lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555 11111 22 111 222222222222222222 44444444444444444444444 1111 2222222 55555555555555555 33333333333 1 1 11 1 33 22 1 666666666666666666666666666666666666 1 1 222 1 11111 111 4444444 333333 1 222222222222222 222 444444444444444 1 1 11111 1 1 111 1 1 111 222222 1 33 22 3333333333 111 2222 1 1 1 77777777 4444444 1 6666666666666666666666666666 1 4 222 55555555 1 1 222222 1 2222 1111111 333333333333333333 11 111111 11 2 111 222
lowQualScore : 66 777 666 3 3 88888 3 3 3 3 6 3 3 88888 44 3 999 55 00000000000000000000000000000000000000000000000000000000000000000 11111 11 888 88 5 4 0 66 5 5 00 000 1 5 555555555555555555 88888888888888888888888 6 4444 99 4444444 44444444444444444 44444444444 0 1 3 88 444 0 11 11 4 0 333333333333333333333333333333333333 3 3 1 222 3 7 6 77777 777 0000000 888888 6 5 111111111111111 666 444444444444444 3 0 77777 0 0 333 0 0 777 666666 0 66 33 5555555555 666 1111 0 0 7 3 6 22222222 8888888 3 2 1111111111111111111111111111 5 0 111 44444444 7 3 0 0 99 5 6 111111 5 0 1111 7777777 4 1 222222222222222222 3 3 55 111111 44 3 777 66 5 66 5 333 5 222 7
lowQualScore : .. ... ... . . ..... . . . . . . . ..... .. . ... .. ................................................................. ..... .. ... .. . . . .. . . .. ... . . .................. ....................... . .... .. ....... ................. ........... . . . .. ... . .. .. . . .................................... . . . ... . . . ..... ... ....... ...... . . ............... ... ............... . . ..... . . ... . . ... ...... . .. .. .......... ... .... . . . . . ........ ....... . . ............................ . . ... ........ . . . . .. . . ...... . . .... ....... . . .................. . . .. ...... .. . ... .. . .. . ... . ... .
lowQualScore : 11 888 444 9 6 33333 3 3 3 3 7 3 3 33333 66 6 555 00 88888888888888888888888888888888888888888888888888888888888888888 11111 22 888 11 0 4 1 99 0 7 11 000 4 7 000000000000000000 55555555555555555555555 7 2222 22 0000000 00000000000000000 22222222222 0 8 0 33 333 7 77 77 3 7 333333333333333333333333333333333333 3 3 0 000 3 3 7 00000 777 3333333 333333 7 3 333333333333333 333 333333333333333 3 0 00000 0 0 555 0 0 555 222222 0 22 88 5555555555 222 2222 0 0 3 3 7 00000000 3333333 3 5 0000000000000000000000000000 0 0 555 00000000 3 3 0 2 44 4 7 000000 7 0 2222 6666666 4 1 111111111111111111 6 6 00 111111 66 3 111 99 0 99 0 888 0 666 3
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-T--AGA--CCGATT---TGTCTATGCC--A-AT-TTT----------------C-----GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAATAAA---AAAC-A----A---AAC-------AAACAAA----G-A--------------TAAAAA-A----CCAAAACGAAACATA--GA--TAGT-ATAT-------CGTC-----TAAAGTTCCG--TCGACGGCTAGG-ACTGNAAGTGTTAAANTCT--ATGTGCTNCGGAAGCG-CTCTNTGTGACCATGAC--CTNT-GAGA------TGTT-AA-TT-CAA-----TC-ATAAA-AGTTTN--GAATTTAA-CCTTTTCGTGTGTTGCTCGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTC------TTGTGATATAAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAAG-CACTTG-A-A-TA-CG-TAAT-T-AAAT-CTT-GG---TATTCAAACA-TACGAACG-ACTTGTCTTTGTTTTACAT-TTTT---AAAA---AAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CTAAGTTGAA--T-CAT-CGAAGGTGCTC--GGCC-AGGAG-TTAAGCGCAAANCAAA-GACNCTGGTCGAGCANGTCAATACAACGTCGTCGGAGAAACGGGAAGCACAATAAAATTAAAATAAATAACA-AT-GTTTTCAA-TTGTGTTA-TTTCTA---TT-CAA-T-TT----TG-----T-GGTCT-ATGCC-G-A-T-TTG-ACG----AGGTCTATGCC-A-TCT--TG-TG---TG--GCA-TAGACCTG--TGGT--CTA-T--ACCAAG---TTT-T--NAATTAATTTCTAAACA
Reference ( gi|2 ) : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-T--GGA--CCGATT---TGTCTATGCC--A-AT-TTT----T----------CC-----GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACATAAA---AAAC-A----A---AAC-------AAACAAA----G-A--------------TAAAAA-A----CCAAAACGAAACATA--GA--T-GT-ATAT-------TGTT-----TAAAGTTCCG--CCGAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTT-A--TT-CAA-----TC-ATAAA-AATTTG--GAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTC------TTGTGATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAAG-CACTTG-A-A-TA-CG-TAAT-T-AAAT-CTT-GG---TATTCAAACA-TACGAACG-ACTTGTCTTTTGTTTACA--TTTT---AAAA---AAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CTAAGGTGAATGT-CGTCCGAAGGTGCTC--G--C-AGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAATAA---TAAG-TAAATAACA-AT-GTTTTCAA-TTTTGTTA-TTTCTA---TT-CAA-T-TT----TG-----T-GGTCT-ATGCC-G-A-T-TTG-ATG----AGGTCTATGCC-A-TCT--TG-TG---TG--GCA-TAGACCTG--TGGT--CTA-T--A-CAAG---TTT-T--AAATTAATTTCTAAACA
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-T--AGA--CT-------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAATAAA---AAAC-AAAACA---AAC-------AAACAAA----G-A--------------TAAAAA-AAAACCCAAAACGAAACATA--GA--TAGT-ATAT---------CC-----TAAAGTTCCG--GCGACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCTT-GTGACCATGAC--CTTTAAAAA------TATTAA--TT-CAA-----TC-ATAAA-AGTTTA--GAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TT-TTTCATTTC------TTGTGATTTAAAAATAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAAG-CACTTG-ACA-TA-CG-TAAT-T-AAAT-CTT-GG---TATTCAA--A-TTCAAACG-ACTTGTCTTTGTTTTACAT-TTTT---ATAC---CATAACG--AAA----CTAG-AAAAGA-ATGTATG-CTAAGTTGAAAATACAT-CGAAGGTGCTC--GGCC-AGGGG-TTAAGCGCAAACCAAA-GACTCTGGTCGAACAA-TC-AT----CGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-T--AGA--C--------------------------------------------C-----GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAATAAA---AAAC-A----A---AAC-------AAACAAATAAAG-A--------------TGAAAA-A----CCAAAACGAAACATA--GG--TAGT-ATAT-------CNNN-----NNNNNNNNNN--NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNN--NNNN-NNNN------NGTC-AA-TT-CAA-----TC-ATAAA-AGTTTT--GAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGT-ATATAAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAAG-CACTTGAA-A-TACCGTTAATATAAAATACTT-GGGTTTATTCAAAAACTACGAATG-ACTTGTCTTTGTTTTACA--TTTTTTAAAAA---AAAAACG--AAAAAACTTAG-AAAAGG-A
gi|1 : tgtttgaaattaacggtagaccgatagACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAAT--AGA--CCGATT---TGTCT-TG------------------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAA----AA---AGAT-A----A---AACGTAGAGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAA-A----CCAAAATGAAAGATA--GA--T----AGAT-------CGTC------AAAGTCCTG--TCAA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATGAA-GCG-CTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTT-AAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTC------TTGTGATATAAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTG-A-AATA-TG-TAAT-T-AAAT-CTTTGG---TATTTCAACT-TACGAACGGACTTGTCTTT--TTTACATTTTTT---AAAA---AAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCTAAGTTTAA--T-CATCAGAAGGTGCAC--GGCC-AGGAG-TTAAGCGCAGAgatacaatgtagccac
gi|7 : tgttaaattacggataggaccgataggACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-T--AAA--A-AATTATGTGCGCATGTCTCA-ATGTCTATGGT----------CC-----GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAATAAA---AA-C-A----A---A-C-------AAACAAAG---G-A--------------T-TAAA-A----CCAAAACGAAACATATGGATCT-GTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-T--AGA--CCGA---------TAT---------------------------------------------------TCTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTA----ACAACAACATAAAGAAAAAC-A----AAACAAC-------AAACAAA----GAA--------------TAAAAACA----C--AAAC-AAACATA--GA--T-
gi|16 : gtgtttgaaattaacggtagaccgatagACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-T--ATATCCCTAGT---TGTCTACACC--A-A
gi|14 : cgatagCCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-T--AGA--CGGATT---TGACTATGCC--A-AT-TTT----CAAGATTAAGACG-----GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-aatctaagaaacaaagga
gi|10 : CGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CCGATT---TGTCTATGCC--A-AT-CTT------------------------------------------------------------CAAG-ATTTAG--A-AATTAG-CAACAACAA---AAA---AACC-A----A---A
gi|5 : gtgttgaaattaacggtttagaccggattaagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-T--AGA--CCTATT---C-TCTATGCC--ACAT--------------------CAAAAAGACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTg
gi|21 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagCAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTgt
gi|17 : AT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-T--AGA--CCAA-T---TGTCTGTGCC----AT-TT
gi|4 : G-----GT-C-TA-TC-TCA-AT-TAT-G-----A--TTGGTA-T--AGA--CCaaaaagttgaattctcagactggaattggattg
gi|12 : tgtttgaaattaacggtagaccgatagaccgagtctatgccaaatgtcacaGTCTATGCC--A-AT-TTT----G----------CC-----AAG----------T--TCTA-----TGTCAgatttgtctatgccaattttcaagattaaaaattagcaacaacaaaataaaaaacaaaacaaacaaataaagatgaaaaaccaaaacgaaacataggtagtatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcaattcaatcataaaagttttgaatttaactttttcgtgtgttgcttgcgagtattcaacacacacaactcacctttcattcatttctaaatgttgtatataaaactaaatgattaaatttcatttgttaaaattttgttgaccatccatcatagacagcaaagcacttgaaataccgttaatataaaatacttgggtttattcaaaaactacgaatgacttgtctttgttttacattttttaaaaaaaaaacgaaaaaacttagaaaaggagatacaatgtagccac
gi|15 : aaattgtgttacttttatcaatattgtagtgtg-TTAA--A-AATTAG-CAACAACAAATTAAA---AAACTAAAC-A---AAC-------AAACAAA----G-A--------------T-TAAA-A----CCAAAACGAAACATA--GA--TAGT-TTAT-------CGTT-----TAAAGTTCCG--TCGAtcttgttttggcatagtcctgaggtactataccaaattttcaaccaatttcgaacact
gi|6 : AG-CANNNN-N-N-NN-NN-NNNN-N-NNNN-NNN-NN---NATTCAAAC--T-CGAACG-ACTTGTCTTT-GATTACA--TTTT-------TTTAAAAAC---AAA----CTAG-AAAAGAGATG---G-CTTAAGTGAA-----ACACGAAGCTGCTCCGG--CCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAATAAATAACATATCGTTTTCAA-ATGTGTTA-TTTCTA---TT-CAATT-TT----TG-----TCGGTCT-ATG-C-G-A-T-TTGCATG----AGTTCT-T-CC-A--CT--TG-TG---TT--GCATTAGACCTG--TGGTCACTA-T--ACCAAGTCTTTT-T--TAATTAA--TCTAAcacta
gi|11 : TCGGAGAAACGGGA-GCACAATAA---TAAAATAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTA---TTGCGA-T-TT----TG-------------ATG---------------------GGT-TATGCC-ATTCTTGTG-TG---TG--GCA-TAGATCTG--TGGT--CTA-T--ACCAAG---TTT-T---TATTAAcac
gi|9 : AAA-AATA-AT-CTTTTAAA-ATGTGTTACTTTTTA---T--CAA-TATTGTAGTG-----T-GGTCT-ATGCC-ATATT-TTG-CCA----AGTTCTATGTC-A-TCT--T--TGTTTTG--GCA-TAGTCCTG--AGGTA-CTA-T--ACCAAA---TTT-T--CAACCAATTTC-GAACA
gi|4 : aagttaaccatagagtccaggaagacT-GTTTTTTA-TTTTGTTG-TTGCTAATTTT-TAA-T-CT----TGAAAATT-GGCAT-AGACA-A-A-T-C-----------GGTCTATCTC-A--AT--TA-TGAT-TG--GTA-TAGACCTG--TGct
gi|12 : tgtttgaaattaacggtagaccgatagaccgagtctatgccaaatgtAA-TTGTGTTA-CTTTTA---T--CAA-TATTGTAGTG-----T-GGTCT-ATGCC-A-ATT-TTG-CCA----AGTTCTATGTC-A-TCT--TGTTT---TG--GCA-TAGTCCTG--AGGTA-CTA-T--ACCAAA---TTT-T--CAACCAATTTC-GAACAaaacaaacaaataaagatgaaaaaccaaaacgaaacataggtagtatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcaattcaatcataaaagttttgaatttaactttttcgtgtgttgcttgcgagtattcaacacacacaactcacctttcattcatttctaaatgttgtatataaaactaaatgattaaatttcatttgttaaaattttgttgaccatccatcatagacagcaaagcacttgaaataccgttaatataaaatacttgggtttattcaaaaactacgaatgacttgtctttgttttacattttttaaaaaaaaaacgaaaaaacttagaaaaggagatacaatgtagccac
gi|13 : aTGTTA-TTTCTT---AT-CAC-T-TT----TG-----T-GGTCTTATGCC-G-A-T-TTG-ATG----AGGTCTATGCC-A-TTTTGTG-TG---TG--GCA-TAGACCT---TGGT--CTA-TAAA-CAAGT--TTT-T--TAATTAATTTCTAAct
gi|18 : tgA-T-TT----TG-----T-GGTCT-ATGCC-G-A-T-TTG-ATG----AGGTCTATGCC-A-TCT--TG-CG---TGTTGCA-TAGACCTcact
gi|1 : gtgtttgaagtacaataataaaagtaaat-TC----TG-----G-GGGTT-ATGCCCA-A-TATTA-TTG----ACGTCTATGCC-A-TCTTGTG-TG---TG--GCA-TAGACCT---TGTT--CTACT--ACCAAG---TTT-T---AATTAATTTTT
gi|4 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggGTCT-ATGCC-A-A-------ATGTCACAGGTCTATACCAA-TCA--TA-AT---TG--AGA-TAGACC-GATTTGT--CTA-T--G-CCAA---TTT-TCAAGATTAAcataaca
gi|5 : tgtttgaaattaacggtagaccgatagaccga----AGGTCTATGTC-T-TTT--TGATG---TG--ACA-TAGACCTA--TGGaaattagcaacaacaaaataaaaaacaaaacaaacaaataaagatgaaaaaccaaaacgaaacataggtagtatatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcaattcaatcataaaagttttgaatttaactttttcgtgtgttgcttgcgagtattcaacacacacaactcacctttcattcatttctaaatgttgtatataaaactaaatgattaaatttcatttgttaaaattttgttgaccatccatcatagacagcaaagcacttgaaataccgttaatataaaatacttgggtttattcaaaaactacgaatgacttgtctttgttttacattttttaaaaaaaaaacgaaaaaacttagaaaaggagatacaatgtagccac
gi|19 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcaggtttgtggcaaatg----AGGTCTATGTC-T-TTT--TGATC---TG--GCA-TAGACattctctatgccacatcaaaaagacagacatattgtctatgccagtttttaaaaaagtaaattgt
gi|20 : G-TG---TG--GCA-TAGACCTG--TGGT--CTA-T--A-CCAA---TTTAT--AAATCAATTTCTAAattgcctatgtcatttaaaaagtaaattctcaaactgat
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111 11111111 333333333333333333333 11111 3333333333333333 11 1111 11 1 11 11 3333333 11 22222 1 111 1 1 1 111 1 22 111 1 1 1 2 1 1 111 222222 1 2 1 111 111 1111 11 11 1111 1 1 11 2222 11 1 1 1 22 55555555 2222 111111 1 1 1 2222 1111111111 22 11 111
lowQualScore : 55 777 555 3 77777 3 3 3 3 9 3 3 77777 44 0 3 44 44 3 99999999999999999999999999999999999999999999999999999999999 11111 1 777 55 4 4 66 4 5 0 888 2 888 77777777 0 888888888888888888888 3 77777 5 77 99 6 7777777777777777 99 4 8 8 1 33 0000 55 0 5 33 1 00 0 2222222 3 33 55555 0 777 1 0 3 2 2 0 0 111 0 33 33 777 0 0 0 0 3 0 0 777 888888 0 2 0 0 8 777 8 8 999 888 444 4444 6 8 111 0 88 11 1 44 11 7777 8 8 3 0 0 3 33 1111 33 0 0 2 0 1 00 1 7 77777777 8888 6 3 6 7 0 999999 3 0 0 8 1 6 999 5 0 1111 55 5 2 2222222222 5 666 0 2 5 00 777 4 66 4 2 66 5 5 333 5 5
lowQualScore : .. ... ... . ..... . . . . . . . ..... .. . . .. .. . ........................................................... ..... . ... .. . . .. . . . ... . ... ........ . ..................... . ..... . .. .. . ................ .. . . . . .. .... .. . . .. . .. . ....... . .. ..... . ... . . . . . . . ... . .. .. ... . . . . . . . ... ...... . . . . . ... . . ... ... ... .... . . ... . .. .. . .. .. .... . . . . . . .. .... .. . . . . . .. . . ........ .... . . . . . ...... . . . . . . ... . . .... .. . . .......... . ... . . . .. ... . .. . . .. . . ... . .
