lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 444444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 99999999999999999999999999999999999999999 2222222 111 2222222222 111111 111 111111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 1 4444444444444444 1111 666666666 1111 55555555555555555555 1 222 11 1 3333 111 555555555555555555555555 222 1111 11 11111 1 11111111 22222 11 33 11111 22222 1 11 1 1 1
lowQualScore : 1 4 333333 6 7 9 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 33333333333333333333333333333333333333333 0 8 0 8 8 0 2222222 777 99 3333333333 666 99 5 6 1 666666 6 3 333 66 444444444 66 4 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66 777 222222 4 9999 8 66 4 4 4 55 3 1111111111111111 55 7777 3 3 88 000000000 5 44 555 4444 3 6 3 3 55 3 55 77777 88888888888888888888 0 8 0 3 333 33 6 3 8888 1 111 222222222222222222222222 444 99 6666 6 77 44444 1 6 1 77777777 33333 6 8 11 6 6 88 5 22222 77 5 00000 0 8 11 6 8 8 8 8 8 88 8 8 6 6 8 6 8 88 8 0 3
lowQualScore : . . ...... . . . .................................................................................. . ......................................... . . . . . . ....... ... .. .......... ... .. . . . ...... . . ... .. ......... .. . .......................................................................................................................................................................................... .. ... ...... . .... . .. . . . .. . ................ .. .... . . .. ......... . .. ... .... . . . . .. . .. ..... .................... . . . . ... .. . . .... . ... ........................ ... .. .... . .. ..... . . . ........ ..... . . .. . . .. . ..... .. . ..... . . .. . . . . . . .. . . . . . . . .. . . .
lowQualScore : 0 7 333333 0 3 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 00000000000000000000000000000000000000000 8 0 8 0 0 8 0000000 333 22 3333333333 888 66 7 0 7 444444 0 2 888 99 111111111 99 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 222 111111 4 3333 1 99 4 0 0 55 6 1111111111111111 00 9999 3 3 11 222222222 0 66 888 8888 3 7 3 3 00 6 77 00000 00000000000000000000 8 0 8 3 333 00 7 3 0000 0 666 000000000000000000000000 333 22 0000 7 88 33333 4 7 7 88888888 33333 7 0 00 0 4 00 7 44444 99 7 00000 8 0 00 0 0 0 0 0 0 88 0 0 0 4 0 0 0 88 0 6 8
consensus : NCCCTCCNTCTAA----ATTAATTAGGTTATTAT-TGTAT-ATATA---TGCA-TT------TGCAAA-----NTAAAAGAAT----AA-AAACTTGG-AA-AA-TAA-CCAA-ATGC-ATTGAAA----TTAATTA-----ATTAATTGAGAATAGC--CATCA-TATGCAT-AATAAATG-C-ACAAGC---A--CTGTGC-TA--TGTTT--C--AN-T-T-T-TTGCATTTC-ATCA-GCCAATAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC--------------ACCCGT--G---C-------GAT--AT--TA-TA-TCA-A-TA-GCGG-TATT--CTT----T-AT--A---ATAC-ATGTT--C-AGT-----TT-TAATTTTAT-GTG-AT-------AAA---T-----------TG-AAC--------------A-ATGAATGTAATCA--TCA--GGCAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCATCATT---GAC----C---G--GGACCAA-T-GTAATGGGG-ACGTCCAATT-CG-TCTTCTGTC----CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGA--T--GATAC---T-CA----------C-TCATGTTGTGAAG-CGATAC-GG---TAGCGANCG-TGACC-TTACGTTGGTTG-CTATCGCT-AT--ATCG-G--GGCG-GCAGTC--TCATT--CTGTACTAACAGAT-GATA-T-CTCTGC-----CATCAAAATAATCTAA-TGGCT---T-T--CAG-----TA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT---TGT--CAG-TA-----TATCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( gi|4 ) : TCTCTCCTTCTTC----ATTGATTAGGTTATTAT-TACAT-GTAT----TG---TT------TGCAAA-----ATAAAGGAAT----AATAAACTTGG-AA-AC-TAA-CCAATATGC-ATTGAAA----TTGATCA-----AC--ATTGAAAATATCTCCATCAATATGCAT-AATAAATG-C-ACAAGC---A--TTGTTC-TA--TGTTT--C--AT-T-T-T-TTGCATTTT-ATCA-GCCGATAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC--------------A-----------T-------AATCAAT--TA-TA-TCA-A-TA-GCGG-TATT--CTT----TGA---A---ATAC-ATGTT--C-AGT-----TT-TAATTTTAT-GTG-AT-------AAT---T-----------TG-AA---------------A-------------A--TCA--GGCAAA-----TC-TTC-CATTGAGTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCATCAAT---GA-----A---G--GGACCAA-T-TTAATGGGG-ACGTCCAATT-CA-TCCTCTGCCT---CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGA--T--GATAC---T-CACTCTCACCACC-TCATGTTGTGAAG-CGATAC-GG---TAGTGAGCG-TGACCATTATATTGGTTG-CTA-CACTGAT--ATCG-G--GGCATGCAGTC--ACATT--CTGTACTAACAAAA-GATA-T-ATCTGC-----CATCAAAATAATCTAA-TGACT---TGT--CAA-----TA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT---TGT--CAA-TA-----TAGCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : CTCTCATTCTAA----ATTAATTAGGTTCTT-----TAT-ATAT----TG---TTATAAAATGCAAATGCAAATAAAAGGAT----AA--AACTTGG-AA-AA-AAAACCAA-ATGC-ATTGAA-------GATC---------------AAA-------------ATGCAT-AA-AAATGTC-ACA-GC---A--CTGTT--TA--TGTTT--C--ATGT-T-T-TTGC-TTTC-AGCA-GCCAATA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC--------------A-----------C-------CTGCGGTTGTA-TA-TCATA-TA--CGG-TATT--TT-----------A---ATAC-A-GTT--C-AAT-----TT-TGATTTAAT-GTC-AT-------AAA---T--------------GA---------------C-------------A--TC---GGCAA---------------------AGT--CTTA-TT-T-TG-TG----GAC-ACCAT--ATTTGGAC----A---G--GGAACAA-T-GTAACGG----CGTCAAATTCCATTCCTCT-CGTTAACGGGCA--TTT----TAC------------------GG-AA--TT-CCA-TGA--T--GATA------------------C-TCATGTTGTGAAG-CGATAC-GGGTATAG-AACCG-TGAC--TTTTGTTGGTT
gi|8 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctcccccccccccccccccccccccCCCCCCATCTAA----ATTAATTAGGTTATTATATATTT-TTATAAAATGCAATC------TGCAAA-----TAAAAGGAAT----AA-AAACTTGG-AA-AAATAA-CCAA-ATGC-ATTGAAA----TTAATTA-----ATTAATTGAGAATAGC--CATCAATATGCAC-AATAAATG-C-ACAAGC---A--CTGTGC-TA--TGTTT--CA-AT-T-TGT-TTGCATTTC-ATCA-GCAAATAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACCACCCGTGCGTTGATA-----------T-------GAT--AT--TA-TA-TCA-A-TA-GCGG----------------------------------------T-----TT-TAATTGTAT-GTG-AT-------AAA---T-----------TG-AAC--------------A-------------AACTTAGTGGTAAG-----TC-TTC-ttttaacgtacacaagattgattgtcctacactgatctactt
gi|3 : acgtttttgttaaaatgatagcccccCCCTCCCCCATCGTAAATTAAT-AGGTT--TAT-T-CATAGTAT----TG---GT------T-TAAA-----ATGCAATAATTGCAAATAAGA--GG-AATAA-TAA-C-----TGCCATTAAAAGATTTCAATCA-----ATTAATTGAGGATATC--CATCATTATGCAT-AATAAATG-C-ACAAGC---AGCTCGTGCTTAACTGTTTTCC--AA-T-T-T-TTGCATTTCAATCA-GCCAATATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC--------------ACCCGTATGCGTT-------GATTAAT--TACTA-TCA-ATTACGCGA-GATT--CTTAATATCAT--A---ATAC-ATGTTCAC-AGT-----TT-TAATTTTAT-GTG-ATAAACATGAAC---TAAA--------TG-AATGT------------A-------------A--TCT--CACTAACTTCCCC-TTCGCGTTGA-TAGTCACTTATTTCT-TG-TGGT--GAC-ACCATTCATTC-GACGGC-C---G--GGATCAA-T-GTAATGGGGCACGTCCAATT-CG-TCTTT--CCT-----GGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAA--TCGCCA
gi|2 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccTATTGT-TGTAT-AAATA---TGCA-TT------TGCAAA------TAAAAGGAT----AA-------------AT-TAA-C-----TGC-AT-AAAA----TTAATTATATTTAA--TTTGAGGA-AGC-CCATTA-T-TGCATGAATAAATG-CTACAAGCTCAG--CTGTGT-TA--TGTTT--TCAAT-G-T-TGTTGCATTTC-ATCAAGCCAATAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCGTGCGTTG-A-----------T-------ATTCTAT---A-TT-TCA-A----GCGAATATT--CGT----TAATATA---ATAC-TTGTT--CCAGT-----TT-TAATTT-AT-GTG-AT-------AAT---TGAACAATTGAATGTAA---------------G-------------A--TCA--TCAAAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCATCATT---GA-----C---GCCGGACCAAAT-GTAATGGGA-ACG-CCAATT-CG-TCT-----CT---TAGGCA--TT----ATACAGT-CCGCCAGTCATCG-GA-AA--GC-CC--TGATCT--GATGC---G-CA---TTGCGATTGGTATGTTG-GATGTCTA-AC-GG---TCACAATCGATG--CGTTACAATGAT---CTATCAT--AT--ATTG-G--A----GCAGTC--TCATT--CTTAACTAACAAGATGATA-TCCTCTGC-----CATCAAAATAATCTAA-TGGCT---T-TAACAG-----TA-TATCAT-TTGGTATTATCAATATACC--AATATATC--AAT--TCTA---CGCG---TGT--AAA-TA-----TGGcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagta---TT------TGCAAA-----TAAAAGGAAT----AA-AATCATGGAAA-AA-TAA-CC-ATATGA-ATTGAAtctcctcttactcatgatttattcgttaagacagcgtta
gi|22 : aatgcaaGA-AA-AA-TAA-CCAA-ATGC-ATTGAAA----TTAAATA-----ATTAATTGAGAATA
gi|6 : tgATGCAT-AATAAATG-C-ACAAGC---A--CTGTGT-TA--TGTTT--C--AA-T-T-T-TTGCATTTC-ATCA-GCCAATAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC--------------ACCCGTACGT--T-------GATATAT--TA-GA-TCA-A-TA-GCGA-TATT--CTT------A---AT--ATAT-ATGTT--C-AGT-----TT-TAATTTTAT-GTG-AT-------AAA---T-----------TG-AAC--------------AAATGAATGTAATCA--TCA--GGCAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCATCATT---GAC----AGCCG--GGACCAA-T-GTAATGGGG-ACGTGCAATT-CG-TCTTCT---------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG-GACGTC-CAATT
gi|10 : TTC-T---TATTT--T--AG-TAT-C-TTGCATTTT-ATCA-GACAATAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC--------------ACCCGTGCGT--T-------GAT--ATGATA-TA-TCA-G-TA-GCAG-TATT--CTT----TGA---A---ACACAATAAT--T-AGTAATGGTT-TAATTCTcgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcgatacgagtacattctcattctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|7 : tcacagctaaacttttcataggtctATTTC-ATCT-GCCAATAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC--------------A-----------C-----------------------CC-G-T--GCGG-TATT--CTT----TGA---A---ATAC-ATGTT--C-AGT-----TT-TAATTTTAT-GTG-AT-------AAA---T-----------TG-AAC--------------AAATGAATGTAATCA--TCA--GGCAAA-----TC-TTC-CGTTGACTAGT--CTTA-TTCT-TG-TAGT--GAC-AACGTCATT---GA-----C---G--TGACCAA-T-GTAATTGGG-ACGTCCAACT-CG-TCCTCTGTC---------A--CTT---AT---AT-CCGCCAGT-AT-G-GG-A-------------------ATAC---T-CA----------G-TCATGTTGTTAAG-CGATACGGG---TAGTGAGCG-TGACT-TTATGTTGGATGTCTA-
gi|1 : AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC--------------A-----------CCCGTGCGAGTGAA----A-TACTCC-A-TC--CGA-TATTTGCTT----TTATT-ATCTATAC-ATGTT--C-AGT-----TTGTATCTTTATTGTGTAT-------AGTGAAT-----------TG-AACAACTCATGAATGTTATC-----------A--TCA--GGCAAA-----TC-TTC-CG-TGATTAGT--CTTA-TTCTGTG-TGGT--GAC-ACCATCATT---GACGGGCC---G--GGACCAA---TTAAT-GGG-ACGTCCAATT-TG-TCTTCT---T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AA--TC-CCAATGA--T--Gacctcacaattgattgattatttaattattgttttacgtaatga
gi|12 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcga---ATAG-ATTTT--C-AGT-----TT-AAACTTTAT-GTG-AG-------AAA---T-----------TG-AAC--------------AAATGAATGTAATCA--TCA--GGCAAT-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGTCAGAC-ACCATC-AT-------------------------------TGGGG-ACGTCCAATT-CG-TCCTCTGTCA---CGGGCA--TTT---ATATAGT-CCACCAcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|14 : tAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-CGGT--GAC-ACCATCATT---GA-----C---G--GGACCAA-TGTTAATGGGG-ACGTCCAATT-CG-TCTTTT---------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-
gi|17 : A-TTCT-TG-TGGT--GAC-ACCATCATT---GA-----C---G--GGATCAA-T-GTAATGGGA-ACGTCCCATT-CG-TCTTCT---------GGCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGA--
gi|15 : T-TG-TGGT--GAC-ACCATTATT---GA-----C---G--GGACCAA-T-GTAACAG----CATCAAATT-CG-TCCTCTGTTA---CGGGCA--TTT---ATAC----------------G-GG-AA--TT-CCATTGA--T--GATA------------------C-TCATGTTGTGAAG-CGATA
gi|16 : AC-ACCATCATT---GA-----C---G--GGACTAA-A-GTAATGGGA-ACGTCCAATT-CG-CCCTCTGTCA---CGGGGA--ATT---ATAC----------------G-GG-AA--TC-TCATTGA--T--GATA------------------C-TCATGTTGTGAAG-CGATA
gi|6 : AATGGGG-ACGTCCAATT-CG-TCTTCTG---------GCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGA--TGCGATACGAGTACATTCTCA
gi|23 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaa-AT-G-GG-AA--TC-CCATTGA--T--GATAC---T-CAttctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|1 : TG-CTA-TACTTATCTATTATGTTGACGCGCAGTTCTGCATT--CTGTACTAACAGAT-GATA-T--------------------CAATCTAA-TG-CT---TTT--CAG-----TA-TATCAT-TAG--ATTGTCAATATACCAAAAT--ATCAAtgctagaaagcgaca
gi|18 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctg-CTATCGCT-AT--ATCG-G--AGCA----GTC--TCATT--CTGTACTAACAGAT-GATA-T-ATCTGC-----CATCAAAATAATtccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|9 : gtctaacgtcacaattgatgcgtctactgtgatTA-TGCTAA---ATCG-G--GGCA----GTC--TCATT--CTGTACTAACAGAT-GATA-T-CTCTGC-----CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAAT
gi|6 : cgtctactctgatctatGAT--A-CG-A--G---TACATTC--TCATT--CTGTACTAACAGGT-GATA-T-CTCTGC-----TATCAAAATAATCTAA-TGGCT---TGT--CAG-----TA-atccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
