGTT------GT-CAAATTCTA---TCGAGT-AAACtctgtaaa
gi|16 : agaatcagaaat---TTCTATAGAGTAAACTAG-TATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCACA-CCTAAATTCATGTCGAA--------AATTTC-T--AT----CA-AGTAAACGGGTGTCAggatgctattgcaatcaagtatgttgggttctacaaataaacaggtgtcagatttcataagaaaaacttgttgtagtgtagtagtgttacatcactatctaccaggcaaactgatgccatgttatcttaagtgtatttgcgccgaagtatatcatttttatgtcagcctctattaatcacatcctctattaatcaagtaggtggtaagttgtgtcaagtatattggttggcgaatctttcttgacgcagttaccagaatctatcaattgtcgagatttaacaaatgcaattaagtcaagttgtgttgttctctaaaaaatcaactggtatcacttttactatgtggactggtacaaagtcgaattaagtaaactagtgtcatgttctgtctcaaaaataaagtaaattatagttgtaccacactctaccgtgaaaagggtgcacagttttcaattctaaatgtaccaaatagtgatttttttcataattgttctcaagttgtgtagattcaaaaatgtccatggtgatagaaat
gi|4 : gtcaatATGAGGTAAGCTGA-TGTCGAGTTCCATCAAGTAAATTTAT------GC-CAAGTTCTA---TAGAGT-AAACT------AATATC-aa
gi|3 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctataccaagggttttatgtaagacgtgtcacatcaattatatcgttatgcacatctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatctgtgataagtatattaaaggcagcataatttcataaatatagattaccgctttctgagatgatgacgtaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatattaccgactttctaggttggaaaacgtacaataagtatagaaaaacaaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgcaaaaaaatatatgttgcgtaagaagataaatgatctatcacagtagtacagattatgcctgatacatattctgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggtttcagtgaaatatatctgtcattagaataaccaaggtaaaacgggagacaaataccttaatcccttggaatttgtgactacactgtatgattattaatgtatgtagggctcgatgatgtacttagtactgtATGAGGTAAGCTTGATGTCGAGTTCCATCAAGTAAATTTAT------GC-CAAGTTCTA---TAGAGT-AAACT------Aa
gi|16 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctatacaagggttttatgtaagacgtgtcacatcaattatatcgttatgcactctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatatgtgataagtatataaaggcagcataatttcataaatataagattacgcgtttctgattgatgatgacgtaaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatataccgatttctaggttgagaacagtacaataagtatagaaaaacaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgtgcaaaaaaatatatgttgcgtaagaagataaatgagctatcacagtagtacagattatgcctgatacatattcgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggttttcagtggaaatatatctgtcattagaataaccaaggtaaaacggagacaaatacctaatcccttggaatttgtgactcactgttgagatttttaatgtatgtaggggctcgtgatgtacttagtactgtGTCAATTTCTATAGAGTAAACTAGT------AT-TACGTTCAA---TCAAGT-AAACT------AGTTTC-CGGATCCA-CA-CCTAAATTCATGTCtatca
gi|6 : AATTTCTATCAAGTAAACGGGT------GT-CAAATTGTA---TCATGT-AAACTGTTGTCAAATTC-T--ATCGA-----GTAAACGGATGCTATTGC-----------AATCAAGTAT----GT-TG-G-GTTCTA-CAAATAAACAGGTGTCA-G-ATTTCAT-gaaaatttctatcaagtaaacgggtgtcaaa
gi|17 : agaatcagaTTATATGAGGTAAACTAAT------GT-CAAGTTCCA---TCAAGT-AAACT------aagaaaaacttgttgtagtgtagtagtgttacatcactatctaccaggcaaactgatgccatgttatcttaagtgtatttgcgccgaagtatatcatttttatgtcagcctctattaatcacatcctctattaatcaagtaggtggtaagttgtgtcaagtatattggttggcgaatctttcttgacgcagttaccagaatctatcaattgtcgagatttaacaaatgcaattaagtcaagttgtgttgttctctaaaaaatcaactggtatcacttttactatgtggactggtacaaagtcgaattaagtaaactagtgtcatgttctgtctcaaaaataaagtaaattatagttgtaccacactctaccgtgaaaagggtgcacagttttcaattctaaatgtaccaaatagtgatttttttcataattgttctcaagttgtgtagattcaaaaatgtccatggtgatagaaat
gi|4 : ttactacgctgtatgattattaaggtctttcgggttcgatgaagttataTATGAGGTAAGCTGAT------GT-CGAGTTCCA---TCAAGT-AAATT------TATGCC-AAGTTCTA-TAGAGTAAACTAATATCAtctgtaaa
gi|11 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctataccaagggttttatgtaagacgtgtcacatcaattatatcgttatgcacatctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatctgtgataagtatattaaaggcagcataatttcataaatatagattaccgctttctgagatgatgacgtaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatattaccgactttctaggttggaaaacgtacaataagtatagaaaaacaaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgcaaaaaaatatatgttgcgtaagaagataaatgatctatcacagtagtacagattatgcctgatacatattctgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggtttcagtgaaatatatctgtcattagaataaccaaggtaaaacgggagacaaataccttaatcccttggaatttgtgactacactgtatgattattaatgtatgtagggctcgatgatgtacttagtactgATCAAGTAAACTTGTGTC-AAGTTCTAAAGAGTAAACTAGCATTA-C-GTTTTAT-CAAA--TAA---------------ACT---G-----G-CGTC----AGGATCCAC----AGGTAAATT-GATATCAT----TTCTATTAGG-TAAATTTGT---G--TCATTTTTTATCAGATAAA--------CAGGTGTC--ATTT-CTATCAA------AT-AAGCGGTTGTCA---AA---TTTTAT-CATATAAACTGATGTCAAGTTC---
gi|16 : gtaactaagctgtatggttattatgttctcaaggtactatgaggtcacattatataaggtaaactagtgacgacttctGTC-AATTTCTATAGAGTAAACTAGTATTA-C-GTTCAAT-CAAG--TAA---------------ACT---A-----G-TTTC----CGGATCCAC----ACCTAAATT-CATGTCGAAAATTTCTATCAAG-TAAACGGGT---G--TCAAtatcgggtaaatgaatactatt
gi|6 : -A-TTTCTATCAAGTAAACGGGTGTCA-A-ATTGTAT-CATG--TAA---------------ACT---G-----T-TGTC----AAATTCTATC--GA-GTAAACG-GATG----------CTAT--TG-CAATCAAGT---ATGTTGGGTTCTA-CAAATAAA--------CAGGTGTCAGATTT-Ca
gi|9 : agaatcagaaTCTATCAAATAAGCTAGTGTTA-A-TTCCCATACATGTTTAA---------------ACataagaaaaacttgttgtagtgtagtagtgttacatcactatctaccaggcaaactgatgccatgttatcttaagtgtatttgcgccgaagtatatcatttttatgtcagcctctattaatcacatcctctattaatcaagtaggtggtaagttgtgtcaagtatattggttggcgaatctttcttgacgcagttaccagaatctatcaattgtcgagatttaacaaatgcaattaagtcaagttgtgttgttctctaaaaaatcaactggtatcacttttactatgtggactggtacaaagtcgaattaagtaaactagtgtcatgttctgtctcaaaaataaagtaaattatagttgtaccacactctaccgtgaaaagggtgcacagttttcaattctaaatgtaccaaatagtgatttttttcataattgttctcaagttgtgtagattcaaaaatgtccatggtgatagaaat
gi|11 : ttacaataacggatataaaattcacacgtaaaagaaaaagtttttcattgcgctactctctacgcgataaattagtccaagttcttcacgtatattgatgccgtttagtatttgtttttcaaggtcagcctaatcattaaatatattgtacagttgtgtcaagttatatcgttgctgattcttatctggaacatggtgcaggatctatcaagtgtcaaaatctaatacgctcaatttagtccatttgtggtatgtttgGTCA-C-ATTATAT-AAGG--TAA---------------ACT---A-----G-TGAC----GACTTCTAT---CAAGTAAACT-TGTGTCAAG---TTCTAAAGAG-TAAACTAGC---A--TTACGTTTTATCAAATAAA--------C---TG-------------------------G------CGTCA---GG---ATCCAC-AG-GTAAATTGATATCAT-TTC---TATTA--GGTAAAT-----------------TTGT---GTC-----ATTTTTTATCAGATAAACAGGTGTC----ATT-TCTATCAAATA-------AGCGG-------------T----T-----GTCAA----------------ATTTTATCATAT-A----------------AACTGATGTCA-A-GTTCTATCGGG-TAAA-TGAAT-A-Cggta
gi|17 : gtaactaagctgtatggttattatgttctcaaggtactatgagGTTA-T-ATTATAT-GAGG--TAA---------------ACT---A-----A-TGTC----AAGTTCCAT---CAAGTAAACtatt
gi|4 : ttactacgctgtatgattattaaggtctttcgggttcgatgaaTTA-GTACTGTAT-GAGG--TAA---------------GCT---G-----A-TGTC----GAGTTCCAT---CAAGTAAATT-TATGCCAAG---TTCTATAGAG-TAAACTAAT---A--TCAttctgtaaa
gi|3 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctataccaagggttttatgtaagacgtgtcacatcaattatatcgttatgcacatctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatctgtgataagtatattaaaggcagcataatttcataaatatagattaccgctttctgagatgatgacgtaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatattaccgactttctaggttggaaaacgtacaataagtatagaaaaacaaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgcaaaaaaatatatgttgcgtaagaagataaatgatctatcacagtagtacagattatgcctgatacatattctgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggtttcagtgaaatatatctgtcattagaataaccaaggtaaaacgggagacaaataccttaatcccttggaatttgtgactacactgtatgattattaatgtatgtagggctcgatgatgtacTTA-GTACTGTAT-GAGG--TAA---------------GCT---T-----GATGTC----GAGTTCCAT---CAAGTAAATT-TATGCCAAG---TTCTATAGAG-TAAAC
