lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 111 8888888888888888888888888888888888888888888888 11111111111 111111 111111111 111111111 111111 1111111 111
lowQualScore : 5 3 77 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 0 444 6 7777777777777777777777777777777777777777777777 6 88888888888 33 3 55 111111 666666666 222222222 000000 22 2222222 66 7777 000 4
lowQualScore : . . .. ........................................................................................................................................ . . ... . .............................................. . ........... .. . .. ...... ......... ......... ...... .. ....... .. .... ... .
lowQualScore : 0 0 55 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 8 000 0 7777777777777777777777777777777777777777777777 7 00000000000 22 4 88 444444 000000000 000000000 555555 44 6666666 55 7777 000 9
consensus : TCAAGTCCGCTAAAACTNACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTAGAAGTCAGAGGAATCTGAGATTAGNTATCAACTTNTCC--TCAT-ATCGTCGAG-----------TCTAT-------TTCGAAC---------T-TCA--GAAG-CCATTTTCTCCCNT-TTTAAATG--CATTA----TTAAATGCATGTA----------------------TT-CG------GGC--GACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT------AATCGGAAT------CGA-CGAGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( gi|2 ) : TTAAGTCCCCTAAAATTTACTA--TCCT----GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTATCCACTTGGCTAACCAT-ATTGTTGAG-----------TCTAT-------TTCAAAC---------TATCA--AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTA----TTAAATCCATATA----------------------TT-TG------GGC--GACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT------AATTGGAAT------TGA-AGAGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTAGAAGTCAGAGGAATCTGAGATTAGTTATCAACTTTTCC--TCATTATTGTTGAGTAGATTTCAAATTTATCATGATATCCGAAC---------T-TCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCATACATACATAGTTGATTCGTTTATTGTGGGTT-TGTGTTCTGGC--GACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT------AATCACAAT------CAA-AGAGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCA
gi|15 : aTAAGTCCGCTAAAATTGACTA--TCCT----Gg
gi|3 : tggacAAGTATCAACTTG-------AT-GTTGTTGAG-----------TCCAT-------TTCAAAT---------T--CA--GAGG-CCATTTCCC-CCTT-TTTAAATG--CATTA----ATAAATGTATGTA----------------------CA-TG------GTT--GAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAATGGAATCAATCATGAGATAGCCAAAAACGATCGACAATCGA----cacatgcaatagtatgaaggc
gi|11 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaT-ATCTTCGAG-----------TCTAT-------TTCAAACATATCATGATATCA--GCAGACCATTTTCTTCCCTATTTAAATGCCCACTA-----TAAA
gi|7 : AAG-CCATTTTCTCCCAT-TTTAAATG-----TA----TTA-----AT-TG----------------------TT-TG------G------------------------------------------G-----AATTGAT------AATTAAAAT------CAA-CGAGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACT
gi|4 : A----------------------TT-CG------GGC--GACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA-------------AAT------CGA-AGAGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACTagtc
gi|8 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaA----------------------TTGTG------GGTATGACAAT---TT-TGA---A--AAT---------TG---G-----AATTAAT------TATTAGAAT------TTA-CAAGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTa
gi|5 : ----------------------TT-CG------GTT--GACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT------CATCAGAAT------CAA-TGA-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggttttgtt------GGC--AACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT------AATCGGAAT------GGA-CGAGCCAAAATCGACCGACAATTG------TCTT---CGACAA
gi|9 : ttaaacatatgcatacatgtagttgattccttcattgtgggtttgtgctca--GACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT------AATTAGAAT------CCG-AGAGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTccgcct
gi|13 : tATAATGA---A--AAG---------TGTCCG-----AATCTAT------AATCGGAAT------CAA-CAAGCCAAAAACAATCAACAATCa
gi|10 : ATGA---A--AAA---------TG---G-----AATCGAT------AACCGGAAT------CGA-AGACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCA
gi|12 : c------AATCAAAAT------TGA-CAATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|14 : T------CGA-AGAGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACTa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CGCAATGCGGGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAACTT
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 11 222 1 1 1 4444444 1 0000000000000000000000000000000000 11 1 111 1 111111111 111111111 1111111 111111111
lowQualScore : 4 2 1 66 000 33 0 5 2 3 3 2 1 0000000 0 2 2 0 1111111111111111111111111111111111 33 6 0 1 8 444 1 1 1 6 1 1 0 6 999999 444444444 222222222 0000000 33 3 111111111 7777 3
lowQualScore : . . . .. ... .. . . . . . . . ....... . . . . .................................. .. . . . . ... . . . . . . . . ...... ......... ......... ....... .. . ......... .... .