gi|3 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaaatggggacgtccaattcgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcGCAGTC--TCATTTGCTGTACT--CAACA-GATGCT-ATCTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAAG----TAATATCATCTAG--AT-GTCAATATACCAA
gi|13 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgaTGC-----CATCAAA-CAATCTAA-TGGCT---T-T--CAA-----TA-TACCAT-TAG--ATTCTCAATATA-CGAAATtaactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|6 : ATCAAAATAATCTAA-TGGCT---TGT--CAG-TA-----aatccattcacgatgtagataatcagtctcctcttctcattattctatcgttaaacagctc
gi|2 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaaatggggacgtccaattcgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcgatacgagtacattctcattctgtactaacaggtgatatctctgctATCAAAATAATCTAA-TGGCT---T-TAACAG-TA-----TATCAT-TTGGTATTATCAATATACCAA-TA-TA-T-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGC
gi|3 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccATCAAAAAATTCTAAATGGCTATTTTT--CAAGTAA----TATCATCTAG--AT-GTCAATATACCAATAACTA-TTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTgtta
gi|9 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcATCAAAATAATCTAA-TGGCT---TGT--CAA-TACTGTATACCAT-TAC--ATAGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTG
gi|13 : cgtctactctgatctattatgctaaatcggggcagtctcattctgtactaacagatgatatctctgccATCAAA-CAATCTAA-TGGCT---T-T--CAA-TA-----TACCAT-TAG--ATTCTCAATATAC-GA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCTctagg
gi|1 : tgccAATCTAA-TG-CT---TTT--CAG-TA-----TATCAT-TAG--ATTGTCAATATACCAA-AA-TA-T-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 4444444444444444 111 22222222 111 11111 111 1111 111 3333333333333333333333 1 11111 111 11 11 11 11111 11 222222 111 111111111 666666666666666666666666666666666666666666666666666666666666666666666666 11111 33333333333 11111 1111 2222222 55555555 11 44444444444444444444444444 1 111 1 1 11 1111 1111 4444 1111 2222222222222222 11 11 11111111 22222 1 1
lowQualScore : 1 8 8 0 1111111111111111 8 111 00000000 777 66666 2 99 6 777 5 5 5 5 9999 5 2222 6666 333 5 5 1 5555555555555555555555 1 0 5 5 77 22222 5 000 5 66 11 66 66 11 11111 8 4 00 66 555555 2 1 222 66 111111111 66 4 66 555555555555555555555555555555555555555555555555555555555555555555555555 4 55 4 00000 4 4 4 777 4 00000000000 66 1 00000 4 8 3 66 4 3 3 55 3 3 1111 9999999 3 3 3 44 00000000 44 555 4444 3 6 3 3 44 3 33 22 88888888888888888888888888 1 5 0 0 777 0 1 0 3 44 111 5555 7777 8 1 1111 5 5 77 5 5 1111 5 6 9999999999999999 6 8 11 6 33 55 6 77777777 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . ................ . ... ........ ... ..... . .. . ... . . . . .... . .... .... ... . . . ...................... . . . . .. ..... . ... . .. .. .. .. .. ..... . . .. .. ...... . . ... .. ......... .. . .. ........................................................................ . .. . ..... . . . ... . ........... .. . ..... . . . .. . . . .. . . .... ....... . . . .. ........ .. ... .... . . . . .. . .. .. .......................... . . . . ... . . . . .. ... .... .... . . .... . . .. . . .... . . ................ . . .. . .. .. . ........ ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 6666666666666666 0 444 22222222 555 77777 8 22 7 333 7 7 7 7 4444 7 1111 7777 777 7 7 4 7777777777777777777777 4 1 7 7 99 33333 7 444 7 99 99 00 99 99 11111 9 4 66 11 666666 7 9 222 11 666666666 11 4 11 000000000000000000000000000000000000000000000000000000000000000000000000 0 55 0 00000 0 4 4 888 4 44444444444 11 1 00000 0 0 4 11 0 6 6 00 3 3 7777 6666666 3 3 1 22 11111111 22 444 7777 1 2 1 1 66 3 66 22 22222222222222222222222222 4 7 1 0 555 5 0 0 2 22 888 7777 2222 0 4 4444 7 7 99 7 7 6666 7 7 7777777777777777 7 0 00 0 88 00 7 88888888 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCATC-TA-AATTAATTAGGT--------T----AT-TAT-TGT-ATA-TATA---TGCA-TTTGCAA---A-TAAAGG--AATAA-AA-CTTGG-AA-AA-TAA-CCAA-ATGC-ATTGAAA----TTAAT-TA-ATT--AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TGTTT--CAN-T--TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGC--------G------AT--AT--T--A-TAT--CA-A-TA-GCGG-TATT---C-T-----T--TG-TA---ATAC-ATGTT--C-AGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-T-GAATGTAA--TCATCAGGCAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCA-TCATT----GA----C-CGGGACCAA-TG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGAT--GATAC-CACT--------C----------ATGTTGTGAAG-CGATAC-GG---TAGCGANCG-TGACT-TTACGTTGGT-TG-CTATCGCT-ATATCGGGGC---CAGT-CT-CATT--CTGTACT-AACA-GATGATATC-T--CTGC-CATCAAAATAATCTAA-TGGCT----TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT---T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCTCCNTC-TA-AATTAATTAGGT--------T----AT-TAT-TGT-ATA-TATA---TGCA-TTTGCAA---ANTAAAAG--AATAA-AAACTTGG-AA-AA-TAA-CCAA-ATGC-ATTGAAA----TTAAT-TA-ATT--AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TGTTT--CAN-T--TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGC--------G------AT--AT--T--A-TAT--CA-A-TA-GCGG-TATT---C-T-----T--TA-TA---ATAC-ATGTT--C-AGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-T-GAATGTAA--TCATCAGGCAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCA-TCATT----GA----C-CGGGACCAA-TG-TAATGGGG-ACGTCCAATTC--GTCTTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGAT--GATACTCACT--------C----------ATGTTGTGAAG-CGATAC-GG---TAGCGANCG-TGACC-TTACGTTGGT-TG-CTATCGCT-ATATCGGGGCG-GCAGT-CT-CATT--CTGTACT-AACA-GATGATATC-T--CTGC-CATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : AAT----TTAATATG-ATTTTAATT-GAG-ATACTCGCT-C-CTCA-T-ATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GT-C-TGG--TCTTT--TAT-CAAAT--TTGCATCCCCCTTCGATACAATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC-ACCCG--TGC--------GAGTGAAAT--AC--T--C-CAT--C--------CGA-TATTTGCT-T-----T--TATTATCTATAC-ATGTT--C-AGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC--AACTCA-T-GAATGTTA--TCATCAGGCAAA-----TC-TTC-CG-TGATTAGT--CTTA-TTCTGTG-TGGT--GAC-ACCA-TCATT----GACGGGC-CGGGACCAA-T--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AA--TC-CCAATGAT--G
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgcc-CTAT---T-ATGTTGACGCG--CAGTTCTGCATT--CTGTACT-AACA-GATGATATC------------------AATCTAA-TGCTT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAAAATATcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatATATCAA-----TCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-TA-T-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatg--TATTT--TAG-TA-TC--TTGCAT-----TTT-AT-CA--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC-ACCCG--TGCGTT-----G------AT--ATGAT--A-TAT--CA-G-TA-GCAG-TATT---C-T-----T--TG-AA---ACACAATAAT--T-AGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct---ATAG-ATTTT--C-AGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC--A----AAT-GAATGTAA--TCATCAGGCAAT-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGTCAGAC-ACCA-TCAT-----------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTCA-CGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT---T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATAC-GA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-CGGT--GAC-ACCA-TCATT----GA------CGGGACCAA-TGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-TG-TGGT--GAC-ACCA-TTATT----GA------CGGGACCAA-TG-TAACAG----CATCAAATTC--GTCCTCT-GTTA-CGGGCA--TTT---ATAC----------------G-GG-AA--TT-CCATTGAT--GAT----ACT--------C----------ATGTTGTGAAG-CGATA
gi|16 : AC-ACCA-TCATT----GA----C--GGGACTAA-AG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTCA-CGGGGA--ATT---ATAC----------------G-GG-AA--TC-TCATTGAT--GAT----ACT--------C----------ATGTTGTGAAG-CGATA
gi|17 : A-TTCT-TG-TGGT--GAC-ACCA-TCATT----GA----C--GGGATCAA-TG-TAATGGGA-ACGTCCCATTC--GTCTTCT-G-------GCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGA
gi|18 : -CTATCGCT-ATATCGGAGC----AGT-CT-CATT--CTGTACT-AACA-GATGATATA-T--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAATC-TACAATTAATTTGGTATTCAGTAT----AT-TGT-TGT-ATA-AATA---TGCA-TTTGCAA---A-TAAAAG--GATAA-A----T---------TAA-C-----TGC-AT-AAAA----TTAAT-TATATTT-AATTTGAGGA-A---GC--CCATTA-T-------TGCATGAATAAATG-CTACAAG--CTCAG-CT-GTGT-T-A--TGTTTT-CAA-TG-TTG-TTGCAT-----TTC-AT-CAA-GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGC--------GTTG---AT--AT--TCTA-TATTTCA-A----GCGAATATT---CGT-----TAATA-TA---ATAC-TTGTT--CCAGT-----TT-TAATTT-A-TGTG-ATA---A-T-TGAAC--A----A-TTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT----GA----CGCCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GTCTCTT-A------GGCA--TT----ATACAGT-CCGCCAGTCATCG-GA-AA--GC-CC--TGATCTGATGCGCATTGCGATTGGT----------ATGTTG-GATGTCTA-AC-GG---TCACAATCGATG-CG-TTACAATGAT----CTATCA-T-ATATTGGAGC----AGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT----T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-TA-T-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA---TGCAATTTGCAA---ATAAAAGG--AATAA-AATCATGGAAA-AA-TAA-CCAT-ATGA-ATTGAAgtta
gi|22 : aGA-AA-AA-TAA-CCAA-ATGC-ATTGAAA----TTAAA-TA-ATT--AATT-GAGAATA---
gi|23 : tg-AT-G-GG-AA--TC-CCATTGAT--GAT----ACT--------C----------ATGCTAGAAAG-CGACA
gi|3 : CCCCCATCGTA-AATTAAT-AGGT--------T-------TAT-T-C-ATAGTAT----TG-G-TTTAAAATGCAATAATTGCAAATAA-GA----GG-AATAA-TAA-C-----TGCCATTAAAAGATTTCAAT-CA-ATT--AATT-GAGGATA---TC--C-ATCA-TTA-----TGCAT-AATAAATG-C-ACAAG--C---AGCTCGTGCTT-AACTGTTTTCCAA-T--TT--TTGCAT-----TTCAAT-CA--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC-ACCCGTATGCGTT-----G------ATTAAT--T--ACTAT--CA-ATTACGCGA-GATT---C-TTAATAT--CA-TA---ATAC-ATGTTCAC-AGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA----A-T-GAATGTAA--TC-TCA--CTAACTTCCCC-TTCGCGTTGA-TAGTCACTTATTTCT-TG-TGGT--GAC-ACCATTCATTCGACGG----C-CGGGATCAA-TG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAA--TCGCCA
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccct-GCAGT-CT-CATTTGCTGTACTCAACA-GATGCTATC-TACTTGCTCATCAAAAAATTCTAAATGGCTATTTT-T--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgaATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACTA-TTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTTC-TT-CATTGATTAGGT--------T----AT-TAT-TAC-ATG-TAT----TG---TTTGCAA---AATAAAGG--AATAATAAACTTGG-AA-AC-TAA-CCAATATGC-ATTGAAA----TTGAT-CA-AC----ATT-GAAAATA---TCTCC-ATCAAT-A-----TGCAT-AATAAATG-C-ACAAG--C---A-TT-GTTC-T-A--TGTTT--CAT-T--TT--TTGCAT-----TTT-AT-CA--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC-AT----------------A------ATCAAT--T--A-TAT--CA-A-TA-GCGG-TATT---C-T-----T--TG-AA---ATAC-ATGTT--C-AGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA-------------------A----ATCAGGCAAA-----TC-TTC-CATTGAGTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCA-TCAAT----GA----A--GGGACCAA-TT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCCT-CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGAT--GATACTCACT--------CTCACCACCTCATGTTGTGAAG-CGATAC-GG---TAGTGAGCG-TGACCATTATATTGGT-TG-CTA-CACTGATATCGGGGCATGCAGT-CA-CATT--CTGTACT-AACA-AAAGATATA-T--CTGC-CATCAAAATAATCTAA-TGACT----TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT---TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCTCTCATTC-TA-AATTAATTAGGT--------TCTTTATATAT-TGTTATA-AA-A---TGCA-AATGCAA---A-TAAAAG--GATAA-AA-CTTGG-AA-AA-AAAACCAA-ATGC-ATTGAAG-------------ATC--AA----------------------A---A-----TGCAT-AA-AAATGTC-ACA-G--C---A-CT-GT-T-T-A--TGTTT--CATGT--TT--TTGC-T-----TTC-AG-CA--GCCAA--TA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC-ACC----TGC--------G------GT--TG--T--A-TAT--CATA-TA--CGG-TATT---T-------------TA---ATAC-A-GTT--C-AAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA------------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-TG-TG----GAC-ACCA-T-ATTTG--GA----C-AGGGAACAA-TG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AA--TT-CCA-TGAT--GAT----ACT--------C----------ATGTTGTGAAG-CGATAC-GGGTATAG-AACCG-TGACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctccccccccccccccccccccccc-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGT-T-A--TGTTT--CAA-T--TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TAC--------GTTGAT-AT--AT--T--A-GAT--CA-A-TA-GCGA-TATT---C-T-----T--AA-T----ATAT-ATGTT--C-AGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAACA-A----A-T-GAATGTAA--TCATCAGGCAAA-----TC-TTC-CGTTGATTAGT--CTTA-TTCT-TG-TGGT--GAC-ACCA-TCATT----GACAG-C-CGGGACCAA-TG-TAATGGGG-ACGTGCAATTC--GTCTTCT--------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG-GACGTC-CAATTttttaacgtacacaagattgattgtcctacactgatctactt
