lowQualScore : 2222222222222222222222222222222222222222222222222
lowQualScore : 11 666666666666666666666666 222 222222 1111 99999999999999999999999999999999999999999 111 666666666666666666666666666 111 11 2222222222222 1111 111 1 111 222 0000000000000000000000000000000000000000000000000 5555555555555555555 3333333333333333 5555555 444444444444444444444444444 1 1 111111 1 2222 22
lowQualScore : 77 444444444444444444444444 6 555 8 99 6 6 777777 6 0000 66666666666666666666666666666666666666666 99 6 8 3 0 444 8 8 8 444444444444444444444444444 444 0 11 2222222222222 6666 3 111 0 444 9 111 88 8888888888888888888888888888888888888888888888888 55 6666666666666666666 6 99 6666666666666666 99 6 6 8888888 444444444444444444444444444 1 6 6 0 6 8 9 0 0 6 6 1 1 6 6 3 5 5 5 0 9 2 0 7 1 4 6 6 3 000000 3 3 2 2 4 9 8888 77
lowQualScore : .. ........................ . ... . .. . . ...... . .... ......................................... .. . . . . ... . . . ........................... ... . .. ............. .... . ... . ... . ... .. ................................................. .. ................... . .. ................ .. . . ....... ........................... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ...... . . . . . . .... ..
lowQualScore : 00 222222222222222222222222 4 000 0 22 7 7 555555 7 6666 00000000000000000000000000000000000000000 22 7 0 8 8 000 0 0 0 000000000000000000000000000 000 8 00 0000000000000 8888 2 888 5 000 8 000 88 6666666666666666666666666666666666666666666666666 66 4444444444444444444 7 22 8888888888888888 22 7 7 0000000 555555555555555555555555555 7 7 7 7 7 0 8 0 0 7 7 0 0 7 7 4 7 7 7 4 0 5 1 0 4 3 7 7 2 222222 3 2 2 5 1 7 3333 55
consensus : AATAGATGTCCACCCACTG-NTCGTA------------------------AATNAATTA--A-CAAGTCTT--A-TTTTG-TTC----A-AG-AGTGA----AAG-------------------TC--------------------TT--ATTTT-G-TTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTG---T-----------TG----------TTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGG-ATA-T---TC-TCTAAAAT-C-TAAACTGTC--ACAGTCATACACATA---TTCCTAGGACAACCGC--ACC-TCCGCTT----------------------AG-AGTATT------T--C--------ACTTCGACTGTCGC--------TAGATTN----TT-AT--AATGTAAAAAT------------T---GA--AA-CTAAATAC-ACAGAGGTCGTAA---TAAAAAGCATCT---T-T--ACA-----TTT-TTTCTTCTTTTAA-TTAA-GCTTATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATC-CACTTG-TTCGACG-CC-ATAATGGAATGCTNA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCC----AGGAATGTCTC
Reference ( gi|3 ) : AATAGATGTCCACCCACTG-CTTGTA------------------------AATCAATT---A-CAAGTCTT--A-TTTTG-TTC----A-AG-AGTGA----AAG-------------------TC--------------------TT--ATTTT-G-TTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTG---T-----------TG----------TTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGA-GTA-T---TC-TCTAAAAT-C-TAAACTGTC--ACAGTCATGCACATA---TTCCTAGGATAACCGC--ACC-TCCGCTT----------------------GG-AG----------------------ACTTTGACTGTCAC--------TAAATTT----TT-AT--AATGTAAAAAT------------T---GA--AA-CTAAATAC-ACAGAGGTCGTAATTATAAAAAGCATCTGAAT-T--ACA-----TTTGTTTATTCTTTTAA-TTAA-GCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATC-CACTTG-TTTGATG-CC-ATAATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTC----AGG--TGTTTC
gi|1 : AATAGATGTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATAA-CAAGTCTT--ATTTTTG-TTT----A-AGTAGTGA----AAGGT-----------------TCGTCAAATTAATTACAAGTCATT--ATTTT-G-TTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTATTTT-----------TT----------TTTTTT---GGGTGGATGCATATCTAAAGTGAC-TTAAA--ATAG--GAA-TCCCTC-TATAACAT-CGTAAACTATTCAACAGTCATACACATA---TCTCTAGGACAA-CG---ACC-TCCGCTT----------------------GG-AGAATTCACATGTTACCTGATAGAATTTCGACTGTCGCCTCAACAGTAAA--A----TT-AT--AATGT-AAAAT------------T---GAAGAA-CTAAATAC-AAACAAGTCG------TAAAAAGCATT----T-T--ACA-----T---TTTCTTCTTTTAATTTAA-GCTTAT-TAAC-ATTTTTAAATATGTGCAATAA-TTTCCATC-CACTTG-TTCGACG-CCTAT-ATAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGTGG
gi|16 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaAATAGATATCCACCCACTG-GTTGTA------------------------acc
gi|13 : agatataAATAAATGTCCACCCACAG-CTTAT--------------------------ATTTATTAG-A-TAAGT-TC--A-CAATG-AAC----ATAA-ATTGATTACAAG-------------------TC--------------------TT--ATTTT-tttattagataagttcatatg
gi|2 : aagggtcgaagatatggcgggatataTCGTA------------------------ATTAAATT---AGCAAGTCTTCTA-TTTTGGTTCTTG-C-AG-AGTGA----A
gi|8 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttTCGTA------------------------AATTAATT---A-CAAGTCTT--A-TTTTG-TTCTTGAA-AG-AGTGA----AAgggtttggcttttgttgttgattgtttgtgttgttgtttgggtggatgcatatctaagctgactttaaaataggatactcctctaaaatgcaacttccagtcatcactcattctaggacaacgacctacgcttcgaatttactgttttacctgatagagacttcggcggttgttctttttattcaagtaaaaatattaagtaaacttgaaaactaaatacacagaggtcgtaaaaagcttgttacgttttcttctttaattaaagcttatcaacattttaaatgtgcaaaatttcgatcacattgttcgacggcataatggaagcttgcgtcttccgtctttgagcgaaggctgagaaggcttctaaatctacccttccgagacaatcgagggaatatgattccggatgagagggtccaatcgagtgggacccagtaaggtgtctca
