lowQualScore : 1111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 1111 3333333333333 22222 222222222222 777777777777777777777777777777777 11 11111 1111 555555555555 1111 11 44444444444444444444444444444 1111 111 11111111111111111111111111111111111111111111111111111111111111111111 1 333333333 1 111 444444444444444 1 111 2 555555555555555555555555 1 33333 333333333333333 4444444444 11 66666666666 6666666666666666666666 2222 44444 11 3333333333 33333333 111 44444444444444 11 2222 222 1 333 1 333 333333333 11111 1 111 1 333 7777777777777777777777777 22222 2 5555555555555555555 2 111 1111 1111 111 1111 1111 33333333333333333 2222 1111111 11 11111 777777777777777777777777 3333333333 111 3333333333333333 333333333333333 2222 111 1111 3333 3333333333333333 11 2222 2222222 33333333333 666666666666666666666 111 111111 22222 222222222222 99999999999999999999999999999999999999999999999999999999999999 111 22222222 3333333333 1 2222 111 11111111111 33333333333333333333333333333 333333 3 111 2
lowQualScore : 6 2222222222222 33 2 2 666 2 5555 2 55555555 5555 33 1111 1111111111111 22 2 2 2 2 5555 2 2 444 99999999999 2 33 2 88888 3 3 3 000000000000 111111111111111111111111111111111 66 55 66666 4 0000 7777 666 444444444444 7 88 3 3333 3 7 88 66666666666666666666666666666 4 4 4 7777 8 8 4 333 5 5 0 33333333333333333333333333333333333333333333333333333333333333333333 99 7 4 555555555 4 3 8 9999 5 777 5 1 333333333333333 0 6 55 0 777 0 111111111111111111111111 3 33333 7 00 888888888888888 2222222222 33 55555555555 0 11 3 7777777777777777777777 4 888 0 3333 555 5 77 66666 5 1 88 6 00 2 5 1 5 9 8888888888 5 4 11111111 99 6 111 6 2 77777777777777 66 6 9 3 3333 111 5 111 3 555 000000000 33333 0 111 3 8 8 6 111 6 6 6 6 6 6 6 7 6 99 8888888888888888888888888 8 88888 8 6 6 6 1111111111111111111 3 000 5 1111 1 1 5 2222 000 5 2222 66 5 0000 5 5 99999999999999999 5 6 4 4 1111 6666666 5 5 33 66666 6 6 222222222222222222222222 6 6 4444444444 3 99 99 111 0000000000000000 99 77 444444444444444 0000 88 111 99 6 4444 6 6 99 4444 99 6666666666666666 11 3333 8 6666666 1 99 6 99 11111111111 1 99 6 555555555555555555555 111 999999 6 6 6 6 33333 1 6 6 999999999999 88888888888888888888888888888888888888888888888888888888888888 444 8 8 00000000 8 7 0000000000 0 5 1 1111 333 66 9999 77777777777 11111111111111111111111111111 3 3 4 66 66 2 444 66666 444 2 5 2 111111 33 2 2 66666 55555 33 444 33 5555 444 5555 2 5555 2 666 4 2 33 5555 2 2 2 555 2 777777 2 2 66 2 33 4
lowQualScore : . ............. .. . . ... . .... . ........ .... .. .... ............. .. . . . . .... . . ... ........... . .. . ..... . . . ............ ................................. .. .. ..... . .... .... ... ............ . .. . .... . . .. ............................. . . . .... . . . ... . . . .................................................................... .. . . ......... . . . .... . ... . . ............... . . .. . ... . ........................ . ..... . .. ............... .......... .. ........... . .. . ...................... . ... . .... ... . .. ..... . . .. . .. . . . . . .......... . . ........ .. . ... . . .............. .. . . . .... ... . ... . ... ......... ..... . ... . . . . ... . . . . . . . . . .. ......................... . ..... . . . . ................... . ... . .... . . . .... ... . .... .. . .... . . ................. . . . . .... ....... . . .. ..... . . ........................ . . .......... . .. .. ... ................ .. .. ............... .... .. ... .. . .... . . .. .... .. ................ .. .... . ....... . .. . .. ........... . .. . ..................... ... ...... . . . . ..... . . . ............ .............................................................. ... . . ........ . . .......... . . . .... ... .. .... ........... ............................. . . . .. .. . ... ..... ... . . . ...... .. . . ..... ..... .. ... .. .... ... .... . .... . ... . . .. .... . . . ... . ...... . . .. . .. .
lowQualScore : 7 0000000000000 44 5 5 999 5 3333 5 44444444 3333 44 0000 8888888888888 66 4 5 5 5 3333 5 5 444 77777777777 7 99 9 44444 3 3 6 555555555555 555555555555555555555555555555555 99 00 66666 0 0000 7777 444 000000000000 3 66 6 8888 6 3 55 88888888888888888888888888888 0 0 4 8888 9 9 1 999 0 0 4 22222222222222222222222222222222222222222222222222222222222222222222 88 8 4 666666666 4 3 9 4444 0 555 7 0 000000000000000 8 5 00 0 555 0 000000000000000000000000 3 33333 3 55 555555555555555 8888888888 88 22222222222 8 44 2 2222222222222222222222 6 888 6 5555 777 7 99 11111 0 4 77 7 88 5 7 7 0 7 0000000000 2 3 00000000 22 7 777 7 5 55555555555555 55 7 3 5 4444 555 5 000 3 000 888888888 55555 0 000 0 0 0 0 666 7 7 7 7 7 7 7 3 7 22 3333333333333333333333333 0 00000 0 7 7 7 7777777777777777777 0 000 0 4444 3 3 7 1111 000 7 1111 99 0 6666 0 0 55555555555555555 0 9 0 0 7777 2222222 0 0 66 77777 7 7 000000000000000000000000 7 7 8888888888 5 22 22 777 3333333333333333 22 77 333333333333333 8888 33 777 22 7 2222 7 7 22 0000 22 8888888888888888 00 2222 0 0000000 0 22 7 22 77777777777 7 22 7 888888888888888888888 777 888888 7 7 7 7 77777 0 7 7 333333333333 66666666666666666666666666666666666666666666666666666666666666 000 0 0 22222222 0 0 2222222222 0 7 4 7777 888 99 0000 33333333333 22222222222222222222222222222 3 3 8 33 33 7 777 22222 444 5 0 5 111111 44 5 5 22222 99999 22 444 44 3333 444 3333 5 3333 5 999 2 5 44 3333 5 5 7 777 9 888888 9 9 88 9 66 2
consensus : CTC-GTCATAGCTCTCA-ACGGAGTAAGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGG---CA---G---------TGGG-AG-GA-G-TCA-A----CAAA-CAA-A---A-----CAA---C-CCTTTGA--C-GCT--G-TCATCG-CTAA-G-T------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AG-AN---TAAT----CTCG---G--GA--------GCAT-GCAT--GTATATGA-TTTT--T-A-AA-GTATATTTG--TAC------A--TTT--ACA--GAAACACTTC-A-TCAAGGTCA-TATAT-TAATTGTA-AATGA-ACTAGAATCAA--CT-CTAAAA-TAG-AT---AATC-ATTGT-AGGATACTG-ATTACTA--GCC-AGG---A--TTTT---TTTT-ATTTGG-TCA-CCCCCTCC-CCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAACTACCTATTCATAG----CATTNNGA-CG---AAA-TTTAC-TT-----TTAACGGATCCTGC-GTACATANA--AGACAAATC--AAANCGGNCGTT--CATC----TCC---CACCGCACACAAACACGCAGACA------CA-AG-CGC--GTATTTATATTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGCT--A-TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA---CC-ATAATCTCTCTCTCTCTCTG------AAATTAA--CAT-TG---CGATTTTGCCTGAG---CGATGAT--GGATGT-TATGTTTAGA-TTCTGCCTACTAATATTATACGCTTTATAATCGATCTTTTTTTGCAAATACTCTCT-CTCTACGCTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ANAATATTTGAAT-AATT-CCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCT-------AC-TACGCA----CACT-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-GT----TTT--AA-AAC----TCA-CGGAG-ACTT----ATAGC-ATATG-CTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAG--ATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTA--CACAG--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AACTTTTCGG-TAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAAT------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCCA-C--GACCGC---AA--CAA--T-TACTTTC-----------CC--------------ACA------------CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---T-TT-GTT-T--G-T-T--G-A-CT-----CC-----TCCCA--CTG---CCC--A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TNT----G-AG-AGCTA--TG-AC-GAG-TTTAGCTG
Reference ( gi|2 ) : CTC-GTCATAGCT-------------AGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGG---CA--GG---------TGGG-AG-GA-G-TCA-A----CAAA-CAA-A---A-----CAA---C-CCTTTGA--C-GCT--GTTCATCG-CTAA-G-T------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AG-AT---TAAT----CTCG---G--G---------GCAT-GCAT--GTATATGA-TTTT--T-A-AA-GTATAATTG--T--------A--TTT--ACA--GACA-ACTTC-A-TCAAGGTCA-TATAT-TAATTGTA-AATGA-ACTAAAATCAA--CT-CTAAAA-TAG-ATTTTAAT--ATTGTTAGGATA-TG-ATTACTA--GCC-AGG---A--TTTT---TTTTAATTTGGGTCA-TCCC-TCC-CCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAA-TACCTATTCATAG----CATTAAGAATG---AAAATTTAC-TT-----TTAACGGATCCTGC-GTACATATA--AGACAAATC--AACTCGGACGTT--CATC----TCTGGATACCGCACACAAACACGCACGCA------CA-AA-GGC--GTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGCTTAA-TTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA---CCAATAATCTCTCTCTCTCTCTG------ATATTAA--CAT-TG---CGAGTTTACCTGAG---CAATGAT-TGGATGT-TATGTTTAGA-TGCTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGC-A-TACTCTCT-CTCT---CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATT-C-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GC--------AC-TACGC-----CACT-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----GTAGC-ATATT-CTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCACCT--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAG--ATC--AA---GAGCCGG--ATAT-AT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AATTTTTCGG-TAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCCA-A--GACCGC---AA--CAA--T-TACTTTC-----------CC--------------ACA------------CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---T-TT-GTT-T--T-A-T--G-A-CT-----CC-----TCCCA--CTG---CCC--A----AT---G----AGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----G-AG-AGCTA--TG-AC-GAGTTTTAGCTG
gi|1 : CTCAGTCATAGCTCTCACACGGAGTAAGCGCTCATT--G-GTC-TGAGCAT--AT-TT----GA-ATCT----C---AT----T--GGG---CA--GG-----------GG-AG-GA-G-TCATA----CAAA-CAACA---A-----CAA---C---TTTGA--CCGCT--GT-CATCG-CTAA-G-T-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----AT-AT---TAAT----CTCG---GTGA---------GCAT-GCATT-GTATATGA-TTTTATT-A-AA-AGATA-TTGAAC--------A--TTT---CA--AA-A-ACTTCTA-GCAAGGTCA-TA-AT-TAATTGTA-AATGACACTAAAATCAA--CT-CTAAAA-TAG-TTATTTATCCATT--TAGGATACTG-ATTACTAA-GCC-AGG---AATTTTT---TTTTTATTTGG-TCA-CCCCCTCC-CCGCT---------TT-CTC-AT-CTACCGTGGATT-AG---GCCACTGCC-TTACATG----------T----GTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAACTACCTATTCATAG----CATTTAGA-TG---AAA-TTTAC-TT-----T-AGCGGATCCTGCCGTACA-ATA--AGACAAATTCAAAATCGGACGTT--CATC----TCT-GATACCGC-CACAAATACGCACGCA------CACAACGGC--GTATTTATACTCGTT-T-GATTTAACTAGTAG-TATTTAAGCTTTCAAAA--CGCTTAATTTAATACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA---CCAATAA