gi|11 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctatacaagggttttatgtaagacgtgtcacatcaattatatcgttatgcactctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatatgtgataagtatataaaggcagcataatttcataaatataagattacgcgtttctgattgatgatgacgtaaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatataccgatttctaggttgagaacagtacaataagtatagaaaaacaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgtgcaaaaaaatatatgttgcgtaagaagataaatgagctatcacagtagtacagattatgcctgatacatattcgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggttttcagtggaaatatatctgtcattagaataaccaaggtaaaacggagacaaatacctaatcccttggaatttgtgactcactgttgagatttttaatgtatgtaggggctcgtgatgtacTTCTAT-CAAG--TAA---------------ACT---T-----G-TGTC----AAGTTCTAA---AGAGTAAACT-AGCATTACG---TTTTATCAAA-TAAACTGGC---G--TCAGGATCCA-CAGGTAAA--------TTGATATC--ATTT-CTATTAGGTAAATTT-G------TGTCA---TT---TTTTATCAG-ATAAACAGGTGTCAT-TTC---TATCA--AATAAGC-----------------G-GTT--GTC-----AAATTTTATCATATAAACTGATGTCA-AGTTC-TA--TCGGGTAAATtatatca
gi|6 : gtaactaagctgtatggttattatgttctcaaggtactatgaggtcacattatataaggtaaactagtgacgac----AATTTCTAT---CAAGTAAACG-GGTGTCAAA---TTGTATCATG-TAAACTGTT---G--TCAAATTCTATCGAGTAAA--------CGGATGCT--ATTG-CAATCAA------GT-A------TGTTG---GG---TTCTAC-AA-ATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGTA-GTGTTACATC-----ACTATCTACCAGGCAAACTGATGCCA--TGTTATC--TTAAGTGTATTTGCGCCGA--AGTATATCATTT----TTAT--GTCAG----------------CCTCTATTA-ATCACATCCTCTATTAATCAAGTAGGTGGTA-A-GTTGTGTCAAG-TATATTGGTT-GGCGAAT-CTT-TCTTGACGC-AG-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTT-TACTATG----TGGACTGGTACAAAGT---CGAA---T--T--AAGTAAACTAGTGTCATGTTCTGTCTCAA-----AAATAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGT--GATTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAgaatactatt
gi|4 : agaatcagaTAT---GAGGTAAGCT-GATGTCGAG---TTCCATCAAG-TAAATTTAT---G--CCAAGTTCTATAGAGTAAA--------Ct
gi|3 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctataccaagggttttatgtaagacgtgtcacatcaattatatcgttatgcacatctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatctgtgataagtatattaaaggcagcataatttcataaatatagattaccgctttctgagatgatgacgtaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatattaccgactttctaggttggaaaacgtacaataagtatagaaaaacaaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgcaaaaaaatatatgttgcgtaagaagataaatgatctatcacagtagtacagattatgcctgatacatattctgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggtttcagtgaaatatatctgtcattagaataaccaaggtaaaacgggagacaaataccttaatcccttggaatttgtgactacactgtatgattattaatgtatgtagggctcgatgatgtacttagtactgTAT---GAGGTAAGCTTGATGTCGAG---TTCCATCAAG-TAAATTTAT---G--CCAAGTTCTATAGAGTAAA--------Ctaatatca
gi|13 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctataggtgttatgcattaatgcatttagcttggtaattgatccaaggctatacaagggttttatgtaagacgtgtcacatcaattatatcgttatgcactctcttgctagaagtaagtgggaagtatttgtttacataagatagaatcagttttctttcgaccgaatatttcacattgtgatgtaatatgatggcaccgctctataacgtctgggatttcaaaaatttgaagtaactggttgcagcaatgatggtggtgcttgggcttttggggttttttatttacaaatcctgtaaaacagttactaaatatgtatatgtgataagtatataaaggcagcataatttcataaatataagattacgcgtttctgattgatgatgacgtaaaatcctatatacgattttggcagatgtccgaacacgtgtttattgaaatacattctgtagggatataccgatttctaggttgagaacagtacaataagtatagaaaaacaatttctatgacagactctggaaagtgaagtggcccttacttttgaatgaatcattttgtgcaaaaaaatatatgttgcgtaagaagataaatgagctatcacagtagtacagattatgcctgatacatattcgtacatgaatgcattcaataagcaagaaacttaaaacacgtatgtttacaggctgttaacggtttgttccgattaacagaggttttcagtggaaatatatctgtcattagaataaccaaggtaaaacggagacaaatacctaatcccttggaatttgtgactcactgttgagatttttaatgtatgtaggggctcgtgatgtacttagtactgATAAACG-GATGTCGGG---TTCCGTAAAGAAAAACATGTTCCA--TCACTATCTACCAGGCAAA--------CTGATGCCA-AGTT-ATCTCAA------GT-A------TATTG---Gtatatca
gi|16 : ataaGTCAAT---TTCTATAGAG-TAAACTAGT---A--TTACGTTCAATCAAGTAAACTAGTTTCCGGAT-CC--ACAC-CTA--AA------TTCA------TGTCG---AAAATTTCTATCAA-GTAAACGGGTGTCAAAtgccgaattatatcatttttatgtcagtcattatcaatcaagtaggtggtaaattgtgtcaagtacattggttgccgattccttctggaagcagat
gi|17 : GTTATA---TTATATGAGG-TAAACTAAT---G--TCAAGTTCCATCAAGTAAA--------C
gi|13 : ttactacgctgtatgattattaaggtctttcgggttcgatgaaAT-AA-ATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATC-----ACTATCTACCAGGCAAACTGATGCCA-A-GTTATC--TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T-----GTCAG----------------TCATTATCA-ATCA----------------AGTAGGTGGTA-A-ATTGTGTCAAG-TACATTGGTT-G-CCGATTCCT-TCTGGAAGC-AG-ttctgtaaa
gi|9 : A-ATAA-CGGATATAAAATTCACACGTAAAAGAAAAA------------------GTTTTTCATTGCGCTACTCTCTACGCGATAAATTAGT-CCA-A-GTT-CT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTT----TTCAAGGTCAG----------------CCTA-ATCA--TTA----------------AATATATTGTACA-GTTGTGTCAAGTTATATCG-TT-G-CTGATTCTTATCTGGAACATGG-T-GCA-GGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCA-TTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGTTTAAAC-G-------GT---at
gi|14 : ttac-----GCCAG----------------CCTTTATCA-ATCT----------------TGTAGGTGGTA-A-ATTGTGTCAAG-TAAATTGGTT-G-CTGATTCCT-TCTGAAAGC-AGAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTa
gi|11 : cactcttttatATTAGGTAAA-TTTGT-GT-CATTT-TTT-ATCAGATAAACAGGTGTCA-TTTCTATCAAA----TAAGCGGTT-----GT---CAAATTTT--ATCATATAAACTGATGTCA
gi|17 : gtaactaagctgtatggttattatgttctcaaggtactatgaggtcacattatataaggtaaactagtgacgacttctatcaagtaaacttgtgtcaagttctaaagagtaaactagcattacgttttatcaaataaactggcgtcaggatccacaggtaaattgatatcatttct-GT-TATAT-TAT-ATGAGGTAAACTAATGTCAAGTTCCATCAAG----TAAACTagttctatcgggtaaatgaatactatt
gi|16 : ttactacgctgtatgattattaaggtctttcgggttcgatgaaTT-TCT-ATAGAGTAAACTAGTATTACGTTCAATCAAG----TAAACTA-------GTTTCCGGA---TCCAC-ACCTAAATTCATGTCtctgtaaa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 111 111 44 55555555555555555 333333333 22222222222 33333333333333333333333333333333333333333333333333333333 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 333 111 55555555555555555555 66666666666 1 222222 11111 666666666666666666666666666666666666666666666 1 1 777777777777777777777777777777777777777777777777777 11 22222 111 11 1 2 11 22222 11 999999999999999999999999999999999 1 222 111 11 2222222222222222222222222222222 1111 11 333333 8888888888888888 1 11 1 2 1 1 22222222222 44 444444444 2222 2 3333333 111 33
lowQualScore : 1 000 0 000 1 2 7 5 0 6 99 6 3 2 6 6 22 2 1 1 1 66666666666666666 1 1 8 0 77 333333333 00000000000 22222222222222222222222222222222222222222222222222222222 2222 5 0 1 00 11 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 1 00000000 5 4 1 5 1 5 5 1 8888888 5 5 000 77 000 0 8 88888888888888888888 2 55555555555 5 6 1 1 0 1 1 8 666666 1 1 33333 8 8 8 8 8 99 1 3 999 77 777 5 000000000000000000000000000000000000000000000 6 2 11 77 1 0 1 3 9 3 4 6 3 2 1 2 0 33 2 1 444444444444444444444444444444444444444444444444444 33 1 44444 111 7 3 0 1 33 1 3 0 7 88 9 3 44 3 33333 4 99 33 88 777777777777777777777777777777777 6 3 8 6 333 0 0 5 444 1 99 1111111111111111111111111111111 1 0 99 8888 1 11 0 3 000000 3 8888888888888888 6 6 6 1 6 1 99 3 8 8 1 1 22 0 0 0 0 77 3 66666666666 3 2 11 1 111111111 1 7 7 6 5555 3 5555555 666 22 00
lowQualScore : . ... . ... . . . . . . .. . . . . . .. . . . . ................. . . . . .. ......... ........... ........................................................ .... . . . .. .. . .. . . . .. .. . . .. . ......... .................. .... . .............. . ........ . . . . . . . . ....... . . ... .. ... . . .................... . ........... . . . . . . . . ...... . . ..... . . . . . .. . . ... .. ... . ............................................. . . .. .. . . . . . . . . . . . . . .. . . ................................................... .. . ..... ... . . . . .. . . . . .. . . .. . ..... . .. .. .. ................................. . . . . ... . . . ... . .. ............................... . . .. .... . .. . . ...... . ................ . . . . . . .. . . . . . .. . . . . .. . ........... . . .. . ......... . . . . .... . ....... ... .. ..