lowQualScore : 2 0 0 00 888 22 7 8 0 3 3 0 0 7777777 0 0 0 8 2222222222222222222222222222222222 88 0 8 0 0 222 8 2 4 5 0 7 1 0 555555 555555555 333333333 8888888 22 1 555555555 1111 6
consensus : TCAAGTCCGCTAAAATTNACTACATCCT--ACACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAACTTG-CC--CCA-TATTGTTGAGTCTATTT------------------CAAAC-TA--------TCA--GAAGACCATTTTCTCCCNT-TTTAAATG--CACTANTAAATGCATGTATTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( family-801 ) : TCAAGTCCGCTAAAACTNACTACATCCT--ACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGNTATCAACTTNTCC--TCA-TATCGTCGAGTCTATTT------------------CGAAC-T---------TCA--GAAG-CCATTTTCTCCCNT-TTTAAATG--CATTATTAAATGCATGTATTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCT--ACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGTTATCAACTTTTCC--TCATTATTGTTGAGTAGATTTCAAATTTATCATGATATCCGAAC-T---------TCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCATACAT
gi|1 : aTGTGTTCTGGCGACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT-------AATCACAAT-CAA-AG------AGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCAacatagttgattcgtttattgtgggtttgtgttctggcgacaatcaataatgaaaaatgcaatcgataatcacaatcaaagagctaaaaatgattgaaaatgatcatttgtcggcaacaatcgtttcatcag
gi|10 : atcaagtccactaaaacttactacatcctacatgacagccgcaatgcgaaagcggaggtagaagtcagaggaatctgagattagttatcaacttttcctcattattgttgagtagatttcaaatttatcatgatatccgaacttcactgaagccattttctcccaatttgaatttattaatatttgcatacatacatagttgattcgtttattgtgggttATGA---A--AAA---------TG---G-----AATCGAT-------AACCGGAAT-CGA-AG------ACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCAg
gi|11 : c-TATCTTCGAGTCTATTT------------------CAAACATATCATGATATCA--GCAGACCATTTTCTTCCCTATTTAAATGCCCACTA-TAAA
gi|12 : -------AATCAAAAT-TGA-CA------ATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|13 : ATAATGA---A--AAG---------TGTCCG-----AATCTAT-------AATCGGAAT-CAA-CA------AGCCAAAAACAATCAACAATCa
gi|14 : T-CGA-AG------AGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACT
gi|15 : AAGTCCGCTAAAATTGACT--ATCCTGCACATGagt
gi|16 : tggactCGCAATGCG-----GGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAACTTcaatagtatgaaggc
gi|2 : TTAAGTCCCCTAAAATTTACTA--TCCT------GNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNNATAATTATCCACTTGGCTAACCA-TATTGTTGAGTCTATTT------------------CAAAC-TA--------TCA--AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTATTAAATCCATATATTTGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATTGGAAT-TGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|3 : TCAAGTCCACTAAAATTGACTATATCCT--GCAC-AC-GCCACAATATGAAAG
gi|3 : ggaAAGTATCAACTTG-------A-TGTTGTTGAGTCCATTT------------------CAAA--T---------TCA--GAGG-CCATTTCC-CCCTT-TTTAAATG--CATTAATAAATGTATGTACATGGTTGAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAAT-GGAAT-CAATCATGAGATAGCCAAAAACGATCGACAATCGA----tatcaacttgatgttgttgagtccatttcaaattcagaggccatttccccctttttaaatgcattaataaatgtatgtacatggttgattcgtttaataacaatattgtttttggtcaacaatcgactaaaaaaaatggaatcaatcatgagatagccaaaaacgatcgacaatcga
gi|4 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaATTCGGGCGACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA--------------AAT-CGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACT
gi|5 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaTGTTTTCGGTTGACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT-------CATCAGAAT-CAA-TG------A-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggtttTGTGCTCAGGCAACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT-------AATCGGAAT-GGA-CG------AGCCAAAATCGACCGACA----A----TTGTC-TTCGACAACCG
gi|7 : ttaaacatatgcatacatgtagttgattccttcattgtgggttAAG-CCATTTTCTCCCAT-TTTAAATG-----TATTAATTG------TTTGGG----AATTGAT------------AA---------T----------------T-------AA----AAT-CAA-CG------AGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACTcct
gi|8 : CAATTTTGA---A--AAT---------TG---G-----AATTAAT-------TATTAGAAT-TTA-CA------AGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTagtc
gi|9 : attgtgggtatgaGACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT-------AATTAGAATCCGA--G------AGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTa
Alignments
lowQualScore : 11 1 1 1 1 1111 1 444444 1 9999999999999999999999999999999999 2 11 111111111 111111111 1111111 111111111
lowQualScore : 4 1 66 2 0 0 5 2 3 3 5555 0 000000 0 0 4444444444444444444444444444444444 0 0 1 8 11 8 222 22 1 0 6 999999 444444444 222222222 0000000 33 3 111111111 7777 3
lowQualScore : . . .. . . . . . . . .... . ...... . . .................................. . . . . .. . ... .. . . . ...... ......... ......... ....... .. . ......... .... .