gi|6 : AATGGGG-ACGTCCAATTC--GTCTTCT-G-------GCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGATGCGATACcgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcgatacgagtacattctcattctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|6 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaCATT-CT-CATT--CTGTACT-AACA-GGTGATATC-T--CTGC-TATCAAAATAATCTAA-TGGCT----TGT--CA-----GTA-gagtacattctcattctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|7 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaaatggggacgtccaattcgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcgatacgagtaAT-----TTC-AT-CT--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC-ACCCG--TGC--------G-----------------------------------G-TATT---C-T-----T--TG-AA---ATAC-ATGTT--C-AGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AAT-GAATGTAA--TCATCAGGCAAA-----TC-TTC-CGTTGACTAGT--CTTA-TTCT-TG-TAGT--GAC-AACG-TCATT----GA------CGTGACCAA-TG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GT-------CA--CTT---ATA---T-CCGCCAGT-AT-G-GG-A-----------------ATACTCAGT--------C----------ATGTTGTTAAG-CGATACGGG---TAGTGAGCG-TGACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCATC-TA-AATTAATTAGGT--------T----AT-TATATAT-TTT-TATAAAATGCAATCTGCAA---ATAAAAGG--AATAA-AAACTTGG-AA-AAATAA-CCAA-ATGC-ATTGAAA----TTAAT-TA-ATT--AATT-GAGAATA---GC--C-ATCAAT-A-----TGCAC-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TGTTT--CAA-T--TTGTTTGCAT-----TTC-AT-CA--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCGTTGATATG------AT--AT--T--A-TAT--CA-A-TA-GCG-------------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC--A---------AACTTAG--T-----GGTAAG-----TC-TTC-acctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccTACTCTGATCTA-TTAT-GCT-AAATCGGGGC----AGT-CT-CATT--CTGTACT-AACA-GATGATATC-T--CTGC-CATCAAAATAATCTAA-TGGCT----TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAATAT
gi|9 : cgtcATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 4444444444444 3333333333 2222 1 3333333333333333 11111 11111 3333333333333333333333 1 11111 111 11 11 11111 222222 111 111111111 66666666666666666666666666666666666666666666666666666666666666666666666 11111 333333333 11111 1111 2222222 44444444 6666666666666666666666666 1 111 1 1 1111 111111 222222 111 22222 11 11 111111111 22222 1 1
lowQualScore : 8 8 8 0 5555555555555 8 8 8 8 4444444444 4444 6 6 3 4444444444444444 9999 5 33333 5 5 55555 5 5 1 5555555555555555555555 1 0 5 5 77 22222 5 000 5 66 5 66 66 66 11 11111 8 4 4 66 66 555555 2 1 222 66 111111111 66 4 66 66666666666666666666666666666666666666666666666666666666666666666666666 4 99 00000 4 4 4 777 4 111111111 66 1 00000 4 8 3 66 4 3 3 55 3 3 1111 9999999 3 3 3 44 99999999 44 555 4444 3 6 3 3 44 3 1 55 66 1111111111111111111111111 1 5 0 0 777 0 1 0 3 8 111 5555 222222 5 555555 5 5 77 5 5 88888 5 6 1 111 6 99 33333 6 8 11 6 33 55 6 888888888 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . ............. . . . . .......... .... . . . ................ .... . ..... . . ..... . . . ...................... . . . . .. ..... . ... . .. . .. .. .. .. ..... . . . .. .. ...... . . ... .. ......... .. . .. ....................................................................... . .. ..... . . . ... . ......... .. . ..... . . . .. . . . .. . . .... ....... . . . .. ........ .. ... .... . . . . .. . . .. .. ......................... . . . . ... . . . . . ... .... ...... . ...... . . .. . . ..... . . . ... . .. ..... . . .. . .. .. . ......... ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 0000000000000 0 0 0 0 1111111111 5555 7 7 3 2222222222222222 4444 7 99999 7 7 11111 7 7 4 5555555555555555555555 4 1 7 7 99 33333 7 444 7 99 0 99 00 99 99 11111 9 4 4 11 11 666666 7 9 222 11 666666666 11 4 11 77777777777777777777777777777777777777777777777777777777777777777777777 0 55 00000 0 4 4 888 4 444444444 11 1 00000 0 0 4 11 0 6 6 00 3 3 7777 6666666 3 3 1 22 44444444 22 444 7777 1 2 1 1 66 3 4 55 11 4444444444444444444444444 4 7 1 0 555 5 0 0 2 0 888 7777 999999 7 000000 7 7 99 7 7 77777 7 7 0 777 7 22 33333 7 0 00 0 88 00 7 777777777 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-AT-TGT-AT--GTATA---TGCAAT--TTGCAAA-TAA-A-GGAATAA--AA-CTTGG-AAAA-TAACCAA-ATGC-ATTGAAA----TTAAT-CA-A-TT--AA-TTGAGAATA---G-C--CATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TG-TTT--CA-AT--TT--TTGCAT-----TTC-AT-C-A--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAA-CCACCCG--TGCGTT-----G------AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGA--T--GAT-C----------CAC-T--------CATGTTGTGAAG-CGATAC-GG---TAGCGANCG-TGACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-AT-TGT-AT--ATATA---TGCA-T--TTGCAAA-TAA-A-GGAATAA--AA-CTTGG-AAAA-TAACCAA-ATGC-ATTGAAA----TTAAT-TA-A-TT--AA-TTGAGAATA---G-C--CATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TG-TTT--CA-NT--TT--TTGCAT-----TTC-AT-C-A--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAA-CCACCCG--TGC--------G------AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGA--T--GATAC----------CAC-T--------CATGTTGTGAAG-CGATAC-GG---TAGCGANCG-TGACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : AAT----TTAATATG-A-TTTTAA-TTGAG-ATACTCG-CT-CCTCA-T-ATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GT-C-TGG--TC-TTT--TA-TCAAAT--TTGCATCCCCCTTCGATAC-AATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAA-CCACCCG--TGC--------GAGTGAAAT--AC--TC-CA--TC--------CG-ATATTTGC-T-----T--T-TATTATCTATAC-ATGTT--CAGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC--AACTCA-TGAATGTT--ATCATCAGGCAAA-----T-CTTC-CG-TGATTAGT--CTTA-TTCTGT-GTGGT--GAC-ACCA-TCATT----GACGGGC-CGGGACC-AAT--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AA--TC-CCAATGA--T--G
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgcc-CTAT---T-AT-GTTGACGCG--CAGTTCTGCATT--CTGTACT-AAC-AGATGATAT-C-----------------AATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAAAATATcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatATATCAA-----TCTAA-TGCTT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-T-AT-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatg--TA-TTT--TA-GTA-TC--TTGCAT-----TTT-AT-C-A--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAA-TCACCCG--TGCGTT-----G------AT--ATGATA-TA--TCA-G-TA-GCA-GTATT--C-T-----T--TGAA------ACACAATAAT--TAGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct------ATAG-ATTTT--CAGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAT-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGTCAGAC-ACCA-TCAT-----------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTCA-CGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT----T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATA-CGA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GCGGT--GAC-ACCA-TCATT----GA------CGGGACC-AATGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-T-GTGGT--GAC-ACCA-TTATT----GA------CGGGACC-AATG-TAACAG----CATCAAATTC--GTCCTCT-GTTA-CGGGCA--TTT---ATAC----------------G-GG-AA--TT-CCATTGA--T--GAT-------------AC-T--------CATGTTGTGAAG-CGATA
gi|16 : AC-ACCA-TCATT----GA----C--GGGACT-AAAG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTCA-CGGGGA--ATT---ATAC----------------G-GG-AA--TC-TCATTGA--T--GAT-------------AC-T--------CATGTTGTGAAG-CGATA
gi|17 : A-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C--GGGATC-AATG-TAATGGGA-ACGTCCCATTC--GTCTTCT-G-------GCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGA--
gi|18 : -CTATCGCT-AT-ATCGGAGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-AT--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAAT-C-TACAATTAATTTGGTATTCAGTAT----AT-T-GT-TGT-AT--AAATA---TGCA-T--TTGCAAA-TAA-A-AGGATAA--A---T---------TAAC-----TGC-A-TAAAA----TTAAT-TATATTT--AATTTGAGGA-A---GCC--CATTA-T-------TGCATGAATAAATG-CTACAAG--CTCAG-CT-GTGT-T-A--TGTTTT--CA-ATG-TTG-TTGCAT-----TTC-AT-CAA--GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGCGTT-----G------AT--ATTCTA-TATTTCA----A-GCGAATATT--CGT-----TAATATA------ATAC-TTGTTC-CAGT-----TT-TAA-TTTA-TGTG-AT----AAT-TGAAC--A----ATTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT----GA----CGCCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GT-CTCT------TAGGCA---TT---ATACAGT-CCGCCAGTCATCG-GA-AA--GC-CC--TGATCT--GATGCG---------CAT-TGCGATTGGTATGTTG-GATGTCTA-AC-GG---TCACAATCGATG-CG-TTACAATGAT----CTATCA-T-AT-ATTGGAG----CAGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT----T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-T-AT-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA---TGCAAT--TTGCAAA-TAA-AAGGAATAA--AATCATGG-AAAAATAACCAT-ATGA-ATTGAAgtta
gi|22 : aGA-AAAA-TAACCAA-ATGC-ATTGAAA----TTAAA-TA-A-TT--AA-TTGAGAATA---
gi|23 : tg-AT-G-GG-AA--TC-CCATTGA--T--GAT-------------AC-T--------CATGCTAGAAAG-CGACA
gi|3 : CCCCCAT-CGTA-AATTAAT-AGGT--------TT---AT-TCAT-AGT-ATTGGTTTAAAATGCAATAATTGCAAA-TAAGA-GGAATAA----------------TAAC-----TGCCATTAAAAGATTTCAAT-CA-A-TT--AA-TTGAGGATA---T-C--CATCA-TTA-----TGCAT-AATAAATG-C-ACAAG--C---AGCTCGTGCTT-AACTG-TTTTCCA-AT--TT--TTGCAT-----TTCAAT-C-A--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAA-CCACCCGTATGCGTT-----G------ATTAAT--TACTA--TCA-ATTACGCG-AGATT--C-TTAATAT--CATA------ATAC-ATGTTCACAGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA----A-TGAATGTA--ATC-TCA--CTAACTTCCC-CTTCGCGTTGA-TAGTCACTTATTTCT-T-GTGGT--GAC-ACCATTCATTCGACGG----C-CGGGATC-AATG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAA--TCGCCA
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctT-ATCATCGAG-----CAGT-CT-CATTTGCTGTACTCAAC-AGATGCTAT-CTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcaATCAAAAAATTCTAAATGGCTATTTT-T--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACT-ATTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTT-C-TT-CATTGATTAGGT--------T----AT-T-AT-TAC-AT--GTAT----TG---T--TTGCAAAATAA-A-GGAATAATAAA-CTTGG-AAAC-TAACCAATATGC-ATTGAAA----TTGAT-CA-A-C----A-TTGAAAATA---T-CTCCATCAAT-A-----TGCAT-AATAAATG-C-ACAAG--C---A-TT-GTTC-T-A--TG-TTT--CA-TT--TT--TTGCAT-----TTT-AT-C-A--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAA-TCAT----------------A------ATCAAT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA--------------------A--ATCAGGCAAA-----T-CTTC-CATTGAGTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCAAT----GA----A--GGGACC-AATT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCCT-CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AA--TC-CCATTGA--T--GATACTCACTCTCACCACCT--------CATGTTGTGAAG-CGATAC-GG---TAGTGAGCG-TGACCATTATATTGGT-TG-CTA-CACTGAT-ATCGGGGCATGCAGT-CA-CATT--CTGTACT-AAC-AAAAGATAT-AT--CTGC-CATCAAAATAATCTAA-TGACT---TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT----TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCCTCTCATTC-TA-AATTAATTAGGT--------TCTTTATAT-AT-TGTTAT--AAA-A---TGCA-A--ATGCAAA-TAA-A-AGGATAA--AA-CTTGGAAAAA-AAACCAA-ATGC-ATTGAA-------GAT-CA-A-----A---------------------------A-----TGCAT-AA-AAATGTC-AC-AG--C---A-CT-GT-T-T-A--TG-TTT--CATGT--TT--TTGC-T-----TTC-AG-C-A--GCCAA--T-ATA------TCGAT-ATTGATTTT---CA--CGACTA-----T---CT--ACAA-CCACC----TGC--------G------GT--TG--TA-TA--TCATA-TA--CG-GTATT--T------------TA------ATAC-A-GTT--CAAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA-----------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-T-GTG----GAC-ACCA-T-ATTTG--GA----C-AGGGAAC-AATG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AA--TT-CCA-TGA--T--GAT-------------AC-T--------CATGTTGTGAAG-CGATAC-GGGTATAG-AACCG-TGACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctcccccccccccccccccccccc-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-GTGT-T-A--TG-TTT--CA-AT--TT--TTGCAT-----TTC-AT-C-A--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAA-CCACCCG--TAC--------GTTGAT-AT--AT--TA-GA--TCA-A-TA-GCG-ATATT--C-T-----T--AAT-------ATAT-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAACA-A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GACAG-C-CGGGACC-AATG-TAATGGGG-ACGTGCAATTC--GTCTTCT--------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG-GACGTC-CAATTttttaacgtacacaagattgattgtcctacactgatctactt