gi|7 : atgcaaaaatacttacttttcaaattacgtcacagcataCTC-GTCATAGCTTCACAACGAAGTAAGCGCTCATT--G-GTC-TGAGCAGCCAC-TT----GA--TCT----C---AT----T--GG----CA--AG---------TGGG-AG-GA-GGTCA-A----TGAA-CAA-A---A-----CAA---C-CCTTTGA--C-GCT--TGTCATCG-CTAAGG-T------------GTGGGAAA----------------GT---------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|8 : attagaattaattcagtttacctatgctttctgtcacattgcatttatctcatacatgcactacgacacttacacggcactgttttactgagcacgagtttcttgatttaatagaacgtagaatcagagcgttatttttaaaaattcacgggacttatagcctatgctgcaattttatgttgagaaaacaaaagtggacgtggccaatgcaccttgatgcaggtactgttgtatgtataaaattcaagatcaagaatcgatattattatggaatagacgaaaaccctacacttacacaggtctgtaaataaaaaaatacagttgtcatttttaatttgtgatgcgtttgttgttgctgtttttaatttttggtaaatggagtctctcatatcatataaagtaataaagcatttttatagtgctaagaaatgttgattaaacaacttgttatttaactattccacaaccgcaaacaattCTC-GTCATAGCTCTCACACGGAGTAAGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGA---C----G---------TGGG-AG-GA-G-TCA-A-----AAA-CAA-A---A-----CA----C-CCTTTGA--C-GCT--GC-CATCG-CTAA-G-T------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AG-AT---TAAT----CTCG---G--GA--------GCAT-GCAT--GTATATGA-TTTT--T-A-AAAGTATATTTG--T--------ACATTT--ACA--GAAA-ACTTC-AATCAAGGTCACTATAT-TAATTGTA-A-TGA-ACTAAAATCA---CT-CTAAAA-T----------C--ATTGT-AGGATACTG-ATTACTA--GCC-AGG---AGTTTTT---TTTTAATTTGG-TCA-CCCCCTCC-CCGCT---------TTACTCCAT-CTAC----GATT-AG---GCCACTGCC-TTACTTG----------T----GTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTACAAAA-TATT-A-AACATCTtttagatgtgataatttgaaaagtacagattttgcatc
gi|10 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaCTC-GTCATAGCTCTCAAACAAAGTAAGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGG---CA---G---------TTGG-AG-GA-G-TCA-A----CAAA-CAA-A---A-----CAA---C-CCTTTGA--C-GCT--G-TCATCG-CCAA-G-T------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AG-AG---TAAT----ATCG---G--GA--------GCAT-GCATACACATATGA-TTCT--TAA-AA-GTATATTTG--TACATGTACA--TTT--ACA--GAAACACTTC-A-TCAAG
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTCAAACAAAGTAAGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGG---CA---G---------T----------G-TCA-G----CAAA-CAA-A---A-----GAA---C-CCTTTGA--C-GCT--G-TCATCG-CCAA-G-T------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAG-AG---TAAT----CTCG---G--GA--------GCAT-GCAT--GTATATGG-TTTT--TAA-AA-GTATATTTG--TAC------A--TTC--ACA--GAAACACTTC-A-TCAAGGTCA-
gi|21 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaaCTC-GTCATAGCTCTCACACGGAGTAAGCGCTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GGG---CA---G---------TGGG-AG-GA-G-TCA-A----CAAA-CAA-A---ACTGTGCAA---C-CCTTTGA--C-GCT--G-TCATCG-CGAA-G-
gi|1 : tagatgcaaaatactgtaacttttcaaattacatcacagctaaa-------------AGCGCTCAT---G-GTC-TGAGCA---AC-TT----GA-AT-T----C---AT----TACGGG---CA--GA---------TG---AG-GA-G-TCA-A----TAAAACAA-A---A-----CA----C-CCTTTGA--C-GCT--G-TCATTG-CT-A-G-T------------GTGGGACA----------------GT---------------AAAAT-------TGTTGCGG--TCTT----GGAATACGTAATATACCCC-----------------ACAG-GC-T--GT---TGA-------T-ACAA-GCAT-ATTG--T-----------CTT--ACA--AAT--ACTTA-A--AAATGCCA-TTTAT-TACTT-TA-TATGATATTGAAA
gi|24 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtct-------------AGCACTCATT--G-GTC-TGAGCA---AC-TT----GA-ATAT----C---CT----T--GGT---CA---T---------TGGG-AG-GA-G-TCA-A----CACA-CGA-A---A-----CCG---C-GCTTCGA--C-GCT--GTtactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|23 : cattacggctaaactttgcacaggtctcaaacgaggta-------------AGCGCTCTTT--G-GTA-TGAGCA---AC-TT----GA-ATCC----C---AT----T--GGT---CA---G---------TGGG-AG-c
gi|9 : tatag-------------AGTGTCCATT--G-GCC-TGAGCA---TC-TT----GA-ATCG----C---AA----T--GGT---CA---G---------TGAG-AG-GA-G-TCA-A----CGAA-CAA-A---A-----CTA---C-GCTtacctcattagaaacgtatgaaaagtttagccatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|4 : atttggggttttttttaacttcgttaaatacaatctatcaatatacatggaataaaggcatttccattatcacaagaaacttatttagatacgttgatcaacagcggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtGCGCTCATTTAGCGTCATGAGCC---AC-TTGTTAGA-ATCT----TCGAATGTGGT--GGGGGCCAGTGG---------AGGGCAGAGA-G-TCG-AATGGCAAA-CAA-ATAGA-----CAGAATC-CCTTTGAACT-GCT--G-TCATCGCCTAA-GCT------------GTGGAATA----------------GT---------------cttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
gi|3 : ctccctgctctacgctctccttgatatattcctgtttagccaatgattcataataattgaagaattccagttacctatattgtctttcttcaacttgacatagtccacaaccatgcactacgactcttagcacggccactgtttgttagctgagcacgaggtttctccccgatttaatagaccgtagaatcagaagccgcagagtatcgcttttaacgatattttcaacggagcactttatgatagctgtattgctgcattttattgttgaggaaaaccacaaaagttgactgccaaatgcaccctcgatgcaaggactctacttgttgtcatggtataaattcacgatcaagagccggccatatatcatatgggaatcactacgctgtagggcatcaacccccctaacaccttacacagcttctggtcaaactaataacatagccagttagtcattccttatatcaacttttgtacagtgcgcgactttgttgttgcatctgcatgtgatgagcgttttaattttctgtaagatggtctcttcaacataccatattaagatgtcagtagtaatttttaaaggctttttaacgtcatctgtgaaagatacaccatgttgatcaatcctacgctgttatactattccaaagaaccgcctgaactcaatCGCTTATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----G---AT----T--GGG---CA---G---------TGGG-AG-GA-G-TCA-A----CAA------------------------CCCTTGA--C-GGT--G-GCATCG-CCAA-cttactccgtgtccccgtgatccagttgacgagcatactgacgatttcagct
gi|20 : gattttaatcagttcttactaatctctctctgaaattaacattgcgagttatgggatgttatgtttagatgctgcctaccaatattatacgctttataattgatcttttttgcaatactctctctctctctctctctccttgatattagaatgtttgaataattcagtttacctatattgctttcttcacatgcaatttatcccatacatatagctagtatttacataagcacagtagcacagcactgtttgttactgagaacgagtttctcgatttaatagaacgtagaaccagagcgtattttaaaattcacggagacttatagcatatgctgcattttatgttgagaaaacaaaagtgatgtggccaatgcatctgatgcaggcactgttacatgtatgtaatattttcagatcctaaattgagtcggatatgtatatagcgaataagaagcgcattaaacgtcgctacacattagtcaccttgtaaattatagacaatacagctaactcatttttatttgtgatgatttgttgttgttgttttttaacatttggtatgcattcattaaaagatcattataataagttatatattcagagggtcatatttattatgatattgtagagatgatggtcacgctgatttttttaccttttctttccaccgactgctaaatctacttccttcacaatgggccagtcgcggtgttgaatactCGCTCATT--G-GTC-TGAGCA---ACTTT----GATATCTCTTAC---GT----T----G---CA--GACTCCGGTTTTTGG-AT-TACA-TCA-A----CAAC-AAA-A---A-----CCA---CGCCTTCGA--C-GCTCCG-TCATCagcgctcacctcgtttgagacgtatgaaaagcttggccgtgacagaactcgaaaagttacagcattttgcatttag
gi|6 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaaagagttgagcCTCATT--G-GT--------------TT----TA-ACCC----C---AT----T--GGT---CA-------------TG---AG-GA-G-TCA-A----CAAA-CAA-A---A-----a
gi|5 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccTCATT--G-GTC-TGAGCA---AC-TT----GA-ATCT----C---AT----T--GG----CA--GT---------TGG--AG-GA-G-TCA-A----CAAA-CAA-A---AA----CAA---C-CCTTTGA--T-GCT--GT-CATCG-CCAA-G-TTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GG-AG---TAAT----CTCA---G--GA--------GCAT-GCAT--GTATATGA-TTTT--T-A-AAAGTA-ATTTG--T--------ACATTT--ACA--GAAATACTTC-A-TCAAGGTCA-TAT---TAATTGTG-AATGA-ACTACAATCAA--CT-CTAAAAATAG-ATT---ATC-ATTGT-AGGATACTG-AT-ACTA--GCC-AGG---A------AAATTTTAATTTGG----------TCCACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATG----------TATATGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT---------TAGGA-TG---AAA-TTTAC-TTACAAATTAATAGATTTAGC-G---------------GATC----CT---GCGTA--CATC----TCC----ACCGCACAC-------------------CA-AG-CGC--GTATTTATACTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAAATGGC-----TTAATACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTAATGCCTCTCCTCTCTCTCTCTCTCTG------AAATTAA--CATGCGAATCGAGTTTACCTGAG---CGATGAT-GGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGCAA-TACTCTCT-gagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|14 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaactctccatagctcttcaaacaaagtaagtgCATT--G--TC-TGAGCA---AC-TT----GA-ATCC---------T----T--GG----CA-------------TGG--AG-G----TCA-A----TACA-AAA-A---A-----CG--------TTTGA--C-GCT----TCATCG-CTAA-G--------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AG-AT---TAAT----CTCG---G--GA--------GCAT-ACAT--GTATATGA-TTTT--TCA-AA-GTATATTTG--TAC------A--TTT--ACA--GAAA-ACTTtc
gi|18 : caaaactgttacttttaaatttactacagcttaactctcagtactctacaggagtacgg---------TGGG-AG-GA-G-TCA-A----CAAA-CAA-A---A-----CAA---C-CTTTCGA--C-GCT--AT-CATCG-CTAA-G-T------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AG-AT---TAAT----CTCG---G--GA--------GCAT-GCAT--GTATATGATTTTT--T-A-AA-GTATATTTG---------------------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CTAAAA-TAG-ATT
gi|16 : GGGGCTAGAAAGTCC-----GG-AG---TAAT----CTCG---G--ATTACGTCGAGCATCGCAT--GTATATAA-TTTT--A-A-AA-GTAT-ATTG--TAC------A--TTT--ATA--GAAACACTTC-A-TCAAGGTCA-TATG---AATTGTAGAATGA-ACTAGAATCAAACCT-CTAAAA-CAG-A----AATC-ATTG---------------------GCC-AGGAAAA--TTTT---T----ATTTACCTCA-CCCC-CTC-CCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TTat
gi|15 : gcgGGGGCTAGAAAGTCC-----GG-AG---TAAT----CTCG---G--ATTACGTCGAGCATCGCAT--GTATATAA-TTTT--A-A-AA-GTAT-ATTG--TAC------A--TTT--ATA--GAAACACTTC-A-TCAAGGTCA-TATG---AATTGTAGAATGA-ACTAGAATCAAACCT-CTAAAA-CAG-A----AATC-ATTG---------------------GCC-AGGAAAA--TTTT---T----ATTTACCTCA-CCCC-CTC-CCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TT
gi|6 : gcg----CTCGTTTG--A---------GCAT-CGAT--GTATGTAA-TTT-------AA-ATTTCTTTT--T--------T--TTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG---AATTGTG-AATCA-ACTA---------CT-GT-----TTGCATATTATT--ATTGT-AGGATA-CACATTACTA--GCTTAAG---A--CATT---TTCT--TTT-----A-TACC-CCC-C---T---------TT-CTC-AT-CT----------------------GCC-CTA--------------T----GTCATATGCGTAATTACAAAATGTG------TATTGTACAAAA-TATA-T-AACAT
gi|27 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggAT-TAATTGAG-AATGA-ACTAGAATCAA--CTCCCAAAA-TAG-ATGCGCAT--G-CGTT--TACA-TA-ATTATCATTG-T-AGG---A--TTT--------------AGTCGCCCCC-TCC-CCGCT---------TT-CTC-AT-CTAC----GAaactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|32 : TTTGGTCA-CCCCCTCC-CCGCT---------TT-CTC-AT-CAAC----GATT-AG---GCCACTGCC-TTACATGTACATGTATAT----GTCTTGTACGTAATTA
gi|39 : GTCA-CCCCCTCC-CCGCT---------AT-CTC-AT-CTAC----GATT-AG---GC
gi|6 : TATTTATAGTGGACATTGCAAACGGGTAAAGTTTATGTT-----TTGAGCAATTC--------ATAGA--AGACAAATC--AAAACAGCTGTT--CATC----TCC----ACCGCACA-AAACACCCAGACATACAGACA-AA-AACTCGTATTTATATTCATTCTAGATT--------AGGTATTT-AGCTTTCAAAA--TACTAAA-T--ACACGC--TCGT-ATTTAT-TAAATTGAGATT----ACTAATGCTTCC-----CC------CTCTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACAATG-------TGC---TGTTTAGA-TTCTGGT------TATTATACACTTTATAATCGTTC
gi|37 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgCGGATCCTGC-GTATTTATAGTAGACAgc
gi|22 : ataagatatatatatttgCATAGA--AGACAAATC--AAAAGAGCTGTTTACATCCCCTTCTC--CCCCGCACACAAACACGC----------------------GCATTTATATT----------------------TATTT-AGC-TTCAAAA--CGC---A-TTA----------TT-ACTTAC-TAACTGAAGATTT-TGATAAGTt
gi|13 : aatgctattgggaaaagtcgtttgaggaattCCCCACACACACACACAGACA------CA-CG-CGC--GTATTTGTATCCATTCT-GGGT----TAGT--TTATTT-AGCTTTCAAAA--TGCTT-A-T---TACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTAAT-CCCATAACCCCTATATAT---TG------A-AATAA--CAT-TG---TGATTTTGCCTGAG----AGCTATATGAA-GTACAT-TTTAGA-TTCTGCCTA
gi|38 : tgttatggggaattcacagacgacaaattataacatctgcccccT-ACTAGTAATTATTT-AGCTTTCAAAA--CGC-----TTAATACGCATt
gi|28 : TAGTTATTT-AGCTTTCAAAA--CTC-----TTAATACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTC---CTA---CTAATGCTCTCTCTCTCTCTCT