lowQualScore : 2 0 00 2 3 7 8 0 3 3 0000 0 333333 0 8 0000000000000000000000000000000000 4 8 0 0 00 8 888 88 7 1 0 555555 555555555 333333333 8888888 22 1 555555555 1111 6
consensus : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC-TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( family-801 ) : TCAAGTCCGCTAAAATTNACTACATCCTACACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC-TTGCC---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CACTANTAAATGCATGTATTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGTTATCAACTTTTCC---TCATTATTGTTGAGTAGATTTCAAATT---------TATCATGATATCCGAACTTCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCATACAT
gi|1 : aTGTGTTCTGGCGACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT-------AATCACAAT-CAA-AG------AGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCAacatagttgattcgtttattgtgggtttgtgttctggcgacaatcaataatgaaaaatgcaatcgataatcacaatcaaagagctaaaaatgattgaaaatgatcatttgtcggcaacaatcgtttcatcag
gi|10 : atcaagtccactaaaacttactacatcctacatgacagccgcaatgcgaaagcggaggtagaagtcagaggaatctgagattagttatcaacttttcctcattattgttgagtagatttcaaatttatcatgatatccgaacttcactgaagccattttctcccaatttgaatttattaatatttgcatacatacatagttgattcgtttattgtgggttATGA---A--AAA---------TG---G-----AATCGAT-------AACCGGAAT-CGA-AG------ACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCAg
gi|11 : c-TATCTTCGAGTCTATTTCAAA-CATATCATGATATCA------------------GCAGACCATTTTCTTCCCTATTTAAATGCCCACTA-TAAA
gi|12 : -------AATCAAAAT-TGA-CA------ATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|13 : ATAATGA---A--AAG---------TGTCCG-----AATCTAT-------AATCGGAAT-CAA-CA------AGCCAAAAACAATCAACAATCa
gi|14 : T-CGA-AG------AGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACT
gi|15 : AAGTCCGCTAAAATTGACT--ATCCTGCACagt
gi|16 : tggactCGCAATGCG-----GGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAAC-TTatgcaatagtatgaaggc
gi|2 : TTAAGTCCCCTAAAATTTACTA--TCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNA----TAATTATCCAC-TTGGCTAACCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTATTAAATCCATATATTTGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATTGGAAT-TGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|3 : TCAAGTCCACTAAAATTGACTATATCCTGCAC-AC-GCCACAATATGAAAG
gi|3 : ggaTATCAAC-TTG-------A-TGTTGTTGAGTCCATTTCAAA-T---------T--CA------------------GAGG-CCATTTCC-CCCTT-TTTAAATG--CATTAATAAATGTATGTACATGGTTGAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAAT-GGAAT-CAATCATGAGATAGCCAAAAACGATCGACAATCGA----tatcaacttgatgttgttgagtccatttcaaattcagaggccatttccccctttttaaatgcattaataaatgtatgtacatggttgattcgtttaataacaatattgtttttggtcaacaatcgactaaaaaaaatggaatcaatcatgagatagccaaaaacgatcgacaatcga
gi|4 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaaagATTCGGGCGACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA--------------AAT-CGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACT
gi|5 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaTGTTTTCGGTTGACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT-------CATCAGAAT-CAA-TG------A-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggtttTGTGCTCAGGCAACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT-------AATCGGAAT-GGA-CG------AGCCAAAATCGACCGACA----A----TTGTC-TTCGACAACCG
gi|7 : ttaaacatatgcatacatgtagttgattccttcattgtgggttAAG-CCATTTTCTCCCAT-TTTAAATG--TATTAAT---------TGTTTGGG----AATTGAT------------AA---------T----------------T-------AA----AAT-CAA-CG------AGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACTcct
gi|8 : CAATTTTGA---A--AAT---------TG---G-----AATTAAT-------TATTAGAAT-TTA-CA------AGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTagtc
gi|9 : attgtgggtatgaGACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT-------AATTAGAATCCGA--G------AGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTa
Alignments
lowQualScore : 11 1 1 1 1 1111 11 444444 1 9999999999999999999999999999999999 2 11 111111111 111111111 1111111 111111111
lowQualScore : 4 1 66 0 0 5 2 3 3 5555 33 777777 0 0 4444444444444444444444444444444444 0 0 1 8 11 0 222 22 4 33 3 999999 444444444 000000000 0000000 11 3 111111111 7777 3
lowQualScore : . . .. . . . . . . .... .. ...... . . .................................. . . . . .. . ... .. . .. . ...... ......... ......... ....... .. . ......... .... .