lowQualScore : 55 000 888 3 77777 1 1 1 1 2 1 1 77777 22 5 3 66 66 1 55555555555555555555555555555555555555555555555555555555555 11111 1 888 22 4 0 11 4 0 1 888 0 888 22222222 1 111111111111111111111 9 11111 7 99 88 7 3333333333333333 22 3 0 8 0 88 0000 22 8 8 88 0 88 8 0000000 2 88 00000 0 555 0 0 2 5 0 0 0 000 0 88 55 555 0 0 0 0 2 0 0 555 888888 0 0 0 0 0 000 0 0 000 222 000 8888 0 0 888 8 88 00 4 88 00 0000 0 0 2 0 0 2 88 2222 22 0 0 5 0 0 77 0 3 33333333 7777 7 2 7 3 7 000000 2 0 0 0 4 7 333 7 0 2222 11 0 5 8888888888 0 111 1 5 0 66 888 4 11 4 5 99 0 0 888 9 0
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATAT-AAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAA-ATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT-AG----TCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAATAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-A-T----TT-G-ACGAGGTCTATGCCA-TCTTGTGTG---T-G--GCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Reference ( family-7928 ) : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGNAAGTGTTAAANTCT--ATGTGCTNCGGAAGC-GCTCTNTGTGACCATGAC--CTNT-GAGA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTCGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATAT-AAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTG-A-ATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAANCAAA-GACNCTGGTCGAGCANGTCAATACAACGTCGTCGGAGAAACGGGAAGCACAATAAAATTAAAATAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-A-T----TT-G-ACGAGGTCTATGCCA-TCT--TGTG---T-G--GCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
gi|1 : ACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAATAG--A--CCGATT---------TGTCT---TG---------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAAAAAGATAAAACGT---A----G---AGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAAA----CCA-AAATGAAAGATA--GATA-G----ATC-G-------TC-----AAAGTCCTGTC--AA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATG-AAGC-GCTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTTAAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTCT---TG-TG-ATAT-AAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTGAA-ATA-TG-TAAT-T-AAAT-CTTTGG---TATTTCAACT-TACGAACGGACTTGTCTT--TTTTACATTTTTT--AAAAAAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCT-AAGTTT--AA--T-CAT-CAGAAGGTGCAC-GGCCAGGAG-TTAAGCGCAGA
gi|1 : tgttaaattacggataggaccgatagg-TC----TGG-GGGTT-ATGCCCA-A-TATTATT-G-ACG---TCTATGCCA-TCTTGTGTG---T-G--GCA-TAGACCT-TGTT--CTACT-ACCAAG---TTTT-AATTAATTTTTtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|10 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggCGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CC------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TCTTCAAG-ATTTAG--A-AATTAG-CAACAACAA------AAAAACC---A----A---Acataaca
gi|11 : gtgttgaaattaacggtttagaccggattaagTCGGAGAAACGGGA-GCACAATAA---TAAAATAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTATTGCGA-T-TT----TG--------ATG---------------------GGT-TATGCCATTCTTGTGTG---T-G--GCA-TAGATCTGTGGT--CTA-T-ACCAAG---TTTTT-ATTAAg
gi|12 : -AATTGTGTTA-CTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-A-A-T----TTTG-CCAAGTTCTATGTCA-TCT--TGTT---TTG--GCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
gi|13 : aTGTGTTA-TTTCTTAT-CAC-T-TT----TGT-GGTCTTATGCC-G-A-T----TT-G-ATGAGGTCTATGCCA-TTTTGTGTG---T-G--GCA-TAGACCT-TGGT--CTA-TAAACAAGT--TTTTTAATTAATTTCTAAct
gi|14 : CCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CGGATT---------TGACT--ATGCCA-ATT-TT--CAAGATTAAGACGGAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-cact
gi|15 : -TTAA--A-AATTAG-CAACAACAAAT---TAAAAAACTAAAC---A---AACAAACAAA----G-A--------------TTAAAA-----CCA-AAACGAAACATA--GATA-GT-TTATC-G-------TT----TAAAGTTCCGTC--GAC
gi|16 : ACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-TAT--ATCCCTAGT---------TGTCT--ACACCA-Aacta
gi|17 : cgatagAT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-TAG--A--CCAA-T---------TGTCT--GTGCC--ATT-Taatctaagaaacaaagga
gi|18 : A-T-TT----TGT-GGTCT-ATGCC-G-A-T----TT-G-ATGAGGTCTATGCCA-TCT--TGCG---T-GTTGCA-TAGACCTaaaaagttgaattctcagactggaattggattg
gi|19 : gtgtttgaagtacaataataaaagtaaat-----GT-C-TA-TG-CCAGAT-CAA-A-----A--A-GACA-TAG--A--CCTA-T---------TGCCT--ATGTC--ATT-T
gi|2 : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TGG--A--CCGATT---------TGTCT--ATGCCA-ATT-TTTCC------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GAT--GT-ATATT-G-------TT----TAAAGTTCCGCC--GAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTTA-TT--CAA-----TC-ATAAAA---ATTTGGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTCT---TG-TG-ATAT-AAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAA-GCACTTG-A-ATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTTGTTTACA--TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGGTG--AATGT-CGTCC-GAAGGTGCTC-G--CAGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAAT--AAT--AAGTAAATAACA-AT-GTTTTC-AATTTTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-A-T----TT-G-ATGAGGTCTATGCCA-TCT--TGTG---T-G--GCA-TAGACCTGTGGT--CTA-T-A-CAAG---TTTTAAATTAATTTCTAAACAaaaaagtaaattctcaaactgat
gi|20 : GTG---T-G--GCA-TAGACCTGTGGT--CTA-T-ACCAAT---TTATAAATCAATTTCTAA
gi|21 : CAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTca
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CTGATT----------------------------------------------------------TGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---AAAACA---AACAAACAAA----G-A--------------TAAAAAAAAACCCA-AAACGAAACATA--GATA-GT-ATATC----------C----TAAAGTTCCGGC--GACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCT-TGTGACCATGAC--CTTTAAAAA------TATTAATT--CAA-----TC-ATAAAA---GTTTAGAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TTT-TTCATTTCT---TG-TG-ATTTAAAAA-TAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAA-GCACTTG-ACATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAA--A-TTCAAAC-GACTTGTCTTTGTTTTACA-TTTTT--ATACCATAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTGAAAA--TACAT-C-GAAGGTGCTC-GGCCAGGGG-TTAAGCGCAAACCAAA-GACTCTGGTCGAA-----CAAT-CATCGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C---------------------------------------------------AAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAATAAAG-A--------------TGAAAAA----CCA-AAACGAAACATA--GGTA-GT-ATATC-N-------NN----NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNN-NNNN-------GTCAATT--CAA-----TC-ATAAAA---GTTTTGAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGTATAT-AAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAA-GCACTTGAA-ATACCGTTAATATAAAATAC-TTGGGTTTATTCAAAAACTACGAAT-GACTTGTCTTTGTTTTACA-TTTTTTAAAAAAAAAACG--AAAAAACTTAG-AAAAGG-A
gi|5 : tgtttgaaattaacggtagaccgatagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-TAG--A--CCTATT---------C-TCT--ATGCCACA----T--CAAAAA-------GACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTgatacaatgtagccac
gi|6 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagA-GCANNNN-N-NNN-NN-NNNN-N-NNNN-N-NNNN---NATTCAAAC--T-CGAAC-GACTTGTCTTTGATT-ACA-TTTTT--TTAAAAA--C---AAA----CTAG-AAAAGAGATG---G-CTTAAGT-G--AA--A-CA--C-GAAGCTGCTCCGGCCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAATAAATAACATATCGTTTTC-AAATGTGTTA-TTTCTATT-CAATT-TT----TGTCGGTCT-ATG-C-G-A-T----TT-GCATGAGTTCT-T-CCA--CT--TGTG---T-T--GCATTAGACCTGTGGTCACTA-T-ACCAAGTCTTTTTTAATTAA--TCTAAgt
gi|7 : ACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-TAA--A--A-AATTATGTGCGCATGTCTCAATGTCT-ATGGTC--C------------GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAA---TAAAAA-C---A----A---A-CAAACAAAG---G-A--------------T-TAAAA----CCA-AAACGAAACATATGGATCTGTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAcac
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGAT----------------------------------------------AT----------T---CTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTAA-CAACAACATAA---AGAAAAAC---A----AAACAACAAACAAA----GAA--------------TAAAAA------CACAAAC-AAACATA--GAT
gi|9 : gtgtttgaaattaacggtagaccgatagAAGACAAA-AATA-AT-CTTTTA-AAATGTGTTACTTTTTA-T-CAA-TATTGTAGTGT-GGTCT-ATGCC-ATATT----TT-G-CCAAGTTCTATGTCA-TCT--T-TGTTTT-G--GCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111 11111111 333333333333333333333 11111 3333333333333333 11 11 1 11 1 3333333 11 22222 1 111 1 1 1 111 1 22 111 1 1 2 1 1 1 111 222222 1 2 1 1 1 1 111 1 1 111 1111 11 11 1111 1 1 11 2222 11 1 1 1 22 6666666666666666 222222 1 1 11 1 2222 1111 1 11 111
lowQualScore : 55 777 555 3 77777 3 3 3 3 9 3 3 77777 44 0 3 44 44 3 99999999999999999999999999999999999999999999999999999999999 11111 1 777 55 4 4 66 4 5 0 888 2 888 77777777 0 888888888888888888888 3 77777 5 77 99 6 7777777777777777 99 4 8 7 33 0 9 55 0 0 5 33 0 2222222 3 33 55555 0 777 1 0 3 2 0 0 111 0 33 33 777 0 0 0 0 3 0 0 777 888888 0 2 0 0 0 3 0 0 111 0 0 777 4444 6 8 111 0 88 11 1 44 11 7777 8 8 3 0 0 3 33 1111 33 0 0 2 0 00 7 6666666666666666 6 3 2 3 555555 8 0 0 0 8 1 6 44 5 0 1111 55 5 2 999 0000 0 666 0 2 5 5 6 4 2 66 5 5 333 5 5
lowQualScore : .. ... ... . ..... . . . . . . . ..... .. . . .. .. . ........................................................... ..... . ... .. . . .. . . . ... . ... ........ . ..................... . ..... . .. .. . ................ .. . . . .. . . .. . . . .. . ....... . .. ..... . ... . . . . . . ... . .. .. ... . . . . . . . ... ...... . . . . . . . . ... . . ... .... . . ... . .. .. . .. .. .... . . . . . . .. .... .. . . . . .. . ................ . . . . ...... . . . . . . . .. . . .... .. . . ... .... . ... . . . . . . . .. . . ... . .