gi|3 : GATTT-TAATCAGTTCTTACTA---------ATCTCTCTCT------G------AAATTAA--CAT-TG---CGAGTT-------------ATG----GGATGT-TATGTTTAGA-TGCTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GC-AATACTCTCT-CTCT---CTCTCTCT---------CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATT-C-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATATA------------GCTAGTATTTACATAAGCA----CAGT-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACG-AGTTTCTC---GATTTAAT---AGAACGTAGAACCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATATG-CTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ATGTGGCCAATGCATCT--GATGCAGG-----CA-CT-GTT---------------------AC-AT-G-TATGT---AATATTTTC-AG--ATCCTAAATTGAGTCGG--ATAT-GTA-TAT--AGCGAA-----------TAAGAAGCGC---ATTAAA---CGTCGCT----ACA-CATTAGTCAC----CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT---AACATTT-GG-T---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTATATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCCACC--GACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA------------CTTTG-GCGATGCC--ACCG--TC-AAGG-G---TTG-----T-------------------T--G-A-CT-----CC-----TCCCA--CTG---CCC--A----AT---C----AGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----G-AG-ACGTA--TG-AA-AAGCTTctctc
gi|29 : TCTATCTG------AAATCAA--TAT-GG---CAATTTTACCCTAG---C---GAT-T--ATGT-TATGTCTAGA-TTCCGCCAATTAggccgtgacagaactcgaaaagttacagcattttgcatttag
gi|35 : tcgTCTCTG------AAATTAA--CAT-TG---CGATTGTGCCTGAG---CGATGAT----ATGC---TGCTTGGC-TTCTGCCTAT--------TACGCTTTAtgcttcagagtggtttgcagtatttt
gi|4 : aCTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATT-CCAGTT--ACCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT---------------GC--------AC-TACGA-----CTCTTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAG-AAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAAAACCACAAA-------AGTTG-AC-TGCCAAATGCACCCTCGATGCAAGGACTCTA-CTTGTT---------------------GTCAT-GGTATA----AA----TTCACG--ATC--AA---GAGCCGGCCATAT-ATCATAT--GG-GAATCACTACGCTGT---AGGGC----A-TCAA---C--C-CCCCTAACACC-TTA--CACAGCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT---AA-TTTTCTG-TAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT--AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCA-AAGAACCGCCTGAACTCAA----TACTATT-----------CC--------------ACAG-----------CT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTAT-TT-GTT-TGCC-A-TTCG-A-CTCTCTGCC-----CTCCA--CTGGCCCCC--ACCACATTCGA----AGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCG-TG-ATCCAGTTG-AC-GAGc
gi|1 : CTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTC-AGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT---------------GCC-------AC-TACGC-----CACT-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACG-AGTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGA----GC---GT-AT----TTT--TA-AAT----TCA-CGGAG-ACTT----ATAGC-CTATG-CTGCA-TTTTAT-GTTGAGAAAAA----CAAA-------A-T-G-ACGTGGCCAATGCACCT--GATGCAGA-----TACCT-GTT----------------------T-AT-G-TATA----AA----TTCAA---ATC--AA---GAGTCGG--ATTA-AT--TATCAGG-AAA-----------T---AGGCG----A-TAAATTTC--C-CT----ACA-C-TTA--CACAGTGTCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT---AA--TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAAT------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCCA-A--GACCGC---AA--CAATTT-TACTGTC-----------CC--------------ACA------------C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---T-TT-GTT-T--T-ATT--G-A-CT-----CC-----TCAT---CTG---CCCGTA----AT---G----A-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----G-AGAAGCTA--TGAAC-GAG-TTTAGCTcatactgacgatttcagct
gi|26 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATT-CCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CAT---------------tgactaagtttgaaaagttacagtaattgt
gi|7 : ATTAGAATTAATT-C-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT---------------GC--------AC-TACGA-----CACT-TACACGGC-ACTGTT--TTA-CTGA-------------------GCACG-AGTTTCTT---GATTTAAT---AGAACGTAGAATCAG-A----GC---GTTAT----TTTTAAA-AAT----TCA-CGG-G-ACTT----ATAGC-CTATG-CTGCAATTTTAT-GTTGAG-AAAA----CAAA-------AGT-GGACGTGGCCAATGCACCTT-GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AAA---TTCAAG--ATC--AA---GAATCG---ATATTAT--TAT--GG--AA-----------T---AGACG----A--AAA---C--C-CT----ACA-C-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT---AATTTTT-GG-TAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA-------TAA-AG--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCCA-C--AACCGCA--AA--CAA--T-TACTTTC-----------CC--------------ACAC-----------CT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---T-TT-GTT-C--A-T-T--G-ACCT-----CC-----TCCCA--CTT---GCC--A----AT---G----AGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----G-A--AGCTA--TG-AC-GAGTTTtatagctagtatttacatacagtagcaaggc
gi|19 : CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AATATCAGTTGATATAGAGCT-------AG-TACACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT----------------AG-A----GC---TT-GT----TTT--AA-ACC----TCA-ATGAG-AC-T----G-----ATTTG-CTGCA-TTTTTC-GTCAAG-AGAA----agatgtgataatttgaaaagtacagattttgcatc
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-A----GC---GC-GT----TTT--AA-AAC----TCA-TTGAG-ACTT-------GC-ATG---CTGTA-TTTTTC-GTCAAG-
gi|12 : gtg---GATTTA-T---AGAATGTCAAATCAG-A----AT---GT-GT----ATT--AT-AAC----TCA-TTGAC-ATT-------A---ATACG-CTGCA-TTTT-T-GTCAAG-AAAAA---CAAACAATAATAGT-A-ACGTGGCCAATGTGCCA--AATGCAGG-----TA-CT-CTTACAT-----------------GT-AT-G-TATATTTTAT----TTTTAGCAAAC--AA---GTGGAAG--AGAA-A----AC--TG-GAA-----------T---AAGCA----A-TAAA---C--C-CT----AAA-C--TA--AATA---CTTG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|33 : TT--AA-AAG----TCA-TGAAG-ACT-------A---ATATG-CTGCA-ATTTTC-GTTGAG-AAAAACA-CAAT-------AGT-G-ACGTGGCAAATGCCCCT--GATGag
gi|41 : T-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAA
gi|17 : -GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGAACC
gi|25 : TGCGACC--GATGCAGG-----TA-CT-GTTACATCATGGCATCATTGGCATGT-ATCG-TATA----GT----TTCAAG--ATC--AA---GA-------------T--TAT--GG-GAA-----------T---AGGCGACTTA-CAAA---C--C-CT----AAA-C-TTA--CAC-----CTG--TAAA-TA-A-----------AAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|17 : --TT-TGT--GATG-----------CGTTTGT--T--GTTGTTG--------------------TTTTTAAATTT---GG-GAA-AT-GGAGTCTC-TCA--ATATTA-TA-TA--A---------AGTAA-------
gi|9 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTT---------------------TTT---AACTT--CGT-TAA-AT-ACAATCTATC-A--ATAT-A-CA-TG--G---------AATAA-------A---GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GCtag
gi|5 : atttgggC-TCTTCCA-C--GACCGC---AA--CAA--T-TACTTTC-----------CC--------------ACAGTCGCGTTGAAACT-TG-GCGATGAC--AGCA--TCAAAGG-G---TTG-----T---T-TTTGTT-T--G-T-T--G-A-CT-----CC-----TCCAA--CTG---CC---A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GA-C-A-CTT-ACT-TTG-TTT----GAAG-AGCTA--TG-GA-GAG-TTTAGCTGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
gi|10 : aaatgcaaaatgctgtaactttcaaaattacgtcaC-TATTCCA-C--GACCGC---AA--CAA--T-TACTTTC-----------CC--------------ACA------------CT-TG-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---T-TT-GTT-T--G-T-T--G-A-CT-----CC-----TCCAA--CTG---CCC--A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TTG-TTT----G-AG-AGCTA--TG-AC-GAG-TTTAGCTGcggggctaagagtcggagtaatctcaggagcatgcatgtatatgatttttaaaagtaatttgtacatttacagaaatacttcatcaaggtcatattaattgtgaatgaactacaatcaactctaaaaatagattatcattgtaggatactgatactagccaggaaaattttaatttggtccaccgctttctcatctatgatttaggccactgcccttacatgtatatgtcttgtacgtaattataagatgttggtgtgtattgtacaaaaatatttataacatctctaagtaatacctattcattaggatgaaatttacttacaaattaatagatttagcggatcctgcgtacatctccaccgcacaccaagcgcgtatttatactcattctgatttactagtagttatttagctttcaaaaatggcttaatacgcattcttacttatacaacttgagattttaatcagttcttctaatgcctctcctctctctctctctctgaaattaacatgcgaatcgagtttacctgagcgatgatgggatgttatgtttagattactgcctactatattatgcgctttataattgatcttttgcaatactctcttc
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcaC-TATTCCA-C--GACCGC---AA--CAA--T-TACTTTC-----------CCC-------------ACA------------CT-TG-GCGATGAC--AGCG--TCAAAGG-G---TTC-----T---T-TT-GTT-T--G-C-T--G-A------------------CA--CTG---CCC--A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TTG-TTT----G-AG-AGCTA--TG-AC-GAG-TTTAGCTcggggctaagatcttagagtaatatcgggagcatgcatacacatatgattcttaaaagtatatttgtacatgtacatttacagaaacacttcatcaag
gi|14 : aatgcaaaatactgtaacttttcaaattacgtcagACCG-----A--CAA--T-TACTT-C-----------CA--------------AC-------------CT-TA-GCGATGA---AGCG--TCAAACG-----TT------T---T-TT-GTA-T--T------G-A-C-------C-----TCC-A---TG---CC---A----A---------GGAT-T----CAA-GT---TGCTCA-GA--C--AAT------GC---CGT-ACTCCTG-T--------AG-AG-TAC-TG-A--GAG-TTAAGCTGcggggctaagattttagtcagagtaatctcgggagcatgcatgtatatggtttttaaaagtatatttgtacattcacagaaacacttcatcaaggtca
gi|1 : caaaactgttacttttaaatttactaACTTTC-----------CC--------------A-A------------CT-TA-GCGATGAC--AGCGG-TCAAAG------TTG-----T---TGTT-GTT-TG-T-A-T--G-A-CT-----CC-----TCCC---CTG---CCC--A----AT---G----AGAT-T----CAA-ATA--TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----G-AG-AGCTA--TG-ACTGAGTAT--GCTGatgaagcgggctaagatcttagattaatctcgggagcatacatgtatatgatttttcaaagtatatttgtacatttacagaaaactt
gi|8 : atgcaaaaatacttacttttcaaattacgtcaACTTTC-----------CC--------------ACA------------CT-TA-GCGATGGC--AGCG--TCAAAGG-G----TG-----T---T-TT-GTT-T--T---T--G-A-CT-----CC-----TCCCA--C-G---TCC--A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----G-AG-AGCTA--TG-AC-GAG-TTTAGCTGggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|18 : atgcaaaatactgtaacttttcaaattaagtcaACTTTC-----------CC--------------ACA------------CT-TA-GCGATGAT--AGCG--TCGAAAG-G---TTG-----T---T-TT-GTT-T--G-T-T--G-A-CT-----CC-----TCCCA--ggaatagcggggctatgatctagattaatctcgggagcatgcatgtatatgatttttaaaagtatatttgtacatttacagaaaacttcaatcaaggtcactatattaattgtaatgaactaaaatcactctaaaatcattgtaggatactgattactagccaggagtttttttttaatttggtcaccccctccccgctttactccatctacgattaggccactgccttacttgtgtcttgtacgtaattatatgatgtcggtgtgtattgtacaaaatattaaacatct
gi|21 : ------------CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---T-TT-GTT-T--G-T-T--G-A-CT-----CC-----TCCCA--CTG---CCC--A----AT---G----AGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----G-AG-AGCTA--TG-AC-GAG-TTTAGCTGggaatagcggggctaagatcttagattaatctcgggagcatgcatgtatatgattttttaaagtatatttgaacttcatcaaggtcatatataaaattgtaaatggactaaaatcaactctaaaatagattat
gi|20 : tagatgcaaaatactgtaacttttcaaattacatcaATGACGGAGCG--TCGAAGGCG---TGG-----T---T-TTTGTTGT--TGA-T--GTA-AT-----CCAAAAACCGGAGTCTG---C----A----AC---GTAAGAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|24 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaaGAC--AGCG--TCGAAGC-G---CGG-----T---T-TC-GTG-T--G-T-T--G-A-CT-----CC-----TCCCA--ATG---ACC--A----AG---G----ATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----G-AG-ACCTG--TG--C-AAAGTTTAGCCGca