lowQualScore : 7 000 7 000 3 3 6 7 4 7 22 7 0 5 7 0 77 8 0 0 0 00000000000000000 0 0 0 8 88 333333333 00000000000 00000000000000000000000000000000000000000000000000000000 1111 7 1 4 99 11 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 4 77777777 7 3 4 7 4 7 4 4 6666666 7 7 000 99 000 7 4 00000000000000000000 2 33333333333 2 7 0 0 6 0 0 0 444444 0 0 00000 0 0 0 0 8 00 0 7 666 99 111 7 888888888888888888888888888888888888888888888 7 7 88 33 0 8 0 3 0 2 0 0 2 2 0 5 0 55 0 0 888888888888888888888888888888888888888888888888888 88 0 22222 000 3 7 7 0 33 0 3 3 3 33 0 2 22 0 22222 2 88 88 00 000000000000000000000000000000000 0 3 3 0 333 8 8 0 000 0 00 2222222222222222222222222222222 0 8 44 0000 0 00 8 2 222222 5 3333333333333333 7 7 7 0 7 0 22 3 0 8 0 2 22 0 0 0 0 55 0 88888888888 2 5 00 0 000000000 0 3 3 7 3333 7 3333333 777 00 77
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGT-AAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGNAGGTANTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACCGACC-AA---TGTTGCAGCAATGATGATGGTGCTCGG-----GC-TTTTGGGG-----------------------TTTTTTTTTT-A--TT---T---TAATTTTACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATATAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAG-TGG--CT--TA---CTTTTGAATTAAGCATTTC---TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAA--AA-TGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GG-TTTTAGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTACATTAAGTA--C-----------TGTATGAGGT-A--CTGATGTC-GAGTTCCATCAAGTAAACTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTNAT------------------------GTCGAAA---ATTC--------TCTTGATCAA--GTAAA--C--GTGTC-A-TTTCTATCGAATAAACGGGTGTTACGTTCT-ATCA-GTAAACGAGTGTCAAGTTCTATCATATAAACGGGTGTCA----AATTCTATCANG--TAAACGGGTG----------TCAAGTT----------------CTATCGAGTAAACGGATGCTATTT-CAATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGTA-GTGTTN-----C-ATCACTATCTACCAGGCAAACTGATGCCAA-GT--TATCTCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCAC-TATG--TGGACTGGTACAAAGTCGAATT-AAGTAAACTAGTGTCACGTTCTGTCTCAA---AAA-A-AAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTAGGTAGTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATCGTTCGATGTGATNTNATNGCACCGCTC-----------------TATANCGTCTGGGATTTCAAAAANTT-GAAGTAACCGACCGAA---TGTTGCAGCAATGATGATGGTGCTCGG-----GC-TTTTGNGG-----------------------TTTTTTTTTTTAAATT---T---TAATTTTACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATATAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAG-TG---CT--TA---CTTTTGAATTAAGCATTTCCTTTTTGTAAAAAAACATTATGTTGCGTAAGAAGATAAGAAA-TGA-CTATCACAGTAGC-ACANATTATGCCTGANACGTATTCTGTACATGAATGCATNCAATAAGCAAGGAACNTAAAACA-CGTATGTTTACAGGCTGNTGACGNT--T--TGTTCCGACTAACAG-A-GG-TTTCAGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCNTGGAATTCGTGACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAGTCTANNTNAANTAAGCGANGNNNNNNATCNATNAANT-ATCCTGATGTC-GAGTTCTATNAAGTAAACTNGTGTCAAGTTCTATCGAGTAAACTAGTGTCAAGTTCTATCGAGTAAACTAATNTCCGGATCCA-CANGTAAACTNAT------------------------GTC-------ATTC--------TNTTAATCAA--GTANA--C--GTGTC-A-TTTCTATCGAGTAAACNGGTGTTANATTNT-ATCAGGTAAACTGGTGTCGAGTTCTATCAAGTAAACTGATGTCG----AGTTCTATCGAG--TAAACTNGTG----------TCANGTT----------------CTATCGAGTAAACGGATGCCATTT-CTATCAAGTATGTCG---GGTTCTACAAATAAACGGGTGTCAGATTC---CGTNA--GAAAAAC-----------------GTGTT------C-GTCACTNTCTACCAGGCAAACTGATGCCAA-GT--T-TCTCAAGTATATTNGCGCCGA--AGTATATCATTTTT--T---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCNAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATTTGT-GT-TGTTT-TCT-ATAAAATAAACTGGTGTCACTTTCTAT-CANG--TAAACTGGTACAAAGTCGAATNCANGTAAACTAGTGTCATGTTCTGTCTCAA---AAANATANAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGANNTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AAGATCCAAAAANNTCCATGGTGTAATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGT-AAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACCAAA---TGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGT-TTTTGTGGCTTTTTTTTTTTAAATTTTATTATTTTTTTTTTGG-------T---TGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATATAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---G-TA---CT--TA---CATTTGAATTAATCAGTTC----TTATAAAATAACATTAAATTGTATAAGCAGGTA-----------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGA-TTCTAGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNT---CTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACTAATTTCTTGATCCACACGTAAGTTGATGTC-------ATTCCGGTGTCGTTTTGATCAAACATACA--C--GTGTC-A-TTTCTATTGAATAAGCGGGTGTTAGATTCT-ATCATGTAAACAAGTGTCAAGTTCTATGATATAAACGGGTGTCA----AATTCTATAATG--TAAACGGGTA----------TCAAGTT----------------CTATCGGGTAAACGGATGCTATTT-CTATCAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGTAA--GAAAAAC-----------------ATGTTC-----C-ATCACTCTCTACCAGACAAACTGATGCCAATAT--T-TCTCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCAC-TACG--TAAACTG-------GTCGAATA-AAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAAA-AAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGT-AAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTTGGTAGTTGTGTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTATATAAG---------------GTAAACT-A-----GTGAC-GACTTCTATCAAGTAAACTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGAT------------------------ATC-------ATT---------TCT--ATTAG--GTAAATTT--GTGTC-ATTTTTTATCAGATAAACAGGTGTCAT-TTCT-ATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTCA----AGTTCTATCGGG--TAAAgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTT-TGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTtgaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTT------CCATCACTATCTACCAGGCAAACTGATGCCAA-GT--TATCTCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGT-AAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCAT------------------------GTCGAAA---ATT---------TCT--ATCAA--GTAAA--CGGGTGTC-A-
gi|17 : ACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA--TA--TGAGG-----------TAAACT-A-----ATGTC-AAGTTCCATCAAGTAAACTTCTGTAAAaa
gi|2 : ttTACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAATGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG------------------------------TTTTTTAAAATTCATT---TA--TTTACAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATATAGG-TTAC-CGCTTTCTGA--GATGAATTGACGTAAA-T-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAG-TG---GTACTA---CTTTTGAATTAAGCA-TTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT----AA-TGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GG-TTTTAGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA--------------------TATGAGGT-A-ACTAATGTCTAAGTTCCATC-AGTAAACGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCAT------------------------GTCGAANNNNNNNN--------NNNNNNNNNN--NNNNN--N--NTGTCAA-TTTCT-TAGAGTAAACTAGTATTACGTTTCAATCA-GT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTATCAAGGTTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATTTGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CATTA--GAAAAACTTGTTGTAGTGTAGTAAGTGTTA-----C-ATCACTAACTACCAGGC-AACTGATGCCAT-GTAAT-CTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TAC-TCTT--TGGACTGGTACAAAGTCGAATT-AAGTAAACTAGTGTCATGTTCTGTCTCAA---AAATA-ATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---A--ATC--AAAAATTCCATGGTGTAATAGAAA
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG----------GTTGCAGCAATGATGGTGGTGCTTGG-----GC-TTTTGGGG-----------------------TTTTTT-------------------ATTT-ACAAATCCTGTAAAAC----AGTTACTAAA-TATGTATATGT----GATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTACGCG-TTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------T-AC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAACAA-TTTCTATGACAGA-------CTCTGGAAAGTG-AAG-TGGCCCT--TA---CTTTTGAATGAATCATTT----TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGATAA---A-TGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGA-TGTACTT--AGTA--C-----------TGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAATTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGT-AAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG----------GTTGCAGCAATGATGGTGGTGCTTGG-----GC-TTTTGGGG-----------------------TTTTTT-------------------ATTT-ACAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATATAGA-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAG-TGGCCCT--TA---CTTTTGAATGAATCATTT------TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAA---A-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GG-TTTCAGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGA-TGTACTT--AGTA--C-----------TGTATGAGGT-AAGCTGATGTC-GAGTTCCATCAAGTAAATTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGT-AAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTAGGTAGTTGTTTACGT-AAGATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA-------GACTGAA---TGTTACTGCAATAGTAATGATGCTTG------------TGGGT-----------------------TTTTTTTTTTTA-----------CGATTTTACGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-ACAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAGATC---CT--AG---CTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatagTTCTATCAAGTAAACGGGTGTCA----AATTGTATCATG--TAAACTGTTG----------TCAAATT----------------CTATCGAGTAAACGGATGCTATTG-CAATCAAGTATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGTA-GTGTTA-----C-ATCACTATCTACCAGGCAAACTGATGCCAT-GT--TATCTTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTT-TAC-TATG--TGGACTGGTACAAAGTCGAATT-AAGTAAACTAGTGTCATGTTCTGTCTCAA---AAA--TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaaatA---TGTTGCAACAATGATGATGGTGCTCTG-----CC-TTTTGG-----------------------------TTTTTTTAAATT---TATTTA--TTTACAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATATAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAG-TGGTACT--TA---CTTTTGAATTAAGCA-TTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT---AAA-TGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GG-TTTTAGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TT---T---TAAT---ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAGAGG-TTAC-CGCTTTCTGA--GATGA--TGACGTAAA-TTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAG-TG---AT--CATTTCTCCTAAATTGAGCATTT-----------------AT--TGTT----------ATAATAAATTGA-TTATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgttTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAA------------------GTTTTTCATTGC-GCTACTCTCTACGCGATAAATTAGT-CCAA-GT--T-CTTCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-GC-AGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCATACATGTTTAAAC-GGTAg