gi|6 : AATGGGG-ACGTCCAATTC--GTCTTCT-G-------GCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AA--TC-CCTTTGA--TGCGATAC----------cgtcttctggcatttatacagtccgccagtatgggaatccctttgatgcgatacgagtacattctcattctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|6 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaGCG-AT-A-CGAGTA---CATT-CT-CATT--CTGTACT-AAC-AGGTGATAT-CT--CTGC-TATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-gagtacattctcattctgtactaacaggtgatatctctgctatcaaaataatctaatggcttgtcagta
gi|7 : atgcataataaatgcacaagcactgtgttatgtttcaatttttgcatttcatcagccaataatatcgacaattaattttcacgcatatctacaaccacccgtacgttgatatattagatcaatagcgatattcttaatatatatgttcagttttaattttatgtgataaattgaacaaatgaatgtaatcatcaggcaaatcttccgttgattagtcttattcttgtggtgacaccatcattgacagccgggaccaatgtaatggggacgtgcaattcgtcttctggcatttatacagtccgcnaaaatggggacgtccaattcgtcttctggcatttatacagtccgccagtatgggaatccctttgatAT-----TTC-AT-C-T--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAA-CCACCCG--TGC--------G----------------------------------GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGACTAGT--CTTA-TTCT-T-GTAGT--GAC-AACG-TCATT----GA------CGTGACC-AATG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GT-------CA--CTT---ATA---T-CCGCCAGT-AT-G-GG-AA--T----ACT----------------------CAG-T--------CATGTTGTTAAG-CGATACGGG---TAGTGAGCG-TGACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-ATATAT-TT--TTATAAAATGCAAT--CTGCAAA-TAA-AAGGAATAA--AAACTTGG-AAAAATAACCAA-ATGC-ATTGAAA----TTAAT-TA-A-TT--AA-TTGAGAATA---G-C--CATCAAT-A-----TGCAC-AATAAATG-C-ACAAG--C---A-CT-GTGC-T-A--TG-TTT--CA-AT--TTGTTTGCAT-----TTC-AT-C-A--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAA-CCACCCG--TGCGTTGATATG------AT--AT--TA-TA--TCA-A-TA-GCG-------------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC--A--------AACTTA--GT-----GGTAAG-----T-CTTC-acctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccT-CTACTCTGATCTA-TTAT-GCT-AA-ATCGGGGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAATAT
gi|9 : cgATCAAAATAATCTAA-TGGCT----TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 444444444444444444444444444444444444 2222222222222222 1111 3333333333333333333333 1 11111 11 1111 11 11111 11 222222 111 111111111 3333333333333333333 1111111 33333333333333333333333 11111 333333333 11111 1111 222222222 44444444 11111 5555555555555 111111111 111 2222222222222 222222 111 22222 11 11 111111111 22222 1 1
lowQualScore : 8 8 8 0 777777777777777777777777777777777777 3 99 6 6 6 6 7777777777777777 5 9999 5 4444 6 777 5 5 1 5555555555555555555555 1 0 5 5 77 22222 5 77 666 66 5 11 0000 11 11111 8 4 00 66 555555 2 1 222 66 111111111 66 4 66 2222222222222222222 4 66 3333333 77 22222222222222222222222 4 99 00000 4 4 4 777 4 111111111 66 1 00000 4 8 3 66 4 3 3 55 3 3 1111 999999999 3 3 3 44 55555555 44 555 7777 3 6 3 3 3 00000 777 3333333333333 777 66 0 5 888 8 444444444 1 8 111 6 999 3333333333333 5 555555 5 5 77 5 5 88888 5 6 1 111 6 99 33333 6 8 11 6 33 55 6 888888888 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . .................................... . .. . . . . ................ . .... . .... . ... . . . ...................... . . . . .. ..... . .. ... .. . .. .... .. ..... . . .. .. ...... . . ... .. ......... .. . .. ................... . .. ....... .. ....................... . .. ..... . . . ... . ......... .. . ..... . . . .. . . . .. . . .... ......... . . . .. ........ .. ... .... . . . . . ..... ... ............. ... .. . . ... . ......... . . ... . ... ............. . ...... . . .. . . ..... . . . ... . .. ..... . . .. . .. .. . ......... ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 222222222222222222222222222222222222 2 22 7 7 7 7 9999999999999999 7 4444 7 2222 7 333 7 7 4 7777777777777777777777 4 1 7 7 99 33333 7 99 999 99 0 99 1111 99 11111 9 4 66 11 666666 7 9 222 11 666666666 11 4 11 0000000000000000000 4 11 2222222 11 66666666666666666666666 0 55 00000 0 4 4 888 4 444444444 11 1 00000 0 0 4 11 0 6 6 00 3 3 7777 666666666 3 3 3 66 22222222 66 888 4444 3 7 3 3 6 00000 888 2222222222222 111 99 1 0 888 0 666666666 0 0 888 7 000 8888888888888 7 000000 7 7 99 7 7 77777 7 7 0 777 7 22 33333 7 0 00 0 88 00 7 777777777 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-AT-TGTAT--GTATAAAATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C---CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CCA-C-T--CATGTTGTGAAG-CG---ATAC-GG---TA-GCGAGCG-TG--ACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-AT-TGTAT--GTATA---TGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C---CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CCA-C-T--CATGTTGTGAAG-CG---ATAC-GG---TA-GCGANCG-TG--ACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : TT-AATT-GAG-ATACTCGCT-C-CTCA-T-ATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GTCTGG-TC--TTTTAT--CA-A--AT--TTGCATCCCCCTTCGATACAATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC-ACCCG--TGCGAG-----TGAAAT--AC--TC-CA--TC--------CG-ATATTTGC-T-----T--T-TATTATCTATAC-ATGTT--CAGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC--AACTCA-TGAATGTT--ATCATCAGGCAAA-----T-CTTC-CG-TGATTAGT--CTTA-TTCTGT-GTGGT--GAC-ACCA-TCATT----GACGGGC---CGGGACC-AAT--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AATC-CC--AA-TGATG---
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgatt-CTAT---T-AT-GTTGACGCG--CAGTTCTGCATT--CTGTACT-AAC-AGATGATAT-C-----------------AATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAAAATATcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatATATCAA-----TCTAA-TGCTT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-T-AT-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatg--TATT-T--TA-GTATC--TTGCAT-----TTT-AT-CA--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC-ACCCG--TGCG-T-----TG--AT--ATGATA-TA--TCA-G-TA-GCA-GTATT--C-T-----T--TGAA------ACACAATAAT--TAGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct------ATAG-ATTTT--CAGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAT-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGTCAGAC-ACCA-TCAT-------------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTCA-CGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT----T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATA-CGA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GCGGT--GAC-ACCA-TCATT----GA--------CGGGACC-AATGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-T-GTGGT--GAC-ACCA-TTATT----GA--------CGGGACC-AATG-TAACAG----CATCAAATTC--GTCCTCT-GTTA-CGGGCA--TTT---ATAC----------------G-GG-AATT-CC--AT-TGATG---AT-------------A-C-T--CATGTTGTGAAG-CG---ATA
gi|16 : AC-ACCA-TCATT----GA----C----GGGACT-AAAG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTCA-CGGGGA--ATT---ATAC----------------G-GG-AATC-TC--AT-TGATG---AT-------------A-C-T--CATGTTGTGAAG-CG---ATA
gi|17 : A-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C----GGGATC-AATG-TAATGGGA-ACGTCCCATTC--GTCTTCT-G-------GCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AATC-CC--TT-TGA
gi|18 : -CTATCGCT-AT-ATCGGAGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-AT--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAAT-C-TACAATTAATTTGGTATTCAGTAT----AT-T-GT-TGTAT--AAATA---TGCA-T--TTGCAAA-T-AA-A-AGGATAA--A----T--------TAA-C-----TGC-AT-AAAA----TTAATTATATTTAATTTGAGGA-A---GC--CCATTA-T-------TGCATGAATAAATG-CTACAAG--CTCAG-CT-G--TGT-TA--TGTT-TT-CA-ATGTTG-TTGCAT-----TTC-AT-CAA-GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGCG-T-----TG--AT--ATTCTA-TATTTCA----A-GCGAATATT--CGT-----TAATATA------ATAC-TTGTTC-CAGT-----TT-TAA-TTTA-TGTG-AT----AAT-TGAAC--A----ATTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT----GA----CG--CCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GT-CTCT------TAGGCA---TT---ATACAGT-CCGCCAGTCATCG-GA-AAGC-CCTGATCTGATGCGCATTG---------CGA-T-TGGTATGTTG-GATGTCT---A-AC-GG---TC-ACAATCGATG---CG-TTACAATGAT----CTATCA-T-AT-ATTGGAG----CAGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT----T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-T-AT-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA---TGCAAT--TTGCAAA-TAAA-A-GGAATAA--AATCATGGAAAAA-TAA-CCAT-ATGA-ATTGAAgtta
gi|22 : aGA-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAAATA-ATT-AATT-GAGAATA---
gi|23 : tg-AT-G-GG-AATC-CC--AT-TGATG---AT-------------A-C-T--CATGCTAGAAAG-CG---ACA
gi|3 : CCCCCAT-CGTA-AATTAAT-AGGT--------TT---AT-TCAT-AGTATTGGTTTAAAATGCAATAATTGCAAA-T-AAGA-GGAATAA----------------TAA-C-----TGCCATTAAAAGATTTCAATCA-ATT-AATT-GAGGATA---TC--C-ATCA-TTA-----TGCAT-AATAAATG-C-ACAAG--C---AGCTCG--TGCTTAACTGTT-TTCCA-AT-TT--TTGCAT-----TTCAAT-CA--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC-ACCCGTATGCG-T-----TG--ATTAAT--TACTA--TCA-ATTACGCG-AGATT--C-TTAATAT--CATA------ATAC-ATGTTCACAGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA----A-TGAATGTA--ATC-TCA--CTAACTTCCC-CTTCGCGTTGA-TAGTCACTTATTTCT-T-GTGGT--GAC-ACCATTCATTCGACGG----C---CGGGATC-AATG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAATCGCC--A
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctT-ATCATCGAG-----CAGT-CT-CATTTGCTGTACTCAAC-AGATGCTAT-CTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcaATCAAAAAATTCTAAATGGCTATTTT-T--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACT-ATTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTT-C-TT-CATTGATTAGGT--------T----AT-T-AT-TACAT--GTAT----TG---T--TTGCAAAAT-AA-A-GGAATAATAAA-CTTGG-AAAC-TAA-CCAATATGC-ATTGAAA----TTGATCA-AC---ATT-GAAAATA---TCTCC-ATCAAT-A-----TGCAT-AATAAATG-C-ACAAG--C---A-TT-G--TTC-TA--TGTT-T--CA-TT-TT--TTGCAT-----TTT-AT-CA--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC-A-----------------TA--ATCAAT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA--------------------A--ATCAGGCAAA-----T-CTTC-CATTGAGTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCAAT----GA----A----GGGACC-AATT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCCT-CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---ATACTCACTCTCACCA-CCT--CATGTTGTGAAG-CG---ATAC-GG---TA-GTGAGCG-TG--ACCATTATATTGGT-TG-CTA-CACTGAT-ATCGGGGCATGCAGT-CA-CATT--CTGTACT-AAC-AAAAGATAT-AT--CTGC-CATCAAAATAATCTAA-TGACT---TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT----TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCCTCTCATTC-TA-AATTAATTAGGT--------TCTTTATAT-AT-TGT-----TATAAAATGCAAA--T-GCAAA-T-AA-A-AGGATAA--AA-CTTGG-AAAA-AAAACCAA-ATGC-ATTGAAG-------ATCA-A---------------------------A---A-----TGCAT-AA-AAATGTC-ACA-G--C---A-CT-G--T-T-TA--TGTT-T--CATGT-TT--TTGC-T-----TTC-AG-CA--GCCAA--TA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC-ACCTG--CG-G-T-----TG----------TA-TA--TCATA-TA--CG-GTATT--T------------TA------ATAC-A-GTT--CAAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA-----------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-T-GTG----GAC-ACCA-T-ATTTG--GA----C---AGGGAAC-AATG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AATT-CC--A--TGATG---AT-------------A-C-T--CATGTTGTGAAG-CG---ATAC-GGGTATA-G-AACCG-TG--ACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctcccccccccccccccccccccc-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGT-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TACG-T-----TG--AT--ATATTA-GA--TCA-A-TA-GCG-ATATT--C-T-----T--AATA-------TAT-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----CAGCCGGGACC-AATG-TAATGGGG-ACGTGCAATTC--GTCTTCT-G-------GCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG--------------GACG----T-----------CCAAT-T--CGTCTTCTG--G-CATTTATAC-AG---TCCGCCAGTA-TGGGAAT-CC-CTTTGAT---------GCG-AT-A-CGAGTA---CATT-CT-CATT--CTGTACT-AAC-AGGTGATAT-CT--CTGC-TATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-ttttaacgtacacaagattgattgtcctacactgatctactt