lowQualScore : 2 0 00 3 7 8 0 3 3 0000 88 000000 0 8 0000000000000000000000000000000000 4 8 0 0 00 8 888 88 3 22 5 555555 555555555 000000000 8888888 77 1 555555555 1111 6
consensus : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( family-801 ) : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGTTATCAACTTTTC-C---TCATTATTGTTGAGTAGATTTCAAATT---------TATCATGATATCCGAACTTCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCAT
gi|1 : aTGTGTTCTGGCGACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT-------AATCACAAT-CAA-AG------AGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCAacatacatagttgattcgtttattgtgggtttgtgttctggcgacaatcaataatgaaaaatgcaatcgataatcacaatcaaagagctaaaaatgattgaaaatgatcatttgtcggcaacaatcgtttcatcag
gi|10 : atcaagtccactaaaacttactacatcctacatgacagccgcaatgcgaaagcggaggtagaagtcagaggaatctgagattagttatcaacttttcctcattattgttgagtagatttcaaatttatcatgatatccgaacttcactgaagccattttctcccaatttgaatttattaatatttgcatacatacatagttgattcgtttattgtgggttATGA---A--AAA---------TG---G-----AATCGAT-------AACCGGAAT-CGA-AG------ACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCAg
gi|11 : c-TATCTTCGAGTCTATTTCAAA-CATATCATGATATCA------------------GCAGACCATTTTCTTCCCTATTTAAATGCCCACT-ATAAA
gi|12 : -------AATCAAAAT-TGA-CA------ATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|13 : ATAATGA---A--AAG---------TGTCCG-----AATCTAT-------AATCGGAAT-CAA-CA------AGCCAAAAACAATCAACAATCa
gi|14 : T-CGA-AG------AGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACT
gi|15 : AAGTCCGCTAAAATTGACT--ATCCTGCACagt
gi|16 : tggactCGCAATGCG-----GGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAAC--TTatgcaatagtatgaaggc
gi|2 : TTAAGTCCCCTAAAATTTACTA--TCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNA----TAATTATCCAC--TTGGCTAACCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTATTAAATCCATATATTTGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATTGGAAT-TGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|3 : TCAAGTCCACTAAAATTGACTATATCCTGCAC-AC-GCCACAATATGAAAG
gi|3 : ggaTATCAAC--TTG-------A-TGTTGTTGAGTCCATTTCAAA-T---------T--CA------------------GAGG-CCATTTCC-CCCTT-TTTAAATG--CATTAATAAATGTATGTACATGGTTGAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAAT-GGAAT-CAATCATGAGATAGCCAAAAACGATCGACAATCGA----tatcaacttgatgttgttgagtccatttcaaattcagaggccatttccccctttttaaatgcattaataaatgtatgtacatggttgattcgtttaataacaatattgtttttggtcaacaatcgactaaaaaaaatggaatcaatcatgagatagccaaaaacgatcgacaatcga
gi|4 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaaagTTCGGGCGACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA--------------AAT-CGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACT
gi|5 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaaTGTTTTCGGTTGACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT-------CATCAGAAT-CAA-TG------A-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggtttTGTGCTCAGGCAACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT-------AATCGGAAT-GGA-CG------AGCCAAAATCGACCGACA----A----TTGTC-TTCGACAACCG
gi|7 : ttaaacatatgcatacatgtagttgattccttcattgtgggttAAG-CCATTTTCTCCCAT-TTTAAATG--TATTAAT---------TGTTTGG----------------------------------------G-----AATTGAT-------AATTAAAAT-CAA-CG------AGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACTcct
gi|8 : CAATTTTGA---A--AAT---------TG---G-----AATTAAT-------TATTAGAAT-TTA-CA------AGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTagtc
gi|9 : attgtgggtatgaGACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT-------AATTAGAATCCGA--G------AGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTa
Alignments
lowQualScore : 11 1 1 1 1 1111 11 444444 1 9999999999999999999999999999999999 2 11 111111111 111111111 1111111 111111111
lowQualScore : 4 1 66 0 0 5 2 3 3 5555 33 777777 0 0 4444444444444444444444444444444444 0 0 1 8 11 0 222 22 4 33 3 999999 444444444 000000000 0000000 11 3 111111111 7777 3
lowQualScore : . . .. . . . . . . .... .. ...... . . .................................. . . . . .. . ... .. . .. . ...... ......... ......... ....... .. . ......... .... .