lowQualScore : 55 000 888 3 77777 1 1 1 1 2 1 1 77777 22 5 3 66 66 1 55555555555555555555555555555555555555555555555555555555555 11111 1 888 22 4 0 11 4 0 1 888 0 888 22222222 1 111111111111111111111 9 11111 7 99 88 7 3333333333333333 22 3 0 6 88 8 2 22 8 8 8 88 0 0000000 2 88 00000 0 555 0 0 2 5 0 0 000 0 88 55 555 0 0 0 0 2 0 0 555 888888 0 0 0 0 0 2 0 0 000 0 0 555 8888 0 0 888 8 88 00 4 88 00 0000 0 0 2 0 0 2 88 2222 22 0 0 5 0 77 3 0000000000000000 7 2 5 2 000000 0 8 0 0 0 4 7 00 7 0 2222 11 0 5 111 6666 0 111 1 5 0 0 7 4 5 99 0 0 888 9 0
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT----G-GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Reference ( family-7928 ) : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATAT-AAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT----A-GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
gi|1 : ACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAATAG--A--CCGATT---------TGTCT---TG---------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAAAAAGATAAAACGT---A----G---AGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAAA----CCA-AAATGAAAGATA--GATA-G----ATC-G-------TC-----AAAGTCCTGTC--AA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATG-AAGC-GCTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTTAAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTCT---TG-TG-ATAT-AAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTGAAATA-TG-TAAT-T-AAAT-CTTTGG---TATTTCAACT-TACGAACGGACTTGTCTT--TTTTACATTTTTT--AAAAAAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCT-AAGTTT--AA--T-CAT-CAGAAGGTGCAC-GGCCAGGAG-TTAAGCGCAGA
gi|1 : tgttaaattacggataggaccgatagg-TC----TGG-GGGTT-ATGCCCA-ATATTATT-G-ACG---TCTATGCCA-TCTT-GTGTGTGGCA-TAGACCT-TGTT--CTACT-ACCAAG---TTTT-AATTAATTTTTtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|10 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggCGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CC------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TCTTCAAG-ATTTAG--A-AATTAG-CAACAACAA------AAAAACC---A----A---Acataaca
gi|11 : gtgttgaaattaacggtttagaccggattaagTCGGAGAAACGGGA-GCACAATAA---TAAAA-TAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTATTGCGA-T-TT----TG--------ATG--------------------GGT-TATGCCATTCTT-GTGTGTGGCA-TAGATCTGTGGT--CTA-T-ACCAAG---TTTTT-ATTAAg
gi|12 : -AATTGTGTTA-CTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-A-AT----TTTG-CCAAGTTCTATGTCA-TCTT-GTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
gi|13 : aTGTGTTA-TTTCTTAT-CAC-T-TT----TGT-GGTCTTATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TTTT-GTGTGTGGCA-TAGACCT-TGGT--CTA-TAAACAAGT--TTTTTAATTAATTTCTAAct
gi|14 : CCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CGGATT---------TGACT--ATGCCA-ATT-TT--CAAGATTAAGACGGAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-cact
gi|15 : -TTAA--A-AATTAG-CAACAACAAAT---TAAAAAACTAAAC---A---AACAAACAAA----G-A--------------TTAAAA-----CCA-AAACGAAACATA--GATA-GT-TTATC-G-------TT----TAAAGTTCCGTC--GAC
gi|16 : ACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-TAT--ATCCCTAGT---------TGTCT--ACACCA-Aacta
gi|17 : cgatagAT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-TAG--A--CCAA-T---------TGTCT--GTGCC--ATT-Taatctaagaaacaaagga
gi|18 : GAAGTACAATAA---TAAAAGTAAATAaaaaagttgaattctcagactggaattggattg
gi|18 : gtgtttA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCTT-GCGTGTTGCA-TAGACCTttttgtggtctatgccgatttgatgaggtctatgccatcttgcgtgttgcatagacct
gi|19 : gtgtttgaagtacaataataaaagtaaat-----GT-C-TA-TG-CCAGAT-CAA-A-----A--A-GACA-TAG--A--CCTA-T---------TGCCT--ATGTC--ATT-T
gi|2 : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TGG--A--CCGATT---------TGTCT--ATGCCA-ATT-TTTCC------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GAT--GT-ATATT-G-------TT----TAAAGTTCCGCC--GAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTT-ATT--CAA-----TC-ATAAAA---ATTTGGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTCT---TG-TG-ATATAAAAA-TAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAA-GCACTTG-AATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTTGTTTACA--TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGGTG--AATGT-CGTCC-GAAGGTGCTC-G--CAGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAAT--AAT--AAG-TAAATAACA-AT-GTTTTC-AATTTTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCT---TGTGTGGCA-TAGACCTGTGGT--CTA-T-A-CAAG---TTTTAAATTAATTTCTAAACAaaaaagtaaattctcaaactgat
gi|20 : GTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAT---TTATAAATCAATTTCTAA
gi|21 : CAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTca
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CTGATT----------------------------------------------------------TGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---AAAACA---AACAAACAAA----G-A--------------TAAAAAAAAACCCA-AAACGAAACATA--GATA-GT-ATATC----------C----TAAAGTTCCGGC--GACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCT-TGTGACCATGAC--CTTTAAAAA------TATTAATT--CAA-----TC-ATAAAA---GTTTAGAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TTT-TTCATTTCT---TG-TG-ATTTAAAAA-TAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAA-GCACTTGACATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAA--A-TTCAAAC-GACTTGTCTTTGTTTTACA-TTTTT--ATACCATAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTGAAAA--TACAT-C-GAAGGTGCTC-GGCCAGGGG-TTAAGCGCAAACCAAA-GACTCTGGTC----G-AACAAT-CATCGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C---------------------------------------------------AAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAATAAAG-A--------------TGAAAAA----CCA-AAACGAAACATA--GGTA-GT-ATATC-N-------NN----NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNN-NNNN-------GTCAATT--CAA-----TC-ATAAAA---GTTTTGAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGTATAT-AAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAA-GCACTTGAAATACCGTTAATATAAAATAC-TTGGGTTTATTCAAAAACTACGAAT-GACTTGTCTTTGTTTTACA-TTTTTTAAAAAAAAAACG--AAAAAACTTAG-AAAAGG-A
gi|5 : tgtttgaaattaacggtagaccgatagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-TAG--A--CCTATT---------C-TCT--ATGCCACA----T--CAAAAA-------GACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTgatacaatgtagccac
gi|6 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagATTCAAAC--T-CGAAC-GACTTGTCTTTGATT-ACA-TTTTT--TTAAAAA--C---AAA----CTAG-AAAAGAGATG---G-CTTAAGT-G--AA--A-CA--C-GAAGCTGCTCCGGCCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAA-TAAATAACATATCGTTTTC-AAATGTGTTA-TTTCTATT-CAATT-TT----TGTCGGTCT-ATG-C-G-AT----TT-GCATGAGTTCT-T-CCA--CTT-GTGT-T-GCATTAGACCTGTGGTCACTA-T-ACCAAGTCTTTTTTAATTAA--TCTAAgt
gi|7 : agcannnnnnnnnnnnnnnnnnnnnnnnnACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-TAA--A--A-AATTATGTGCGCATGTCTCAATGTCT-ATGGTC--C------------GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAA---TAAAAA-C---A----A---A-CAAACAAAG---G-A--------------T-TAAAA----CCA-AAACGAAACATATGGATCTGTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAcac
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGAT----------------------------------------------AT----------T---CTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTAA-CAACAACATAA---AGAAAAAC---A----AAACAACAAACAAA----GAA--------------TAAAAA------CACAAAC-AAACATA--GAT
gi|9 : gtgtttgaaattaacggtagaccgatagAAGA-CAAA-AATA-AT-CTTTTA-AAATGTGTTACTTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-ATAT----TTTG-CCAAGTTCTATGTCA-TCTTTGTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111 11111111 333333333333333333333 11111 3333333333333333 11 11 1 11 1 3333333 11 22222 1 111 1 1 1 111 1 22 111 1 1 1 1 111 222222 1 2 1 1 1 1 111 1 1 111 1111 11 11 1111 1 1 11 2222 11 1 1 1 22 6666666666666666 222222 1 1 11 1 2222 1111 1 11 111
lowQualScore : 55 777 555 3 77777 3 3 3 3 9 3 3 77777 44 0 3 44 44 3 99999999999999999999999999999999999999999999999999999999999 11111 1 777 55 4 4 66 4 5 0 888 2 888 77777777 0 888888888888888888888 3 77777 5 77 99 6 7777777777777777 99 4 8 7 33 0 9 55 0 0 5 33 0 2222222 3 33 55555 0 777 1 0 3 2 0 0 111 0 33 33 777 0 0 9 3 0 0 777 888888 0 2 0 0 0 3 0 0 111 0 0 777 4444 6 8 111 0 88 11 1 44 11 7777 8 8 3 0 0 3 33 1111 33 0 0 2 0 00 7 0000000000000000 6 3 2 3 555555 8 0 0 0 8 1 6 44 5 0 1111 55 5 2 999 0000 0 666 0 2 5 5 6 4 2 66 5 5 333 5 5
lowQualScore : .. ... ... . ..... . . . . . . . ..... .. . . .. .. . ........................................................... ..... . ... .. . . .. . . . ... . ... ........ . ..................... . ..... . .. .. . ................ .. . . . .. . . .. . . . .. . ....... . .. ..... . ... . . . . . . ... . .. .. ... . . . . . . ... ...... . . . . . . . . ... . . ... .... . . ... . .. .. . .. .. .... . . . . . . .. .... .. . . . . .. . ................ . . . . ...... . . . . . . . .. . . .... .. . . ... .... . ... . . . . . . . .. . . ... . .