gi|7 : AT-----TTC-AT-CT--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG---------------------------------------GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGACTAGT--CTTA-TTCT-T-GTAGT--GAC-AACG-TCATT----GA--------CGTGACC-AATG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GT-------CA--CTT---ATA---T-CCGCCAGT-AT-G-GG-AAT-----------------AC-----------TCA-G-T--CATGTTGTTAAG-CG---ATACGGG---TA-GTGAGCG-TG--ACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCAT-C-TA-AATTAATTAGGT--------T----AT-T-ATATATTT--TTATAAAATGCAAT--CTGCAAA-T-AA-AAGGAATAA--AAACTTGG-AAAAATAA-CCAA-ATGC-ATTGAAA----TTAATTA-ATT-AATT-GAGAATA---GC--C-ATCAAT-A-----TGCAC-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TTGTTTGCAT-----TTC-AT-CA--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGATATG--AT--AT--TA-TA--TCA-A-TA-GCG-------------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC--A--------AACTTA--GT-----GGTAAG-----T-CTTC-acctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccT-CTACTCTGATCTA-TTAT-GCT-AA-ATCGGGGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAATAT
gi|9 : cgATCAAAATAATCTAA-TGGCT----TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 33333333333 111 2222 2222222222222222 1111 3333333333333333333333 1 11111 11 1111 11 11111 11 222222 111 111111111 3333333333333333333 1111111 33333333333333333333333 11111 333333333 11111 1111 2222222 44444444 11111 55555555555555 111111111 11 2222222222222 222222 111 22222 11 11 111111111 22222 1 1
lowQualScore : 8 8 8 0 99999999999 666 8 2222 0 6 3 99 6 6 6 6 7777777777777777 5 9999 5 4444 6 777 5 5 1 5555555555555555555555 1 0 5 5 77 22222 5 77 666 66 5 11 0000 11 11111 8 4 00 66 555555 2 1 222 66 111111111 66 4 66 2222222222222222222 4 66 3333333 77 88888888888888888888888 4 99 00000 4 4 4 777 4 111111111 66 1 00000 4 8 3 66 4 3 3 55 3 3 1111 9999999 3 3 3 44 77777777 44 555 7777 3 6 3 3 3 00000 777 88888888888888 5 66 0 5 888 8 444444444 8 11 0 6 999 3333333333333 5 555555 5 5 77 5 5 88888 5 6 1 111 6 99 33333 6 8 11 6 33 55 6 888888888 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . ........... ... . .... . . . .. . . . . ................ . .... . .... . ... . . . ...................... . . . . .. ..... . .. ... .. . .. .... .. ..... . . .. .. ...... . . ... .. ......... .. . .. ................... . .. ....... .. ....................... . .. ..... . . . ... . ......... .. . ..... . . . .. . . . .. . . .... ....... . . . .. ........ .. ... .... . . . . . ..... ... .............. . .. . . ... . ......... . .. . . ... ............. . ...... . . .. . . ..... . . . ... . .. ..... . . .. . .. .. . ......... ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 00000000000 888 0 6666 8 7 2 22 7 7 7 7 9999999999999999 7 4444 7 2222 7 333 7 7 4 7777777777777777777777 4 1 7 7 99 33333 7 99 999 99 0 99 1111 99 11111 9 4 66 11 666666 7 9 222 11 666666666 11 4 11 0000000000000000000 4 11 2222222 11 11111111111111111111111 0 55 00000 0 4 4 888 4 444444444 11 1 00000 0 0 4 11 0 6 6 00 3 3 7777 6666666 3 3 3 66 22222222 66 888 4444 3 7 3 3 6 00000 888 22222222222222 0 99 1 0 888 0 666666666 0 00 8 7 000 8888888888888 7 000000 7 7 99 7 7 77777 7 7 0 777 7 22 33333 7 0 00 0 88 00 7 777777777 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-AT-TGTAT--GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-AT-TGTAT--GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : TT-AATT-GAG-ATACTCGCT-C-CTCA-T-ATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GTCTGG-TC--TTTTAT--CA-A--AT--TTGCATCCCCCTTCGATACAATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC-ACCCG--TGCGAG-----TGAAAT--AC--TC-CA--TC--------CG-ATATTTGC-T-----T--T-TATTATCTATAC-ATGTT--CAGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC--AACTCA-TGAATGTT--ATCATCAGGCAAA-----T-CTTC-CG-TGATTAGT--CTTA-TTCTGT-GTGGT--GAC-ACCA-TCATT----GACGGGC-CGGGACC-AAT--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AATC-CC--AA-TGATG---
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgatt-CTAT---T-AT-GTTGACGCG--CAGTTCTGCATT--CTGTACT-AAC-AGATGATAT-C-----------------AATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAAAATATcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatATATCAA-----TCTAA-TGCTT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-T-AT-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatg--TATT-T--TA-GTATC--TTGCAT-----TTT-AT-CA--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC-ACCCG--TGCG-T-----TG--AT--ATGATA-TA--TCA-G-TA-GCA-GTATT--C-T-----T--TGAA------ACACAATAAT--TAGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct------ATAG-ATTTT--CAGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAT-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGTCAGAC-ACCA-TCAT-----------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTCA-CGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT----T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATA-CGA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GCGGT--GAC-ACCA-TCATT----GA------CGGGACC-AATGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-T-GTGGT--GAC-ACCA-TTATT----GA------CGGGACC-AATG-TAACAG----CATCAAATTC--GTCCTCT-GTTA-CGGGCA--TTT---ATAC----------------G-GG-AATT-CC--AT-TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATA
gi|16 : AC-ACCA-TCATT----GA----C--GGGACT-AAAG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTCA-CGGGGA--ATT---ATAC----------------G-GG-AATC-TC--AT-TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATA
gi|17 : A-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C--GGGATC-AATG-TAATGGGA-ACGTCCCATTC--GTCTTCT-G-------GCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AATC-CC--TT-TGA
gi|18 : -CTATCGCT-AT-ATCGGAGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-AT--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAAT-C-TACAATTAATTTGGTATTCAGT----AT---AT-TGT-T--GTATAAATATGCA-T--TTGCAAA-T-AA-A-AGGATAA--A----T--------TAA-C-----TGC-AT-AAAA----TTAATTATATTTAATTTGAGGA-A---GC--CCATTA-T-------TGCATGAATAAATG-CTACAAG--CTCAG-CT-G--TGT-TA--TGTT-TT-CA-ATGTTG-TTGCAT-----TTC-AT-CAA-GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGCG-T-----TG--AT--ATTCTA-TATTTCA----A-GCGAATATT--CGT-----TAATATA------ATAC-TTGTTC-CAGT-----TT-TAA-TTTA-TGTG-AT----AAT-TGAAC--A----ATTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT----GA----CGCCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GT-CTCT------TAGGCA---TT---ATACAGT-CCGCCAGTCATCG-GA-AAGC-CCTGATCTGATGCGCATTG---------CG-AT-TGGTATGTTG-GATGTCT---A-AC-GG---T-CACAATCGAT--G-CG-TTACAATGAT----CTATCA-T-AT-ATTGGAG----CAGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT----T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-T-AT-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA-ATGCAAT--TTGCAAA-TAAA-A-GGAATAA--AATCATGGAAAAA-TAA-CCAT-ATGA-ATTGAAgtta
gi|22 : GA-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAAATA-ATT-AATT-GAGAATA---
gi|23 : tg-AT-G-GG-AATC-CC--AT-TGATG---AT--------------AC-T--CATGCTAGAAAG-CG---ACA
gi|3 : CCCCCAT-CGTA-AATTAAT-AGGT------TT---AT-TCAT-AGTATTGGTTTAAA-ATGCAATAATTGCAAA-T-AAGA-GGAATAA----------------TAA-C-----TGCCATTAAAAGATTTCAATCA-ATT-AATT-GAGGATA---TC--C-ATCA-TTA-----TGCAT-AATAAATG-C-ACAAG--C---AGCTCG--TGCTTAACTGTT-TTCCA-AT-TT--TTGCAT-----TTCAAT-CA--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC-ACCCGTATGCG-T-----TG--ATTAAT--TACTA--TCA-ATTACGCG-AGATT--C-TTAATAT--CATA------ATAC-ATGTTCACAGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA----A-TGAATGTA--ATC-TCA--CTAACTTCCC-CTTCGCGTTGA-TAGTCACTTATTTCT-T-GTGGT--GAC-ACCATTCATTCGACGG----C-CGGGATC-AATG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAATCGCC--A
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctT-ATCATCGAG-----CAGT-CT-CATTTGCTGTACTCAAC-AGATGCTAT-CTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcaATCAAAAAATTCTAAATGGCTATTTT-T--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACT-ATTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTT-C-TT-CATTGATTAGGT------T----AT-T-AT-TACAT--GTAT-----TG---T--TTGCAAAAT-AA-A-GGAATAATAAA-CTTGG-AAAC-TAA-CCAATATGC-ATTGAAA----TTGATCA-AC---ATT-GAAAATA---TCTCC-ATCAAT-A-----TGCAT-AATAAATG-C-ACAAG--C---A-TT-G--TTC-TA--TGTT-T--CA-TT-TT--TTGCAT-----TTT-AT-CA--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC-A-----------------TA--ATCAAT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA--------------------A--ATCAGGCAAA-----T-CTTC-CATTGAGTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCAAT----GA----A--GGGACC-AATT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCCT-CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---ATACTCACTCTCACC-ACCT--CATGTTGTGAAG-CG---ATAC-GG---T-AGTGAGCG-T--GACCATTATATTGGT-TG-CTA-CACTGAT-ATCGGGGCATGCAGT-CA-CATT--CTGTACT-AAC-AAAAGATAT-AT--CTGC-CATCAAAATAATCTAA-TGACT---TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT----TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCCTCTCATTC-TA-AATTAATTAGGT------TCTTTATAT-AT-TGT-----TATAAA-ATGCAAA--T-GCAAA-T-AA-A-AGGATAA--AA-CTTGG-AAAA-AAAACCAA-ATGC-ATTGAAG-------ATCA-A---------------------------A---A-----TGCAT-AA-AAATGTC-ACA-G--C---A-CT-G--T-T-TA--TGTT-T--CATGT-TT--TTGC-T-----TTC-AG-CA--GCCAA--TA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC-ACCTG--CG-G-T-----TG----------TA-TA--TCATA-TA--CG-GTATT--T------------TA------ATAC-A-GTT--CAAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA-----------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-T-GTG----GAC-ACCA-T-ATTTG--GA----C-AGGGAAC-AATG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AATT-CC--A--TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATAC-GGGTAT-AG-AACCG-T--GACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctcccccccccccccccccccccc-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGT-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TACG-T-----TGATAT--AT--TA-GA--TCA-A-TA-GCG-ATATT--C-T-----T--AAT-------ATAT-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAACA-A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GACAG-C-CGGGACC-AATG-TAATGGGG-ACGTGCAATTC--GTCTTCT--------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG--------------GACG----T-----------CCAAT-T--CGTCTTCTG--G-CATTTATAC-AG---TCCGCCAGTA-TGGGAAT-CC-CTTTGAT---------GCG-AT-A-CGAGTA---CATT-CT-CATT--CTGTACT-AAC-AGGTGATAT-CT--CTGC-TATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-ttttaacgtacacaagattgattgtcctacactgatctactt
gi|7 : AT-----TTC-AT-CT--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG---------------------------------------GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGACTAGT--CTTA-TTCT-T-GTAGT--GAC-AACG-TCATT----GA------CGTGACC-AATG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GT-------CA--CTT---ATA---T-CCGCCAGT-AT-G-GG-AAT-----------------AC-----------TC-AG-T--CATGTTGTTAAG-CG---ATACGGG---T-AGTGAGCG-T--GACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-ATATATTT--TTATAAA-ATGCAAT--CTGCAAA-T-AA-AAGGAATAA--AAACTTGG-AAAAATAA-CCAA-ATGC-ATTGAAA----TTAATTA-ATT-AATT-GAGAATA---GC--C-ATCAAT-A-----TGCAC-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TTGTTTGCAT-----TTC-AT-CA--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGATATG--AT--AT--TA-TA--TCA-A-TA-GCG-------------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC--A--------AACTTA--GT-----GGTAAG-----T-CTTC-acctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccT-CTACTCTGATCTA-TTAT-GCT-AA-ATCGGGGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAATAT
gi|9 : cgATCAAAATAATCTAA-TGGCT----TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 33333333333 111 2222 2222222222222222 1111 3333333333333333333333 1 11111 11 1111 11 11111 11 222222 111 111111111 3333333333333333333 1111111 33333333333333333333333 11111 333333333 11111 1111 2222222 44444444 11111 55555555555555 111111111 11 2222222222222 222222 111 22222 11 11 111111111 22222 1 1