gi|9 : cattaGAC--A-CG--T---AGC-G---TAG-----T---T-TT-GTT-C--G-T-T--G-A-CT-----CC-----TCTCA--CTG---ACC--A----TT---G----CGAT-T----CAA-GA---TGCTCA-GGC-C--AAT----GGAC-A-CT
gi|6 : atttggggttttttttaacttcgttaaatacaatctatcaatatacatggaataaaggcatttccattatcacaagaaacttatttagatacgttgatcaacagcggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacga-----T---T-TT-GTT-T--G-T-T--G-A-CT-----CC-----T--CA---TG---ACC--A----AT---G----GGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----G-AG-GCCTG--TG-AA-CAGTcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
gi|23 : cattgcataatggtgtaacttgtcaagttattcacggcttC-----TCCCA--CTG---ACC--A----AT---G----GGAT-T----CAA-GT---TGCTCAT-AC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----G-AA-ACGTA--TG-AA-AAG-TTTAGCgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC
Alignments
lowQualScore : 3333333333333333 222222222222 999999999999999999999999999999999 11 11111 33333333 1111 1111111 111 11 22222222 222222 333333333 1 111 333333333333333 111 1 2222 3333333 1 11 2222222 111 1111111111 22222222 333333333 2222222 22222222 11111 44444444 444444444444 111111 111 2222222 11 111 333 1 222 1111 1 66666666666666666666666 1111111 1111 4444444444444444444 1 1111 1111 11111 22222222222 1111 1111111 111 11111 666666666666666666666 2222222222 111 11 111 222222222222222 1111 111 1111 22222 2222222222222222 11 2222222 22222222222 555555555555555555555 1 11111 222222222222 22222222222 222222222222222 55555555555555 111 11111111 1111 1111 11111 222 11 1111 5555555555555555555555555555 1 11 11111111111111111 11111 2222222222 111111 111
lowQualScore : 6 8888888888888888 0 5 7 4 1 4 4 4 1 1 4 4 555555555555 444444444444444444444444444444444 66 55 66666 1 00000000 7 88 7777 7 4444444 55 9 4 4 4 333 4 8 4 5 22 4 4 4 44444444 5 888 88 2 888 5 5 5 666666 8 999 2 222222222 4 2 8 8888 4 555 5 444444444444444 3 0 3 8 222 5 3 1111 22 3333333 0 33 3 0 0 9999999 2 1 1 111 6666666666 44444444 000000000 1111111 1 33333333 3 1 2 6 55555 0 0 5 66 00000000 0 5 88 0 5 0 3 3 444444444444 3 2 666666 77 5 000 1 0 0 5555555 22 5 1 333 2 7 7 000 0 888 2 5 1 7777 8 8 8 8 8 1 6 5 3 5 5 5 5 5 5 5 5 5 5 77 77777777777777777777777 8888888 2222 5 5 7 5 4444444444444444444 4 888 3 888 3 5 0000 888 5 0000 66 4 11111 4 4 33333333333 4 4 999 1 3 777 2222 4444444 4 4 3 555 44444 5 5 000000000000000000000 5 5 5 5 1111111111 1 77 777 0 77 77 33 000 5 888888888888888 7777 55 000 77 5 2222 5 5 77777 77 7777777777777777 99 6 88 6 1111111 77 5 77 77777777777 0 77 5 555555555555555555555 77 7 44 5 5 5 4 66666 5 5 555555555555 66666666666 6 99 444444444444444 9999 55555555555555 111 6 6 33333333 6 3 7777 9999 8 8 0 55555 222 11 9999 1 6666666666666666666666666666 3 6 6 11 66 99999999999999999 4 9999 4 4 11111 1 1111111111 222222 4 55 8888 777 4 8888 4 777 8 4 55 8888 4 4 4 111 4 1 9999 4 3 66 4 1 4
lowQualScore : . ................ . . . . . . . . . . . . ............ ................................. .. .. ..... . ........ . .. .... . ....... .. . . . . ... . . . . .. . . . ........ . ... .. . ... . . . ...... . ... . ......... . . . .... . ... . ............... . . . . ... . . .... .. ....... . .. . . . ....... . . . ... .......... ........ ......... ....... . ........ . . . . ..... . . . .. ........ . . .. . . . . . ............ . . ...... .. . ... . . . ....... .. . . ... . . . ... . ... . . . .... . . . . . . . . . . . . . . . . . . . .. ....................... ....... .... . . . . ................... . ... . ... . . .... ... . .... .. . ..... . . ........... . . ... . . ... .... ....... . . . ... ..... . . ..................... . . . . .......... . .. ... . .. .. .. ... . ............... .... .. ... .. . .... . . ..... .. ................ .. . .. . ....... .. . .. ........... . .. . ..................... .. . .. . . . . ..... . . ............ ........... . .. ............... .... .............. ... . . ........ . . .... .... . . . ..... ... .. .... . ............................ . . . .. .. ................. . .... . . ..... . .......... ...... . .. .... ... . .... . ... . . .. .... . . . ... . . .... . . .. . . .
lowQualScore : 7 3333333333333333 2 0 6 4 1 4 4 4 9 1 4 4 666666666666 111111111111111111111111111111111 99 00 66666 0 00000000 3 66 5555 3 8888888 00 6 0 0 4 333 4 9 4 4 22 4 4 4 11111111 0 888 22 5 444 0 0 0 666666 9 555 5 000000000 0 0 0 5555 4 666 0 333333333333333 2 8 8 0 222 0 2 2222 00 2222222 0 22 2 8 2 5555555 5 7 0 777 0000000000 22222222 555555555 7777777 5 55555555 7 7 5 7 77777 1 1 0 99 55555555 4 7 00 7 0 2 2 6 777777777777 0 5 444444 99 7 000 3 4 7 6666666 99 7 7 444 0 3 3 000 0 777 5 0 0 0000 0 0 0 0 0 0 7 0 2 7 7 7 7 7 7 7 7 0 7 99 33333333333333333333333 3333333 1111 7 0 1 7 3333333333333333333 1 888 2 888 1 0 6666 888 0 6666 11 4 11111 4 4 88888888888 4 4 111 6 6 000 5555 4444444 4 4 1 000 33333 7 7 777777777777777777777 7 7 7 7 6666666666 7 99 999 7 99 33 66 999 7 111111111111111 9999 99 000 99 7 1111 7 7 99999 99 7777777777777777 22 7 33 7 7777777 99 7 99 11111111111 1 99 7 000000000000000000000 99 3 44 7 7 7 3 11111 7 7 111111111111 66666666666 7 22 000000000000000 3333 22222222222222 777 7 7 77777777 7 8 0000 8888 0 0 8 00000 000 00 8888 0 0000000000000000000000000000 3 7 7 99 99 66666666666666666 4 4444 4 4 11111 6 5555555555 555555 0 55 5555 000 0 5555 0 000 0 0 55 5555 0 0 0 333 4 0 4444 4 9 11 4 1 4
consensus : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-AAAA-TAGAT---N---ATC-AT---TGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAACTACCTATTCATAG----CATTAAGAATG----AAA-TTTAC-TTTTAACGGATCCTG-CGTACATAGA---AGACAAATC--AAAACGG-CGTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAA-TACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAA---A----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TAT-A----AA----TTCAAGATC--AA---GAGTCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT--AA-TTTTCGG-TAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
Reference ( family-779 ) : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-AAAA-TAGAT---A---ATC-AT---TGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAACTACCTATTCATAG----CATTNNGA-CG----AAA-TTTAC-TTTTAACGGATCCTG-CGTACATANA---AGACAAATC--AAANCGGNCGTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATATTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATCGATCTTTTTTTGCAAATACTCTCT-CTCTACGCTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ANAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-GT----TTT--AA-AAC----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAA---A----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TAT-A----AA----TTCAAGATC--AA---GAGTCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACA--G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT--AACTTTTCGG-TAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-CGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TNT----GAG-AGCTA--TG-ACGAG-TTTAGCTG
gi|1 : CTCAGTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCATATTTGAATCTCATTGGGCAG--GGGAGGAGTCATACAAACAACAA-CAAC--TTTGACCGCTGT-CATCGCTAAGT-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----ATATTAATCTCGGT-------GAGCAT-GCATT-GTATATGATTTTATT-AAA-AGATATT-------GAACATTT-CA--AAAAC--TTCTA-GCAAGGTCA-TA-ATTAA-TTGTA-AATGACACTAAAATCAA--CT-CT-AAAA-TAGTT---ATTTATCCAT---T-T-AGGATACTGATTACTAAGC-CAGGAATTTTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTACCGTGGATT-AG---GCCACTGCC-TTACATG----------T----GTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAACTACCTATTCATAG----CATTTAGA-TG----AAA-TTTAC--TTTAGCGGATCCTGCCGTACA-ATA---AGACAAATTCAAAATCGGACGTTCA--------TCT--CTGA-TACCGC-CA-------CAAATACGCACGCACACAACGGCGTATTTATACTCGTT-T-GATTTAACTAGTAG-TATTTAAGCTTTCAAAA--CGCTT--AATTTAATACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA----CCAA-TAA
gi|1 : atgcaaaaatacttacttttcaaattacgtcacagcataCTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTCAGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT---------------GCCA----CTAC----GC-CAC----T-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACGA-GTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGA----GC---GT-AT----TTT--TA-AAT----TCA-CGGAG-ACTT----ATAGC-CTAT-GCTGCA-TTTTAT-GTTGAGAAAA---A----CAAA-------A-T-G-ACGTGGCCAATGCACCT--GATGCAGA-----TACCT-GTT----------------------T-AT-G-TAT-A----AA----TTCAA-ATC--AA---GAGTCGG--ATT-AAT--TATCAGG-AAA-----------T---AGGCG----A-TAAATTTC--C-CT----ACA-C-TTACACAGTG--TCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT--AA--TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCC--A-AGACCGC---AA--CAATTT-TACTGTC-----------CCA--------------CA-C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---TTTGTTTTA----TTGA-C-T-----CCT--CAT---------CTG---C--C-CGTA----AT---GA-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----GAGAAGCTA--TGAACGAG-TTTAGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|10 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TTGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGAGTAATATCGG--------GAGCAT-GCATACACATATGATTCT--TAAAA-GTATATTTGTACATGTACATTTACA--GAAACACTTC-A-TCAAGtgactaagtttgaaaagttacagtaattgt
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-T-------GTCA-GCAAACAA-AA-GAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAGAGTAATCTCGG--------GAGCAT-GCAT--GTATATGGTTTT--TAAAA-GTATATT------TGTACATTCACA--GAAACACTTC-A-TCAAGGTCA-
gi|12 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaa---GATTTA-T---AGAATGTCAAATCAG-A----AT---GT-GT----ATT--AT-AAC----TCA-TTGAC-A-TT----A-----ATAC-GCTGCA-TTTTT--GTCAAG-AAA---AA---CAAACAATAATAGT-A-ACGTGGCCAATGTGCCA--AATGCAGG-----TA-CT-CTTACAT-----------------GT-AT-G-TAT-ATTTTAT----TTTTAG--C--AAAC-AAGTGGA--AGA-GAA--AAC--TG-GAA-----------T---AAGCA----A-TAAA---C--C-CT----AAA-C--TAAATA--C--T-TG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|13 : CACAGA---CGACAAATT--ATAAC--------A--------TCTGCCC---CCCCCCACA-------CACACACACA-G-ACACACGCGCGTATTTGTATCCATTCT-GGGT----TAGT--TTATTT-AGCTTTCAAAA--TGC-------TTATTACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTAATC-CC-A-TAACCCCTATATAT---TG------AAA-T--AACAT-TG---TGATTTTGCCTGAGAGCTATAT-GAA-GTACAT-TTTAGATT-CTGCCTAag
gi|14 : tgttatggggaattTAACTCTC--AGTACTCTA-CAGGAGTACG-GC--ATTG-TCTGAGCA-ACTTGAATCC--TTGG-CA--TGG-AGG--TCA-ATACAAAA-AA-CG----TTTGAC-GCT-T-CATCGCTAAG-------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-ACAT--GTATATGATTTT--TCAAA-GTATATT------TGTACATTTACA--GAAA-ACTTt
gi|15 : caaaactgttacttttaaatttactacagctGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-AAAA-CAGA----A---ATC-AT---TG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TT