lowQualScore : 55 000 888 3 77777 1 1 1 1 2 1 1 77777 22 5 3 66 66 1 55555555555555555555555555555555555555555555555555555555555 11111 1 888 22 4 0 11 4 0 1 888 0 888 22222222 1 111111111111111111111 9 11111 7 99 88 7 3333333333333333 22 3 0 6 88 8 2 22 8 8 8 88 0 0000000 2 88 00000 0 555 0 0 2 5 0 0 000 0 88 55 555 0 0 2 2 0 0 555 888888 0 0 0 0 0 2 0 0 000 0 0 555 8888 0 0 888 8 88 00 4 88 00 0000 0 0 2 0 0 2 88 2222 22 0 0 5 0 77 3 3333333333333333 7 2 5 2 000000 0 8 0 0 0 4 7 00 7 0 2222 11 0 5 111 6666 0 111 1 5 0 0 7 4 5 99 0 0 888 9 0
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Reference ( family-7928 ) : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
gi|1 : ACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAATAG--A--CCGATT---------TGTCT---TG---------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAAAAAGATAAAACGT---A----G---AGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAAA----CCA-AAATGAAAGATA--GATA-G----ATC-G-------TC-----AAAGTCCTGTC--AA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATG-AAGC-GCTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTTAAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTCT---TG-TG-ATATAAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTGAAATA-TG-TAAT-T-AAAT-CTTTGG---TATTTCAACT-TACGAACGGACTTGTCTT--TTTTACATTTTTT--AAAAAAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCT-AAGTTT--AA--T-CAT-CAGAAGGTGCAC-GGCCAGGAG-TTAAGCGCAGA
gi|1 : tgttaaattacggataggaccgatagg-TC----TGG-GGGTT-ATGCCCA-ATATTATT-G-ACG---TCTATGCCA-TCTT-GTGTGTGGCA-TAGACCT-TGTT--CTACT-ACCAAG---TTTT-AATTAATTTTTtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|10 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggCGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CC------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TCTTCAAG-ATTTAG--A-AATTAG-CAACAACAA------AAAAACC---A----A---Acataaca
gi|11 : gtgttgaaattaacggtttagaccggattaagTCGGAGAAACGGGA-GCACAATAA---TAAAA-TAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTATTGCGA-T-TT----TG--------ATG--------------------GGT-TATGCCATTCTT-GTGTGTGGCA-TAGATCTGTGGT--CTA-T-ACCAAG---TTTTT-ATTAAg
gi|12 : -AATTGTGTTA-CTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-A-AT----TTTG-CCAAGTTCTATGTCA-TCTT-GTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
gi|13 : aTGTGTTA-TTTCTTAT-CAC-T-TT----TGT-GGTCTTATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TTTT-GTGTGTGGCA-TAGACCT-TGGT--CTA-TAAACAAGT--TTTTTAATTAATTTCTAAct
gi|14 : CCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CGGATT---------TGACT--ATGCCA-ATT-TT--CAAGATTAAGACGGAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-cact
gi|15 : -TTAA--A-AATTAG-CAACAACAAAT---TAAAAAACTAAAC---A---AACAAACAAA----G-A--------------TTAAAA-----CCA-AAACGAAACATA--GATA-GT-TTATC-G-------TT----TAAAGTTCCGTC--GAC
gi|16 : ACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-TAT--ATCCCTAGT---------TGTCT--ACACCA-Aacta
gi|17 : cgatagAT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-TAG--A--CCAA-T---------TGTCT--GTGCC--ATT-Taatctaagaaacaaagga
gi|18 : GAAGTACAATAA---TAAAAGTAAATAaaaaagttgaattctcagactggaattggattg
gi|18 : gtgtttA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCTT-GCGTGTTGCA-TAGACCTttttgtggtctatgccgatttgatgaggtctatgccatcttgcgtgttgcatagacct
gi|19 : gtgtttgaagtacaataataaaagtaaat-----GT-C-TA-TG-CCAGAT-CAA-A-----A--A-GACA-TAG--A--CCTA-T---------TGCCT--ATGTC--ATT-T
gi|2 : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TGG--A--CCGATT---------TGTCT--ATGCCA-ATT-TTTCC------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GAT--GT-ATATT-G-------TT----TAAAGTTCCGCC--GAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTTA-TT--CAA-----TC-ATAAAA---ATTTGGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAA-GCACTTG-AATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTTGTTTACA--TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGGTG--AATGT-CGTCC-GAAGGTGCTC-G--CAGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAAT--AAT--AAG-TAAATAACA-AT-GTTTTC-AATTTTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCT---TGTGTGGCA-TAGACCTGTGGT--CTA-T-A-CAAG---TTTTAAATTAATTTCTAAACAaaaaagtaaattctcaaactgat
gi|20 : GTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAT---TTATAAATCAATTTCTAA
gi|21 : CAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTca
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CTGATT----------------------------------------------------------TGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---AAAACA---AACAAACAAA----G-A--------------TAAAAAAAAACCCA-AAACGAAACATA--GATA-GT-ATATC----------C----TAAAGTTCCGGC--GACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCT-TGTGACCATGAC--CTTTAAAAA------TATTAATT--CAA-----TC-ATAAAA---GTTTAGAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TTT-TTCATTTCT---TG-TG-ATTTAAAAATAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAA-GCACTTGACATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAA--A-TTCAAAC-GACTTGTCTTTGTTTTACA-TTTTT--ATACCATAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTGAAAA--TACAT-C-GAAGGTGCTC-GGCCAGGGG-TTAAGCGCAAACCAAA-GACTCTGGTC--G---AACAAT-CATCGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C---------------------------------------------------AAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAATAAAG-A--------------TGAAAAA----CCA-AAACGAAACATA--GGTA-GT-ATATC-N-------NN----NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNN-NNNN-------GTCAATT--CAA-----TC-ATAAAA---GTTTTGAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGTATATAAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAA-GCACTTGAAATACCGTTAATATAAAATAC-TTGGGTTTATTCAAAAACTACGAAT-GACTTGTCTTTGTTTTACA-TTTTTTAAAAAAAAAACG--AAAAAACTTAG-AAAAGG-A
gi|5 : tgtttgaaattaacggtagaccgatagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-TAG--A--CCTATT---------C-TCT--ATGCCACA----T--CAAAAA-------GACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTgatacaatgtagccac
gi|6 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagATTCAAAC--T-CGAAC-GACTTGTCTTTGATT-ACA-TTTTT--TTAAAAA--C---AAA----CTAG-AAAAGAGATG---G-CTTAAGT-G--AA--A-CA--C-GAAGCTGCTCCGGCCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAA-TAAATAACATATCGTTTTC-AAATGTGTTA-TTTCTATT-CAATT-TT----TGTCGGTCT-ATG-C-G-AT----TT-GCATGAGTTCT-T-CCA--CTT-GTGT-T-GCATTAGACCTGTGGTCACTA-T-ACCAAGTCTTTTTTAATTAA--TCTAAgt
gi|7 : agcannnnnnnnnnnnnnnnnnnnnnnnnACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-TAA--A--A-AATTATGTGCGCATGTCTCAATGTCT-ATGGTC--C------------GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAA---TAAAAA-C---A----A---A-CAAACAAAG---G-A--------------T-TAAAA----CCA-AAACGAAACATATGGATCTGTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAcac
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGAT----------------------------------------------AT----------T---CTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTAA-CAACAACATAA---AGAAAAAC---A----AAACAACAAACAAA----GAA--------------TAAAAA------CACAAAC-AAACATA--GAT
gi|9 : gtgtttgaaattaacggtagaccgatagAAGA-CAAA-AATA-AT-CTTTTA-AAATGTGTTACTTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-ATAT----TTTG-CCAAGTTCTATGTCA-TCTTTGTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111 11111111 333333333333333333333 11111 3333333333333333 11 11 1 11 1 3333333 11 22222 1 111 1 1 1 111 1 22 111 1 1 1 1 111 222222 1 2 1 1 1 1 111 1 1 111 1111 11 11 1111 1 1 11 2222 11 1 1 1 22 6666666666666666 222222 1 1 11 1 2222 1111 1 11 111
lowQualScore : 55 777 555 3 77777 3 3 3 3 9 3 3 77777 44 0 3 44 44 3 99999999999999999999999999999999999999999999999999999999999 11111 1 777 55 4 4 66 4 5 0 888 2 888 77777777 0 888888888888888888888 3 77777 5 77 99 6 7777777777777777 99 4 8 7 33 0 9 55 0 0 5 33 0 2222222 3 33 55555 0 777 1 0 3 2 0 0 111 0 33 33 777 0 0 9 3 0 0 777 888888 0 2 0 0 0 3 0 0 111 0 0 777 4444 6 8 111 0 88 11 1 44 11 7777 8 8 3 0 0 3 33 1111 33 0 0 2 0 00 7 0000000000000000 6 3 2 3 555555 8 0 0 0 8 1 6 44 5 0 1111 55 5 2 999 0000 0 666 0 2 5 5 6 4 2 66 5 5 333 5 5
lowQualScore : .. ... ... . ..... . . . . . . . ..... .. . . .. .. . ........................................................... ..... . ... .. . . .. . . . ... . ... ........ . ..................... . ..... . .. .. . ................ .. . . . .. . . .. . . . .. . ....... . .. ..... . ... . . . . . . ... . .. .. ... . . . . . . ... ...... . . . . . . . . ... . . ... .... . . ... . .. .. . .. .. .... . . . . . . .. .... .. . . . . .. . ................ . . . . ...... . . . . . . . .. . . .... .. . . ... .... . ... . . . . . . . .. . . ... . .