lowQualScore : 8 8 8 0 99999999999 666 8 2222 0 6 3 99 6 6 6 6 7777777777777777 5 9999 5 4444 6 777 5 5 1 5555555555555555555555 1 0 5 5 77 22222 5 77 666 66 5 11 0000 11 11111 8 4 00 66 555555 2 1 222 66 111111111 66 4 66 2222222222222222222 4 66 3333333 77 88888888888888888888888 4 99 00000 4 4 4 777 4 111111111 66 1 00000 4 8 3 66 4 3 3 55 3 3 1111 9999999 3 3 3 44 77777777 44 555 7777 3 6 3 3 3 00000 777 88888888888888 5 66 0 5 888 8 444444444 8 11 0 6 999 3333333333333 5 555555 5 5 77 5 5 88888 5 6 1 111 6 99 33333 6 8 11 6 33 55 6 888888888 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . ........... ... . .... . . . .. . . . . ................ . .... . .... . ... . . . ...................... . . . . .. ..... . .. ... .. . .. .... .. ..... . . .. .. ...... . . ... .. ......... .. . .. ................... . .. ....... .. ....................... . .. ..... . . . ... . ......... .. . ..... . . . .. . . . .. . . .... ....... . . . .. ........ .. ... .... . . . . . ..... ... .............. . .. . . ... . ......... . .. . . ... ............. . ...... . . .. . . ..... . . . ... . .. ..... . . .. . .. .. . ......... ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 00000000000 888 0 6666 8 7 2 22 7 7 7 7 9999999999999999 7 4444 7 2222 7 333 7 7 4 7777777777777777777777 4 1 7 7 99 33333 7 99 999 99 0 99 1111 99 11111 9 4 66 11 666666 7 9 222 11 666666666 11 4 11 0000000000000000000 4 11 2222222 11 11111111111111111111111 0 55 00000 0 4 4 888 4 444444444 11 1 00000 0 0 4 11 0 6 6 00 3 3 7777 6666666 3 3 3 66 22222222 66 888 4444 3 7 3 3 6 00000 888 22222222222222 0 99 1 0 888 0 666666666 0 00 8 7 000 8888888888888 7 000000 7 7 99 7 7 77777 7 7 0 777 7 22 33333 7 0 00 0 88 00 7 777777777 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-AT-TGTAT--GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-AT-TGTAT--GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : TT-AATT-GAG-ATACTCGCT-C-CTCA-T-ATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GTCTGG-TC--TTTTAT--CA-A--AT--TTGCATCCCCCTTCGATACAATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC-ACCCG--TGCGAG-----TGAAAT--AC--TC-CA--TC--------CG-ATATTTGC-T-----T--T-TATTATCTATAC-ATGTT--CAGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC--AACTCA-TGAATGTT--ATCATCAGGCAAA-----T-CTTC-CG-TGATTAGT--CTTA-TTCTGT-GTGGT--GAC-ACCA-TCATT----GACGGGC-CGGGACC-AAT--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AATC-CC--AA-TGATG---
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgatt-CTAT---T-AT-GTTGACGCG--CAGTTCTGCATT--CTGTACT-AAC-AGATGATAT-C-----------------AATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAAAATATcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatATATCAA-----TCTAA-TGCTT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-T-AT-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatg--TATT-T--TA-GTATC--TTGCAT-----TTT-AT-CA--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC-ACCCG--TGCG-T-----TG--AT--ATGATA-TA--TCA-G-TA-GCA-GTATT--C-T-----T--TGAA------ACACAATAAT--TAGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct------ATAG-ATTTT--CAGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAT-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGTCAGAC-ACCA-TCAT-----------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTCA-CGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT----T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATA-CGA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GCGGT--GAC-ACCA-TCATT----GA------CGGGACC-AATGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-T-GTGGT--GAC-ACCA-TTATT----GA------CGGGACC-AATG-TAACAG----CATCAAATTC--GTCCTCT-GTTA-CGGGCA--TTT---ATAC----------------G-GG-AATT-CC--AT-TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATA
gi|16 : AC-ACCA-TCATT----GA----C--GGGACT-AAAG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTCA-CGGGGA--ATT---ATAC----------------G-GG-AATC-TC--AT-TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATA
gi|17 : A-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C--GGGATC-AATG-TAATGGGA-ACGTCCCATTC--GTCTTCT-G-------GCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AATC-CC--TT-TGA
gi|18 : -CTATCGCT-AT-ATCGGAGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-AT--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAAT-C-TACAATTAATTTGGTATTCAGT----AT---AT-TGT-T--GTATAAATATGCA-T--TTGCAAA-T-AA-A-AGGATAA--A----T--------TAA-C-----TGC-AT-AAAA----TTAATTATATTTAATTTGAGGA-A---GC--CCATTA-T-------TGCATGAATAAATG-CTACAAG--CTCAG-CT-G--TGT-TA--TGTT-TT-CA-ATGTTG-TTGCAT-----TTC-AT-CAA-GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGCG-T-----TG--AT--ATTCTA-TATTTCA----A-GCGAATATT--CGT-----TAATATA------ATAC-TTGTTC-CAGT-----TT-TAA-TTTA-TGTG-AT----AAT-TGAAC--A----ATTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT----GA----CGCCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GT-CTCT------TAGGCA---TT---ATACAGT-CCGCCAGTCATCG-GA-AAGC-CCTGATCTGATGCGCATTG---------CG-AT-TGGTATGTTG-GATGTCT---A-AC-GG---T-CACAATCGAT--G-CG-TTACAATGAT----CTATCA-T-AT-ATTGGAG----CAGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT----T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-T-AT-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA-ATGCAAT--TTGCAAA-TAAA-A-GGAATAA--AATCATGGAAAAA-TAA-CCAT-ATGA-ATTGAAgtta
gi|22 : GA-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAAATA-ATT-AATT-GAGAATA---
gi|23 : tg-AT-G-GG-AATC-CC--AT-TGATG---AT--------------AC-T--CATGCTAGAAAG-CG---ACA
gi|3 : CCCCCAT-CGTA-AATTAAT-AGGT------TT---AT-TCAT-AGTATTGGTTTAAA-ATGCAATAATTGCAAA-T-AAGA-GGAATAA----------------TAA-C-----TGCCATTAAAAGATTTCAATCA-ATT-AATT-GAGGATA---TC--C-ATCA-TTA-----TGCAT-AATAAATG-C-ACAAG--C---AGCTCG--TGCTTAACTGTT-TTCCA-AT-TT--TTGCAT-----TTCAAT-CA--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC-ACCCGTATGCG-T-----TG--ATTAAT--TACTA--TCA-ATTACGCG-AGATT--C-TTAATAT--CATA------ATAC-ATGTTCACAGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA----A-TGAATGTA--ATC-TCA--CTAACTTCCC-CTTCGCGTTGA-TAGTCACTTATTTCT-T-GTGGT--GAC-ACCATTCATTCGACGG----C-CGGGATC-AATG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAATCGCC--A
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctT-ATCATCGAG-----CAGT-CT-CATTTGCTGTACTCAAC-AGATGCTAT-CTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcaATCAAAAAATTCTAAATGGCTATTTT-T--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACT-ATTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTT-C-TT-CATTGATTAGGT------T----AT-T-AT-TACAT--GTAT-----TG---T--TTGCAAAAT-AA-A-GGAATAATAAA-CTTGG-AAAC-TAA-CCAATATGC-ATTGAAA----TTGATCA-AC---ATT-GAAAATA---TCTCC-ATCAAT-A-----TGCAT-AATAAATG-C-ACAAG--C---A-TT-G--TTC-TA--TGTT-T--CA-TT-TT--TTGCAT-----TTT-AT-CA--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC-A-----------------TA--ATCAAT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA--------------------A--ATCAGGCAAA-----T-CTTC-CATTGAGTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCAAT----GA----A--GGGACC-AATT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCCT-CGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---ATACTCACTCTCACC-ACCT--CATGTTGTGAAG-CG---ATAC-GG---T-AGTGAGCG-T--GACCATTATATTGGT-TG-CTA-CACTGAT-ATCGGGGCATGCAGT-CA-CATT--CTGTACT-AAC-AAAAGATAT-AT--CTGC-CATCAAAATAATCTAA-TGACT---TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT----TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCCTCTCATTC-TA-AATTAATTAGGT------TCTTTATAT-AT-TGT-----TATAAA-ATGCAAA--T-GCAAA-T-AA-A-AGGATAA--AA-CTTGG-AAAA-AAAACCAA-ATGC-ATTGAAG-------ATCA-A---------------------------A---A-----TGCAT-AA-AAATGTC-ACA-G--C---A-CT-G--T-T-TA--TGTT-T--CATGT-TT--TTGC-T-----TTC-AG-CA--GCCAA--TA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC-ACCTG--CG-G-T-----TG----------TA-TA--TCATA-TA--CG-GTATT--T------------TA------ATAC-A-GTT--CAAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA-----------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-T-GTG----GAC-ACCA-T-ATTTG--GA----C-AGGGAAC-AATG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AATT-CC--A--TGATG---AT--------------AC-T--CATGTTGTGAAG-CG---ATAC-GGGTAT-AG-AACCG-T--GACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctcccccccccccccccccccccc-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGT-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TACG-T-----TGATAT--AT--TA-GA--TCA-A-TA-GCG-ATATT--C-T-----T--AAT-------ATAT-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAACA-A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GACAG-C-CGGGACC-AATG-TAATGGGG-ACGTGCAATTC--GTCTTCT--------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG--------------GACG----T-----------CCAAT-T--CGTCTTCTG--G-CATTTATAC-AG---TCCGCCAGTA-TGGGAAT-CC-CTTTGAT---------GCG-AT-A-CGAGTA---CATT-CT-CATT--CTGTACT-AAC-AGGTGATAT-CT--CTGC-TATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-ttttaacgtacacaagattgattgtcctacactgatctactt
gi|7 : AT-----TTC-AT-CT--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG---------------------------------------GTATT--C-T-----T--TGAA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----AATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGACTAGT--CTTA-TTCT-T-GTAGT--GAC-AACG-TCATT----GA------CGTGACC-AATG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GT-------CA--CTT---ATA---T-CCGCCAGT-AT-G-GG-AAT-----------------AC-----------TC-AG-T--CATGTTGTTAAG-CG---ATACGGG---T-AGTGAGCG-T--GACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-ATATATTT--TTATAAA-ATGCAAT--CTGCAAA-T-AA-AAGGAATAA--AAACTTGG-AAAAATAA-CCAA-ATGC-ATTGAAA----TTAATTA-ATT-AATT-GAGAATA---GC--C-ATCAAT-A-----TGCAC-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TTGTTTGCAT-----TTC-AT-CA--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGATATG--AT--AT--TA-TA--TCA-A-TA-GCG-------------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC--A--------AACTTA--GT-----GGTAAG-----T-CTTC-acctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccT-CTACTCTGATCTA-TTAT-GCT-AA-ATCGGGGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGAAATAT
gi|9 : cgATCAAAATAATCTAA-TGGCT----TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGccattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
blockSeqs : T G . TCTTT TC A ATTG . A AA A A G A AATCATGGAAAAA A CAAT C GATT . TTT T G T TCTCCATCAATA G T T . TCAG C . GCT AC . TC GTA GT . A . A . TTTAAC T A TTA TT GCTATC TA C TA TTGATATGATAT C TT ATTACG AA CTTAATATCATA A CA AATGG . . . . A TAAA AG G CTTCC C G T CA T . G CA G T CGAC CAGCC A T C CA CGTTAACG AT . AGTC C C C C G TGATC CGC ACTCACTCTCACC C GG T TTT G GTATAGA . GG A ATA TGCTACACTG C GCATGC . . TG C A CTAC T A G ATT T AA ATACT A C GT T GA AT A ATTTTT ATACT A C GT T T C A T A T C . A C A T G G C T T
blockSeqs : . . . TT AT . AT . A . . . . . TAAACTTGGAAAC . CAT . . . TT . A T TCCATCATTA . . . . AG . . GT . . T ATG G . . . . . . A A T . T . . . TTGATATGA . . GTAG G CGTTAATATA . C . . . . . . AAA . G . . G T . . . . . . . TG CGC . . . . GTCACG . . AGT . . . . . AT . TGCG . . . . . TCCGCC . . . ATG CTATTATGCT . TAC . . . . . CCT . . G . G . A . . . T GA AA . TTAA A . . . T . . . . . . . . G T . A . . . T T
blockSeqs : . . . T T . TT . A . . . . . AAACTTGGAAAAA . CAA . . . TT . G T GCCATCAATA . . . . A . . TC . . . TGT . . . . . . . C A . . T . . . TTGATATTC . . ATAG A CTTTGAA . . . . . . . . AAT . G . . . T . . . . . . . . CC . . . . GTTACG . . AGT . . . . . AT . CCA . . . . . TAGTG . . . ACT GCG . GC . . . . . AT . . A . G . . . . . A . AT . TGT . . . . T . . . . . . . . . C . . . . . T T
blockSeqs : . . . T T . . . A . . . . . AACTTGGAAAA . CAA . . . TT . A T GCCCATTAT . . . . A . . GT . . . AT . . . . . . . T A . . T . . . TTGATTAAT . . TATA G CTTTGAA . . . . . . . . AAA . G . . . G . . . . . . . . CA . . . . GTCACG . . AGT . . . . . TT . TC . . . . . TAGTG . . . TG . GC . . . . . AT . . G . G . . . . . . . AT . TGT . . . . A . . . . . . . . . C . . . . . . T
blockSeqs : . . . . . . . . . CAA . . . C . A . AA . . . . A . . GC . . . TT . . . . . . . T A . . T . . . TTGATATAT . . ATAG G CTTTGAA . . . . . . . . AAA . G . . . T . . . . . . . . C . . . . GCCTCG . . AGT . . . . . AT . . . . . . . CT . GC . . . . . CT . . G . . . . . C . TT . . . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . A . . T . . . AT . . . . . . . C A . . T . . . TAATCAAT . . ATAG A CTTAAT . . . . . . . . A . G . . . C . . . . . . . . C . . . . TCCT . . AAT . . . . . AT . . . . . . . C . . . . . CT .