gi|16 : gcgGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-AAAA-CAGA----A---ATC-AT---TG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TT
gi|17 : gcg-GTTGAG-AAA---A----CAAA-------AGT-G-ACGTGGCCAATG
gi|17 : --TT-TGT--GATG-----------CGTTTGT--T--GTTGTTG--------------------TTTTTAAATTT--GG-GAA-AT-GGAGTCTCT-CA--ATATTA-TA-TA--A---------AGTAA----T------Aaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|18 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TGGGAGGAGTCA-ACAAACAA-AA-CAACCTTTCGAC-GCTAT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TTAAA-GTATATT------TG---------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CT-AAAA-TAGAT---T---ATg
gi|19 : -CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AATATCAGTTGATATAGAGCTA----GTAC----ACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT---AGA------------------GC---TT-GT----TTT--AA-ACC----TCA-ATGAG-ACTG----AT-----T-T-GCTGCA-TTTTTC-GTCAAG-AGA---A----
gi|2 : CTC-GTCATAGCT-----------------------AGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAGGTGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGTTCATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------G-GCAT-GCAT--GTATATGATTTT--T-AAA-GTATAAT------TGTA--TTTACA--GACA-ACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAAAATCAA--CT-CT-AAAA-TAGATTTTA---AT--AT---TGTTAGGATA-TGATTACTA-GC-CAGGA---TTTTTTTTAATTTG-GGTCATCCC-TCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTACAAAA-TATT-A-AACATCTCTAAGTAA-TACCTATTCATAG----CATTAAGAATG----AAAATTTAC-TTTTAACGGATCCTG-CGTACATATA---AGACAAATC--AACTCGGACGTTCA--------TCT--CTGGATACCGCACA-------CAAACACGCA-C-GCACAAAGGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-TTAA--TTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-AATAATCTCTCTCTCTCTCTG------ATATT--AACAT-TG---CGAGTTTACCTGAGCAATG-ATTGGATGT-TATGTTTAGATG-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCA--TACTCTCT-CTCT---CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTC-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GC-A----CTAC----GC-CAC----T-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----GTAGC-ATAT-TCTGCA-TTTTAT-GTTGAG-AAA---A----CAAA-------AGT-G-ACGTGGCCAATGCACCT--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TAT-A----AA----TTCAAGATC--AA---GAGCCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT--AATTTTTCGG-TAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-----------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-AGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTT----ATGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-AGCTA--TG-ACGAGTTTTAGCTG
gi|20 : GATGACGGAGCG--TCGAAGGCG---TGG-----T---TTTT-GTTG----TTGA-TGT-----AATCCAAAAACCGGAGTCTG---CAACGT--A----A----GAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|21 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaa-CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----GAG-AGCTA--TG-ACGAG-TTTAGCTGa
gi|22 : tagatgcaaaatactgtaacttttcaaattacatcaCATAGA---AGACAAATC--AAAAGAGCTGTTTACATCCCCTTCT--CC---C-CCGCACA-------CAAACA--------------CGCGCATTTATAT----------------------TTATTT-AGC-TTCAAAA--CGC----A--TTA----------TT-ACTTAC-TAACTGAAGATTT-TGATAAGT
gi|23 : aatgctattgggaaaagtcgtttgaggaattCTCCCA----------CTG---A--C-C--A----AT---GGGAT-T----CAA-GT---TGCTCA-TAC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----GAA-ACGTA--TG-AAAAG-TTTAGC
gi|24 : tatagGAC--AGCG--TCGAAGC-G---CGG-----T---TTCG-TGTG----TTGA-C-T-----CCTCCCA----------ATG---A--C-C--A----AG---GATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----GAG-ACCTG--TG-CAAAG-TTTAGCCGcatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|25 : cattaTGCGACC--GATGCAGG-----TA-CT-GTTACATCATGGCATCATTGGCATGT-ATCG-TAT-A----GT----TTCAAGATC--AA---GA-------------T--TAT--GG-GAA-----------T---AGGCGACTTA-CAAA---C--C-CT----AAA-C-TTACAC-------CTG--TAAA-TA-A-----------AA
gi|26 : GAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATTCCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATTATA-----------GCTAGTATTTAC----ATACAG----T-AGCAAGGC-
gi|27 : ATTAA-TTGAG-AATGA-ACTAGAATCAA--CT-CCCAAAA-TAGAT---G---CGC-ATGCGTTT-AC-ATAATTATCATTG----TAGGA---TTT----------A-G-TCGCCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA
gi|28 : TAGTTATTT-AGCTTTCAAAA--CTC-T------TAATACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTCCTACTA-------A-TGCTCTCTCTCTCTCTCT
gi|29 : TCTATCTG------AAATC--AATAT-GG---CAATTTTACCCTAGCGAT---T---ATGT-TATGTCTAGATT-CCGCCAATTActctc
gi|3 : tcgGATTT-TAATCAGTTCTTACTA-----------ATCTCTCTCT------G------AAATT--AACAT-TG---CGAGTT----------ATG----GGATGT-TATGTTTAGATG-CTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GCAA-TACTCTCT-CTCT-CTCTCTC-------T----CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATTC-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATATA------------GCTAGTATTTACATAAGCACAG----T-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACGA-GTTTCTC---GATTTAAT---AGAACGTAGAACCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTAT-GTTGAG-AAA---A----CAAA-------AGT-G-ATGTGGCCAATGCATCT--GATGCAGG-----CA-CT-GTT---------------------AC-AT-G-TAT-GT---AATATTTTC-AGATCCTAAATTGAGTCGG--ATA-TGTA-TAT--AGCGAA-----------TAAGAAGCGC---ATTAAA---CGTCGCT----ACA-CATTAGTCA--C--CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT--AACATTT-GG-T---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTA----TATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCC--ACCGACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA-CTTTG-GCGATGCC--ACCG--TCAAGGG-----------------------TTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---CAGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----GAG-ACGTA--TG-AAAAG-CTTGGCCGtgcttcagagtggtttgcagtatttt
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-A----GC---GC-GT----TTT--AA-AAC----TCA-TTGAG-ACTT-------GC---AT-GCTGTA-TTTTTC-GTCAAG-tgacagaactcgaaaagttacagcattttgcatttag
gi|32 : gtg-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CAAC----GATT-AG---GCCACTGCC-TTACATGTACATGTATAT----GTCTTGTACGTAATTA
gi|33 : TT--AA-AAG----TCA-TGAAG-ACT-------A---ATAT-GCTGCA-ATTTTC-GTTGAG-AAAAACA----CAAT-------AGT-G-ACGTGGCAAATGCCCCT--GATG
gi|35 : TCTCTG------AAATT--AACAT-TG---CGATTGTGCCTGAGCGATG-AT---ATGC---TGCTTGGCTT-CTGCCTAT--------TACGCTTTA
gi|38 : aT-ACTAGTAATTATTT-AGCTTTCAAAA--CGC-------TTAATACGCATc
gi|39 : -G-TCACCCCCTCCCCGCT---------AT-CTC-AT-CTAC----GATT-AG---GC
gi|4 : CTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATTCCAGTT-A-CCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT---------------GC-A----CTAC----G-ACTC----TTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAG-AAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAA---AACCACAAA-------AGTTG-AC-TGCCAAATGCACCCTCGATGCAAGGACTCTA-CTTGTT---------------------GTCAT-GGTAT-A----AA----TTCACGATC--AA---GAGCCGGCCATA-TATCATAT--GG-GAATCACTACGCTGT---AGGGC----A-TCAA---C--C-CCCCTAACACC-TTACACA--GCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT--AA-TTTTCTG-TAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT------AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCAAA-GAACCGCCTGAACTCAA----TACTATT-----------CCA--------------CAGCT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTATTTG-TTTGCCATTCGA-C-TCTCTGCCCTCCA----------CTGGCCC--C-C--ACCACATTCGAAGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCGTG-ATCCAGTTG-ACGAG-
gi|41 : -GTTGAG-AAA---A----CAAA-------AGT-G-ACGTGGCCAAcatactgacgatttcagct
gi|5 : tCTC-TCCATAGCTCTTCAA-------A-C-AAAGTAAGTG-TCATTGGTCTGAGCA-ACTTGAATCTCATTGG-CAG-TTGGAGGAGTCA-ACAAACAA-AAACAACCCTTTGAT-GCTGT-CATCGCCAAGTTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GGAGTAATCTCAG--------GAGCAT-GCAT--GTATATGATTTT--T-AAAAGTA-ATT------TGTACATTTACA--GAAATACTTC-A-TCAAGGTCA-TAT--TAA-TTGTG-AATGA-ACTACAATCAA--CT-CT-AAAAATAGAT---T---ATC-AT---TGT-AGGATACTGAT-ACTA-GC-CAGGA---AAATTTTAA-TTTG-G-TC-------CACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATG----------TATATGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT---------TAGGA-TG----AAA-TTTAC-TT---ACAAAT-------TA-ATAGATTTAG-CGGATC------CTG-CGTACA--------TCT--CC----ACCGCACA-------C---------------CAAGCGCGTATTTATACTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAAATGGC-------TTAATACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTAATGCCT-C-TCCTCTCTCTCTCTCTCTG------AAATT--AACATGCGAATCGAGTTTACCTGAGCGATG-ATGGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGC-AATACTCTCT-
gi|6 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaa-----T---TTTG-TTTG----TTGA-C-T-----CCT--CA-----------TG---A--C-C--A----AT---GGGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----GAG-GCCTG--TG-AACAG-TTAAGCCGtc
gi|6 : cattgcataatggtgtaacttgtcaagttattca--------GAGCAT-CGAT--GTATGTAATTT------AA-ATTTCTT------TTTTTTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG--AA-TTGTG-AATCA-ACTA---------CTGTT-TGCA-TA--T---T---ATT-AT---TGT-AGGATACACATTACTA-GCTTAAGACATTTTCTTTTA-T--------ACCCCC------CT---------TT-CTC-AT-----------------------CTGCC-CTA--------------T----GTCATATGCGTAATTACAAAA------TGTGTATTGTACAAAA-TATA-T-AACATgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|6 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttCTGCGTATTTATAGTGGACATTGCAAACGGGTAAAG-TTTATGTTTTGAGCAATTC--------ATAGA---AGACAAATC--AAAACAGCTGTTCA--------TCT---C---CACCGCACAAAACACCCAGACATACA-G-ACAAAAACTCGTATTTATATTCATTCTAGAT--------TAGGTATTT-AGCTTTCAAAA--TAC-T--A----AATACACGCTCGT-ATTTAT-TAAATTGAGATT----ACTAATGCTTCC------CC-------CTCTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACA-AT-G--TGC---TGTTTAGATT-CTGGT------TATTATACACTTTATAATCGTTCaactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|7 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcATTAGAATTAATTC-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT---------------GC-A----CTAC----G-ACAC----T-TACACGGC-ACTGTTT--TA-CTGA-------------------GCACGA-GTTTCTT---GATTTAAT---AGAACGTAGAATCAG-A----GC---GTTAT----TTTTAAA-AAT----TCA-CGG-G-ACTT----ATAGC-CTAT-GCTGCAATTTTAT-GTTGAG-AAA---A----CAAA-------AGT-GGACGTGGCCAATGCACCTT-GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATAA----AA----TTCAAGATC--AA---GAATC-G--ATATTAT--TAT---G-GAA-----------T---AGACG----A--AAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT--AA-TTTTTGG-TAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA----T------AAA--G--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCC--A-CAACCGCA--AA--CAA--T-TACTTTC-----------CCA--------------CACCT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---TTTG-TTCA----TTGACC-T-----CCTCCCA----------CTT---G--C-C--A----AT---GAGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----GA--AGCTA--TG-ACGAG-TTTAGATGgc