gi|5 : gaaagggttA------------------------AATCAATT---A-CAAGTCTT--A-TTTTG-TTC----A-AG-AGTGA----AAG-------------------TC--------------------TT--ATTTTTG-TTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTG---T-----------TG----------TTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT---TC-TCTAAAAT---TAAACTGTC--ACAGTCATGCACATA---TTCCTAGGATAACCGC--ACT---CGCTT----------------------GGGAG----------------------ACTTTGACTGTCAC--------TAGATTT----TTTAT--AATGTAAAAAT------------T---GA--AA-CTAAATAC-ACAGAGGTCGTAATTATAAAAAGCATCTGAAT-C--ACA-----TTTGTTTAT-CTTTTAA-TTAA-GCTCATCTAAC-A-TTTTAAAAATGTGCAA-AAATTTCCATC-CACTTGTTTTGATG-CC-ATAATGGAATGCTTA-GTCTTT-CCGTC-TTGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtggtttgcgttttgttgttgattttttgttgttgttggggtgggtgcctatttaaagtgactttaaaatgggatatcttctaaaatctaaactgtcacag
gi|4 : T--A-TTTTG-TTC----A-AG-AGTGA----AAGGGTTTCGTTTACTTACAAGTC--------------------TT--ATTTC-G-TTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTT---T-----------TG----------TTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATG-ATA-T---CT-TCTAAAAT-C-TAAACTGTC--ACAGTCATACACATA---TTCCTAGGACAACCGC--ACC-TCCGCTT----------------------AG-AGTATTACATGTTACCTGATAGAGATTTCGACTGTCAC--------TAGAGTAAAAATT-AT--AATGTAAAAAT------------T---AA--AA-CTAAATAC-ACAGAGGTCGTAA------AAAGCATCT---T-T--ACA-----TGT-TTTCTCCTTTTAA-TTAA-GCTTATCTAAC-A-TTCTTAAAATGTGCAA-AA-TTTCCATC-CACTTG-TTCGACG-CC-ATAATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC----
gi|2 : ----AAG-------------------TC--------------------TTCTATTTT-GGTTCTTGCA-GAGTGAA-G---GGTTTGGC-TTT-TG-TTG---T-----------TGATTGTTTGTGTTGTTGTTTGGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGG-ATA-C---TCCTCTAAAATGC---AACT-TC---CAGTCAT-CACTCA---TTC-TAGGACAAC-G---ACC-TACGCTTCGAATTTACTGTTTTACCTGATAG-AG----------------------ACTTCGGCGGTTGT--------TC--TTT----TT-ATTCAA-GTAAAAATATTAAGTAAACTT---GA--AAACTAAATAC-ACAGAGGTCGTAA------AAAGC--TTG--T-T--ACG-----TTT---TCTTCTTT-AA-TTAAAGCTTATC-AAC-A-TTTTAAA--TGTGCAA-AA-TTTCGATCACA-TTG-TTCGACG-GC-ATAATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGG--TGTCTCtg
gi|8 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggtttcgtaattaaattagc----AAG-------------------TC--------------------TT--ATTTT-G-TTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTG---TTGATTTTTTGTTG----------TTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGG-ATA-T---CT-TCTAAAAT-C-TAAACTGTC--ACAGa
gi|6 : gaaagggtttcgtaaattaattacCACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTT----------------------AG-AGTTAT------------------ACT---ACTGTTA
gi|14 : ggcataa----TT-AT--AATGTAAAAAC------------T---GA--AA-CTAAATAC-ACGGAGTTCG------TAAAAAGTATTT---T-T--ACA-----TT--TTTCTTCTTTTAA-TTAA-GCTCATCTAAC-tctgagagcagactttatattcgaaacatgttcagcggaagatataacaaaacttataatgtaaaaattaaaaaaactaatactacagaggtcgttaaaagagcactaatataaacatagattttgcatttcgtttaataagcttatctaacaactttaaa
gi|6 : actaaagtaaaaa----TT-AT--AATGTAAAAAT------------TAAAAA--AA-CT-AATACTACAGAGGTCG---TTA-AAAGAGCA-CT-AATATAAACATAGATTTTGCAT-TTCGTTTAA--TAA-GCTTATCTAACAA-CTTTAAA
gi|4 : ggcataacacataaccttcctaggagaccgcttaccctccgcttagagttatactactgttatctgagagcagactttatattcgaaacatgttcagcggaagatataacaaaacTTCCGTC-CCCTCG-ATTG-TC-TT-AGAA-GGCCTTCTCA-GCC-TT-CCGTCTCAGAGACGGAAGACTAAG
gi|9 : tattttgttcaagagtgaaagggtttcgtttacttacaagtcttatttcgttcttgaaagagtgaaagccgggtttgcgttttggttttgttgttggggtggatgcctatttaaagtgactttaaaatatgatatcttctaaaatctaaactgtcacagtcatacacatattcctaggacaaccgcacctccgcttagagtattacatgttacctgatagagatttcgactgtcactagagtaaaaattataatgtaaaaattaaaactaaatacacagaggtcgtaaaaagcatctttacatgttttctccttttaattaagcttatctaacattcttaaaatgtgcaaaatttccatccacttgttcgacgccataatggaatgTTCCATC-CACTTG-TTCGACGGCC-ATAATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGGtgatgattctggaatgagaagggacccgatcgagtgggaccctg
gi|10 : aaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCAC----AGGAATATTTCcc
gi|10 : GTCTCTGA-AGGGTAGAGTTAGAAGGCCTT----CTCAG-CCTTCCGa
gi|18 : gctgagtcttccgtctctgacaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCaatcgagtggacggaatgatgattccggaatgagaagagtcccaatggaatggtccacaggaatatttca
gi|11 : cAGAAGGGTCCCAATCGAGTGGGA
gi|12 : aggaGAAGGGTCCCAATCGAGTGGGAagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA
Unaligned ( gi|17 ): AACCAGGGCCCCACTCGATAGGGATCCTTCTAGAAGCAGAAGGGAATGTT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 666666666666666666666666 22 111 99999999999999999999999999999999999999999 111 33333333333 111 11111 111 11 111 111 777777777777777777777777777777 3333333333333333333 3333333333333333 3333333 22222222222 111 1111111 1 2222
lowQualScore : 33 2 1 8 444444444444444444444444 1 99 44 99 6 8 444 8 88888888888888888888888888888888888888888 6 99 6 111 2 6 6 6 11111111111 111 99 6 11111 6 111 1 99 00 111 3 6 555 6 2 6 888888888888888888888888888888 7777777777777777777 5 77 0000000000000000 77 5 5 6666666 5 00000000000 000 0000000 5 5 5 88 8 8 6 6 6 6 1 5 5 5 4 0 2 4 5 5 1 555 5 1 0 4444 0
lowQualScore : .. . . . ........................ . .. .. .. . . ... . ......................................... . .. . ... . . . . ........... ... .. . ..... . ... . .. .. ... . . ... . . . .............................. ................... . .. ................ .. . . ....... . ........... ... ....... . . . .. . . . . . . . . . . . . . . . . . ... . . . .... .