blockSeqs : . . . AT . . . . . . . T A . . T . . . TTG . . AG G TTA . . . . . . . . . . . . . . . . . . . . . . . C . . . . TA . . AGT . . . . . A . . . . . .
blockSeqs : . . . . . . T . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . GT . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . G . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : TT********* T** T*** AAACNTGGAAAAA*** CAA* NCCATCATTA************ ** ** AT** ***** ** ** ****** T******** TTGATATAT********** ATAG*** CTTTAA***************** *** AAA****** C****** GTCACG** *** GC**** NT*** ** AT TGT******
originalCons : NCCCCCCAT-C-TA-AATTAATTAGGT------T----AT-T-AT-TGTAT--GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAA--AA-CTTGG-AAAA-TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATA---GC--C-ATCA-T-A-----TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-T-----TG--AT--AT--TA-TA--TCA-A-TA-GCG-GTATT--C-T-----T--TGTA------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC--A----A-TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GA----C-CGGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC--CGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC---CAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGAAATATATCAAAATAATCTAA-TGGCT----T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
finalCons : NCCCCCCAT-C-TA-AATTAATTAGGTTT---------ATT--AT-TGTT---GTATAAA-ATGCAAT--TTGCAAA-T-AA-A-GGAATAAAAACNTGGAAAAA---TAA-CCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATANCCATCATTA------------TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CAAT--TT--TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATAT--------CT--ACAACC-ACCCG--TGCGTTGATATAT----------TA-TA--TCAATAG---CG-GTATTCTTTAA-----------------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAACAAA------TGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT----GAC------GGGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCTGTCACG--GGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-AC-T--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-AT-ATCGGGGC----AGT-CT-CATT--CTGTACT-AAC-AGATGATATNT---CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACC--AATATATCAAAATAATCTAA-TGGCTTGT------CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-T-AT-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA
Alignments
lowQualScore : 33333333333333333333 1 222222 1111 11111 1 11111 11 1111111 11111 11 222222 111 111111111 111111 4444444444444444 11111 11111 22222 33333333 11111 55555555555555 111111111 11 2222222222222 22222222 11111 111 22222 11 11111111 22222 1 1
lowQualScore : 8 8 8 0 33333333333333333333 8 8 0 6 3 99 6 6 3 444444 0 66 9999 5 4444 6 777 5 5 9999 6 66666 88888 1 0 5 5 77 22222 5 77 666 66 5 11 1111111 5 11111 8 4 00 66 555555 2 1 222 66 111111111 66 4 66 66 777 4 66 777777 77 66 4444444444444444 4 99 00000 4 4 4 777 4 4 777 777 2 11111 4 8 3 66 4 3 3 55 3 3 77 22222 3 44 3 3 3 44 77777777 44 555 7777 3 6 3 3 3 00000 777 88888888888888 5 66 0 5 888 8 444444444 8 11 0 6 999 4444444444444 66666666 5 5 77 5 5 22222 5 6 1 111 6 99 33333 6 8 11 6 99 2 0 33 6 77777777 33333 6 6 99 3 6 6 6 6 6 6 6 6 3 3 6 3 6 6 6 7 1
lowQualScore : . . . . .................... . . . . . .. . . . ...... . .. .... . .... . ... . . .... . ..... ..... . . . . .. ..... . .. ... .. . .. ....... . ..... . . .. .. ...... . . ... .. ......... .. . .. .. ... . .. ...... .. .. ................ . .. ..... . . . ... . . ... ... . ..... . . . .. . . . .. . . .. ..... . .. . . . .. ........ .. ... .... . . . . . ..... ... .............. . .. . . ... . ......... . .. . . ... ............. ........ . . .. . . ..... . . . ... . .. ..... . . .. . .. . . .. . ........ ..... . . .. . . . . . . . . . . . . . . . . . .
lowQualScore : 0 0 0 8 66666666666666666666 0 0 8 7 2 22 7 7 3 555555 7 11 4444 7 2222 7 333 7 7 3333 7 77777 77777 4 1 7 7 99 33333 7 99 999 99 0 99 2222222 0 11111 9 4 66 11 666666 7 9 222 11 666666666 11 4 11 22 888 4 11 444444 11 11 8888888888888888 0 55 00000 0 4 4 888 4 4 888 111 5 11111 4 9 4 11 0 6 6 00 3 3 99 55555 3 66 3 3 3 66 88888888 66 888 4444 3 7 3 3 6 00000 888 22222222222222 0 99 1 0 888 0 666666666 0 00 8 7 000 3333333333333 33333333 7 7 99 7 7 66666 7 7 0 777 7 22 33333 7 0 00 0 22 2 6 88 7 88888888 33333 7 7 22 5 7 7 7 7 7 7 7 7 3 7 7 3 7 7 7 3 7
consensus : NCCCCCCAT-C-TA-AATTAATTAGGT--T--CA-TAT-ATA-TAT-TG-T-ATAAA-ATGCAAT--TTGCAAA-TAA-A-GGAATAA-AA-CTTGGAAAAATAACCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATACC--CA-TC-----ATTA--TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-T--T-TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGAT---ATATTA-TA--TCAA-TA-GCG-GTATT--CTT--T-A----A------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC-AA---ATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT--GA-----C-G--GGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC-ACGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-A-CT--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-ATATCG--GG----GCAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACC--AANATATCAAAATAATCTAA-TGGCT---T-T--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
Reference ( family-781 ) : NCCCCCCAT-C-TA-AATTAATTAGGT--T--TA-T-T-AT--TGT-TG-T-ATAAA-ATGCAAT--TTGCAAA-TAA-A-GGAATAA-AAACNTGGAAAAATAACCAA-ATGC-ATTGAAA----TTAATCA-ATT-AATT-GAGAATANC--CA-TC-----ATTA--TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-T--T-TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGAT---ATATTA-TA--TCAA-TA-GCG-GTATT--CTT--T-A----A------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC-AA---ATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT--GA-----C-G--GGACC-AATG-TAATGGGG-ACGTCCAATTC--GTCCTCT-GTC-ACGGGCA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---AT-----------CC-A-CT--CATGTTGTGAAG-CG---ATAC-GG---T-AGCGAGCG-T--GACT-TTACGTTGGT-TG-CTATCGCT-ATATCG--GG----GCAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-NT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACC--AATATATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-GTGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|1 : TT-AATT-GAG-ATACT--CGCTCCTCATATTAACTGCATAAACAAATG-A-CCAAGGCC---C-CT-GTCTGG-TC--TTTTAT--CA-A--A--T-TTGCATCCCCCTTCGATACAATGCTAAGTTAATAATTTATTCGA-AATTG-TTTT---CA--CGCGAA-----TAGGCA--ACAACC-ACCCG--TGCGAGTGAA---ATACTC-CA--TC-------CG-ATATTTGCTT--T-T----ATTATCTATAC-ATGTT--CAGT-----TTGTATCTTTATTGTGTATAGTGAAT-TGAAC-AACTCATGAATGTT--ATCATCAGGCAAA-----T-CTTC-CG-TGATTAGT--CTTA-TTCTGT-GTGGT--GAC-ACCA-TCATT--GACGGGCC-G--GGACC-AAT--TAAT-GGG-ACGTCCAATTT--GTCTTCT--T-----GGCA--TTTAACATACAGA-TCGCCAGT-ATGG-GG-AATC-CC--AA-TGATG---
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgatt-CTAT---T-ATGTTGACGC----GCAGTTCTGCATT--CTGTACT-AAC-AGATGATAT-C-----------------AATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACC--AAAATATCAAcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattctgtactaacagatgatatcaatctaatgcttttcagtatatcattagattgtcaatataccaaaatatcaatccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|1 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatTGTACT--AACAGATGATATCAATCTAA-TG-CT---TTT--CA-----GTA-TATCAT-TAG--ATTGTCAATATACCAA-AA-TA-T-CAAT-CC-ACG-GTGTAGCAT-ATTGGTCTCCTCTT-CTCA-T-AT-T-TATTCG-TAAGACAGCTGTtccacggtgtagcatattggtctcctcttctcatatttattcgtaagacagctgtaa
gi|10 : tgtgccatgttcgatgaaagctatcgttaagaattcgtcttaagattatgtctaaatatatccttaagacattagtcttaagtggaccagtctgaaaggacatatctggtggatgtaaaaccgaaagctgtcttagacatattcttaagtaacgacattcttaccagttaagtaggttatctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatttcacgtttcagtttgttgtaacttcaaattgttagcccccccccccccgccccctgcccagttgcttatagatatactagcttttcaactatattggtatttgctggtgaaaatgctataatatctgatcggcactatcataaataacgattggaaagtcagcattaagcgtacgttcacagacggtgccaatttaatatgattttaattgagatactcgctcctcatattaactgcataaacaaatgaccaaggcccctgtctggtcttttatcaaatttgcatcccccttcgatacaatgctaagttaataatttattcgaaattgttttcacgcgaataggcaacaaccacccgtgcgagtgaaatactccatccgatatttgcttttattatctatacatgttcagtttgtatctttattgtgtatagtgaattgaacaactcatgaatgttatcatcaggcaaatcttccgtgattagtcttattctgtgtggtgacaccatcattgacgggccgggaccaattaatgggacgtccaatttgtcttcttggcatttaacatacagatcgccagtatggggaatcccaatgatgcgatgcgagtagtaagttggattgtctaacatcaccagtaagaataggctgtctgtgctatacttatctattatgttgacgcgcagttctgcattc--TATT-T--TA-GTAT--C-TTGCAT-----TTT-AT-CA--GACAA--TAATA------TCGATAATTGATTTT---CC--CTCAGA-----T---CT--AGAATC-ACCCG--TGCG-TTGAT---ATGATA-TA--TCAG-TA-GCA-GTATT--CTT--TGA----A------ACACAATAAT--TAGTAATGGTT-TAATTCTaa
gi|12 : tcacagctaaacttttcataggtctttct------ATAG-ATTTT--CAGT-----TT-AAACTTTA-TGTG-AGA---AAT-TGAAC-AA---ATGAATGTA--ATCATCAGGCAAT-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGTCAGAC-ACCA-TCAT-----------------------------TGGGG-ACGTCCAATTC--GTCCTCT-GTC-ACGGGCA--TTT---ATATAGT-CCACCA
gi|13 : tATCAAA-CAATCTAA-TGGCT---T-T--CA-----ATA-TACCAT-TAG--ATTCTCAATATAC-GA-AA-TAAT-CCAT-TC-ACG-ATGTAG-ATAATCAGTCTCCTCTT-CTCATT-AT-TCTA-TCGTTAA-ACAGCT
gi|14 : tgccAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GCGGT--GAC-ACCA-TCATT--GA-----C-G--GGACC-AATGTTAATGGGG-ACGTCCAATTC--GTCTTTT--------GGTA--TTT---ATACAGT-CCGCCAGT-AT-G-GG-c
gi|15 : T-T-GTGGT--GAC-ACCA-TTATT--GA-----C-G--GGACC-AATG-TAACAG----CATCAAATTC--GTCCTCT-GTT-ACGGGCA--TTT---ATAC----------------G-GG-AATT-CC--AT-TGATG---AT--------------A-CT--CATGTTGTGAAG-CG---ATA