gi|8 : CTC-GTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGAC-G-TGGGAGGAGTCA-A-AAACAA-AA-CA-CCCTTTGAC-GCTGC-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAAAGTATATT------TGTACATTTACA--GAAA-ACTTC-AATCAAGGTCACTATATTAA-TTGTA-A-TGA-ACTAAAATCA---CT-CT-AAAA-T-------------C-AT---TGT-AGGATACTGATTACTA-GC-CAGGAGT-TTTTTTTTAATTTG-G-TCACCCCCTCCCCGCT---------TTACTCCAT-CTAC----GATT-AG---GCCACTGCC-TTACTTG----------T----GTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTACAAAA-TATT-A-AACATCTtgataatttgaaaagtacagattttgcatc
gi|9 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaGTTTTT---------------------TTT--AACTT--CGT-TAA-AT-ACAATCTAT-CA--ATAT-A-CA-T--------------GGAA----T------AAA-GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GC
gi|9 : atttgggAGTGTCCATTGGCCTGAGCA-TCTTGAATCGCAATGGTCAG-TGAGAGGAGTCA-ACGAACAA-AA-CTACGCT---AC-G-TGT-C-TCGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|37 ): ATAAGATATATATATTTGCGGATCCTGCGTATTTATAGTAGACAT
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC
Alignments
lowQualScore : 3333333333333333 222222222222 999999999999999999999999999999999 11 11111 33333333 2222 1111111 11 2222222222222 222222 333333333 1 111 4444444444 1 3333333333333333 1 11 1111111111 111 2222222 22222222 333333333 2222222 22222222 11111 44444444 444444444444 111111 111 2222222 11 22222 111 1 3333 1111 1 66666666666666666666666 1111111 1111 4444444444444444444 1 1111 1111 22222222222 1111 1111111 111 11111 666666666666666666666 2222222222 111 111 11 33333333333 1111 111 1111 1 2222 2222222222222222 11 2222222 22222222222 111 555555555555555555555 111 222222222222 22222222222 222222222222222 55555555555555 111 11111111 1111 1111 11 222 11 1111 5555555555555555555555555555 1 11 11111111111111111 11111 2222222222 111111 111
lowQualScore : 6 8888888888888888 0 5 7 4 1 4 4 4 1 1 4 4 555555555555 444444444444444444444444444444444 66 55 66666 1 00000000 7 88 1111 3 4444444 55 9 4 4 4 99 4 8 4 5 22 4 8 0000000000000 888 88 2 88888 5 5 666666 8 999 2 222222222 4 2 8 8888 4 555 5 3333333333 3 0 3 8 8 8 5 3 1111111111111111 0 33 3 0 3 6666666666 0 000 6 3333333 44444444 000000000 1111111 1 33333333 3 1 2 2 6 55555 0 0 5 66 00000000 0 5 88 0 5 0 3 3 444444444444 3 2 666666 77 5 000 1 0 0 5555555 22 5 00000 3 6 555 3 7 0 6666 2 5 1 7777 8 8 8 8 8 0 6 5 3 5 5 5 5 5 5 5 5 5 5 77 77777777777777777777777 8888888 2222 5 5 7 5 4444444444444444444 4 888 3 888 3 5 0000 888 5 0000 66 4 9999 4 4 33333333333 4 4 999 1 3 9999 4444444 4 4 3 555 44444 5 5 000000000000000000000 5 5 5 7777777777 1 77 777 000 77 33 77 5 77777777777 7777 55 000 77 5 2222 1 77 5555 77 7777777777777777 99 6 88 6 1111111 77 5 77 77777777777 0 222 5 555555555555555555555 000 5 88 5 5 4 99999 5 5 555555555555 66666666666 6 99 444444444444444 9999 55555555555555 111 6 6 33333333 6 3 7777 9999 8 8 0 11 99 222 11 9999 1 6666666666666666666666666666 3 6 6 11 66 99999999999999999 4 9999 4 4 11111 1 1111111111 222222 4 55 8888 777 4 8888 4 777 8 4 55 8888 4 4 4 111 4 1 9999 4 1 66 4 1 4
lowQualScore : . ................ . . . . . . . . . . . . ............ ................................. .. .. ..... . ........ . .. .... . ....... .. . . . . .. . . . . .. . . ............. ... .. . ..... . . ...... . ... . ......... . . . .... . ... . .......... . . . . . . . . ................ . .. . . . .......... . ... . ....... ........ ......... ....... . ........ . . . . . ..... . . . .. ........ . . .. . . . . . ............ . . ...... .. . ... . . . ....... .. . ..... . . ... . . . .... . . . .... . . . . . . . . . . . . . . . . . . . .. ....................... ....... .... . . . . ................... . ... . ... . . .... ... . .... .. . .... . . ........... . . ... . . .... ....... . . . ... ..... . . ..................... . . . .......... . .. ... ... .. .. .. . ........... .... .. ... .. . .... . .. .... .. ................ .. . .. . ....... .. . .. ........... . ... . ..................... ... . .. . . . ..... . . ............ ........... . .. ............... .... .............. ... . . ........ . . .... .... . . . .. .. ... .. .... . ............................ . . . .. .. ................. . .... . . ..... . .......... ...... . .. .... ... . .... . ... . . .. .... . . . ... . . .... . . .. . . .
lowQualScore : 7 3333333333333333 2 0 6 4 1 4 4 4 9 1 4 4 666666666666 111111111111111111111111111111111 99 00 66666 0 00000000 3 66 1111 6 8888888 00 6 0 0 4 22 4 9 4 4 22 4 9 4444444444444 888 22 5 55555 0 0 666666 9 555 5 000000000 0 0 0 5555 0 666 0 3333333333 2 8 8 0 0 0 0 2 5555555555555555 0 22 2 8 2 1111111111 1 000 7 7777777 22222222 555555555 7777777 5 55555555 7 7 2 5 7 77777 1 1 0 99 55555555 4 7 00 7 0 2 2 6 777777777777 0 5 444444 99 7 000 3 4 7 6666666 99 7 77777 2 0 222 2 0 0 7777 5 0 0 0000 0 0 0 0 0 6 7 0 2 7 7 7 7 7 7 7 7 0 7 99 33333333333333333333333 3333333 1111 7 0 1 7 3333333333333333333 1 888 2 888 1 0 6666 888 0 6666 11 4 4444 4 4 88888888888 4 4 111 6 6 5555 4444444 4 4 1 000 33333 7 7 777777777777777777777 7 7 7 3333333333 7 99 999 999 33 66 99 7 11111111111 9999 99 000 99 7 1111 4 99 0000 99 7777777777777777 22 7 33 7 7777777 99 7 99 11111111111 1 999 7 000000000000000000000 000 7 99 7 7 3 11111 7 7 111111111111 66666666666 7 22 000000000000000 3333 22222222222222 777 7 7 77777777 7 8 0000 8888 0 0 8 00 00 000 00 8888 0 0000000000000000000000000000 3 7 7 99 99 66666666666666666 4 4444 4 4 11111 6 5555555555 555555 0 55 5555 000 0 5555 0 000 0 0 55 5555 0 0 0 333 4 1 4444 4 0 11 4 1 4
consensus : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-AAAATAGATT---AT-----CAT---TGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
Reference ( family-779 ) : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-AAAATAGATN---AT-----CAT---TGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GAATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
gi|1 : CTCAGTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCATATTTGAATCTCATTGGGCAG--GGGAGGAGTCATACAAACAACAA-CAAC--TTTGACCGCTGT-CATCGCTAAGT-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----ATATTAATCTCGGT-------GAGCAT-GCATT-GTATATGATTTTATT-AAA-AGATATT-------GAACATTT-CA--AAAAC--TTCTA-GCAAGGTCA-TA-ATTAA-TTGTA-AATGACACTAAAATCAA--CT-CT-AAAATAG-TT---ATTTATCCAT---T-T-AGGATACTGATTACTAAGC-CAGGAATTTTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTACCGTGGA-TTAG---GCCACTG-CCTTACATG----------TGTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---TA-G-ATGAAA-TTTAC--TTTAGCGGATCCTGCCGTA--CA-ATA---AGACAAATTCAAAATCGGAC-GTTCA--------TCT--CTGA-TACCGC-CA-------CAAATACGCACGCACACAACGGCGTATTTATACTCGTT-T-GATTTAACTAGTAG-TATTTAAGCTTTCAAAA--CGCTT--AATTTAATACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA----CCAA-TAA
gi|1 : atgcaaaaatacttacttttcaaattacgtcacagcataCTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTCAGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT---------------GCCA----CTAC----GC-CAC----T-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACGA-GTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGA----GC---GT-AT----TTT--TA-AAT----TCA-CGGAG-ACTT----ATAGC-CTAT-GCTGCA-TTTTAT-GTTGAGAAAAA----CAAA-------A-T-G-ACGTGGCCAATGCACCT--GATGCAGA-----TACCT-GTT----------------------T-AT-G-TATA----AA----TTCAA-ATC--AA---GAGTCGG--ATTA-AT--TATCAGG-AAAT-----------AGGCG----A-TAAATTTC--C-CT----ACAC-TTA--CACAGTGTCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT---AA-TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCC--A-AGACCGC---AA--CAATTT-TACTGTC-----------CCA--------------CA-C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---TTTGTTTTA----TTGA-C-T-----CCT--CAT---------CTG---C--C-CGTA----AT---GA-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----GAGAAGCTA--TGAACGAG-TTTAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|10 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TTGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGAGTAATATCGG--------GAGCAT-GCATACACATATGATTCT--TAAAA-GTATATTTGTACATGTACATTTACA--GAAACACTTC-A-TCAAGttgactaagtttgaaaagttacagtaattgt
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-T-------GTCA-GCAAACAA-AA-GAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAGAGTAATCTCGG--------GAGCAT-GCAT--GTATATGGTTTT--TAAAA-GTATATT------TGTACATTCACA--GAAACACTTC-A-TCAAGGTCA-
gi|12 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaa---GATTTA-T---AGAATGTCAAATCAG-A----AT---GT-GT----ATT--AT-AAC----TCA-TTGAC-A-TT----A-----ATAC-GCTGCA-TTTTT--GTCAAG-AAAAA---CAAACAATAATAGT-A-ACGTGGCCAATGTGCCA--AATGCAGG-----TA-CT-CTTACAT-----------------GT-AT-G-TATATTTTAT----TTTTAG--C--AAAC-AAGTGGA--AGAG-AA--AAC--TG-GAAT-----------AAGCA----A-TAAA---C--C-CT----AAAC--TA--AATA---CTTG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|13 : --CACAGA---CGACAAA-TTATAA-C---------A--------TCTGCCC---CCCCCCACA-------CACACACACA-G-ACACACGCGCGTATTTGTATCCATTCT-GGGT----TAGT--TTATTT-AGCTTTCAAAA--TGC-------TTATTACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTAATC-CC-A-TAACCCCTATATAT---TG------AAA-T--AACAT-TG---TGATTTTGCCTGAGAGCTATAT-GAA-GTACAT-TTTAGATT-CTGCCTAag
gi|14 : tgttatggggaattTAACTCTC--AGTACTCTA-CAGGAGTACG-GC--ATTG-TCTGAGCA-ACTTGAATCC--TTGG-CA--TGG-AGG--TCA-ATACAAAA-AA-CG----TTTGAC-GCT-T-CATCGCTAAG-------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-ACAT--GTATATGATTTT--TCAAA-GTATATT------TGTACATTTACA--GAAA-ACTTt
gi|15 : caaaactgttacttttaaatttactacagctGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-AAAACAGA-A---AT-----CAT---TG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|16 : gcgGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-AAAACAGA-A---AT-----CAT---TG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|17 : gcg-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATG
gi|17 : --TT-TGT--GATG-----------CGTTTG---T-TGTTGTTG--------------------TTTTTAAA-TTT--GGGAA-AT-GGAGTCTC-TCA--ATATTA-TA-TA--A---------AGTAA----T------Aaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|18 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TGGGAGGAGTCA-ACAAACAA-AA-CAACCTTTCGAC-GCTAT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TTAAA-GTATATT------TG---------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CT-AAAATAGATT---AT-----g
gi|19 : -CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AATATCAGTTGATATAGAGCTA----GTAC----ACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT---AGA------------------GC---TT-GT----TTT--AA-ACC----TCA-ATGAG-ACTG----AT-----T-T-GCTGCA-TTTTTC-GTCAAG-AGAA----