lowQualScore : 88 5 0 0 222222222222222222222222 0 22 77 22 7 0 000 0 33333333333333333333333333333333333333333 7 22 7 777 5 7 7 7 77777777777 777 22 7 88888 7 777 0 22 88 777 7 7 888 7 5 7 333333333333333333333333333333 4444444444444444444 7 99 3333333333333333 99 7 7 1111111 7 99999999999 000 1111111 7 7 7 88 0 0 7 7 7 7 0 7 7 7 0 9 8 3 7 7 4 999 7 4 8 7777 7
consensus : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T---TC-TCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGG-AGT-----ATT------TTACCTGATAGAGA-TTCGACTGTCGC--------TAGATT----TTT-AT--AATGTAAAAAT------------T---GAA--A-CTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAATT-AA-GCTCATCTAAC-ATTTTAAAA-ATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CC-ATAATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
Reference ( family-786 ) : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T---TC-TCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAG-AGT-----ATT------TCAC-----------TTCGACTGTCGC--------TAGATT----NTT-AT--AATGTAAAAAT------------T---GAA--A-CTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAATT-AA-GCTTATCTAAC-ATTTTAAAA-ATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CC-ATAATGGAATGCTNA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTCTC
gi|1 : AATAGAT--GTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATA-ACAAGTCTT--ATTTTTG-TTT---AAGTAGTGAAAGGTTCGTCAAATTAATTACAAG-------------------TCATTA--TTTT-GTTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTAT-----------TTTTTTTTTTTGGGTGGATGCATATCTAAAGTGACTT-AAA--ATAGGA--A-TCCCTC-TATAACAT-CGTAAACTATTCAACAGTCATA-CACATA---TCTCTAGGACAAC-G---ACC-TCCGCTTGG-AGA-----ATTCACATGTTACCTGATAGAAT-TTCGACTGTCGCCTCAACAGTAAA------ATT-AT--AATGTAAAA-T------------T---GAAGAA-CTAAATAC-AAACAAGTCGTAA------AA-AGC----AT-T---TTACAT---TT-T--C--TTCTTTTAATTTAA-GCTTAT-TAAC-ATTTTTAAATATGTGCAATAA-TTTCCATCCAC-TTGTTC-GACG-CCTATA-TAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGT-GGACC
gi|10 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCACAGGAA--TATTTC
gi|11 : AGAAGGGTCCCAATCGAGTGGGATCCa
gi|12 : aGAAGGGTCCCAATCGAGTGGGATCCagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
gi|13 : TAGATAAGTTCAC--AATGAAC-ATA------------------------AATTGAT--TA--CAAGTCTT--ATTTT-ctagaagcaacaggcagaagggaatgttggaagggatgaagttacgcatcccaatcgagtgtacagaagggtcctgaaatatggagggataaaca
gi|14 : aagggtcgaagatatggcgggatataaataaatgtccacccacagcttatatttatTT-AT--AATGTAAAAAC------------T---GAA--A-CTAAATAC-ACGGAGTTCG---T---AAAA-AGT----ATTT---TTACA----TT-TTTC--TTCTTTTAATT-AA-GCTCATCTAAC-
gi|16 : actaaagtaaaaaAATAGAT--ATCCACCCACTGGTT-GT--------------------------ATTTAT--TAGATAAGT
gi|17 : agatataAGAAGGATCCCTATCGAGTGGGGCCCTGGtcatatg
gi|18 : aaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCagaagcagaagggaatgtt
gi|2 : cTC-GTA------------------------ATTAAAT--TA-GCAAGTCTTCTATTTT-GGTTCTTGCAG-AGTGAAG---------------------G-------------------GT-TTGGCTTTT-GTTGTTGA-----------------TTG----TT-TG-T-GT-----------TGTTGTTT---GGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGGA-TA-C---TCCTCTAAAATGC---AACT-TC---CAGTCAT--CACTCA---TTC-TAGGACAAC-G---ACC-TACGCTTCG-AATTTACTGTT------TTACCTGATAGAGACTTCGGCGGTTGT--------TC--TT----TTT-ATTCAA-GTAAAAATATTAAGTAAACTT---GAA--AACTAAATAC-ACAGAGGTCGTAA------AA-AGC-----TTG---TTACGT---TT-T--C--TTCTTT-AATT-AAAGCTTATC-AAC-ATTTTAAA---TGTGCAA-AA-TTTCGAT-CACATTGTTC-GACG-GC-ATAATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGGTGTCTC
gi|3 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttAATAGAT--GTCCACCCACTGCTT-GTA------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGAG-TA-T---TC-TCTAAAAT-C-TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACC-TCCGCTTGG-AG-----------------AC-----------TTTGACTGTCAC--------TAAATT----TTT-AT--AATGTAAAAAT------------T---GAA--A-CTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATTACAT---TTGTTTA--TTCTTTTAATT-AA-GCTCATCTAAC-ATTTTAAAA-ATGTGCAA-AA-TTTCCATCCAC-TTGTTT-GATG-CC-ATAATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTCAGG----TGTTTCa
gi|4 : T--ATTTT-G-TTC---AAG-AGTGAAA---------------------GGGTTTCGTTTACTTACAAGTC-TTA--TTTC-GTTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTTT-----------TGTTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATGA-TA-T---CT-TCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAG-AGT-----ATTACATG-TTACCTGATAGAGATTTCGACTGTCAC--------TAGAGTAAAAATT-AT--AATGTAAAAAT------------T---AAA--A-CTAAATAC-ACAGAGGTCG---T---AAAA-AGC----ATCT---TTACAT---GT-TTTC--TCCTTTTAATT-AA-GCTTATCTAAC-ATTCTTAAA-ATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CC-ATAATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC
gi|5 : A------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTTTGTTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTGT-----------TGTTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT---TC-TCTAAAAT---TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACT---CGCTTGGGAG-----------------AC-----------TTTGACTGTCAC--------TAGATT----TTTTAT--AATGTAAAAAT------------T---GAA--A-CTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATCACAT---TT-GTTT--ATCTTTTAATT-AA-GCTCATCTAAC-ATTTTAAAA-ATGTGCAA-AAATTTCCATCCAC-TTGTTTTGATG-CC-ATAATGGAATGCTTA-GTCTTT-CCGTCT-TGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtg
gi|6 : CATAACACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTTAG-AGT-----
gi|6 : ggTT-AT--AATGTAAAAAT------------TAAAAAA--A-CT-AATACTACAGAGGTCGT--T---AAAAGAGCACTAATAT---AAACATAGATT-TTGCATTTCGTTTAA-T-AA-GCTTATCTAACAACTTTAAAtatactactgttatctgagagcagactttatattcgaaacatgttcagcggaagatataacaaaacttataatgtaaaaattaaaaaaactaatactacagaggtcgttaaaagagcactaatataaacatagattttgcatttcgtttaataagcttatctaacaactttaaa
gi|8 : ggcataacacataaccttcctaggagaccgcttaccctccgcttagagttatactactgttatctgagagcagactttatattcgaaacatgttcagcggaagatataacaaaacAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTGTTGATTTTTTGTTGTTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGGA-TA-T---CT-TCTAAAAT-C-TAAACTGTC--ACAG
gi|9 : gaaagggtttcgtaaattaattacTTCCATCCAC-TTGTTC-GACGGCC-ATAATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11 666666666666666666666666 22 111 99999999999999999999999999999999999999999 111 33333333333 111 11111 111 11 111 111 0000000000000000000000000000000000000000000 444444444444444444444444444444 222222222222 11111 4444444 22222222222 22222 1 2222
lowQualScore : 33 2 1 8 444444444444444444444444 1 99 44 99 6 8 444 8 88888888888888888888888888888888888888888 6 99 6 111 2 6 6 6 11111111111 111 99 6 66666 111 1 99 00 111 1 3 6 555 6 5555555555555555555555555555555555555555555 6 99 6 999999999999999999999999999999 5 77 999999999999 00000 77 5 3333333 5 00000000000 33333 5 77 1 5 5 5 6 3 8 8 6 6 6 6 1 5 5 5 4 0 2 4 5 5 1 555 5 1 0 4444
lowQualScore : .. . . . ........................ . .. .. .. . . ... . ......................................... . .. . ... . . . . ........... ... .. . ..... ... . .. .. ... . . . ... . ........................................... . .. . .............................. . .. ............ ..... .. . ....... . ........... ..... . .. . . . . . . . . . . . . . . . . . . . . . . . ... . . . ....