Alignments
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 9999999999999999999999999999999999999999 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 333333 2222222222 1 1 999999999999999999999999999999999999999999999 111 11 333 2 11 111 22 1 9999999999999999999999999999999999 1 1 8888888888888888888888 222 33333 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 4 3333333333 88888888 000 4444444444444444444444444444444444444444 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 7 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 3 9 9 33333333 888888 6 0 9999999999 1 1 1 3 1 3 1 1 0 22 0 0 777777777777777777777777777777777777777777777 444 0 7 0 22 1 777 6 0 7 1 1 4 0 66 99 11 333 8 1 22 3 9999999999999999999999999999999999 3 3 3333333333333333333333 333 33333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . . .......... ........ ... ........................................ .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ ...... . . .......... . . . . . . . . . .. . . ............................................. ... . . . .. . ... . . . . . . . .. .. .. ... . . .. . .................................. . . ...................... ... ..... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 6 7777777777 22222222 777 8888888888888888888888888888888888888888 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 1 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 8 0 0 22222222 555555 7 8 2222222222 5 0 0 2 0 2 0 0 0 00 8 2 222222222222222222222222222222222222222222222 888 7 3 7 77 0 333 7 7 3 0 0 2 8 22 66 00 222 0 0 00 3 7777777777777777777777777777777777 3 3 7777777777777777777777 333 33333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGNAGGTANTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGGTTTTTTT----TTT----ATTT----ATTTT----------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TTG-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGT--AAG-CTAATGTC-GAGTTCCATCAAGTAAA----------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA---AATT-TCTTGAT---CANGTAAA--T-G-----------GTGTC-A-TTTTTATCGAATAAACANGTGTCAT--TTCTATCGAATAAGCGGGTGTCAGATTCTATCANGTAAACTGGTGTC--AAG--TTCTAT-CATG-TTAAACGGGTGT-CAA---------ATT---CTATCG-------------AGTAAACGGATG-CTATTT-CAATCGAGT------ATG-------------TTG---GGTT-----CTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGNAGGTANTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACCGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGGTTTTTTT----TTT----ATTTTA--ATTTT----------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TTG-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTACATTAAGTACTGTATGAGGT--A---CTGATGTC-GAGTTCCATCAAGTAAA----------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTNATGTCGAA---AATTCTCTTGAT---CAAGTAAA--C-------------GTGTC-A-TTTCTATCGAATAAACGGGTGTTACG-TTCTATC-AGTAAACGAGTGTCAAGTTCTATCATATAAACGGGTGTC--AAA--TTCTAT-CANG--TAAACGGGTGT-CAA---------GTT---CTATCG-------------AGTAAACGGATG-CTATTT-CAATCAAGT------ATG-------------TTG---GGTT-----CTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTT----TTTTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGGAAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNN--N---NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT------------AATT-TCTTGATCCACACGTAAG--TTGATGTCATTCCGGTGTC-G-TTTTGATCAAACATACACGTGTCAT--TTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC--AAG--TTCTAT-GATA--TAAACGGGTGT-CAA---------ATT---CTATAA-------------TGTAAACGGGTATCAAGTT-CTATCGGGTAAACGGATGCTATTTCTATCAATTG---TGTTGGGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTTGGTAGTTGTGTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGT--AAA-CTAGTGAC-GACTTCTATCAAGTAAA----------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC-------ATT-TCT--AT---TAGGTAAATTT-------------GTGTC-ATTTTTTATCAGATAAACAGGTGTCAT--TTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC--AAG--TTCTAT-CGGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA---AATT-TCT--AT---CAAGTAAA--CGG-----------GTGTC-A-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAA---CTAATGTC-AAGTTCCATCAAGTAAA----------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG---TTTTTTAAAATTC----ATTT----ATTT-----------------ACAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTTG-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTA-A---CTAATGTCTAAGTTCCATC-AGTAAA----------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNNNN---NNNNNNNN--N-------------NTGTCAA-TTTCT-TAGAGTAAACTAGTATTACGTTTCAATC-AGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGGTTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATG-CTATTTGCAATCAAGT------ATG-------------TTGGGTGGTT-----CTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG----TTT----TTT----A---------TTT----------------ACAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TTG-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGT--AAGCTTGATGTC-GAGTTCCATCAAGTAAA----------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCT-AGAAGTAAGTGGGAAGTATTTGTTTACAT-AAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGGTTTTTT--------------------ATTT-----------------ACAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TTGGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGT--AAG-CTGATGTC-GAGTTCCATCAAGTAAA----------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCT-AGAAGTAAGTGGTAGGTAGTTGTTTACGT-AAGATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG--------T----GGGTTTTTTT----TTT-----TTACG--ATTTT----------------ACGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TCGAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatagAATTTCTATCAAGTAAACGGGTGTC--AAA--TTGTAT-CATG--TAAACTGTTGT-CAA---------ATT---CTATCG-------------AGTAAACGGATG-CTATTG-CAATCAAGT------ATG-------------TTG---GGTT-----CTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTTGG--TTTTTTTAAA-TTT----ATTT----ATTT-----------------ACAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTTG-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTTTA--AT-------------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TTG-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgttTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCAg
gi|9 : tTCTATCAAATAAGCTAGTGTT--AAT--TCCCATACATGTTTAAACGGtacatgtttaaacggta
Alignments
lowQualScore : 2222222222222222222222222
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 333333 2222222 66666666666666 1 11 1 111 1111 111111111 1 2 6666666666666666666666666 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 222222 7777777 1 88888888888888 0 4 0 1 88 2 6 777 0 22 22 7777 3 888888888 99 3 4 6 8 7 8 1111111111111111111111111 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ...... ....... . .............. . . . . .. . . ... . .. .. .... . ......... .. . . . . . . ......................... ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 222222 8888888 0 55555555555555 0 0 7 0 33 0 7 555 8 44 44 0000 2 222222222 00 3 7 7 3 7 3 7777777777777777777777777 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA---AATTTCTTGAT---CANGTAAA-C------------GGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGA---TTCTATCANGTAAACTGGTGTC----AANTTCTAT-C-ATG-TTAAACGGGTGTCAAATTCTATCGTG-TAAACGGNTGTCAANTTCTATCGAGTAAACGGATGCTATTT-CA-C-A----TGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA---AATTTCTTGAT---CANGTAAA-T------------GGTGTCA-TTTTTATCGAATAAACANGTGT--CATTTCTATCGAATAAGCGGGTGTCAGA---TTCTATCANGTAAACTGGTGTC----AAGTTCTAT-C-ATG-TTAAACGGGTGTCAAATTCTATCGAG-TAAACGGATG-CTATTTCAATCGAGTA-------------------------TGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT------------AATTTCTTGATCCACACGTAAG-TTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGA---TTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCTATCAATTG-TGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC-------ATTTCT--AT---TAGGTAAATT------------TGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAA---TTTTATCATATAAACTGATGTC----AAGTTCTAT-C-G-G-GTAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA---AATTTCT--AT---CAAGTAAA-CG-----------GGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNNN---NNNNNNNN-N------------NNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGG---ATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATTTGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatagTCAGAAATTTCTATCAAGTAAACGGGTGTC----AAATTGTAT-C-ATG-T-AAACTGTTGTCAAATTCTATCGAG-TAAACGGATG-CTATTGCAATCAAGTA-------------------------TGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 333333 2222222 66666666666666 1 11 1 1111 222222222 1 111111111111111111111 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 222222 7777777 1 88888888888888 0 1 0 1 88 0 2 6 3 55 4 7777 1 333333333 6 6 3 6 1 1 777777777777777777777 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ...... ....... . .............. . . . . .. . . . . .. . .... . ......... . . . . . . ..................... ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 222222 8888888 0 00000000000000 0 0 7 0 33 7 0 7 2 22 2 0000 0 444444444 7 0 3 7 0 0 000000000000000000000 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA---AATTTCTTGAT---CANGTAAAT-----------C-GGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT----T-C-AA-----TA----TGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA---AATTTCTTGAT---CANGTAAA------------C-GGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCANGTAAACTGGTGTC----AANTTCTAT-C-ATG-TTAAACGGGTGTCAAATTCTATCGTG-TAAACGGNTGTCAANTTCTATCGAGTAAACGGATGCTATT----T-C-A------CA----TGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT------------AATTTCTTGATCCACACGTAAGTTGATGTCATTCC-GGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATT----T-CTAT-----CAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC-------ATTTCT--AT---TAGGTAAAT-----------T-TGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-G-G-GTAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA---AATTTCT--AT---CAAGTAAA------------CGGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNNN---NNNNNNNN------------N-NNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT----TGC-AATCAAGTA----TGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATTGCAAT-C-AAG----TA----TGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
Alignments