gi|2 : CTC-GTCATAGCT-----------------------AGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAGGTGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGTTCATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------G-GCAT-GCAT--GTATATGATTTT--T-AAA-GTATAAT------TGTA--TTTACA--GACA-ACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAAAATCAA--CT-CT-AAAATAGATTTTAAT------AT---TGTTAGGATA-TGATTACTA-GC-CAGGA---TTTTTTTTAATTTG-GGTCATCCC-TCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAA-TACCTATTCATAG----CATT---AA-GAATGAAAATTTAC-TTTTAACGGATCCTG-CGTA--CATATA---AGACAAA-TCAACT-CGGAC-GTTCA--------TCT--CTGGATACCGCACA-------CAAACACGCA-C-GCACAAAGGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-TTAA--TTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-AATAATCTCTCTCTCTCTCTG------ATATT--AACAT-TG---CGAGTTTACCTGAGCAATG-ATTGGATGT-TATGTTTAGATG-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCA-TACTCTCT-CTCT-C--TCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTC-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GC-A----CTAC----GC-CAC----T-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----GTAGC-ATAT-TCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCACCT--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGCCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AATTTTTCGGTAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-----------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-AGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTT----ATGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-AGCTA--TG-ACGAGTTTTAGCTG
gi|20 : GATGACGGAGCG--TCGAAGGCG---TGG-----T---TTTT-GTTG----TTGA-TGT-----AATCCAAAAACCGGAGTCTG---CAACGT--A----A----GAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|21 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaa-CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----GAG-AGCTA--TG-ACGAG-TTTAGCTGa
gi|22 : tagatgcaaaatactgtaacttttcaaattacatca--CATAGA---AGACAAA-TCAAAA-GAG-CTGTTTACATCCCCTTCT--CC---C-CCGCACA-------CAAACA--------------CGCGCATTTATAT----------------------TTATTT-AGC-TTCAAAA--CGC----A--TTA----------TT-ACTTAC-TAACTGAAGATTT-TGATAAGT
gi|23 : aatgctattgggaaaagtcgtttgaggaattCTCCCA----------CTG---A--C-C--A----AT---GGGAT-T----CAA-GT---TGCTCA-TAC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----GAA-ACGTA--TG-AAAAG-TTTAGCC
gi|24 : tatagGAC--AGCG--TCGAAGC-G---CGG-----T---TTCG-TGTG----TTGA-C-T-----CCTCCCA----------ATG---A--C-C--A----AG---GATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----GAG-ACCTG--TG-CAAAG-TTTAGCCGatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|25 : cattaTGCGACC--GATGCAGG-----TA-CT-GTTACATCATGGCATCATTGGCATGT-ATCG-TATA----GT----TTCAAGATC--AA---GA-------------T--TAT--GG-GAAT-----------AGGCGACTTA-CAAA---C--C-CT----AAAC-TTA--CAC-----CTG--TAAA-TA-A-----------AA
gi|26 : GAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATTCCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATTATA-----------GCTAGTATTTAC----ATACAG----T-AGCAAGGC-
gi|27 : ATTAA-TTGAG-AATGA-ACTAGAATCAA--CT-CCCAAAATAGATG---CG-----CATGCGTTT-AC-ATAATTATCATTG----TAGGA---TTT----------A-G-TCGCCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-
gi|28 : TAGTTATTT-AGCTTTCAAAA--CTC-T------TAATACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTCCTACTA-------A-TGCTCTCTCTCTCTCTCT
gi|29 : TCTATCTG------AAATC--AATAT-GG---CAATTTTACCCTAGCGAT---T---ATGT-TATGTCTAGATT-CCGCC----AAT----TATGCTTCAGAGTGG-------TTTGCAGTATTTTctctc
gi|3 : tcgGATTT-TAATCAGTTCTTACTA-----------ATCTCTCTCT------G------AAATT--AACAT-TG---CGAGTT----------ATG----GGATGT-TATGTTTAGATG-CTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GCAATACTCTCT-CTCT-CTCTCTC-------T----CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATTC-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATATA------------GCTAGTATTTACATAAGCACAG----T-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACGA-GTTTCTC---GATTTAAT---AGAACGTAGAACCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ATGTGGCCAATGCATCT--GATGCAGG-----CA-CT-GTT---------------------AC-AT-G-TATGT---AATATTTTC-AGATCCTAAATTGAGTCGG--ATAT-GTA-TAT--AGCGAATAAG--------AAGCGC---ATTAAA---CGTCGCT----ACACATTAGTCAC----CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT---AA-CATTTGGT---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTA----TATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCC--ACCGACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA-CTTTG-GCGATGCC--ACCG--TCAAGGG-----------------------TTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---CAGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----GAG-ACGTA--TG-AAAAG-CTTGGCCG
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-A----GC---GC-GT----TTT--AA-AAC----TCA-TTGAG-ACTT-------GC---AT-GCTGTA-TTTTTC-GTCAAG-tgacagaactcgaaaagttacagcattttgcatttag
gi|32 : gtg-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CAAC----GA-TTAG---GCCACTG-CCTTACATGTACATGTATATGTCTTGTACGTAATTA
gi|33 : TT--AA-AAG----TCA-TGAAG-ACT-------A---ATAT-GCTGCA-ATTTTC-GTTGAG-AAAAACA-CAAT-------AGT-G-ACGTGGCAAATGCCCCT--GATG
gi|35 : TCTCTG------AAATT--AACAT-TG---CGATTGTGCCTGAGCGATG-AT---ATGC---TGCTTGGCTT-CTGCCTAT--------TACGCTTTA
gi|37 : aCGGATCCTG-CGTATTTATAGT---AGACAc
gi|38 : ataagatatatatatttgT-ACTAGTAATTATTT-AGCTTTCAAAA--CGC-------TTAATACGCATt
gi|39 : -G-TCACCCCCTCCCCGCT---------AT-CTC-AT-CTAC----GA-TTAG---GC
gi|4 : CTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATTCCAGTT-A-CCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT---------------GC-A----CTAC----G-ACTC----TTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAG-AAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAAAACCACAAA-------AGTTG-AC-TGCCAAATGCACCCTCGATGCAAGGACTCTA-CTTGTT---------------------GTCAT-GGTATA----AA----TTCACGATC--AA---GAGCCGGCCATAT-ATCATAT--GG-GAATCACTACGCTGTAGGGC----A-TCAA---C--C-CCCCTAACACCTTA--CACAGCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT---AA-TTTTCTGTAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT------AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCAAA-GAACCGCCTGAACTCAA----TACTATT-----------CCA--------------CAGCT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTATTTG-TTTGCCATTCGA-C-TCTCTGCCCTCCA----------CTGGCCC--C-C--ACCACATTCGAAGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCGTG-ATCCAGTTG-ACGAG-
gi|41 : -GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAAcatactgacgatttcagct
gi|5 : tCTC-TCCATAGCTCTTCAA-------A-C-AAAGTAAGTG-TCATTGGTCTGAGCA-ACTTGAATCTCATTGG-CAG-TTGGAGGAGTCA-ACAAACAA-AAACAACCCTTTGAT-GCTGT-CATCGCCAAGTTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GGAGTAATCTCAG--------GAGCAT-GCAT--GTATATGATTTT--TAAAA-GTA-ATT------TGTACATTTACA--GAAATACTTC-A-TCAAGGTC---ATATTAA-TTGTG-AATGA-ACTACAATCAA--CT-CTAAAAATAGATT---AT-----CAT---TGT-AGGATACTGA-TACTA-GC-CAGGA---AAATTTTAA-TTTG-G-TC-------CACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATGTATA------TGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT--------T-----A-GGATGAAA-TTTAC-TT---ACAAAT-------TA---ATAGATTTAG-CGGA-TC-----CTG-C-GTACA--------TCT---C---CACCGCACA-------C---------------CAAGCGCGTATTTATACTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAAATGGC-------TTAATACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTAATGCCT-C-TCCTCTCTCTCTCTCTCTG------AAATT--AACATGCGAATCGAGTTTACCTGAGCGATG-ATGGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGCAATACTCTCT-
gi|6 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaa-----T---TTTG-TTTG----TTGA-C-T-----CCT--CA-----------TG---A--C-C--A----AT---GGGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----GAG-GCCTG--TG-AACAG-TTAAGCCGtc
gi|6 : cattgcataatggtgtaacttgtcaagttattca--------GAGCAT-CGAT--GTATGTAATTT------AA-ATTTCTT------TTTTTTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG--AA-TTGTG-AATCA-ACTA---------CTGTT-TGCATA--TT---AT-----TAT---TGT-AGGATACACATTACTA-GCTTAAGACATTTTCTTTTA-T--------ACCCCC------CT---------TT-CTC-AT-----------------------CTG-CCCTA--------------TGTCATATGCGTAATTACAAAA------TGTGTATTGTAC-AAAATA-TAT-AACATgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|6 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttCTGCGTATTTATAGTGGACATTGCAAACGGGTAAAG-TTTATGTTTTGAGCAATTC----------ATAGA---AGACAAA-TCAAAA-CAG-CTGTTCA--------TCT--CC----ACCGCACAAAACACCCAGACATACA-G-ACAAAAACTCGTATTTATATTCATTCTAGAT--------TAGGTATTT-AGCTTTCAAAA--TAC-T--A----AATACACGCTCGT-ATTTAT-TAAATTGAGATT----ACTAATGCTTCC------CC-------CTCTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACA-AT-G--TGC---TGTTTAGATT-CTGGT------TATTATACACTTTATAATCGTTCaactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|7 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcATTAGAATTAATTC-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT---------------GC-A----CTAC----G-ACAC----T-TACACGGC-ACTGTTT--TA-CTGA-------------------GCACGA-GTTTCTT---GATTTAAT---AGAACGTAGAATCAG-A----GC---GTTAT----TTTTAAA-AAT----TCA-CGG-G-ACTT----ATAGC-CTAT-GCTGCAATTTTAT-GTTGAG-AAAA----CAAA-------AGT-GGACGTGGCCAATGCACCTT-GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AAA---TTCAAGATC--AA---GAATCG---ATATTAT--TAT--GG--AAT-----------AGACG----A--AAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT---AA-TTTTTGGTAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA----T------AAA--G--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCC--A-CAACCGCA--AA--CAA--T-TACTTTC-----------CCA--------------CACCT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---TTTG-TTCA----TTGACC-T-----CCTCCCA----------CTT---G--C-C--A----AT---GAGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----GA--AGCTA--TG-ACGAG-TTTAGgc
gi|8 : CTC-GTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGAC-G-TGGGAGGAGTCA-A-AAACAA-AA-CA-CCCTTTGAC-GCTGC-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAAAGTATATT------TGTACATTTACA--GAAA-ACTTC-AATCAAGGTCACTATATTAA-TTGTA-A-TGA-ACTAAAATCA---CT-CT-AAAAT---------------CAT---TGT-AGGATACTGATTACTA-GC-CAGGAGT-TTTTTTTTAATTTG-G-TCACCCCCTCCCCGCT---------TTACTCCAT-CTAC----GA-TTAG---GCCACTG-CCTTACTTG----------TGTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTAC-AAAATA-TTA-AACATCTatgtgataatttgaaaagtacagattttgcatc
gi|9 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaGTTTTT---------------------TTT---AA-CTT-CGTTAA-AT-ACAATCTAT-CA--ATAT-A-CA-T--------------GGAA----T------AAA-GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GC
gi|9 : atttgggAGTGTCCATTGGCCTGAGCA-TCTTGAATCGCAATGGTCAG-TGAGAGGAGTCA-ACGAACAA-AA-CTACGCT---AC-G-TGT-C-TCGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC
Alignments