lowQualScore : 55 000 888 3 77777 1 1 1 1 2 1 1 77777 22 5 3 66 66 1 55555555555555555555555555555555555555555555555555555555555 11111 1 888 22 4 0 11 4 0 1 888 0 888 22222222 1 111111111111111111111 9 11111 7 99 88 7 3333333333333333 22 3 0 6 88 8 2 22 8 8 8 88 0 0000000 2 88 00000 0 555 0 0 2 5 0 0 000 0 88 55 555 0 0 2 2 0 0 555 888888 0 0 0 0 0 2 0 0 000 0 0 555 8888 0 0 888 8 88 00 4 88 00 0000 0 0 2 0 0 2 88 2222 22 0 0 5 0 77 3 3333333333333333 7 2 5 2 000000 0 8 0 0 0 4 7 00 7 0 2222 11 0 5 111 6666 0 111 1 5 0 0 7 4 5 99 0 0 888 9 0
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Reference ( family-7928 ) : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
gi|1 : ACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAATAG--A--CCGATT---------TGTCT---TG---------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAAAAAGATAAAACGT---A----G---AGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAAA----CCA-AAATGAAAGATA--GATA-G----ATC-G-------TC-----AAAGTCCTGTC--AA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATG-AAGC-GCTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTTAAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTCT---TG-TG-ATATAAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTGAAATA-TG-TAAT-T-AAAT-CTTTGG---TATTTCAACT-TACGAACGGACTTGTCTT--TTTTACATTTTTT--AAAAAAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCT-AAGTTT--AA--T-CAT-CAGAAGGTGCAC-GGCCAGGAG-TTAAGCGCAGA
gi|1 : tgttaaattacggataggaccgatagg-TC----TGG-GGGTT-ATGCCCA-ATATTATT-G-ACG---TCTATGCCA-TCTT-GTGTGTGGCA-TAGACCT-TGTT--CTACT-ACCAAG---TTTT-AATTAATTTTTtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|10 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggCGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CC------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TCTTCAAG-ATTTAG--A-AATTAG-CAACAACAA------AAAAACC---A----A---Acataaca
gi|11 : gtgttgaaattaacggtttagaccggattaagTCGGAGAAACGGGA-GCACAATAA---TAAAA-TAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTATTGCGA-T-TT----TG--------ATG--------------------GGT-TATGCCATTCTT-GTGTGTGGCA-TAGATCTGTGGT--CTA-T-ACCAAG---TTTTT-ATTAAg
gi|12 : -AATTGTGTTA-CTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-A-AT----TTTG-CCAAGTTCTATGTCA-TCTT-GTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
gi|13 : aTGTGTTA-TTTCTTAT-CAC-T-TT----TGT-GGTCTTATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TTTT-GTGTGTGGCA-TAGACCT-TGGT--CTA-TAAACAAGT--TTTTTAATTAATTTCTAAct
gi|14 : CCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CGGATT---------TGACT--ATGCCA-ATT-TT--CAAGATTAAGACGGAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-cact
gi|15 : -TTAA--A-AATTAG-CAACAACAAAT---TAAAAAACTAAAC---A---AACAAACAAA----G-A--------------TTAAAA-----CCA-AAACGAAACATA--GATA-GT-TTATC-G-------TT----TAAAGTTCCGTC--GAC
gi|16 : ACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-TAT--ATCCCTAGT---------TGTCT--ACACCA-Aacta
gi|17 : cgatagAT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-TAG--A--CCAA-T---------TGTCT--GTGCC--ATT-Taatctaagaaacaaagga
gi|18 : GAAGTACAATAA---TAAAAGTAAATAaaaaagttgaattctcagactggaattggattg
gi|18 : gtgtttA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCTT-GCGTGTTGCA-TAGACCTttttgtggtctatgccgatttgatgaggtctatgccatcttgcgtgttgcatagacct
gi|19 : gtgtttgaagtacaataataaaagtaaat-----GT-C-TA-TG-CCAGAT-CAA-A-----A--A-GACA-TAG--A--CCTA-T---------TGCCT--ATGTC--ATT-T
gi|2 : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TGG--A--CCGATT---------TGTCT--ATGCCA-ATT-TTTCC------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GAT--GT-ATATT-G-------TT----TAAAGTTCCGCC--GAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTTA-TT--CAA-----TC-ATAAAA---ATTTGGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAA-GCACTTG-AATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTTGTTTACA--TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGGTG--AATGT-CGTCC-GAAGGTGCTC-G--CAGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAAT--AAT--AAG-TAAATAACA-AT-GTTTTC-AATTTTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCT---TGTGTGGCA-TAGACCTGTGGT--CTA-T-A-CAAG---TTTTAAATTAATTTCTAAACAaaaaagtaaattctcaaactgat
gi|20 : GTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAT---TTATAAATCAATTTCTAA
gi|21 : CAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTca
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CTGATT----------------------------------------------------------TGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---AAAACA---AACAAACAAA----G-A--------------TAAAAAAAAACCCA-AAACGAAACATA--GATA-GT-ATATC----------C----TAAAGTTCCGGC--GACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCT-TGTGACCATGAC--CTTTAAAAA------TATTAATT--CAA-----TC-ATAAAA---GTTTAGAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TTT-TTCATTTCT---TG-TG-ATTTAAAAATAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAA-GCACTTGACATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAA--A-TTCAAAC-GACTTGTCTTTGTTTTACA-TTTTT--ATACCATAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTGAAAA--TACAT-C-GAAGGTGCTC-GGCCAGGGG-TTAAGCGCAAACCAAA-GACTCTGGTC--G---AACAAT-CATCGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C---------------------------------------------------AAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAATAAAG-A--------------TGAAAAA----CCA-AAACGAAACATA--GGTA-GT-ATATC-N-------NN----NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNN-NNNN-------GTCAATT--CAA-----TC-ATAAAA---GTTTTGAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGTATATAAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAA-GCACTTGAAATACCGTTAATATAAAATAC-TTGGGTTTATTCAAAAACTACGAAT-GACTTGTCTTTGTTTTACA-TTTTTTAAAAAAAAAACG--AAAAAACTTAG-AAAAGG-A
gi|5 : tgtttgaaattaacggtagaccgatagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-TAG--A--CCTATT---------C-TCT--ATGCCACA----T--CAAAAA-------GACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTgatacaatgtagccac
gi|6 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagATTCAAAC--T-CGAAC-GACTTGTCTTTGATT-ACA-TTTTT--TTAAAAA--C---AAA----CTAG-AAAAGAGATG---G-CTTAAGT-G--AA--A-CA--C-GAAGCTGCTCCGGCCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAA-TAAATAACATATCGTTTTC-AAATGTGTTA-TTTCTATT-CAATT-TT----TGTCGGTCT-ATG-C-G-AT----TT-GCATGAGTTCT-T-CCA--CTT-GTGT-T-GCATTAGACCTGTGGTCACTA-T-ACCAAGTCTTTTTTAATTAA--TCTAAgt
gi|7 : agcannnnnnnnnnnnnnnnnnnnnnnnnACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-TAA--A--A-AATTATGTGCGCATGTCTCAATGTCT-ATGGTC--C------------GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAA---TAAAAA-C---A----A---A-CAAACAAAG---G-A--------------T-TAAAA----CCA-AAACGAAACATATGGATCTGTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAcac
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGAT----------------------------------------------AT----------T---CTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTAA-CAACAACATAA---AGAAAAAC---A----AAACAACAAACAAA----GAA--------------TAAAAA------CACAAAC-AAACATA--GAT