lowQualScore : 2 0 00 3 7 8 0 3 3 0000 88 000000 0 8 0000000000000000000000000000000000 4 8 0 0 00 8 888 88 3 22 5 555555 555555555 000000000 8888888 77 1 555555555 1111 6
consensus : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( family-801 ) : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGTTATCAACTTTTC-C---TCATTATTGTTGAGTAGATTTCAAATT---------TATCATGATATCCGAACTTCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCAT
gi|1 : aTGTGTTCTGGCGACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT-------AATCACAAT-CAA-AG------AGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCAacatacatagttgattcgtttattgtgggtttgtgttctggcgacaatcaataatgaaaaatgcaatcgataatcacaatcaaagagctaaaaatgattgaaaatgatcatttgtcggcaacaatcgtttcatcag
gi|10 : atcaagtccactaaaacttactacatcctacatgacagccgcaatgcgaaagcggaggtagaagtcagaggaatctgagattagttatcaacttttcctcattattgttgagtagatttcaaatttatcatgatatccgaacttcactgaagccattttctcccaatttgaatttattaatatttgcatacatacatagttgattcgtttattgtgggttATGA---A--AAA---------TG---G-----AATCGAT-------AACCGGAAT-CGA-AG------ACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCAg
gi|11 : c-TATCTTCGAGTCTATTTCAAA-CATATCATGATATCA------------------GCAGACCATTTTCTTCCCTATTTAAATGCCCACT-ATAAA
gi|12 : -------AATCAAAAT-TGA-CA------ATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|13 : ATAATGA---A--AAG---------TGTCCG-----AATCTAT-------AATCGGAAT-CAA-CA------AGCCAAAAACAATCAACAATCa
gi|14 : T-CGA-AG------AGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACT
gi|15 : AAGTCCGCTAAAATTGACT--ATCCTGCACagt
gi|16 : tggactCGCAATGCG-----GGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAAC--TTatgcaatagtatgaaggc
gi|2 : TTAAGTCCCCTAAAATTTACTA--TCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNA----TAATTATCCAC--TTGGCTAACCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTATTAAATCCATATATTTGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATTGGAAT-TGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|3 : TCAAGTCCACTAAAATTGACTATATCCTGCAC-AC-GCCACAATATGAAAG
gi|3 : ggaTATCAAC--TTG-------A-TGTTGTTGAGTCCATTTCAAA-T---------T--CA------------------GAGG-CCATTTCC-CCCTT-TTTAAATG--CATTAATAAATGTATGTACATGGTTGAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAAT-GGAAT-CAATCATGAGATAGCCAAAAACGATCGACAATCGA----tatcaacttgatgttgttgagtccatttcaaattcagaggccatttccccctttttaaatgcattaataaatgtatgtacatggttgattcgtttaataacaatattgtttttggtcaacaatcgactaaaaaaaatggaatcaatcatgagatagccaaaaacgatcgacaatcga
gi|4 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaaagTTCGGGCGACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA--------------AAT-CGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACT
gi|5 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaaTGTTTTCGGTTGACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT-------CATCAGAAT-CAA-TG------A-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggtttTGTGCTCAGGCAACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT-------AATCGGAAT-GGA-CG------AGCCAAAATCGACCGACA----A----TTGTC-TTCGACAACCG
gi|7 : ttaaacatatgcatacatgtagttgattccttcattgtgggttAAG-CCATTTTCTCCCAT-TTTAAATG--TATTAAT---------TGTTTGG----------------------------------------G-----AATTGAT-------AATTAAAAT-CAA-CG------AGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACTcct
gi|8 : CAATTTTGA---A--AAT---------TG---G-----AATTAAT-------TATTAGAAT-TTA-CA------AGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTagtc
gi|9 : attgtgggtatgaGACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT-------AATTAGAATCCGA--G------AGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTa
blockSeqs : G G AT N N N N C A TGGG . GCTAAC . CATATCATGATATCA A C A CC AAA CC G AA A TATAT TATTGTTTT GTCAAC TAAAAAA CG C TCATGAGAT . G
blockSeqs : C T A . . A . . . A . . . CTATCA A C . . AAA GT T AA T ATA . TCCG . CA . AG . .