lowQualScore : 88 5 0 0 222222222222222222222222 0 22 77 22 7 0 000 0 33333333333333333333333333333333333333333 7 22 7 777 5 7 7 7 77777777777 777 22 7 00000 777 0 22 88 777 0 7 7 888 7 5555555555555555555555555555555555555555555 7 22 7 999999999999999999999999999999 7 99 333333333333 33333 99 7 0000000 7 99999999999 33333 7 99 4 7 7 7 7 5 0 0 7 7 7 7 3 7 7 7 0 9 8 3 7 7 4 999 7 4 8 7777
consensus : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T---CCTCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGAC------TT-CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
Reference ( family-786 ) : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T---TCTCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGA-------TT-CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
gi|1 : AATAGAT--GTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATA-ACAAGTCTT--ATTTTTG-TTT---AAGTAGTGAAAGGTTCGTCAAATTAATTACAAG-------------------TCATTA--TTTT-GTTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTAT-----------TTTTTTTTTTTGGGTGGATGCATATCTAAAGTGAC-TTAAA--ATAGGA--A-TCCCTCTATAACAT-CGTAAACTATTCAACAGTCATA-CACATA---TCTCTAGGACAA-CG---ACC-TCCGCTTGGAG-----A------ATTCACATGTTACCTGATAG-AAT-------TT-CGA--C-TGT----CGCCTCAACAGTAAA--A--------TT-AT--AATGT-AAAA------------TT---G-AAGAACTAAATAC-AAACAAGTCG---T---AAAA-AGC----AT-T---TTACA-----T-TTTC--TTCTTTTAATTT-AAGCTTAT-TAAC-ATTTTTAAATATGTGCAATAA-TTTCCATCCAC-TTGTTC-GACG-CC-TATATAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGT-GGACC
gi|10 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCACAGGAA--TATTTC
gi|11 : AGAAGGGTCCCAATCGAGTGGGATCCa
gi|12 : aGAAGGGTCCCAATCGAGTGGGATCCagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
gi|13 : TAGATAAGTTCAC--AATGAAC-ATA------------------------AATTGAT--TA--CAAGTCTT--ATTTT-ctagaagcaacaggcagaagggaatgttggaagggatgaagttacgcatcccaatcgagtgtacagaagggtcctgaaatatggagggataaaca
gi|14 : aagggtcgaagatatggcgggatataaataaatgtccacccacagcttatatttat--------TT-AT--AATGTAAAAA------------CT---G-A--AACTAAATAC-ACGGAGTTCG---T---AAAA-AGT----ATTT---TTACA----TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-
gi|16 : actaaagtaaaaaAATAGAT--ATCCACCCACTGGTT-GT--------------------------ATTTAT--TAGATAAGT
gi|17 : agatataAGAAGGATCCCTATCGAGTGGGGCCCTGGtcatatg
gi|18 : aaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCagaagcagaagggaatgtt
gi|2 : cTC-GTA------------------------ATTAAAT--TA-GCAAGTCTTCTATTTT-GGTTCTTGCAG-AGTGAAG---------------------G-------------------GT-TTGGCTTTT-GTTGTTGA-----------------TTG----TT-TG-T-GT-----------TGTTGTTT---GGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGGA-TACT---CCTCTAAAATGC---AACT-TC---CAGTCAT--CACTCA---TT-CTAGGACAA-CG---ACC-TACGCTTCGAATTTACT------GTT------TTACCTGATAG-AGAC------TT-CGG--C-GGT----TGT--------T--CTTT--------TT-ATTCAA-GTAAAAATATTAAGTAAACTT---GAA--AACTAAATAC-ACAGAGGTCG---T---AAAA-AGC-----TTG---TTACG-----T-TTTC--TTC-TTTAA-TTAAAGCTTATC-AAC-A-TTTT--AAATGTGCAA-AA-TTTCGAT-CACATTGTTC-GACG-GCATA-ATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGGTGTCTC
gi|3 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttAATAGAT--GTCCACCCACTGCTT-GTA------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGAG-TA-T---TCTCTAAAAT-C-TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACC-TCCGCTTGGAG-----------------------AC------------------TT-TGA--C-TGT----CAC--------TAAATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATTACAT---TTGTTTA--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTT-GATG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTCAGG----TGTTTCa
gi|4 : T--ATTTT-G-TTC---AAG-AGTGAAA---------------------GGGTTTCGTTTACTTACAAGTC-TTA--TTTC-GTTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTTT-----------TGTTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATGA-TA-T---CTTCTAAAAT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAGAG-----T------ATTACATG-TTACCTGATAG-AGA-------TTTCGA--C-TGT----CAC--------TAGAGTAAAAA----TT-AT--AATGTAAAAA------------TT---A-A--AACTAAATAC-ACAGAGGTCGTAA------AA-AGC----ATCT---TTACAT---GT-TTTC--TCCTTTTAA-TT-AAGCTTATCTAAC-A-TTCTTAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC
gi|5 : A------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTTTGTTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTGT-----------TGTTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT---TCTCTAAAAT---TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACT---CGCTTGG---------------------------------G-AGAC------TT-TGA--C-TGT----CAC--------TAGATTT--------TTTAT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATCACAT---TT-GTTT--ATCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AAATTTCCATCCAC-TTGTTTTGATG-CCATA-ATGGAATGCTTA-GTCTTT-CCGTCT-TGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtg
gi|6 : CATAACACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTTAGAG-----TTATACTACTG-----TTATCTGAGAGCAGACTTTATATT-CGAAACATGTTCAGCGG--------AAGATATAACAAAACTT-AT--AATGTAAAAA------------TTAAAA-A--AACT-AATACTACAGAGGTCGT--T---AAAAGAGCACTAATAT---AAACATAGATT-TTGCATTTCGTTTAA--T-AAGCTTATCTAACAA-CTTTAAA
gi|8 : ggAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTGTTGATTTTTTGTTGTTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGGA-TA-T---CTTCTAAAAT-C-TAAACTGTC--ACAG
gi|9 : gaaagggtttcgtaaattaattacTTCCATCCAC-TTGTTC-GACGGCCATA-ATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA
Alignments
lowQualScore : 11 666666666666666666666666 22 111 99999999999999999999999999999999999999999 111 33333333333 111 1 111 11 111 111 888888888888888888888 111111 444444444444444444444444444444 222222222222 11111 4444444 22222222222 22222 1 2222
lowQualScore : 33 2 1 8 444444444444444444444444 1 99 44 99 6 8 444 8 88888888888888888888888888888888888888888 6 99 6 111 2 6 6 6 11111111111 111 99 6 3 6 6 6 111 1 99 00 111 1 3 6 555 6 777777777777777777777 1 3 6 2 999999 99 6 999999999999999999999999999999 5 77 999999999999 00000 77 5 3333333 5 00000000000 33333 5 77 1 5 5 5 6 3 8 8 6 6 6 6 1 5 5 5 4 0 2 4 5 5 1 555 5 1 0 4444
lowQualScore : .. . . . ........................ . .. .. .. . . ... . ......................................... . .. . ... . . . . ........... ... .. . . . . . ... . .. .. ... . . . ... . ..................... . . . . ...... .. . .............................. . .. ............ ..... .. . ....... . ........... ..... . .. . . . . . . . . . . . . . . . . . . . . . . . ... . . . ....