gi|9 : gtgtttgaaattaacggtagaccgatagAAGA-CAAA-AATA-AT-CTTTTA-AAATGTGTTACTTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-ATAT----TTTG-CCAAGTTCTATGTCA-TCTTTGTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
blockSeqs : GT CAA ATA G ACTGG G A A A C T . AAAAC AA . GG TC G TTATGTGCGCATGTCTCAATGTCTATGGTCCGATCAAGACAAGT GTTGC G ATG TT G T GT T G . C TAA AAACA TAAAGA T AAAAC C TG CT A TGGCACTATTCAGAAT CG C T A . A GG T T . A T A . . . . G C T G A A AC . CT AA AAA T T A A A G AT . C A T C . A C T ATA A . GTT AAAC A . TTG T TA A AA . AAAC . G T . T T AA TGT TC . C G C A T CAGCATGTCAATACAA G A G A AAAATT G T C . T C T T A GTAG TC T C AT . T CAT G T T G T G CA . A TCT T T
blockSeqs : . . . . . . . . . G . . . . . . . T TTTGACTATGCCAATTTTCAAGATTAAGACGGAT . G . TT . . . . . . A . AAAC GGA A A . . A . GTTT . A . N . G N N T . . T A . . . . A . T G . . AA . . CA . . . A A . . A . . A A . . A . . T . . . ACA T . TGT T . T AA . . . . T . . T . TA T . . G . . . GAACAATCAT . A G A AAT . . . . T . T . A GTAG T . C A . T CC T . . G . G A . . T C T
blockSeqs : . . . . . . . . . C . . . . . . . A TTCTCTATGCCACATCAAAAAGACAGACATA . G . TT . . . . . . A . CA GAA A A . . A . GTTT . C . A . N . . N . . . . . . . . T . T G . . A . . T . . . C . . . T . . A . . . . . . T . . . AC A . TGT T . A AA . . . . . . . . . A . . . . . . . A AAT . . . . A . T . . . T . C G . . AT G . . G . G A . . . T T
blockSeqs : . . . . . . . . . . . . . . . . . T TTTGTCTATGCCAATTTTTCCGAT . G . TG . . . . . . A . A GA G A . . A . NNNN . N . . A . . TGA . . T . . . . . . . A . . . . . T . C G . . AT G . . G . G . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . G TTTGTCTATGCCAATTTTC . G . TT . . . . . . A . A GA A . . . . . CT . C . . . . . T . C G . . AT G . . G . G . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . G GAT . G . TT . . . . . . A . A GA . . . . . . . T . . G . . CC T . . . . G . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . G TAT . . . . . . . . . . . . A . . . . . . . . . T . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . . T TT . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : TT *** GA******************* GTTT************ AC** TGN T* ** T* G** ****
originalCons : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-G-------TC----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAACA-TACGAAC-GACTTGTCTTTGTTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
finalCons : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAAGA-------------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATCGTTT------------AAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TATTCAAAC--TACGAAC-GACTTGTCTTTGNTTTACAT-TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCCG--AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111 11111111 333333333333333333333 11111 3333333333333333 11 11 1 11 1 3333333 11 22222 1 111 1 1 1 111 1 22 111 1 1 1 1 111 222222 1 2 1 1 1 1 111 1 1 111 11 1 11 11 1111 1 1 11 2222 11 1 1 1 22 6666666666666666 222222 1 1 11 1 2222 1111 1 11 111
lowQualScore : 55 777 555 3 77777 3 3 3 3 9 3 3 77777 44 0 3 44 44 3 99999999999999999999999999999999999999999999999999999999999 11111 1 777 55 4 4 66 4 5 0 888 2 888 77777777 0 888888888888888888888 3 77777 5 77 99 6 6666666666666666 99 4 8 7 33 0 9 55 0 0 5 33 0 2222222 3 33 55555 0 777 1 0 3 2 0 0 111 0 33 33 777 0 0 9 3 0 0 777 888888 0 2 0 0 0 3 0 0 111 0 0 777 8 11 8 0 8 88 0 88 11 1 44 11 7777 8 8 3 0 0 3 33 1111 33 0 0 2 0 00 7 0000000000000000 6 3 2 3 555555 8 0 0 0 8 1 6 44 5 0 1111 55 5 2 999 0000 0 666 0 2 5 5 6 4 2 66 5 5 333 5 5
lowQualScore : .. ... ... . ..... . . . . . . . ..... .. . . .. .. . ........................................................... ..... . ... .. . . .. . . . ... . ... ........ . ..................... . ..... . .. .. . ................ .. . . . .. . . .. . . . .. . ....... . .. ..... . ... . . . . . . ... . .. .. ... . . . . . . ... ...... . . . . . . . . ... . . ... . .. . . . .. . .. .. . .. .. .... . . . . . . .. .... .. . . . . .. . ................ . . . . ...... . . . . . . . .. . . .... .. . . ... .... . ... . . . . . . . .. . . ... . .
lowQualScore : 55 000 888 3 77777 1 1 1 1 2 1 1 77777 22 5 3 66 66 1 55555555555555555555555555555555555555555555555555555555555 11111 1 888 22 4 0 11 4 0 1 888 0 888 22222222 1 111111111111111111111 9 11111 7 99 88 7 3333333333333333 22 3 0 6 88 8 2 22 8 8 8 88 0 0000000 2 88 00000 0 555 0 0 2 5 0 0 000 0 88 55 555 0 0 2 2 0 0 555 888888 0 0 0 0 0 2 0 0 000 0 0 555 0 00 0 6 0 88 8 88 00 4 88 00 0000 0 0 2 0 0 2 88 2222 22 0 0 5 0 77 3 3333333333333333 7 2 5 2 000000 0 8 0 0 0 4 7 00 7 0 2222 11 0 5 111 6666 0 111 1 5 0 0 7 4 5 99 0 0 888 9 0
consensus : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-------GTT-----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TA-TTC--AAAC-TACGAAC-GACTTGTCTTTGNTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
Reference ( family-7928 ) : ACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GATA-GT-ATATC-------GTT-----TAAAGTTCCGTC--GACGGCTAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTACGGAAGC-GCTCTNTGCGACCATGAC--CTTT-AAAA------TGTTAATT--CAA-----TC-ATAAAA---GTTTNGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTCATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CGTC-TAGA-AGCGAA-GCACTTGAAATA-CG-TAAT-T-AAAT-C-TTGG---TA-TTC--AAAC-TACGAAC-GACTTGTCTTTGNTTTACA-TTTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTG--AA--T-CAT-C-GAAGGTGCTC-GGCCAGGAG-TTAAGCGCAAACCAAA-GACACTGGTT--G---GTCAAT-CA-CGTCGTCGGAGAAACGGGAAGTACAATAAAATTAAAA-TAAATAACA-AT-GTTTTC-AATTGTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ACGAGGTCTATGCCA-TCTT-GTGTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAG---TTTTNAATTAATTTCTAAACA
gi|1 : ACCGAGT--T---CATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CATTA-----A--TTGAGAATAG--A--CCGATT---------TGTCT---TG---------------------------------------TGTCT---------CAA---TTC---AG-A-T--A--A-AAT-AG-CAACAACAAAAAGATAAAACGT---A----G---AGGAGACAGA----G-ACGAGACGAGAAGAGTAAAAAA----CCA-AAATGAAAGATA--GATA-G----ATC-------GTC------AAAGTCCTGTC--AA--GCTATG-ACTTCAAGTGTAAAATTCTGTATGTGCTATG-AAGC-GCTCTGTGTGACCA-GACTGCTGT-GAGAGAATTGTGTTAAGTGGCAAGGTGGTCGATGAAGAATGTGTTGAATTTAA-CCTTT-CGTGT------CGCGAGTATTC-TC-GCACAC-A-CTCAACG-TTCATTCATTTCT---TG-TG-ATATAAAA-TAAATGATT-AATTTCATTT-TTAAACA-TTTTGTGACGCGGCTTAG-TGTA-TAGA-AGCGAAGGCACTTGAAATA-TG-TAAT-T-AAAT-CTTTGG---TATTTC--AACT-TACGAACGGACTTGTCTTT--TTTACATTTTTT--AAAAAAAGTCGGAGAA----CTAGAAAAAGA-ATGTATGCCT-AAGTTT--AA--T-CAT-CAGAAGGTGCAC-GGCCAGGAG-TTAAGCGCAGA
gi|1 : tgttaaattacggataggaccgatagg-TC----TGG-GGGTT-ATGCCCA-ATATTATT-G-ACG---TCTATGCCA-TCTT-GTGTGTGGCA-TAGACCT-TGTT--CTACT-ACCAAG---TTTT-AATTAATTTTTtagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggtctgggggttatgcccaatattattgacgtctatgccatcttgtgtgtggcatagaccttgttctactaccaagttttaattaatttttcataaca