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 22222 2222222 555555555555 1 11 1 1111 111 111 1 99999999999999 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 88888 7777777 1 000000000000 0 1 0 1 88 0 2 6 3 88 0 7777 0 111 1 999 3 33333333333333 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ..... ....... . ............ . . . . .. . . . . .. . .... . ... . ... . .............. ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 55555 8888888 0 555555555555 0 0 7 0 33 7 0 7 2 55 8 0000 6 000 0 444 3 00000000000000 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT-C-AT-CAAT----TATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT----T-CAA-----TATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT-----------AATTTCTTGATCCACACGTAAGTTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCTAT-CAAT----TGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC------ATTTCT--AT---TAGGTAAAT-----------TTGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-GGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA--AATTTCT--AT---CAAGTAAAC-----------GGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNN---NNNNNNNNN-----------NNNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT----TGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATTGCAAT-CAAG----TATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
Alignments
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 22222 2222222 555555555555 1 11 1 1111 111 111 1 66666666 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 88888 7777777 1 000000000000 0 1 0 1 88 0 2 6 3 88 0 7777 0 111 1 999 3 00000000 7 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ..... ....... . ............ . . . . .. . . . . .. . .... . ... . ... . ........ . ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 55555 8888888 0 555555555555 0 0 7 0 33 7 0 7 2 55 8 0000 6 000 0 444 3 00000000 0 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---A-TCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--C---A-TCAATTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT-----------AATTTCTTGATCCACACGTAAGTTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCT---A-TCAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC------ATTTCT--AT---TAGGTAAAT-----------TTGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-GGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA--AATTTCT--AT---CAAGTAAAC-----------GGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNN---NNNNNNNNN-----------NNNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--TGCAA-TCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATTG-C---AATCAAGTATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
Alignments
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 22222 2222222 555555555555 1 11 1 1111 111 111 1 555555 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 88888 7777777 1 000000000000 0 1 0 1 88 0 2 6 3 88 0 7777 0 111 1 999 3 999999 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ..... ....... . ............ . . . . .. . . . . .. . .... . ... . ... . ...... ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 55555 8888888 0 555555555555 0 0 7 0 33 7 0 7 2 55 8 0000 6 000 0 444 3 000000 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT-----------AATTTCTTGATCCACACGTAAGTTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCT---ATCAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC------ATTTCT--AT---TAGGTAAAT-----------TTGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-GGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA--AATTTCT--AT---CAAGTAAAC-----------GGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNN---NNNNNNNNN-----------NNNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--TGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--GCA-ATCAAGTATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
Alignments
lowQualScore : 111 111 55555555555555555 5555555555 11111111 111 777777777777777777777777777777777777777 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 33333 4444444444444444444 2222 1 222222 11111 55555555 22222222 1 22222 2222222 555555555555 1 11 1 1111 111 111 1 555555 222 111 1111 888888888888888888 11 333333 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 3333333333 88888888 2 222 333333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 11111 5 0 8888888888888888888 2 1111 2 3 6 1 1 0 1 1 8 666666 1 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 9 9 33333333 5 6 6 0 44444444 1 1 1 3 1 3 1 1 0 22 8 0 88888 7777777 1 000000000000 0 1 0 1 88 0 2 6 3 88 0 7777 0 111 1 999 3 999999 333 0 0 5 444 5555 999999999999999999 1 0 0 99 5 8 11 0 3 444444 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ... ....................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ..... . . ................... . .... . . . . . . . . . ...... . ..... . . . . . .. . . ... .. ... . . . . ........ . . . . ........ . . . . . . . . . .. . . ..... ....... . ............ . . . . .. . . . . .. . .... . ... . ... . ...... ... . . . ... .... .................. . . . .. . . .. . . ...... . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 7777777777 22222222 5 333 777777777777777777777777777777777777777 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 77777 7 7 7777777777777777777 2 2222 5 3 7 0 4 6 4 4 0 444444 4 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 0 0 22222222 5 7 7 8 22222222 5 0 0 2 0 2 0 0 0 00 8 2 55555 8888888 0 555555555555 0 0 7 0 33 7 0 7 2 55 8 0000 6 000 0 444 3 000000 333 8 8 0 000 6666 666666666666666666 0 6 8 44 6 0 00 8 2 888888 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAGACC----AAATGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTT----TTTAAATTTTATTATTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GT-A--C--TTA-CATTTGAATTAATCAGTTC---TTATAAAATAACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGATGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT-----------AATTTCTTGATCCACACGTAAGTTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCT---ATCAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------ATGTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCGA--AGTATATCA--TTT--C---GTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGGTCACATTA-------TATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA--------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC------ATTTCT--AT---TAGGTAAAT-----------TTGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-GGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------ATGTTCCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGTGCCGA--ATTATATCATTTTTA-T---GTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TTTTA--T---GCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cactcTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA--AATTTCT--AT---CAAGTAAAC-----------GGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA--------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCGACCTAACAA-TGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-----TTTTTTAAAATTCA---TTTA---------TTT-A----------CAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGG--TA-CTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT--AATGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAGTTATATTA-------TATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA--------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNN---NNNNNNNNN-----------NNNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--TGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGTGTTACATCACTAACTACCAGGC-AACTGATGCCAT-GTAATCTTTTAGTGTATTTGCGCCGA--AGTATAT-ATTTTTTAT---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG------TTT----TTTA-----------------TTTA----------CAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATGAATCATTT---TGTGCAAAAAAATAT-ATGTTGCGTAAGAAGAT-AAATGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATG-TAC-TT-AGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG--TTTTTT---------------A---------TTT-A----------CAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--CCCTTA-CTTTTGAATGAATCATTT-----TGCAAAAAAATAT-ATGTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTACAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATG-TAC-TT-AGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA--------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTG-------AA-TGTTACTGCAATAGTAATGATGCTTG-----------TGGGT--TTTTTTT----TTTT---ACGA---------TTTTA----------CGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AAG-AT--C--CTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--GCA-ATCAAGTATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTTGTAGTGTAGT-AGTGTTACATCACTATCTACCAGGCAAACTGATGCCAT-GTTATC-TTAAGTGTATTTGCGCCGA--AGTATATCATTTTTA-T---GTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcagaA-TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG--TTTTTTTAAA-TTTA---TTTA----------TTTA----------CAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTAC--TTA-CTTTTGAATTAAGCATTCCTTTTTTTAAAAAA----CATGTTGTGTAAGAAGAT-AAATGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GATGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TTT----TTTA------A---------T---A----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGA--TCATTT-CTCCTAAATTGAGCATTT--------------AT----TGTT--ATA-----ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTTTTT-------------CATTGCGCTACTCTCTACGCGATAAATTAGT-CCAA-GTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTT--CAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta
blockSeqs : C TAA TGT A A T T CT A T G A . AAGGTGACTGTACTAGA T ACCTAACAA CTG T T AAAATTCATTTATTTA AGTT A T CG A GG T A G TT AT A C TC T GCTCTTTAG AGCGACATTGAACTACAG GCTC C ATGAAATACATTCT GAATATGA A C T . G A A T GCTAAAG A CCC G CTTTTTTTAAAAAAC T AAAT C A A T A T A A . CAGGCT A TAA . . C G A AA G A AAC GA GTA A G T A AGTACTG A T T . G G G T T A G A . GG G GAANN NNNN G T T T G TA A G T TA GGAA CA G TTT T TGCA GGT C ACA AAAA TTGTTGTAGTGTAGTAAG C A A T TT C CAAG A TTAATCACATCCTCTA C T T C A G TG A T A A GT G G G A AA C CC C G . T T A G GAT A AG G A T TA
blockSeqs : C . . A A T . . . T G . . . . AA TGG G T AAATTTATTTATTTA . . T TA . . T . . . . . C TC T . . . . . . . C T . A . A T . . CCC . TGTGCAAAAAAATAT C AAA C C . G T T T T . CAGGCT T AAT . . . . A T T T A . TT . A T A AGTACTG A . . . C T G T A A T C . CC C GAA AT A G . C A . . . T CC . AC G TT . GCA . C . AAA TTGTTGTAGTGTAGTAG A T A . . C TAT T TTAATCACATCCTCTA . . . A . G . T . A A TT . A . . AA C T C G . . . A G GA . . . . G .