lowQualScore : 88 5 0 0 222222222222222222222222 0 22 77 22 7 0 000 0 33333333333333333333333333333333333333333 7 22 7 777 5 7 7 7 77777777777 777 22 7 3 7 7 7 777 0 22 88 777 0 7 7 888 7 888888888888888888888 0 0 7 5 222222 22 7 999999999999999999999999999999 7 99 333333333333 33333 99 7 0000000 7 99999999999 33333 7 99 4 7 7 7 7 5 0 0 7 7 7 7 3 7 7 7 0 9 8 3 7 7 4 999 7 4 8 7777
consensus : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
Reference ( family-786 ) : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
gi|1 : AATAGAT--GTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATA-ACAAGTCTT--ATTTTTG-TTT---AAGTAGTGAAAGGTTCGTCAAATTAATTACAAG-------------------TCATTA--TTTT-GTTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTAT-----------TTTTTTTTTTTGGGTGGATGCATATCTAAAGTGAC-TTAAA--ATAGGA--A-TCCCTCTATAACAT-CGTAAACTATTCAACAGTCATA-CACATA---TCTCTAGGACAA-CG---ACC-TCCGCTTGGAG-----A------ATTCACATGTTACCTGATAG-A-ATTT------CGA--C-TGT----CGCCTCAACAGTAAA--A--------TT-AT--AATGT-AAAA------------TT---G-AAGAACTAAATAC-AAACAAGTCG---T---AAAA-AGC----AT-T---TTACA-----T-TTTC--TTCTTTTAATTT-AAGCTTAT-TAAC-ATTTTTAAATATGTGCAATAA-TTTCCATCCAC-TTGTTC-GACG-CC-TATATAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGT-GGACC
gi|10 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCACAGGAA--TATTTC
gi|11 : AGAAGGGTCCCAATCGAGTGGGATCCa
gi|12 : aGAAGGGTCCCAATCGAGTGGGATCCagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
gi|13 : TAGATAAGTTCAC--AATGAAC-ATA------------------------AATTGAT--TA--CAAGTCTT--ATTTT-ctagaagcaacaggcagaagggaatgttggaagggatgaagttacgcatcccaatcgagtgtacagaagggtcctgaaatatggagggataaaca
gi|14 : aagggtcgaagatatggcgggatataaataaatgtccacccacagcttatatttat--------TT-AT--AATGTAAAAA------------CT---G-A--AACTAAATAC-ACGGAGTTCG---T---AAAA-AGT----ATTT---TTACA----TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-
gi|16 : actaaagtaaaaaAATAGAT--ATCCACCCACTGGTT-GT--------------------------ATTTAT--TAGATAAGT
gi|17 : agatataAGAAGGATCCCTATCGAGTGGGGCCCTGGtcatatg
gi|18 : aaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCagaagcagaagggaatgtt
gi|2 : cTC-GTA------------------------ATTAAAT--TA-GCAAGTCTTCTATTTT-GGTTCTTGCAG-AGTGAAG---------------------G-------------------GT-TTGGCTTTT-GTTGTTGA-----------------TTG----TT-TG-T-GT-----------TGTTGTTT---GGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGGA-TACT-CCTCTA-AA-ATGC---AACT-TC---CAGTCAT--CACTCA---TT-CTAGGACAA-CG---ACC-TACGCTTCGAATTTACT------GTT------TTACCTGATAG-AGACTT------CGG--C-GGT----TGT--------T--CTTT--------TT-ATTCAA-GTAAAAATATTAAGTAAACTT---GAA--AACTAAATAC-ACAGAGGTCG---T---AAAA-AGC-----TTG---TTACG-----T-TTTC--TTC-TTTAA-TTAAAGCTTATC-AAC-A-TTTT--AAATGTGCAA-AA-TTTCGAT-CACATTGTTC-GACG-GCATA-ATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGGTGTCTC
gi|3 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttAATAGAT--GTCCACCCACTGCTT-GTA------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGAG-TA-T-TCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACC-TCCGCTTGGAG-----------------------------------ACTT------TGA--C-TGT----CAC--------TAAATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATTACAT---TTGTTTA--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTT-GATG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTCAGG----TGTTTCa
gi|4 : T--ATTTT-G-TTC---AAG-AGTGAAA---------------------GGGTTTCGTTTACTTACAAGTC-TTA--TTTC-GTTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTTT-----------TGTTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAGAG-----T------ATTACATG-TTACCTGATAG-AGATTT------CGA--C-TGT----CAC--------TAGAGTAAAAA----TT-AT--AATGTAAAAA------------TT---A-A--AACTAAATAC-ACAGAGGTCGTAA------AA-AGC----ATCT---TTACAT---GT-TTTC--TCCTTTTAA-TT-AAGCTTATCTAAC-A-TTCTTAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC
gi|5 : A------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTTTGTTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTGT-----------TGTTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT-TCTCTA-AA-AT---TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACT---CGCTTGG---------------------------------G-AGACTT------TGA--C-TGT----CAC--------TAGATTT--------TTTAT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATCACAT---TT-GTTT--ATCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AAATTTCCATCCAC-TTGTTTTGATG-CCATA-ATGGAATGCTTA-GTCTTT-CCGTCT-TGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtg
gi|6 : CATAACACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTTAGAG-----TTATACTACTG-----TTATCTGAGAGCAGACTTTATATTCGAAACATGTTCAGCGG--------AAGATATAACAAAACTT-AT--AATGTAAAAA------------TTAAAA-A--AACT-AATACTACAGAGGTCGT--T---AAAAGAGCACTAATAT---AAACATAGATT-TTGCATTTCGTTTAA--T-AAGCTTATCTAACAA-CTTTAAA
gi|8 : ggAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTGTTGATTTTTTGTTGTTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAG
gi|9 : gaaagggtttcgtaaattaattacTTCCATCCAC-TTGTTC-GACGGCCATA-ATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA
Alignments
lowQualScore : 11 666666666666666666666666 22 111 99999999999999999999999999999999999999999 111 33333333333 111 1 111 11 111 111 888888888888888888888 111111 444444444444444444444444444444 222222222222 11111 4444444 22222222222 22222 1 2222
lowQualScore : 33 2 1 8 444444444444444444444444 1 99 44 99 6 8 444 8 88888888888888888888888888888888888888888 6 99 6 111 2 6 6 6 11111111111 111 99 6 3 6 6 6 111 1 99 00 111 1 3 6 555 6 777777777777777777777 1 3 6 2 999999 99 6 999999999999999999999999999999 5 77 999999999999 00000 77 5 3333333 5 00000000000 33333 5 77 1 5 5 5 6 3 8 8 6 6 6 6 1 5 5 5 4 0 2 4 5 5 1 555 5 1 0 4444
lowQualScore : .. . . . ........................ . .. .. .. . . ... . ......................................... . .. . ... . . . . ........... ... .. . . . . . ... . .. .. ... . . . ... . ..................... . . . . ...... .. . .............................. . .. ............ ..... .. . ....... . ........... ..... . .. . . . . . . . . . . . . . . . . . . . . . . . ... . . . ....