blockSeqs : A G . . . . TTCA . T . . AAA . G AA T A . G . CG . CA . .
blockSeqs : . A . . . T AA T A . G . TG . CA . .
blockSeqs : G A T A . G . CA . AG . .
blockSeqs : . . T A . G . CG . AG . .
blockSeqs : . T G . T . TA . AG . .
blockSeqs : . A . G . TA . TG . .
blockSeqs : . A . G . TA . CG . .
blockSeqs : . . G . G . CG . .
blockSeqs : . . . CA .
blockSeqs : . G
blockSeqCons : ****
originalCons : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
finalCons : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Alignments
lowQualScore : 11 1 1 1 1 1111 11 444444 1 9999999999999999999999999999999999 2 11 111111111 111111111 1111111 111111111
lowQualScore : 4 1 66 0 0 5 2 3 3 5555 33 777777 0 0 4444444444444444444444444444444444 0 0 1 8 11 0 222 22 4 33 3 999999 444444444 000000000 0000000 11 3 111111111 7777 3
lowQualScore : . . .. . . . . . . .... .. ...... . . .................................. . . . . .. . ... .. . .. . ...... ......... ......... ....... .. . ......... .... .
lowQualScore : 2 0 00 3 7 8 0 3 3 0000 88 000000 0 8 0000000000000000000000000000000000 4 8 0 0 00 8 888 88 3 22 5 555555 555555555 000000000 8888888 77 1 555555555 1111 6
consensus : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
Reference ( family-801 ) : TCAAGTCCGCTAAAATTNACTACATCCTGCACGACAGCCGCAATGCGAAAGCGGGGGTA-GAGGT-CAGAGGAATCTNGGGTTAGTTATCAAC--TTG-C---CCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------GAAGACCATTTTCTCCCNT-TTTAAATG--CATTAATAAATGCATGTGTTCGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATCGGAAT-CGA-CG------AGCCAAAAACGATCGACAATCGA----TTGTC-GGCGACAATCGTTTCATCACT
gi|1 : TCAAGTCCACTAAAACTTACTACATCCTACATGACAGCCGCAATGCGAAAGCGGAGGTA-GAAGT-CAGAGGAATCTGAGATTAGTTATCAACTTTTC-C---TCATTATTGTTGAGTAGATTTCAAATT---------TATCATGATATCCGAACTTCACTGAAG-CCATTTTCTCCCAA-TTTGAATT--TATTAATATTTGCAT
gi|1 : aTGTGTTCTGGCGACAATCAATAATGA---A--AAA---------TG---C-----AATCGAT-------AATCACAAT-CAA-AG------AGCTAAAAATGATTGAAAAT-GATCATTTGTC-GGCAACAATCGTTTCATCAacatacatagttgattcgtttattgtgggtttgtgttctggcgacaatcaataatgaaaaatgcaatcgataatcacaatcaaagagctaaaaatgattgaaaatgatcatttgtcggcaacaatcgtttcatcag
gi|10 : atcaagtccactaaaacttactacatcctacatgacagccgcaatgcgaaagcggaggtagaagtcagaggaatctgagattagttatcaacttttcctcattattgttgagtagatttcaaatttatcatgatatccgaacttcactgaagccattttctcccaatttgaatttattaatatttgcatacatacatagttgattcgtttattgtgggttATGA---A--AAA---------TG---G-----AATCGAT-------AACCGGAAT-CGA-AG------ACCCAAAGACGATCGATAATCGA----TTGTC-GACGATAATCGTTTCATCAg