blockSeqs : T . . C A A . . . G T . . . . . TGG G T TTTTACGATTTTA . . T CG . . T . . . . . T . T . . . . . . . C . . . . T T . . TAC . CTTTTTTTAAAAAAC C AAA C C . G T . T T . . T T . . . . C T T T A . TT . A T A A G . . . C T G . A . T C . CC C . AT N N . . AA . C A T A . TA TTTTT A T A . . T AT T . . . . T . T . . . C T G . . . . TC A T .
blockSeqs : T . . A A A . . . G T . . . . . CTG G . TTTATTTA . . T CA . . T . . . . . C . C . . . . . . . C . . . . T G . . TCA . TGCAAAAAAATAT T AAA C A . T A . A A . . A T . . . . . A G G A . GT . T . . A G . . . A G A . C T T . . AA A G A C . . . AT T . . . . T . T . . . C
blockSeqs : C . . A G A . . . T G . . TG . . TTTAATA . . . . . . A . . . . . T . T . . . . . . . . . . . . T T . . TA . AT . AA . T . A G A . TT . T . . A . . . . A G . T . . . . . T . G . .
blockSeqs : . . . C . T ATTTA . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . C . T . . . .
blockSeqCons : ** A********* CGG***** T** AAATTTTTATTTA************************** CCC** CTTTTTTTAAAAAAC**** AAA* ****** A******* ******** TTTTG************* N* CAT***
originalCons : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGACC----AA-TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG--TTTTTTT----TTTA---TTTA---------TTTTA----------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGG--C--TTA-CTTTTGAATTAAGCATTTC--TTTNTAAAAAAATATCATGTTGCGTAAGAAGATAAAATGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTACAGGCTGATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTAAGTACTGTATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTTGTAGTGTAGT-AGTGTTNCATCACTATCTACCAGGCAAACTGATGCCAA-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTT--C---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
finalCons : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTGA---------TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGGT--TTTTTTAAATTTTTATTTA--------------------------CGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCC--TTA-CTTTTGAATTAAGCATTTCTTTTTTTAAAAAAC----ATGTTGCGTAAGAAGATAAA-TGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTA------GATGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANGTTACATTA-------TATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA--------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTTTG-------------TGTTNCATCACTATCTACCAGGCAAACTGATGCCAN-GTTATC-TCAAGTATATTGGCGCCGA--AGTATATCATTTTTCAT---GTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 111 111 55555555555555555 5555555555 11111111 11111 44444444444444444444444444444444444444 1111 11 222222222 444444444444444444 1111 33333333333333 22222222 1 1 1111111 11111 22222 111 1 66666666666666 11111 222 11 444444444444444 1 22222 2222222 555555555555 1 11 1 1111 111 111 1 555555 222 111 1111 000000000000000000000000000000 11 22 8888888888888888 1 11 1 1 1 1 11 2222 1 111 1 22222 1 11
lowQualScore : 1 000 0 000 1 2 1 0 6 99 6 1 1 6 99 66666666666666666 0 8 0 4444444444 88888888 6 66666 33333333333333333333333333333333333333 2222 5 0 1 99 0 5 77 1 5 5 77 77 5 1 55 1 222222222 222222222222222222 2222 5 33333333333333 00000000 5 4 1 5 1 5 5 1 8888888 5 555 0 22222 7 55555 111 2 6 2 3 6 1 1 0 1 1 8 00000000000000 33333 8 8 8 8 8 99 3 1 999 77 777 5 1 333 55 5 6 6 0 111111111111111 1 1 1 3 1 3 1 1 0 22 8 0 88888 7777777 1 000000000000 0 1 0 1 88 0 2 6 3 88 0 7777 0 111 1 999 3 999999 333 0 0 5 444 5555 222222222222222222222222222222 1 0 0 8 1 5 8 11 0 3 22 3 8888888888888888 6 6 6 1 6 1 99 3 8 1 1 00 0 9 0 0 22 1 33 2 0 6 0 8888 3 0 7 7 6 333 3 99999 6 2 1 0 88
lowQualScore : . ... . ... . . . . . .. . . . . .. ................. . . . .......... ........ . ..... ...................................... .... . . . .. . . .. . . . .. .. . . .. . ......... .................. .... . .............. ........ . . . . . . . . ....... . ... . ..... . ..... ... . . . . . . . . . . . .............. ..... . . . . . .. . . ... .. ... . . ... .. . . . . ............... . . . . . . . . . .. . . ..... ....... . ............ . . . . .. . . . . .. . .... . ... . ... . ...... ... . . . ... .... .............................. . . . . . . . .. . . .. . ................ . . . . . . .. . . . . .. . . . . .. . .. . . . . .... . . . . . ... . ..... . . . . ..
lowQualScore : 7 000 7 000 3 3 0 4 7 22 7 0 0 7 22 00000000000000000 6 0 8 8888888888 22222222 7 77777 22222222222222222222222222222222222222 1111 7 1 4 33 7 7 99 7 7 7 99 99 7 7 77 4 999999999 111111111111111111 1111 7 66666666666666 77777777 7 3 4 7 4 7 4 4 6666666 7 111 7 55555 7 00000 777 2 7 5 3 7 0 4 6 4 4 0 00000000000000 00000 0 0 0 0 8 00 2 0 666 99 111 7 0 333 88 5 7 7 8 777777777777777 5 0 0 2 0 2 0 0 0 00 8 2 55555 8888888 0 555555555555 0 0 7 0 33 7 0 7 2 55 8 0000 6 000 0 444 3 000000 333 8 8 0 000 6666 888888888888888888888888888888 0 6 8 0 0 6 0 00 8 2 88 5 3333333333333333 7 7 7 0 7 0 22 3 0 0 2 22 0 0 0 0 00 0 00 5 2 7 7 3333 3 7 3 3 7 000 3 00000 7 0 0 7 33
consensus : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTG-A--------TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG-----TTTTTTTAAATT--TT--TA----TTT-----------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGTCCTTACTTTTGAATTAAGCATTCCTTTTTNTAAAA-A---ACAT---GTTGCGTAAGAAGATAAA-TGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTA------GAGGCTGTTGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANG---TTA-TATTATATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA---------------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTTGTT------------GT-----------GTTNCATCACTATCTACCAGGCAAACTGATGCC-ATGTTATC-TCAAGTATATTGGCGCCG--AAGTATATCATTTTTT-ATGTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