lowQualScore : 88 5 0 0 222222222222222222222222 0 22 77 22 7 0 000 0 33333333333333333333333333333333333333333 7 22 7 777 5 7 7 7 77777777777 777 22 7 3 7 7 7 777 0 22 88 777 0 7 7 888 7 888888888888888888888 0 0 7 5 222222 22 7 999999999999999999999999999999 7 99 333333333333 33333 99 7 0000000 7 99999999999 33333 7 99 4 7 7 7 7 5 0 0 7 7 7 7 3 7 7 7 0 9 8 3 7 7 4 999 7 4 8 7777
consensus : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
Reference ( family-786 ) : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
gi|1 : AATAGAT--GTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATA-ACAAGTCTT--ATTTTTG-TTT---AAGTAGTGAAAGGTTCGTCAAATTAATTACAAG-------------------TCATTA--TTTT-GTTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTAT-----------TTTTTTTTTTTGGGTGGATGCATATCTAAAGTGAC-TTAAA--ATAGGA--A-TCCCTCTATAACAT-CGTAAACTATTCAACAGTCATA-CACATA---TCTCTAGGACAA-CG---ACC-TCCGCTTGGAG-----A------ATTCACATGTTACCTGATAG-A-ATTT------CGA--C-TGT----CGCCTCAACAGTAAA--A--------TT-AT--AATGT-AAAA------------TT---G-AAGAACTAAATAC-AAACAAGTCG---T---AAAA-AGC----AT-T---TTACA-----T-TTTC--TTCTTTTAATTT-AAGCTTAT-TAAC-ATTTTTAAATATGTGCAATAA-TTTCCATCCAC-TTGTTC-GACG-CC-TATATAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGT-GGACC
gi|10 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCACAGGAA--TATTTC
gi|11 : AGAAGGGTCCCAATCGAGTGGGATCCa
gi|12 : aGAAGGGTCCCAATCGAGTGGGATCCagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
gi|13 : TAGATAAGTTCAC--AATGAAC-ATA------------------------AATTGAT--TA--CAAGTCTT--ATTTT-ctagaagcaacaggcagaagggaatgttggaagggatgaagttacgcatcccaatcgagtgtacagaagggtcctgaaatatggagggataaaca
gi|14 : aagggtcgaagatatggcgggatataaataaatgtccacccacagcttatatttat--------TT-AT--AATGTAAAAA------------CT---G-A--AACTAAATAC-ACGGAGTTCG---T---AAAA-AGT----ATTT---TTACA----TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-
gi|16 : actaaagtaaaaaAATAGAT--ATCCACCCACTGGTT-GT--------------------------ATTTAT--TAGATAAGT
gi|17 : agatataAGAAGGATCCCTATCGAGTGGGGCCCTGGtcatatg
gi|18 : aaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCagaagcagaagggaatgtt
gi|2 : cTC-GTA------------------------ATTAAAT--TA-GCAAGTCTTCTATTTT-GGTTCTTGCAG-AGTGAAG---------------------G-------------------GT-TTGGCTTTT-GTTGTTGA-----------------TTG----TT-TG-T-GT-----------TGTTGTTT---GGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGGA-TACT-CCTCTA-AA-ATGC---AACT-TC---CAGTCAT--CACTCA---TT-CTAGGACAA-CG---ACC-TACGCTTCGAATTTACT------GTT------TTACCTGATAG-AGACTT------CGG--C-GGT----TGT--------T--CTTT--------TT-ATTCAA-GTAAAAATATTAAGTAAACTT---GAA--AACTAAATAC-ACAGAGGTCG---T---AAAA-AGC-----TTG---TTACG-----T-TTTC--TTC-TTTAA-TTAAAGCTTATC-AAC-A-TTTT--AAATGTGCAA-AA-TTTCGAT-CACATTGTTC-GACG-GCATA-ATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGGTGTCTC
gi|3 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttAATAGAT--GTCCACCCACTGCTT-GTA------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGAG-TA-T-TCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACC-TCCGCTTGGAG-----------------------------------ACTT------TGA--C-TGT----CAC--------TAAATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATTACAT---TTGTTTA--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTT-GATG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTCAGG----TGTTTCa
gi|4 : T--ATTTT-G-TTC---AAG-AGTGAAA---------------------GGGTTTCGTTTACTTACAAGTC-TTA--TTTC-GTTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTTT-----------TGTTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAGAG-----T------ATTACATG-TTACCTGATAG-AGATTT------CGA--C-TGT----CAC--------TAGAGTAAAAA----TT-AT--AATGTAAAAA------------TT---A-A--AACTAAATAC-ACAGAGGTCGTAA------AA-AGC----ATCT---TTACAT---GT-TTTC--TCCTTTTAA-TT-AAGCTTATCTAAC-A-TTCTTAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC
gi|5 : A------------------------AATCAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTTTGTTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTGT-----------TGTTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT-TCTCTA-AA-AT---TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACT---CGCTTGG---------------------------------G-AGACTT------TGA--C-TGT----CAC--------TAGATTT--------TTTAT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGC----ATCTGAATCACAT---TT-GTTT--ATCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AAATTTCCATCCAC-TTGTTTTGATG-CCATA-ATGGAATGCTTA-GTCTTT-CCGTCT-TGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtg
gi|6 : CATAACACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTTAGAG-----TTATACTACTG-----TTATCTGAGAGCAGACTTTATATTCGAAACATGTTCAGCGG--------AAGATATAACAAAACTT-AT--AATGTAAAAA------------TTAAAA-A--AACT-AATACTACAGAGGTCGT--T---AAAAGAGCACTAATAT---AAACATAGATT-TTGCATTTCGTTTAA--T-AAGCTTATCTAACAA-CTTTAAA
gi|8 : ggAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTGTTGATTTTTTGTTGTTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAG
gi|9 : gaaagggtttcgtaaattaattacTTCCATCCAC-TTGTTC-GACGGCCATA-ATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGG
blockSeqs : AA C A . . T . GA CT . G TTG . GGGTTTCGTTTACTTACAAG . GC T CCG G G . G TGATTTTTTGT . GA G C . . . GC G . AA ACC C C C CTT C TTATACTACTG C T C G TATATT AA A TCAGCGGAAGATATAACAAAAC T TC TATTAAGTAAAC AAAA . T TAATTAT G ACTAATAT TAGAT G AT T . A A . A . A A T G . G C T G C T A G . T AA A G AAGG
blockSeqs : . C G . . T . G . . . . . G . . . . G . . . . . . . C . . . C G . G . C T C C . TTTACTGTT C T . G . . . CACTAGAGTAAAAA . . . GA . . TAATTAT . ATCTGAA TT . . T . . . . T . . . . . . T . . . T A C . . T A . . .
blockSeqs : . . C . . A . . . . . . . G . . . . G . . . . . . . . . . . C G . A . C C C C . TATTACATG T G . G . . . CACTAAATTT . . . G . . TAA . ATCTGAA TG . . T . . . . A . . . . . . T . . . T T C . . G A . .