gi|10 : tgttaaattacggataggaccgataggaccgagttcatgccaaatgtcacaggtctataccaatcattaattgagaatagaccgatttgtcttgtgtctcaattcagataaaatagcaacaacaaaaagataaaacgtagaggagacagagacgagacgagaagagtaaaaaaccaaaatgaaagatagatagatcgtcaaagtcctgtcaagctatgacttcaagtgtaaaattctgtatgtgctatgaagcgctctgtgtgaccagactgctgtgagagaattgtgttaagtggcaaggtggtcgatgaagaatgtgttgaatttaacctttcgtgtcgcgagtattctcgcacacactcaacgttcattcatttcttgtgatataaaataaatgattaatttcatttttaaacattttgtgacgcggcttagtgtatagaagcgaaggcacttgaaatatgtaattaaatctttggtatttcaacttacgaacggacttgtcttttttacattttttaaaaaaagtcggagaactagaaaaagaatgtatgcctaagtttaatcatcagaaggtgcacggccaggagttaagcgcagatagaacgccatagaggacagtgtgtcgggaatgcagagcgtcaatttgttgaggtgcagtggcgagattttggCGAGT--CCAATATGCCAAAT---GTC-ACAG-----GTGC-TA-TA-CCA-ATTCAT-A-----A--TTGAGA-TAGGGA--CC------------------------------------------------GAT----------TTGTCTA-----TGCCAA---TCTTCAAG-ATTTAG--A-AATTAG-CAACAACAA------AAAAACC---A----A---Acataaca
gi|11 : gtgttgaaattaacggtttagaccggattaagTCGGAGAAACGGGA-GCACAATAA---TAAAA-TAAATAACA-AT-GCTTTCAAATTTTGTTA-TTTCTATTGCGA-T-TT----TG--------ATG--------------------GGT-TATGCCATTCTT-GTGTGTGGCA-TAGATCTGTGGT--CTA-T-ACCAAG---TTTTT-ATTAAg
gi|12 : -AATTGTGTTA-CTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-A-AT----TTTG-CCAAGTTCTATGTCA-TCTT-GTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA
gi|13 : aTGTGTTA-TTTCTTAT-CAC-T-TT----TGT-GGTCTTATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TTTT-GTGTGTGGCA-TAGACCT-TGGT--CTA-TAAACAAGT--TTTTTAATTAATTTCTAAct
gi|14 : CCGAGT--C---TATGCTAAAT---GTC-ACAG-----GT-C-TAATA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CGGATT---------TGACT--ATGCCA-ATT-TT--CAAGATTAAGACGGAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-cact
gi|15 : -TTAA--A-AATTAG-CAACAACAAAT---TAAAAAACTAAAC---A---AACAAACAAA----G-A--------------TTAAAA-----CCA-AAACGAAACATA--GATA-GT-TTATC-------GTT-----TAAAGTTCCGTC--GAC
gi|16 : ACCGCGA--C---TATGCCATAT---GAG-GCTG-----GG-C-CA-TG-CCA-TG-TAC-A-----A--ATAAGA-TAT--ATCCCTAGT---------TGTCT--ACACCA-Aacta
gi|17 : cgatagAT---GCC-ATAG-----GT-C-TA-TG-CTGCAT-TAA-AAAAACA--T--AGA-TAG--A--CCAA-T---------TGTCT--GTGCC--ATT-Taatctaagaaacaaagga
gi|18 : GAAGTACAATAA---TAAAAGTAAATAaaaaagttgaattctcagactggaattggattg
gi|18 : gtgtttA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCTT-GCGTGTTGCA-TAGACCTttttgtggtctatgccgatttgatgaggtctatgccatcttgcgtgttgcatagacct
gi|19 : gtgtttgaagtacaataataaaagtaaat-----GT-C-TA-TG-CCAGAT-CAA-A-----A--A-GACA-TAG--A--CCTA-T---------TGCCT--ATGTC--ATT-T
gi|2 : ACCGAGT--C---TATGCCAAAT---GCC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TGG--A--CCGATT---------TGTCT--ATGCCA-ATT-TTTCC------------GAT----------TTGTCTA-----TGCCAA---TTTTCAAG-A-TTAA--A-AATTAG-CAACAACAACA---TAAAAAAC---A----A---AACAAACAAA----G-A--------------TAAAAAA----CCA-AAACGAAACATA--GAT--GT-ATATT-------GTT-----TAAAGTTCCGCC--GAAGGAAAGG-ACTGAAAGTGTTAAAATCT--ATGTGCTATGAAAGC--CTCTTAGCGACCATGAC--CTTT-AAAA------TGTTA-TT--CAA-----TC-ATAAAA---ATTTGGAATTTAA-CCTTTTCGTGTGTTGCTTGCGAGTATTC-TC-GCACAC-A-CTCA-C--TTAATTCATTTCT---TG-TG-ATATAAAAATAAATGATT-AATTTCATTT-TTAAA-A-TTTGTTGAC------CAT-CATC-TAGA-AGCGAA-GCACTTG-AATA-CG-TAAT-T-AAAT-C-TTGG---TA-TTC--AAACATACGAAC-GACTTGTCTTTTGTTTACA--TTTT--AAAAAAAAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGGTG--AATGT-CGTCC-GAAGGTGCTC-G--CAGGAG-TTAAGCGCAAACCAAAGGACACTGGTT-------TCAAT----CGTCGTCGG-GAAACGGGAAGTACAAT--AAT--AAG-TAAATAACA-AT-GTTTTC-AATTTTGTTA-TTTCTATT-CAA-T-TT----TGT-GGTCT-ATGCC-G-AT----TT-G-ATGAGGTCTATGCCA-TCT---TGTGTGGCA-TAGACCTGTGGT--CTA-T-A-CAAG---TTTTAAATTAATTTCTAAACAaaaaagtaaattctcaaactgat
gi|20 : GTGTGGCA-TAGACCTGTGGT--CTA-T-ACCAAT---TTATAAATCAATTTCTAA
gi|21 : CAAAT---GTC-ATAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTca
gi|3 : ACCGAGT--C---TATGACAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CTGATT----------------------------------------------------------TGTCTA-----TGCCAA---TTTGCAAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---AAAACA---AACAAACAAA----G-A--------------TAAAAAAAAACCCA-AAACGAAACATA--GATA-GT-ATATC---------C-----TAAAGTTCCGGC--GACGGCTAGA-ACTG-AAGTGTTAAAATCT--ATGTGCTTCTGAAGCGGCTCT-TGTGACCATGAC--CTTTAAAAA------TATTAATT--CAA-----TC-ATAAAA---GTTTAGAATTTAACCCTTTTCGTGTGTTGCTTGCGAGTATTC-TCAACACAC-ACCTCA-C--TTT-TTCATTTCT---TG-TG-ATTTAAAAATAAATG----------------TAAA-T-TTTGTTGAC------CAT-CATCTTAGA-AGTGAA-GCACTTGACATA-CG-TAAT-T-AAAT-C-TTGG---TA-TTC--AAAT-T-CAAAC-GACTTGTCTTTGTTTTACA-TTTTT--ATACCATAACG--AAA----CTAG-AAAAGA-ATGTATG-CT-AAGTTGAAAA--TACAT-C-GAAGGTGCTC-GGCCAGGGG-TTAAGCGCAAACCAAA-GACTCTGGTC--G---AACAAT-CATCGTCGTCGGAGAAAC
gi|4 : agtgtttgaaattaacggtagaccgatagACCGAGT--C---TATGCCAAAT---GTC-ACAG-----GT-C-TA-TA-CCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGATT---------TGTCT--ATGCCA-ATT-TT--C---------------------------------------------------AAG-A-TTAA--A-AATTAG-CAACAACAAAA---TAAAAAAC---A----A---AACAAACAAATAAAG-A--------------TGAAAAA----CCA-AAACGAAACATA--GGTA-GT-ATATC-------NNN-----NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNN-NNNN-------GTCAATT--CAA-----TC-ATAAAA---GTTTTGAATTTAA-CTTTTTCGTGTGTTGCTTGCGAGTATTCAAC-ACACACAA-CTCA-CCTTTCATTCATTTCTAAATGTTGTATATAAAACTAAATGATTAAATTTCATTTGTTAAA-ATTTTGTTGAC------CATCCATCATAGACAGCAAA-GCACTTGAAATACCGTTAATATAAAATAC-TTGGGTTTA-TTCAAAAAC-TACGAAT-GACTTGTCTTTGTTTTACA-TTTTTTAAAAAAAAAACG--AAAAAACTTAG-AAAAGG-A
gi|5 : tgtttgaaattaacggtagaccgatagGT--T---TGTGGCAAAT---GCC-ATAG-----GT-C-TA-TG-TCACAT-CA--A-----A--AAGACA-TAG--A--CCTATT---------C-TCT--ATGCCACA----T--CAAAAA-------GACAGACATA---TTGTCTA-----TGCCAG---TTTTTAAA-A---AAGTA-AATTgatacaatgtagccac
gi|6 : ctgatagactgcggctatgccaaattaggttgggtcattatgcaaaaaagatttcccgaacatgccaaattctattaattaacaaaggacaatatcaaattgaatagattaattgcagaattggaaatggagtatgaagttgaataaaaagacatgaaatatgttcaatcatgtttattttttctcaataaatgtgtaattacttttgtcgtcaaattttggtcagA-TTC--AAAC-T-CGAAC-GACTTGTCTTTGATT-ACA-TTTTT--TTAAAAA--C---AAA----CTAG-AAAAGAGATG---G-CTTAAGT-G--AA--A-CA--C-GAAGCTGCTCCGGCCAGGAGCTTAAGCGCAATACAA----CAC-GGTTCAGCATGTCAATACAACGTC-TCGGAGAAACGG-AAGTACAATAAAATTAAAA-TAAATAACATATCGTTTTC-AAATGTGTTA-TTTCTATT-CAATT-TT----TGTCGGTCT-ATG-C-G-AT----TT-GCATGAGTTCT-T-CCA--CTT-GTGT-T-GCATTAGACCTGTGGTCACTA-T-ACCAAGTCTTTTTTAATTAA--TCTAAgt
gi|7 : agcannnnnnnnnnnnnnnnnnnnnnnnnACCGAGT--C---TATGCCCAACATAGTCGACAGACTGGGT-C-TA-TA-CCG-AT-CAT-A-----AAATTGAGA-TAA--A--A-AATTATGTGCGCATGTCTCAATGTCT-ATGGTC--C------------GATCAAGACAAGTTTGTCTAGTTGCTGCGAAATGTTTTCAAGGA-TTAA--A-A-TTAGGCACCAATAAAA---TAAAAA-C---A----A---A-CAAACAAAG---G-A--------------T-TAAAA----CCA-AAACGAAACATATGGATCTGTAATATCTGGCACTATTCAGAATAGAGTTCCGTTCGGACGGCTAGGTACTGAGAATGTTAcac
gi|8 : ggACCGAGTGTC---TAT-CCAAAT---GTC-ACA-------T-CATA-TAACCA-AT-CAT-A-----A--TTGAGA-TAG--A--CCGAT----------------------------------------------AT----------T---CTA-----T--CAA---TT--CAAG-A-TTAA--ATAATTAA-CAACAACATAA---AGAAAAAC---A----AAACAACAAACAAA----GAA--------------TAAAAA------CACAAAC-AAACATA--GAT
gi|9 : gtgtttgaaattaacggtagaccgatagAAGA-CAAA-AATA-AT-CTTTTA-AAATGTGTTACTTTTTAT--CAA-TATTGTAGTGT-GGTCT-ATGCC-ATAT----TTTG-CCAAGTTCTATGTCA-TCTTTGTTT-TGGCA-TAGTCCTGAGGTA-CTA-T-ACCAAA---TTTTCAACCAATTTC-GAACA