gi|16 : AC-ACCA-TCATT--GA-----C-G--GGACT-AAAG-TAATGGGA-ACGTCCAATTC--GCCCTCT-GTC-ACGGGGA--ATT---ATAC----------------G-GG-AATC-TC--AT-TGATG---AT--------------A-CT--CATGTTGTGAAG-CG---ATA
gi|17 : A-TTCT-T-GTGGT--GAC-ACCA-TCATT--GA-----C-G--GGATC-AATG-TAATGGGA-ACGTCCCATTC--GTCTTCT--------GGCA--TTT---ATAAAGT-CCGCCAGT-AT-G-GG-AATC-CC--TT-TGA
gi|18 : -CTATCGCT-ATATCG--GA----GCAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-AT--CTGC-CATCAAAATAAT
gi|2 : gtctaacgtcacaattgatgcgtctactgtgatCCCCAAT-C-TACAATTAATTTGGTATT--CAGTAT-AT--TGT-TG-T-ATAAATATGCA-T--TTGCAAA-TAA-A-AGGATAA-A----T-------TAAC-----TGC-AT-AAAA----TTAATTATATTTAATTTGAGGAAGCC--CA-TT-----ATT----GCATGAATAAATG-CTACAAG--CTCAG-CT-G--TGT-TA--TGTT-TT-CA-ATGT--TGTTGCAT-----TTC-AT-CAA-GCCAA--TAATA------TCGCAAATTG--TTT---CT--TGCATAGCTATC---CT--ACAACCCACCCG--TGCG-TTGAT---ATTCTA-TATTTCA---A-GCGAATATT--CGT--T-AATATA------ATAC-TTGTTC-CAGT-----TT-TAA-TTTA-TGTG-AT----AAT-TGAAC-AA---TTGAATGTAAGATCATCA---AAA-----TCCTTCGCGTTGATTAGG--TCTA-TTCT-TGGTTGT--GACGACCA-TCATT--GA-----C-GCCGGACCAAATG-TAATGGGA-ACG-CCAATTC--GT-CTCT------TAGGCA---TT---ATACAGT-CCGCCAGTCATCG-GA-AAGC-CCTGATCTGATGCGCATTG---------CG-A-TTGGTATGTTG-GATGTCT---A-AC-GG---T-CACAATCGAT--G-CG-TTACAATGAT----CTATCA-T-ATATTG--GA----GCAGT-CT-CATT--CTTAACT-AACAAGATGATATCCT--CTGC-CATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACC--AATATATCAA
gi|2 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaATCAAAATAATCTAA-TGGCT---T-TAACA-----GTA-TATCAT-TTGGTATTATCAATATACCAA-TA-TA-T-CAAT-TCTACGCGTGTAA-AT-AT-GGTCTCCTCTTACTCA-TGAT-T-TATTCGTTAAGACAGCttctacgcgtgtaaatatggtctcctcttactcatgatttattcgttaagacagcgtta
gi|21 : aatatacatatgcaataagaaaactgtgccaattgttctatgaataatcctaaattctcttaagattatgtgccttgaagatatatcttcagaatatcttgccagtctgagaattactcctagatgctaaacgaaagctgtccagacatattctttaagttacgacataagtatagttatctagtgaaaatcaagctttcctttgtgcattaaattacatggaatcattccacgtttttttcatggtagccctcccctcgcctccaccccaatctacaattaatttggtattcagtatattgttgtataaatatgcatttgcaaataaaaggataaattaactgcataaaattaattatatttaatttgaggaagcccattattgcatgaataaatgctacaagctcagctgtgttatgttttcaatgttgttgcatttcatcaagccaataatatcgcaaattgtttcttgcatagctatcctacaacccacccgtgcgttgatattctatatttcaagcgaatattcgttaatataatacttgttccagttttaatttatgtgataattgaacaattgaatgtaagatcatcaaaatccttcgcgttgattaggtctattcttggttgtgacgaccatcattgacgccggaccaaatgtaatgggaacgccaattcgtctcttaggcattatacagtccgccagtcatcggaaagccctgatctgatgcgcattgcgattggtatgttggatgtctaacggtcacaatcgatgcgttacaatgatctatcatatattggagcagtctcattcttaactaacaagatgatatcctctgccA-ATGCAAT--TTGCAAA-TAA-AAGGAATAA-AATCATGGAAAAATAACCAT-ATGA-ATTGAAgtta
gi|22 : TGGAAAAATAACCAA-ATGC-ATTGAAA----TTAAATA-ATT-AATT-GAGAATA
gi|23 : -AT-G-GG-AATC-CC--AT-TGATG---AT--------------A-CT--CATGCTAGAAAG-CG---ACA
gi|3 : CCCCCAT-CGTA-AATTAAT-AGGT--T--TA-T-TCATAGTAT-TGGT-TTAAA-ATGCAATAATTGCAAA-TAAGA-GGAATAA--------------TAAC-----TGCCATTAAAAGATTTCAATCA-ATT-AATT-GAGGATATC--CA-TC-----ATTA--TGCAT-AATAAATG-C-ACAAG--C---AGCTCG--TGCTTAACTGTT-TTCCA-AT-T--T-TTGCAT-----TTCAAT-CA--GCCAA--TATTATTTAACTCGACAATGGATTTTTTACATTCGCATA-----T---CCTAACAACC-ACCCGTATGCG-TTGAT---TAATTACTA--TCAATTACGCG-AGATT--CTTAAT-ATCATA------ATAC-ATGTTCACAGT-----TT-TAATTTTA-TGTG-ATA---AACATGAACTAA---ATGAATGTA--ATC-TCA--CTAACTTCCC-CTTCGCGTTGA-TAGTCACTTATTTCT-T-GTGGT--GAC-ACCATTCATTC-GACGGC-C-G--GGATC-AATG-TAATGGGGCACGTCCAATTC--GTCTT----TC--CTGGTAATTTT---ATACAGTCCCGCCAGT-AT-GCGGCAATCGCC--A
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccct-ATATCATCGA----GCAGT-CT-CATTTGCTGTACTCAAC-AGATGCTAT-CTACTTGCTCATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACC--AATAcgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcatcaaaaaattctaaatggctatttttcaagtaatatcatctagatgtcaatataccaataactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|3 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcATCAAAAAATTCTAAATGGCTATTTTT--CAA----GTAATATCATCTAG--AT-GTCAATATACCAATAACTA-TTCCATATC--CG-GTGTAG-ATGATTGGTCTC-TCTT-CTCAAT-ATGT-TATTCGTTAAGACAGCTGTactattccatatccggtgtagatgattggtctctcttctcaatatgttattcgttaagacagctgt
gi|4 : agtaggttatctatagtgcaaaaagtcatcagtggttcagcttttgtcaaataaacatggaatcattcagagttttgttgttcaaacaagaatggtaccccaccccctcccccatcgtaaattaataggtttattcatagtattggtttaaaatgcaataattgcaaataagaggaataataactgccattaaaagatttcaatcaattaattgaggatatccatcattatgcataataaatgcacaagcagctcgtgcttaactgttttccaatttttgcatttcaatcagccaatattatttaactcgacaatggattttttacattcgcatatcctaacaaccacccgtatgcgttgattaattactatcaattacgcgagattcttaatatcataatacatgttcacagttttaattttatgtgataaacatgaactaaatgaatgtaatctcactaacttccccttcgcgttgatagtcacttatttcttgtggtgacaccattcattcgacggccgggatcaatgtaatggggcacgtccaattcgtctttcctggtaattttatacagtcccgccagtatgcggcaatcgccacgcgattgcgatgcgaagtagtagtttcagacttgtcctacacgtccaagtttgatgcgtcttccactgaactaattatgttcatatcatcgagcagtctcatttgctgtactcaacagatgctatctacttgctcCTCTCCTT-C-TT-CATTGATTAGGT--T---A-T-T-AT--TACATG-T-AT-----TG---T--TTGCAAAATAA-A-GGAATAATAAACTTGGAAAC-TAACCAATATGC-ATTGAAA----TTGATCA-AC---ATT-GAAAATATCTCCA-TC-----AATA--TGCAT-AATAAATG-C-ACAAG--C---A-TT-G--TTC-TA--TGTT-T--CA-TT-T--T-TTGCAT-----TTT-AT-CA--GCCGA--TAATA------TCAATAATTGATTTT---CA--CGCATA-----T---CT--ACAATC-A------------TAAT---CAATTA-TA--TCAA-TA-GCG-GTATT--CTT--TGA----A------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---ATT-TGAA--A------------------ATCAGGCAAA-----T-CTTC-CATTGAGTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCAAT--GA-----A-G--GGACC-AATT-TAATGGGG-ACGTCCAATTC--ATCCTCT-GCC-TCGGGTA--TTT---ATACAAT-CCGCCAGT-AT-G-GG-AATC-CC--AT-TGATG---ATACTCACTCTCACC-ACCT--CATGTTGTGAAG-CG---ATAC-GG---T-AGTGAGCG-T--GACCATTATATTGGT-TG-CTA-CACTGATATCG--GGGCATGCAGT-CA-CATT--CTGTACT-AAC-AAAAGATAT-AT--CTGC-CATCAAAATAATCTAA-TGACT---TGT--CA-----ATA-TACCAT-TAG--ATTGTCAATATACCGAAATGGATCAAAATAATCTAA-TGGCT---TGT--CA-----ATA-TAGCAT-TAG--ATTGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-CTCA-T-AT-T-TATTCGTTAAGACAGCTGT
gi|5 : tCCTCTCATTC-TA-AATTAATTAGGT--T--CT-T-T-ATA-TAT-TG-TTATAAA-ATGCAAA--T-GCAAA-TAA-A-AGGATAA-AA-CTTGGAAAAAAAACCAA-ATGC-ATTGAAG-------ATCA-A-----------------------------A--A--TGCAT-AA-AAATGTC-ACA-G--C---A-CT-G--T-T-TA--TGTT-T--CATGT-T--T-TTGC-T-----TTC-AG-CA--GCCAA--TA-TA------TCGATA-TTGATTTT---CA--CGACTA-----T---CT--ACAACC-ACCTG--CG-G-TTG-T---ATATCA-TA--T-------ACG-GTATT--TT----------A------ATAC-A-GTT--CAAT-----TT-TGATTTAA-TGTC-ATA---AA--TGA---------------------CATC-GGCAA---------------------AGT--CTTA-TT-T-T-GTG----GAC-ACCA-T-ATTTGGA-----CAG--GGAAC-AATG-TAACGG----CGTCAAATTCCATTCCTCTCGTTAACGGGCA--TTT----TAC------------------GG-AATT-CC--A--TGATG---AT--------------A-CT--CATGTTGTGAAG-CG---ATAC-GGGTAT-AG-AACCG-T--GACT-TT-TGTTGGT-T
gi|6 : aatatgtcacgcagtaaaacaactaagtgggcatgttccataatgcagtgaagtatcttaaatatgtctaaagtatcttaagacaagttcatatgatccgtctgagacaaactgaaaactgtctgagacatatcttaagttacgacatcttaaagtaggttatctgtgaaaatcagtgattatttgtcaaatcaacatcggatcttcacgtttttgtttcaaaggactcgatagctccccccccccccccccccccccA--TGCAT-AATAAATG-C-ACAAG--C---A-CT-G--TGT-TA--TGTT-T--CA-AT-T--T-TTGCAT-----TTC-AT-CA--GCCAA--TAATA------TCGACAATTAATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TACG-TTGAT---ATATTA-GA--TCAA-TA-GCG-ATATT--CTT--A-A----T------ATAT-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC-AA---ATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGATTAGT--CTTA-TTCT-T-GTGGT--GAC-ACCA-TCATT--GACAGC-C-G--GGACC-AATG-TAATGGGG-ACGTGCAATTC--GTCTTCT--------GGCA--TTT---ATACAGT-CCGCNAAA-AT-G-GG--------------GACG----T-----------CCAA-TT--CGTCTTCTG--G-CATTTATAC-AG---TCCGCCAGTA-TGGGAAT-CC-CTTTGAT---------GCG-ATA-CG--AGT---ACATT-CT-CATT--CTGTACT-AAC-AGGTGATAT-CT--CTGC-TATCAAAATAATCTAA-TGGCT---TGT--CA-----GTA-ttttaacgtacacaagattgattgtcctacactgatctactt
gi|7 : AT-----TTC-AT-CT--GCCAA--TAATA------TCGATAATTGATTTTT--CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG--------------------------------GTATT--CTT--TGA----A------ATAC-ATGTT--CAGT-----TT-TAATTTTA-TGTG-ATA---AAT-TGAAC-AA---ATGAATGTA--ATCATCAGGCAAA-----T-CTTC-CGTTGACTAGT--CTTA-TTCT-T-GTAGT--GAC-AACG-TCATT--GA-----C-G--TGACC-AATG-TAATTGGG-ACGTCCAACTC--GTCCTCT-GTC-AC--------TT---ATA---T-CCGCCAGT-AT-G-GG-AAT-----------------AC-----------TC-A-GT--CATGTTGTTAAG-CG---ATACGGG---T-AGTGAGCG-T--GACT-TTATGTTGGA-TGTCTA
gi|8 : CCCCCCAT-C-TA-AATTAATTAGGT--TATTA-TAT-AT--T-T-T--T-ATAAA-ATGCAAT--CTGCAAA-TAA-AAGGAATAA-AAACTTGGAAAAATAACCAA-ATGC-ATTGAAA----TTAATTA-ATT-AATT-GAGAATAGC--CA-TC-----AATA--TGCAC-AATAAATG-C-ACAAG--C---A-CT-G--TGC-TA--TGTT-T--CA-AT-TTGT-TTGCAT-----TTC-AT-CA--GCAAA--TAATA------TCGATAATTGATTTT---CA--CGCATA-----T---CT--ACAACC-ACCCG--TGCG-TTGATATGATATTA-TA--TCAA-TA-GCG-----------------------------------------GT-----TT-TAATTGTA-TGTG-ATA---AAT-TGAAC-AA---Aacctcacaattgattgattatttaattattgttttacgtaatga
gi|9 : acgtttttgttaaaatgatagcccccT-CTACTCTGATCTA-TTAT-GCT-AAATCG--GG----GCAGT-CT-CATT--CTGTACT-AAC-AGATGATAT-CT--CTGC-CATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACC--GAAATATCcttagtggtaagtcttc
gi|9 : cgATCAAAATAATCTAA-TGGCT---TGT--CAATACTGTA-TACCAT-TAC--ATAGTCAATATACCGA-AA-TA-T-CCAT-TC-ACG-ATGTAG-AT-ATCGGTCTCCTCTT-GCCA-T-A--T-TA-TCGCTAGGACAGCTGcattcacgatgtagatatcggtctcctcttgccatattatcgctaggacagctgctagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GGGCATGTTAATGATTCAAAGTATGTTAAGATCGTCTAAGACATGTCCTAAGATGTATTAAAGACATATCTTATGACCAGTCGGAAACAATATCTTAGATGTAAACCGAAGTTGTTCTGAGACATATCTAAGTTACACCACACTTAAGTAATGCTATC
Unaligned ( gi|19 ): GTGTTTCAGCTTTTGTCAATATAACTTGGAAGCATTCCAAGTTTGGTTTATATTGGTAGAAATGGCTCAGCAACCCCCTCCC
Unaligned ( gi|20 ): CCCCCCCCCCCCCCCCCCCCCCATTCTAAGCATTTTTTAGTTTCCTTATATATGTACTGTTATACAA