blockSeqs : . . C . . . . . . . G . . . . . . . . . . . . . . . . C G . G . C T C C . . . . . G . . . CACTAGATTT . . . G . . TT . ATTT TT . . T . . . . A . . . . . . T . . . C A C . . T A . .
blockSeqs : . C . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TGTTCTTT . . . A . . T . ATCT T . . G . . . . . . . . . T . . . C A . . . T A . .
blockSeqs : . . . G . . T . TTG . . . . . . . G . . . . T . . . . . . .
blockSeqs : .
blockSeqCons : ************************ ** ** G**************************************** *** C** ** C** TTTACTG************** CGCTAGATTT******************** ** ATCTGAA**** TT*** A**
originalCons : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA-ACAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG-----T------ATT------TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGC----ATCT---TTACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
finalCons : AATAGAT--GTCCACCCACTGNTC-GTA------------------------AATNAAT--TA--CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAAG----------------------------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-ATC--TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAGTTTACTG--------------TTACCTGATAG-AGACTT------CGA--C-TGTCGCTAGATTT--------------------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGCATCTGAA----TTACATT---T-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAA-AA-TTTCCATCCAC-TTGTTC-GACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGGA--C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA
Alignments
lowQualScore : 11 33333333333333 222222222222 111 111 99999999999999999999999999999999999999999 111 33333333333 111 1 111 11 111 111 55555555555555555 111111 444444444444444444444444444444 222222222222 11111 4444444 222 22222 1 2222
lowQualScore : 33 2 77777777777777 999999999999 1 888 77 5 6 111 8 88888888888888888888888888888888888888888 6 99 6 111 2 6 6 6 11111111111 111 99 6 3 6 6 6 111 1 99 00 111 1 3 6 555 6 00000000000000000 1 3 6 2 999999 99 6 999999999999999999999999999999 5 77 999999999999 00000 77 5 3333333 5 1 888 5 77 33333 5 77 1 5 5 5 6 3 8 8 6 6 6 6 1 5 5 5 4 0 2 4 5 5 1 555 5 1 0 4444
lowQualScore : .. . .............. ............ . ... .. . . ... . ......................................... . .. . ... . . . . ........... ... .. . . . . . ... . .. .. ... . . . ... . ................. . . . . ...... .. . .............................. . .. ............ ..... .. . ....... . . ... . .. ..... . .. . . . . . . . . . . . . . . . . . . . . . . . ... . . . ....
lowQualScore : 88 5 77777777777777 333333333333 0 333 99 7 7 777 0 33333333333333333333333333333333333333333 7 22 7 777 5 7 7 7 77777777777 777 22 7 3 7 7 7 777 0 22 88 777 0 7 7 888 7 88888888888888888 0 0 7 5 222222 22 7 999999999999999999999999999999 7 99 333333333333 33333 99 7 0000000 7 4 000 7 99 33333 7 99 4 7 7 7 7 5 0 0 7 7 7 7 3 7 7 7 0 9 8 3 7 7 4 999 7 4 8 7777
consensus : AATAGAT--GTCCACCCACTGN-------------TCGTA------------AATNAATTA---CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG--T-T----TAC-TG--TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGCATCTGAAT-T--ACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGC-AA-AATTTCCATCCAC-TTG-TTCGACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
Reference ( family-786 ) : AATAGAT--GTCCACCCACTGN-------------TCGTA------------AATNAATTA---CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGGA-TA-T-CCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTGGAG--T-T----TAC-TG--TTACCTGATAG-AGACTT------CGA--C-TGT----CGC--------TAGATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAAT---AAAA-AGCATCTGAAT-T--ACAT---TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGC-AA-AATTTCCATCCAC-TTG-TTCGACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTAACTCNACCCTTCCGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGGGTCCCAATCGAGTGGGACCCAGGAA--TGTTTC
gi|1 : AATAGAT--GTCCACCCACTGTTTTGTATTATAATTCATAGGTTCCATATGGAATAAATCATAACAAGTCTT--ATTTTTG-TTT---AAGTAGTGAAAGGTTCGTCAAATTAATTACAAG-------------------TCATTA--TTTT-GTTCTT-AAGGAGTGAAAG---GGTTTGCG-TTTGTG-TTAT-----------TTTTTTTTTTTGGGTGGATGCATATCTAAAGTGAC-TTAAA--ATAGGA--A-TCCCTCTATAACAT-CGTAAACTATTCAACAGTCATA-CACATA---TCTCTAGGACAA-CG---ACC-TCCGCTTGGAGAAT-T----CACATG--TTACCTGATAG-A-ATTT------CGA--C-TGT----CGCCTCAACAGTAAA--A--------TT-AT--AATGT-AAAA------------TT---G-AAGAACTAAATAC-AAACAAGTCG---T---AAAA-AGCATT----T-T--ACA-----T-TTTC--TTCTTTTAATTT-AAGCTTAT-TAAC-ATTTTTAAATATGTGC-AATAATTTCCATCCAC-TTG-TTCGACG-CC-TATATAGAATGCTGA-GTC-TT-CC-TCTTTGAGACGGAAGGCTGAGAAGACCTT-TAACTCTACCCTTCCGAGACAAT-CAGAGTGG-ACC-AGAATGATGATTCCGGGAATGAG-AGGGT-CCAATCGAGT-GGACC
gi|10 : gccccactcgattggacacttctagaagtcagaagggaatgtggaagtagcaagtactgcacctcaatcagaaggtctaaataggatgatatgaGCTGA-GTC-TT-CCGTCTCTGACACGGAAGGCTGAGAAGGCCTTCTAACTCTACCCTTCAGAGACAAT-C-GAGTGG-A-C-GGAATGATGATTCC-GGAATGAGAAGAGTCCCAATGGAATGGTCCACAGGAA--TATTTC
gi|11 : AGAAGGGTCCCAATCGAGTGGGATCCa