Reference ( family-8055 ) : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTNTGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGNAGGTANTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAAGTT-GAAGTAACTG-A--------TGTTGCAGCAATGATGATGGTGCTCGG-----GCTTTTGGGG-----TTTTTTTAAATT--TT--TA----TTT-----------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GGCTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TCGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCCTTACTTTTGAATTAAGCATTTCTTTTTTTAAAA-A---ACAT---GTTGCGTAAGAAGATAAA-TGATCTATCANAGTAGC-ACAGATTATGCCTGAAACGTATTCTGTACATAAATGCATACAATAAGCAAGGAACTTAAAACA-CGTATGTTTA------GA------TGACGGT--T--TGTTCCGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCNTTAGAATAACCAAGG-NAAAACGGGAGACAAATACCCTAATCCCGTGGAATTCGTNACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGANG---TTA-CATTATATGAGGTAAGC-TAATGTC-GAGTTCCATCAAGTAAA---------------CTTATGCCAAGTTCTATAGAGTAAACTAGTATCACGTTCNATCAAGTAAACTAGTNTCNGGATCCA-CANNTAAATTCATGTCGAA--AATTTCTTGAT---CANGTAAAT-----------CGGTGTCA-TTTTNATCGAATAAACANGTGT--CGTTTCTATCGAATAAGCGGGTGTCAGATTCTATCACGTAAACTAGTGTC----AATTTCTAT-C-ANG-TTAAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--T---ATCAAGTATGTTG---GGTTCTACAAATAAACGGATGTCAGATTC---CGTAAA-GAAAAACTT-TT------------GT-----------GTTNCATCACTATCTACCAGGCAAACTGATGCC-ANGTTATC-TCAAGTATATTGGCGCCG--AAGTATATCATTTTTC-ATGTCAGCCTTTA----------------TCAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TANATTGGTTGCCGATTCTT-TCTGGAAGCA--G-T-GCCAGGATNTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAATNTGT-GTGTGTTC-TCT-ANNAAATNAACTGGTGTCACTTTCCACTACGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCACGTTCTGTCTCAAA----AA-AAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGCGCACAGTTTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCAT-AATTGTTCTCAAGTTGTGTAG---AAGATTCGAAAAANTCCACGGTG--ATAGAAA
gi|1 : GTGCTGTGTACTAATACATTTAGCTTGATAAATG---AC-------GGCTACGCCAAGGGTTTTGTGTAAGACATGTCATATCAATTATAGCGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTCCAACCGAATAGTTCAC--TGCTCAATGTGATTTTCTTACA-----------------------TATAACGTCTTGGAGTTCAAAAAGTT-GAAGTAATAG-ACCAAA---TGTTGTTGCGATGGTAATGGTGTTTTGTTGTTGTTTTTGTGGCTTTTTTTTTTTAAATT--TTATTA----TTTTTTTTTTGGTTGGCTGTCCGAATCCTGTAAAAC----AGTGATTAAA-TATAAATGTACCGGTGATAAGTAGATTCA-GACTGCATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCAAACACGTGTTTA--TTGAA---------ATACAT------------------TATG----TTGG-GATG--------------TTAC--------C-GACTTTCTAGG-TT-GGAAAAC-GTGCAATATGTATAGGAAAACAAATTTCTATGAAAAA-------CTATGGAAAGTG---GTA---CTTACATTTGAATTAATCAGTTC---TTATAAAATA---ACATTAAATTGTATAAGCAGGTA--------------AGTAGC-ACAGATTGTGCCAGAAACGTATTCTGTACATAAATACATAGAATAAGCAAGGGACTTTAAATATTGTATGTTTACTTTCTGA------TGATAGT--T--TGTTCTGACTAACTGCATGATTCT-AGT-GAAATATATCTGTTCACAGAATAGTCAACA-CAAAACGGGAAACCAACCCCCTAATCCCATGGAATGCCTAGCTT--CGCTGTAT--GGTTTTCAAGTTCTCT-CG-GGTACGATGANN---NNN-NNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATGCCGAATTCCATCAAGTAAACTTGTGTCAAGTTCTATAAAGTAAACTAATATCACGTTCTATCAAGTGAACT-----------AATTTCTTGATCCACACGTAAGTTGATGTCATTCCGGTGTCG-TTTTGATCAAACATACACGTGT--CATTTCTATTGAATAAGCGGGTGTTAGATTCTATCATGTAAACAAGTGTC----AAGTTCTAT-G-ATA--TAAACGGGTGTCAAATTCTATAATG-TAAACGGGTATCAAGTTCTATCGGGTAAACGGATGCTATTTCT---ATCAATTGTGTTG---GGTTCTATAAATAAACGGATGCCAGATTC---CGT-AA-GAAAAAC-----------------AT-----------GTTCCATCACTCTCTACCAGACAAACTGATGCCAATATT-TC-TCAAGTATATTGACAGCG--AAGTATATCATTT-----CGTCAACCTGTA----------------TCAATCAAATGGGTGGTA-AT-TTGTGTCAAG-TAAATTGATTACGGATTCTT-TCCAGAAGAA--G-T-GCCTGGATTTATCAATGGTCGAGGTTTAACAAATGCAATTGAGTCAATGTGT-GT-TGTTT-TAT-ATTGAATAAACTGGTGTCACTTTCCACTACGTAAACTG-------GTCGAATAAAGTAAATTGGTGTCACCATCTGCCTCAAGGGACAA-AAAAGTGAATAAAATTTGCACCACACTCTACCGTCAAACTAGCACACAGTTATCAATTCT---T---TCAAAAAGT--TTTATTTTTCAT-AATTGTTTTCAAGTTGTGTAGATAAAGATTTGAAAAAATCCACGGTG--ATAAAAA
gi|10 : GTGTTGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---AAGGCTATACCAAGGGTTTTTTGTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTTGGTAGTTGTGTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAAGATGATGGCACCGCTC-----------------AAT
gi|11 : cttcaataaatgttcctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaGTAACTA--AGCTGTAT--GGTTATTATGTTCT---CAAGGTACTATGAGG---TCA-CATTATATAAGGTAAAC-TAGTGAC-GACTTCTATCAAGTAAA---------------CTTGTGTCAAGTTCTAAAGAGTAAACTAGCATTACGTTTTATCAAATAAACTGGCGTCAGGATCCA-CAGGTAAATTGATATC------ATTTCT--AT---TAGGTAAAT-----------TTGTGTCATTTTTTATCAGATAAACAGGTGT--CATTTCTATCAAATAAGCGGTTGTCAAATTTTATCATATAAACTGATGTC----AAGTTCTAT-C-GGG--TAAATGgtgagtttcttaga
gi|12 : GTGTTGTGCACTAATGCATTTAGCT-GGTAAATG---ATCC---AAGGCTAT-TCAAGGGTTTTTGTTAAGACATGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTAAGAAGTAAGTGGTTGGTAGTTGTGTACATAAAGATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTaatactatt
gi|13 : cttcaataaattgttctgacgagtctgaactacaaggtaggcgtgtctgaatggattgtggtgaagtatgtcagtcattctaaaaATAAATAAACGGATGTCGGGTTC---CGTAAA-GAAAAAC-----------------AT-----------GTTCCATCACTATCTACCAGGCAAACTGATGCC-AAGTTATC-TCAAGTATATTGGTGCCG--AATTATATCATTTTT--ATGTCAGTCATTA----------------TCAATCAAGTAGGTGGTA-AA-TTGTGTCAAG-TACATTGGTTGCCGATTCCT-TCTGGAAGCA--G-
gi|14 : TCTTTT-ATGCCAGCCTTTA----------------TCAATCTTGTAGGTGGTA-AA-TTGTGTCAAG-TAAATTGGTTGCTGATTCCT-TCTGAAAGCA--GAT-GCCAGGATATATCAATTGTCGAGATATAACAAATGCAATTat
gi|15 : cacTTGTACA--AACGCCTTTAGCTTGGTACATGTAAATACTGTACAGCCGTACCTAAGATACTATGTAAAACCTTTCACATTAATTATATCGT
gi|16 : tcactcattttatatgtactGTCAATTTCTATAGAGTAAACTAGTATTACGTTCAATCAAGTAAACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAA--AATTTCT--AT---CAAGTAAAC-----------GGGTGTCA-
gi|17 : TTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAG---TTA-TATTATATGAGGTAAAC-TAATGTC-AAGTTCCATCAAGTAAA---------------CTTCTGaa
gi|2 : TACCGTCTGAGATTTCAAAAAGTTTGAAGTAATCG-ACCTAACAATGTTGCAACAATGATGATGGTGCTCTG-----GCCTTTTG-------TTTTTTAAAATTCATT--TA----TTT-----------------ACAAATCCTGCAAAAC----AGTTACTAAAATATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGAATTGACGT-AAAT-CTGTATACGA-TTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GA-TTTCTAGGTTT-G-AAAAC-GTACAATG-GTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTGAAAGTGGTAC-TACTTTTGAATTAAGCATTCCTTTTTTTAAAA-A---ACAT---GTTGTGTAAGAAGAT-AA-TGGTCTATCAAAGTAGCAACATATTATGCATGAAACGTATTC-GTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GA------TGATGCC--TAATGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTC-TTAGAATAACCAAGGAAAAAACGGGAGACAAATACCCTCATCTCGTGGAATTCGTTACTAACCGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAAG---TTA-TATTATATGAGGTAA-C-TAATGTCTAAGTTCCATC-AGTAAA---------------CGTCTGTCAATTTCTATAGAGTAAACTAGTATTACG-TCAATCAAGT-AACTAGTTTCCGGATCCA-CACCTAAATTCATGTCGAANNNNNNNNNNNNN---NNNNNNNNN-----------NNNTGTCA-ATTTCTTAGAGTAAACTAGTATTACGTTTCAATC-AGTAA-CTAGTTTCCGGATCCA-CACCTAAATTCATGTCGGAAAATTTCTAT-CAAGG-TTAAACGGGTGTCCAAATGTATCATGTTAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--TGCAATCAAGTATGTTGGGTGGTTCTACAAATAAACAGGTGT-AGATTT---CAT-TA-GAAAAACTTGTTGTAGTGTAGTAAGT-----------GTTACATCACTAACTACCAGGC-AACTGATGCC-ATGTAATCTTTTAGTGTATTTGCGCCG--AAGTATAT-ATTTTTT-ATGTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AGTTTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--GTT-ACGAGAATATATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAA-GTGT-GTGTGTTC-TCTAAAAAAATCAACTGGTATCACTTT-TACTCTTTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AATAATAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAG-TTTCAATTCTAAATGTACCAAATAGTGATTTTTTTTTCATAAATTGTTCTCAAGTTGTGTAG---AA---TC-AAAAATTCCATGGTGTAATAGAAAtaaa