gi|11 : c-TATCTTCGAGTCTATTTCAAA-CATATCATGATATCA------------------GCAGACCATTTTCTTCCCTATTTAAATGCCCACT-ATAAA
gi|12 : -------AATCAAAAT-TGA-CA------ATCCATAAACAATCGACAATCGA----TTGTC-AGCAACAATTGTTTTATCACT
gi|13 : ATAATGA---A--AAG---------TGTCCG-----AATCTAT-------AATCGGAAT-CAA-CA------AGCCAAAAACAATCAACAATCa
gi|14 : T-CGA-AG------AGCCTGGTAGGACCCACAATTGA----TCATC-AGCAACAATGATTCCATCACT
gi|15 : AAGTCCGCTAAAATTGACT--ATCCTGCACagt
gi|16 : tggactCGCAATGCG-----GGGGGTACGAGGTACAGAGGAATCTTGGGTTAGTTATCAAC--TTatgcaatagtatgaaggc
gi|2 : TTAAGTCCCCTAAAATTTACTA--TCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNA----TAATTATCCAC--TTGGCTAACCA-TATTGTTGAGTCTATTTCAAA-C---------TATCA------------------AAAGACCGTTTTCTTCCCT-TTCAAATG--CACTATTAAATCCATATATTTGGGCGACAATCGATTATGA---A--AAA---------TG---G-----AATCGAT-------AATTGGAAT-TGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTT-GGCGACAATTGTTTCATCACT
gi|3 : TCAAGTCCACTAAAATTGACTATATCCTGCAC-AC-GCCACAATATGAAAG
gi|3 : ggaTATCAAC--TTG-------A-TGTTGTTGAGTCCATTTCAAA-T---------T--CA------------------GAGG-CCATTTCC-CCCTT-TTTAAATG--CATTAATAAATGTATGTACATGGTTGAT--TCGTTTAATA---A--CAATATTGTTTTTG---GTCAACAATCGACTAAAAAAAAT-GGAAT-CAATCATGAGATAGCCAAAAACGATCGACAATCGA----tatcaacttgatgttgttgagtccatttcaaattcagaggccatttccccctttttaaatgcattaataaatgtatgtacatggttgattcgtttaataacaatattgtttttggtcaacaatcgactaaaaaaaatggaatcaatcatgagatagccaaaaacgatcgacaatcga
gi|4 : ggatcaagtccactaaaattgactatatcctgcacacgccacaatatgaaagTTCGGGCGACA-TCGATTATGA---G--AAA---------TG---G-----AATCGA--------------AAT-CGA-AG------AGCCAAAAACGATCGACAATCGA----TTGTCGGGCGACAATAGTTTCATCACT
gi|5 : cggacgccatttccacgtgtatgattaatgcgtacgtagttgattcgcgtttacatcgtatgtagttttgcctggagaaaTGTTTTCGGTTGACAACTGATTTTTA---ATAAAA---------TG---G-----AATCGAT-------CATCAGAAT-CAA-TG------A-CCTAATATGATTGACAATCGA----CTGTC-GGCGGCAATCATTTCATCACTa
gi|6 : aataaacgtttatacatggttgattcatttattgtgggtttTGTGCTCAGGCAACAATCGAT-ATGATATAT-AAA---------TG---T-----AATCGAT-------AATCGGAAT-GGA-CG------AGCCAAAATCGACCGACA----A----TTGTC-TTCGACAACCG
gi|7 : ttaaacatatgcatacatgtagttgattccttcattgtgggttAAG-CCATTTTCTCCCAT-TTTAAATG--TATTAAT---------TGTTTGG----------------------------------------G-----AATTGAT-------AATTAAAAT-CAA-CG------AGCTAAAAATG-------ATTGA----TTGTT-AGCAACAATTGTTTTTTCACTcct
gi|8 : CAATTTTGA---A--AAT---------TG---G-----AATTAAT-------TATTAGAAT-TTA-CA------AGCCAAAAATGATAGACAATCAA----ATGTC-AGCAACCGTCGTTTCATCACTagtc
gi|9 : attgtgggtatgaGACAATTGATTATGA---A--AAA---------TG---G-----AATTGAT-------AATTAGAATCCGA--G------AGCCAAAAATGACTGGCAGTCGA----TTGTC-AGCGACAGTCATTTCATCACTa