gi|12 : aGAAGGGTCCCAATCGAGTGGGATCCagaagcagacaggcagaagggaatgttggaagggaatgaagttacgcatcccaatcgagtgtacagaagggtctgaaatatggagggataaaat
gi|13 : TAGATAAGTTCAC--AATGA-------------ACATA------------AATTGATTA---CAAGTCTT--ATTTT-ctagaagcaacaggcagaagggaatgttggaagggatgaagttacgcatcccaatcgagtgtacagaagggtcctgaaatatggagggataaaca
gi|14 : aagggtcgaagatatggcgggatataaataaatgtccacccacagcttatatttat--------TT-AT--AATGTAAAAA------------CT---G-A--AACTAAATAC-ACGGAGTTCG---T---AAAA-AGTATTT---T-T--ACA----TT-TTTC--TTCTTTTAA-TT-AAGCTCATCTAAC-
gi|16 : actaaagtaaaaaAATAGAT--ATCCACCCACTGG-------------TTGTA------------
gi|17 : agatataAGAAGGATCCCTATCGAGTGGGGCCCTGGtttattagataagttcatatg
gi|18 : aaATGGAAGGCTGAGAAGGCCTTCCAAGTTAACCCTTCagaagcagaagggaatgtt
gi|2 : c-------------TCGTA------------ATTAAATTAG--CAAGTCTTCTATTTT-GGTTCTTGCAG-AGTGAAG---------------------G-------------------GT-TTGGCTTTT-GTTGTTGA-----------------TTG----TT-TG-T-GT-----------TGTTGTTT---GGGTGGATGCATATCTAAGCTGACTTTAAA--ATAGGA-TACT-CCTCTA-AA-ATGC---AACT-TC---CAGTCAT--CACTCA---TT-CTAGGACAA-CG---ACC-TACGCTTCGAA--T-T----TAC-TGTTTTACCTGATAG-AGACTT------CGG--C-GGT----TGT--------T--CTTT--------TT-ATTCAA-GTAAAAATATTAAGTAAACTT---GAA--AACTAAATAC-ACAGAGGTCG---T---AAAA-AGC--TTG--T-T--ACG-----T-TTTC--TTC-TTTAA-TTAAAGCTTATC-AAC-A-TTTT--AAATGTGC-AA-AATTTCGAT-CACATTG-TTCGACG-GCATA-ATGGAA-GCTTGCGTC-TT-CCGTCTTTGAG-C-GAAGGCTGAGAAGG-CTTCTAAATCTACCCTTCCGAGACAAT-C-GAG--------GGAAT-ATGATTCC-GG-ATGAG-AGGGT-CCAATCGAGTGGGACCCAGTAAGGTGTCTC
gi|3 : tctagaaagtgctaaataattaatggagaggactataataaatgttcaccaagctggtttctttttagggtaatttcgaacttcacacatagtttatggagtaatattctcaagtcttttttgtttaaggtgcaaagggttAATAGAT--GTCCACCCACTGC-------------TTGTA------------AATCAATTA---CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAG---GGTTTGCG-TTT-TG-TTGT-----------TGTTGTTG---GGGTGGATGCCTATCTAAAGTGACTTTAAA--ATAGAG-TA-T-TCTCTA-AA-AT-C-TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACC-TCCGCTTGGAG-------------------------------ACTT------TGA--C-TGT----CAC--------TAAATTT--------TT-AT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGCATCTGAAT-T--ACAT---TTGTTTA--TTCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGC-AA-AATTTCCATCCAC-TTG-TTTGATG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTTTGAGACGGGAGGCTGAGAAGGCCTTCTAACTCAACCCTTCCGAGACAAT-C-GAGTGG-A-C-AGAATGATGATTCC-GGAATGAGAAGAGTCCCAATCAAGTGGGACTCAGG----TGTTTCa
gi|4 : T--ATTTT-G-TTC---AAG-AGTGAAA---------------------GGGTTTCGTTTACTTACAAGTC-TTA--TTTC-GTTCTTGAAAGAGTGAAAGCCGGGTTTGCG-TTT-TG-GTTT-----------TGTTGTTG---GGGTGGATGCCTATTTAAAGTGACTTTAAA--ATATGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAGTCATA-CACATA---TTCCTAGGACAACCGC--ACC-TCCGCTTAGAG--TAT----TACATG--TTACCTGATAG-AGATTT------CGA--C-TGT----CAC--------TAGAGTAAAAA----TT-AT--AATGTAAAAA------------TT---A-A--AACTAAATAC-ACAGAGGTCGTAA------AA-AGCATCT---T-T--ACAT---GT-TTTC--TCCTTTTAA-TT-AAGCTTATCTAAC-A-TTCTTAAAATGTGC-AA-AATTTCCATCCAC-TTG-TTCGACG-CCATA-ATGGAATGCTTA-GTC-TT-CCGTCTCTGAGACGGAAGGCTGAGAAGGCCTTCTA--------------AGACAAT-C-GAGGGG-A-C-GGAATGATGATTCT-GGAATGAGAAGGGACCCGATCGAGTGGGACCC
gi|5 : A------------AATCAATTA---CAAGTCTT--ATTTT-G-TTC---AAG-AGTGAAA---------------------G-------------------TC-TTA--TTTTTGTTCTTGAAAGAGTGAAAG---G-TTTGCGGTTT-TGGTTGT-----------TGTTGTTG---GGGTGGATGCCTATCATAAGTGACTTTAAAGAATAGAAGTACT-TCTCTA-AA-AT---TAAACTGTC--ACAGTCATG-CACATA---TTCCTAGGATAACCGC--ACT---CGCTTGG-----------------------------G-AGACTT------TGA--C-TGT----CAC--------TAGATTT--------TTTAT--AATGTAAAAA------------TT---G-A--AACTAAATAC-ACAGAGGTCGTAATTATAAAA-AGCATCTGAAT-C--ACAT---TT-GTTT--ATCTTTTAA-TT-AAGCTCATCTAAC-A-TTTTAAAAATGTGCAAA-AATTTCCATCCAC-TTGTTTTGATG-CCATA-ATGGAATGCTTA-GTCTTT-CCGTCT-TGAGACGGGAGGCTGAGAAGCGCTTCTAACTCAACCCTT-CGAGACACTGC-G-GTGGAA-CAAGAATGATGATTCCGGGAATGAGAAGAGTCCCAATCAATGGGGACtg
gi|6 : CATAACACATAACCTTCCTAGGA-GACCGCTTACCCTCCGCTTAGAG--T-TATACTAC-TG--TTATCTGAGAGCAGACTTTATATTCGAAACATGTTCAGCGG--------AAGATATAACAAAACTT-AT--AATGTAAAAA------------TTAAAA-A--AACT-AATACTACAGAGGTCGT--T---AAAAGAGCA-CT-AATATAAACATAGATT-TTGCATTTCGTTTAA--T-AAGCTTATCTAACAA-CTTTAAA
gi|8 : gg-------------TCGTA------------AATTAATTA---CAAGTCTT--ATTTT-G-TTC---
gi|8 : gaaagggttAA---------------------G-------------------TC-TTA--TTTT-GTTCTTGAAAGAGTGAAAT---GGTTTGCG-TTT-TG-TTGTTGATTTTTTGTTGTTGTTG---GGGTGGGTGCCTATTTAAAGTGACTTTAAA--ATGGGA-TA-T-CTTCTA-AA-AT-C-TAAACTGTC--ACAGttgaaagagtgaaatggtttgcgttttgttgttgattttttgttgttgttggggtgggtgcctatttaaagtgactttaaaatgggatatcttctaaaatctaaactgtcacag
gi|9 : gaaagggtttcgtaaattaattacTTCCATCCAC-TTG-TTCGACGGCCATA-ATGGAATGCTGA-GTC-TTGCCGTCTCTGAGACGG-------------CCTTCTAACTCTATCCTTC-GAGACAAT-C-GAATGG-A-C-GGAATGA-GAT-CC-GGAATGAGAAGGGTCCCAACCGAGTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGCTCCACTCGATGGGAGATCCTTCTAGAAGCAGAGATGTTGGAAGGTCAGAAGTTACGCACCTCAATCGAGTGTTACAGAAGGGTCCGAAATATGGAGGATATAAATAGAAATCACCCACTGTTTGTATATTTATTAGATAAAGTTCATTATGCGAGTAAATC
Unaligned ( gi|15 ): TGTTAAAGAGATGGTAGAAATGTTACGCGCCCACATCGTAGTTGTACAGAAGGGTCGAAATACTGGAGGGATAA