gi|3 : GTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATAC-AAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCACTCTCT--TGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG-----T---------TT--TT--TA----TTT-----------------ACAAATCCTGTAAAAC----AGTTACTAAA-TATGTATA----TGTGATAAGTATATAAA-GGCAGCATAATTTCA--TAAATATAAGATTA-CGCGTTTCTGATTGATGA--TGACGTAAAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA---------------TAC--------C-GA-TTTCTAGG-TT-G-AGAACAGTACAATAAGTATAGAAAAAC-AATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCCTTACTTTTGAATGAATCAT---TTTGTGCAAAA-AAATATAT---GTTGCGTAAGAAGATAAA-TGAGCTATCACAGTAGT-ACAGATTATGCCTGATACATATTC-GTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTA------CAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTTCAGTGGAAATATATCTGTCATTAGAATAACCAAGG-TAAAAC-GGAGACAAATA-CCTAATCCCTTGGAATTTGTGACT---CACTGT-TGAGATTTTTAATGTATGTAGG-GGCTCG-TGATGTACTTAGTACTGTATGAGGTAAGCTTGATGTC-GAGTTCCATCAAGTAAA---------------TTTATGCCAAGTTCTATAGAGTAAACTA-TATCAt
gi|4 : cttcaataatgtttcctgatgagatcattgtctgaactacaaagcatgtgcgtcgctgaatggattgtggtgaagtctgtcagtcattctatagGTGTTATGCATTAATGCATTTAGCTTGGTAATTG---ATCC---AAGGCTATACCAAGGGTTTTATGTAAGACGTGTCACATCAATTATATCGTTATGCAC-ATCTCTTGCTA-GAAGTAAGTGGGAAGTATTTGTTTACATAA-GATAGAATCAGTTTTCTTTCGACCGAATATTTCACATTGT--GATGTAATATGATGGCACCGCTC-----------------TATAACGTCTGGGATTTCAAAAATTT-GAAGTAACTG-----------GTTGCAGCAATGATGGTGGTGCTTGG-----GCTTTTGGGG-----TTTTTT-------------A----TTT-----------------ACAAATCCTGTAAAAC----AGTTACTAAA-TAT----GTATCTGTGATAAGTATATTAAAGGCAGCATAATTTCA--TAAATAT-AGATTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTATATACGATTTTGGCAGATGTCCGAACACGTGTTTA--TTGAA---------ATACAT------------------TCTG----TAGG-GATA--------------TTAC--------C-GACTTTCTAGG-TTGG-AAAAC-GTACAATAAGTATAGAAAAACAAATTTCTATGACAGA-------CTCTGGAAAGTG-AAGTGGCCCTTACTTTTGAATGAATCA-----TTTTGCAAAA-AAATATAT---GTTGCGTAAGAAGATAAA-TGATCTATCACAGTAGT-ACAGATTATGCCTGATACATATTCTGTACATGAATGCATTCAATAAGCAAGAAACTTAAAACA-CGTATGTTTA------CAGGCTGTTAACGGT--T--TGTTCCGATTAACAG-A-GGTTTC-AGT-GAAATATATCTGTCATTAGAATAACCAAGG-TAAAACGGGAGACAAATACCTTAATCCCTTGGAATTTGTGACTA--CACTGTAT--GATTATTAATGTATGT-AG-GGCTCGATGATGTACTTAGTACTGTATGAGGTAAGC-TGATGTC-GAGTTCCATCAAGTAAA---------------TTTATGCCAAGTTCTATAGAGTAAACTAATATCA
gi|5 : cttcaataaatgttcctgatgagatcattgtctgaactacaaagcatgtcgtgcctgaatggattgtggtgaagtctgtcagtcattctatagGTGATGTGCACTAATGCATTTAGCTTGGTAAATG---ATCC---ACGGCTACGTCAAGGGTTTTTTGTAAGACGTGTCACATCAATTATATTGTTATGCAC-ATCT--TGCTA-GAAGTAAGTGGTAGGTAGTTGTTTACGTAA-GATAGAAGCAGTTTTCTTTCGACCGAATATTTCACATTGT--AATGTAATATGATGGCGCCGTTCAAGGTGACTGTACTAGATATGCCGTCTGGAATTTCAAAACGTT-GA---GACTGAA--------TGTTACTGCAATAGTAATGATGCTTG--------T----GGG-----TTTTTTT---TT--TT--TACGATTTT-----------------ACGAATCCTGCAAAACAGTTAGTTACTCAG-TGTACA----TCTAC--------CATTCA-GGCTTGATAATTTAAGGGAAA-AC-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTATATTATATGTTGGCAGATATCCGAACACGTGTTTATCTCGAA---------ACTC-T------------------TCTGGCTCTAAACGATAATGAAATACATTCTTTACGAATATGACAGACTTTTCATG-TC-GAAAAAC-GTACAATGTGTGTAGGAAAACAAATATTTAGGACAGA-------CTCTGGAAAGTG-AA--GATCCTAGCTCTTAAATTAAGCATT
gi|6 : acttcaataaatatgcttaacgagtttattgtctgaactacaaggcatgtcgtatctgaatgggtctgcgtgaagtttgccagccattctatag----AATTTCTAT-C-AAG-T-AAACGGGTGTCAAATTGTATCATG-TAAACTGTTGTCAAATTCTATCGAGTAAACGGATGCTATT--GCA-ATCAAGTATGTTG---GGTTCTACAAATAAACAGGTGTCAGATTT---CATAA--GAAAAACTTGTT------------GTAGTGTAGTAGTGTTACATCACTATCTACCAGGCAAACTGATGCC-ATGTTATC-TTAAGTGTATTTGCGCCG--AAGTATATCATTTTT--ATGTCAGCCTCTATTAATCACATCCTCTATTAATCAAGTAGGTGGTA-AG-TTGTGTCAAG-TATATTGGTTGGCGAATCTT-TCTTGACGCA--G-TTACCAGAATCTATCAATTGTCGAGATTTAACAAATGCAATTAAGTCAAGTTGT-GT-TGTTC-TCT-AAAAAATCAACTGGTATCACTTTT-ACTATGTGGACTGGTACAAAGTCGAATTAAGTAAACTAGTGTCATGTTCTGTCTCAAA----AA-TAAAGTAAATTATAGTTGTACCACACTCTACCGTGAAAAGGGTGCACAGTTTTCAATTCTAAATGTACCAAATAGTGA--TTTTTTTCAT-AATTGTTCTCAAGTTGTGT------AGATTCAAAAATGTCCATGGTG--ATAGAAAattt
gi|7 : agaatcaga-A--------TGTTGCAACAATGATGATGGTGCTCTG-----CCTTTT--GG-----TTTTTTTAAATTTATT--TA----TTT-----------------ACAAATCCTGCAAAAC----AGTTACTAAA-TATACATGCGTCTGCGATAAGTATATTCA-GACTGTATAATTTCA--TAAATAT-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATCCTGTATACGATTTTGGCAGATGTCCGAACACATGTTTA--TTGAA---------ATACAT------------------TCTG----TAGC-GATA--------------TTAC--------C-GACTTTCTAGGTTT-G-AAAAC-GTACAATATGTATAGGAAAACAAATTTCTGTGACAGA-------CTCTGGAAAGTG-AAGTGGTACTTACTTTTGAATTAAGCATTCCTTTTTTTAAAA-A---ACAT---GTTGTGTAAGAAGATAAA-TGGTCTATCAAAGTAGC-ACATATTATGCATGAAACGTATTCTGTACATAAATGTATACAATAAGCAAGGAACATAAAACA-TGTATGTTTA------GA------TGATGCTAAT--AGTTCTGACTAACAG-A-GGTTTT-AGT-GAAATATATCTGTCCTTAGAATAACCAAGA-AAAAACGGGAGACAAATACCCTAATCTCGTGGAATTCGTTACTA--CGCTGTAT--GATTATTAAGGTCTTT-CG-GGTTCGATGAt
gi|8 : TT--TT--TA----AT------------------ACGAATCCTGCAAAAC----AGTTACTAAA-TATACATACACCTGTTATAAGTAGATTCA-GGCTGCCTAATTTTA--TAAAAAG-AGGTTACCGC-TTTCTGA--GATGA--TGACGT-AAATTCTCTGTTGGATTTTGGCAGATATCCGGACACGTGTTTATCTCGAAGCTCTTTAGATACATAGCGACATTGAACTACAGTCTG----TAGG-GATA--------------TGAC--------C-GACTTGTTAGA-TT-G-AAAAT-GTACTCTATGTACAGGAAAACAAATTTCTA-GGCAAAGCTAAAGCTTTGGAAAGTG-AAGTGATCATTTCTCCTAAATTGAGCATTTATTGTTATA----------------------------ATAAATTGAT-TATCATAGTGGC-ATTAATTATGCCTGA
gi|9 : tgtTACAA-TAA-CGGATATAAAATTCACACGTAAAAGAAAAAGTT-TT------------TC-----------ATTGCGCTACTCTCTACGCGATAAATTAGT-CC-AAGTTCT--TCACGTATATTGATGCCGTTTAGTAT-TTGTTTTTCAAGGTCAGCC-TAA----------------TC-ATTAAATATATTGTACAG-TTGTGTCAAGTTATATC-GTTGCTGATTCTTATCTGGAA-CATGG-T-G-CAGGATCTATCAAGTGTCAAAATCTAATACGCTCAATTTAGTCCATTTGTGGTATGTTTGTCT-ATCAAATAAGCTAGTGTTAATTCCCA-TACATGg
gi|9 : tTCTATCAAATAAGCTAGTGTT----AATTCCCATAC-ATGTTTAAACGGtttaaacggta