lowQualScore : 3333333333333333 222222222222 999999999999999999999999999999999 11 11111 33333333 2222 1111111 11 222222222222222 111 222222 333333333 1 111 4444444444 1 33333333333333 1 111 1111111 111 2222222 22222222 333333333 2222222 22222222 11111 44444444 444444444444 111111 111 2222222 11 22222 111 1 3333 1111 1 66666666666666666666666 1111111 1111 4444444444444444444 1 1111 1111 22222222222 1111 1111111 111 11111 666666666666666666666 2222222222 111 111 11 33333333333 1111 111 1111 1 2222 2222222222222222 11 2222222 22222222222 111 555555555555555555555 111 222222222222 22222222222 222222222222222 55555555555555 111 11111111 1111 1111 11 222 11 1111 5555555555555555555555555555 1 11 11111111111111111 11111 2222222222 111111 111
lowQualScore : 6 8888888888888888 0 5 7 4 1 4 4 4 1 1 4 4 555555555555 444444444444444444444444444444444 66 55 66666 1 00000000 7 88 1111 3 4444444 55 9 4 4 4 99 4 8 4 22 4 99999 1 444444444444444 000 2 88888 5 5 666666 8 999 2 222222222 4 2 8 8888 4 555 5 3333333333 3 0 3 8 8 8 0 0 3 0 99999999999999 8 6 88 444 6666666 888 0 000 6 3333333 44444444 000000000 1111111 1 33333333 3 1 2 2 6 55555 0 0 5 66 00000000 0 5 88 0 5 0 3 3 444444444444 3 2 666666 77 5 000 1 0 0 5555555 22 5 00000 3 6 555 3 7 0 6666 2 5 1 7777 8 8 8 8 8 0 6 5 3 5 5 5 5 5 5 5 5 5 5 77 77777777777777777777777 8888888 2222 5 5 7 5 4444444444444444444 4 888 3 888 3 5 0000 888 5 0000 66 4 9999 4 4 33333333333 4 4 999 1 3 9999 4444444 4 4 3 555 44444 5 5 000000000000000000000 5 5 5 7777777777 1 77 777 000 77 33 77 5 77777777777 7777 55 000 77 5 2222 1 77 5555 77 7777777777777777 99 6 88 6 1111111 77 5 77 77777777777 0 222 5 555555555555555555555 000 5 88 5 5 4 99999 5 5 555555555555 66666666666 6 99 444444444444444 9999 55555555555555 111 6 6 33333333 6 3 7777 9999 8 8 0 11 99 222 11 9999 1 6666666666666666666666666666 3 6 6 11 66 99999999999999999 4 9999 4 4 11111 1 1111111111 222222 4 55 8888 777 4 8888 4 777 8 4 55 8888 4 4 4 111 4 1 9999 4 1 66 4 1 4
lowQualScore : . ................ . . . . . . . . . . . . ............ ................................. .. .. ..... . ........ . .. .... . ....... .. . . . . .. . . . .. . ..... . ............... ... . ..... . . ...... . ... . ......... . . . .... . ... . .......... . . . . . . . . . . .............. . . .. ... ....... ... . ... . ....... ........ ......... ....... . ........ . . . . . ..... . . . .. ........ . . .. . . . . . ............ . . ...... .. . ... . . . ....... .. . ..... . . ... . . . .... . . . .... . . . . . . . . . . . . . . . . . . . .. ....................... ....... .... . . . . ................... . ... . ... . . .... ... . .... .. . .... . . ........... . . ... . . .... ....... . . . ... ..... . . ..................... . . . .......... . .. ... ... .. .. .. . ........... .... .. ... .. . .... . .. .... .. ................ .. . .. . ....... .. . .. ........... . ... . ..................... ... . .. . . . ..... . . ............ ........... . .. ............... .... .............. ... . . ........ . . .... .... . . . .. .. ... .. .... . ............................ . . . .. .. ................. . .... . . ..... . .......... ...... . .. .... ... . .... . ... . . .. .... . . . ... . . .... . . .. . . .
lowQualScore : 7 3333333333333333 2 0 6 4 1 4 4 4 9 1 4 4 666666666666 111111111111111111111111111111111 99 00 66666 0 00000000 3 66 1111 6 8888888 00 6 0 0 4 22 4 9 4 22 4 33333 9 111111111111111 888 5 55555 0 0 666666 9 555 5 000000000 0 0 0 5555 0 666 0 3333333333 2 8 8 0 0 0 8 0 8 8 44444444444444 0 0 88 888 7777777 222 1 000 7 7777777 22222222 555555555 7777777 5 55555555 7 7 2 5 7 77777 1 1 0 99 55555555 4 7 00 7 0 2 2 6 777777777777 0 5 444444 99 7 000 3 4 7 6666666 99 7 77777 2 0 222 2 0 0 7777 5 0 0 0000 0 0 0 0 0 6 7 0 2 7 7 7 7 7 7 7 7 0 7 99 33333333333333333333333 3333333 1111 7 0 1 7 3333333333333333333 1 888 2 888 1 0 6666 888 0 6666 11 4 4444 4 4 88888888888 4 4 111 6 6 5555 4444444 4 4 1 000 33333 7 7 777777777777777777777 7 7 7 3333333333 7 99 999 999 33 66 99 7 11111111111 9999 99 000 99 7 1111 4 99 0000 99 7777777777777777 22 7 33 7 7777777 99 7 99 11111111111 1 999 7 000000000000000000000 000 7 99 7 7 3 11111 7 7 111111111111 66666666666 7 22 000000000000000 3333 22222222222222 777 7 7 77777777 7 8 0000 8888 0 0 8 00 00 000 00 8888 0 0000000000000000000000000000 3 7 7 99 99 66666666666666666 4 4444 4 4 11111 6 5555555555 555555 0 55 5555 000 0 5555 0 000 0 0 55 5555 0 0 0 333 4 1 4444 4 0 11 4 1 4
consensus : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
Reference ( family-779 ) : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
gi|1 : CTCAGTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCATATTTGAATCTCATTGGGCAG--GGGAGGAGTCATACAAACAACAA-CAAC--TTTGACCGCTGT-CATCGCTAAGT-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----ATATTAATCTCGGT-------GAGCAT-GCATT-GTATATGATTTTATT-AAA-AGATATT-------GAACATTT-CA--AAAAC--TTCTA-GCAAGGTCA-TA-ATTAA-TTGTA-AATGACACTAAAATCAA--CT-CT-A---AAATAG-T---T---ATTTATCCATT-T-AGGATACTGATTACTAAGC-CAGGAATTTTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTACCGTGGA-TTAG---GCCACTG-CCTTACATG----------TGTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---TA--GATGAAA-TTTAC--TTTAGCGGATCCTGCCGTA--CA-ATA---AGACAAATTCAAAATCGGAC-GTTCA--------TCT--CTGA-TACCGC-CA-------CAAATACGCACGCACACAACGGCGTATTTATACTCGTT-T-GATTTAACTAGTAG-TATTTAAGCTTTCAAAA--CGCTT--AATTTAATACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA----CCAA-TAA
gi|1 : atgcaaaaatacttacttttcaaattacgtcacagcataCTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTCAGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT---------------GCCA----CTAC----GC-CAC----T-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACGA-GTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGA----GC---GT-AT----TTT--TA-AAT----TCA-CGGAG-ACTT----ATAGC-CTAT-GCTGCA-TTTTAT-GTTGAGAAAAA----CAAA-------A-T-G-ACGTGGCCAATGCACCT--GATGCAGA-----TACCT-GTT----------------------T-AT-G-TATA----AA----TTCAA-ATC--AA---GAGTCGG--ATTA-AT--TATCAGG-AAAT-----------AGGCG----A-TAAATTTC--C-CT----ACAC-TTA--CACAGTGTCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT---AA-TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCC--A-AGACCGC---AA--CAATTT-TACTGTC-----------CCA--------------CA-C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---TTTGTTTTA----TTGA-C-T-----CCT--CAT---------CTG---C--C-CGTA----AT---GA-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----GAGAAGCTA--TGAACGAG-TTTAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|10 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TTGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGAGTAATATCGG--------GAGCAT-GCATACACATATGATTCT--TAAAA-GTATATTTGTACATGTACATTTACA--GAAACACTTC-A-TCAAGttgactaagtttgaaaagttacagtaattgt
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-T-------GTCA-GCAAACAA-AA-GAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAGAGTAATCTCGG--------GAGCAT-GCAT--GTATATGGTTTT--TAAAA-GTATATT------TGTACATTCACA--GAAACACTTC-A-TCAAGGTCA-
gi|12 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaa---GATTTA-T---AGAATGTCAAATCAG-A----AT---GT-GT----ATT--AT-AAC----TCA-TTGAC-A-TT----A-----ATAC-GCTGCA-TTTTT--GTCAAG-AAAAA---CAAACAATAATAGT-A-ACGTGGCCAATGTGCCA--AATGCAGG-----TA-CT-CTTACAT-----------------GT-AT-G-TATATTTTAT----TTTTAG--C--AAAC-AAGTGGA--AGAG-AA--AAC--TG-GAAT-----------AAGCA----A-TAAA---C--C-CT----AAAC--TA--AATA---CTTG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|13 : --CACAGA---CGACAAA-TTATAA-C---------A--------TCTGCCC---CCCCCCACA-------CACACACACA-G-ACACACGCGCGTATTTGTATCCATTCT-GGGT----TAGT--TTATTT-AGCTTTCAAAA--TGC-------TTATTACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTAATC-CC-A-TAACCCCTATATAT---TG------AAA-T--AACAT-TG---TGATTTTGCCTGAGAGCTATAT-GAA-GTACAT-TTTAGATT-CTGCCTAag
gi|14 : tgttatggggaattTAACTCTC--AGTACTCTA-CAGGAGTACG-GC--ATTG-TCTGAGCA-ACTTGAATCC--TTGG-CA--TGG-AGG--TCA-ATACAAAA-AA-CG----TTTGAC-GCT-T-CATCGCTAAG-------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-ACAT--GTATATGATTTT--TCAAA-GTATATT------TGTACATTTACA--GAAA-ACTTt
gi|15 : caaaactgttacttttaaatttactacagctGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAACAGA----A---AT-----CATTG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|16 : gcgGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAACAGA----A---AT-----CATTG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|17 : gcg-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATG
gi|17 : --TT-TGT--GATG-----------CGTTTG---T-TGTTGTTG--------------------TTTTTAAA-TTT--GGGAA-AT-GGAGTCTC-TCA--ATATTA-TA-TA--A---------AGTAA----T------Aaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|18 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TGGGAGGAGTCA-ACAAACAA-AA-CAACCTTTCGAC-GCTAT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TTAAA-GTATATT------TG---------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CT-A---AAATAGAT---T---AT-----g
gi|19 : -CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AATATCAGTTGATATAGAGCTA----GTAC----ACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT---AGA------------------GC---TT-GT----TTT--AA-ACC----TCA-ATGAG-ACTG----AT-----T-T-GCTGCA-TTTTTC-GTCAAG-AGAA----
gi|2 : CTC-GTCATAGCT-----------------------AGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAGGTGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGTTCATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------G-GCAT-GCAT--GTATATGATTTT--T-AAA-GTATAAT------TGTA--TTTACA--GACA-ACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAAAATCAA--CT-CT-A---AAATAGAT---TTTAAT------ATTGTTAGGATA-TGATTACTA-GC-CAGGA---TTTTTTTTAATTTG-GGTCATCCC-TCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAA-TACCTATTCATAG----CATT---AA-GAATGAAAATTTAC-TTTTAACGGATCCTG-CGTA--CATATA---AGACAAA-TCAACT-CGGAC-GTTCA--------TCT--CTGGATACCGCACA-------CAAACACGCA-C-GCACAAAGGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-TTAA--TTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-AATAATCTCTCTCTCTCTCTG------ATATT--AACAT-TG---CGAGTTTACCTGAGCAATG-ATTGGATGT-TATGTTTAGATG-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCA-TACTCTCT-CTCT-C--TCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTC-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GC-A----CTAC----GC-CAC----T-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----GTAGC-ATAT-TCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCACCT--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGCCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AATTTTTCGGTAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-----------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-AGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTT----ATGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-AGCTA--TG-ACGAGTTTTAGCTG
gi|20 : GATGACGGAGCG--TCGAAGGCG---TGG-----T---TTTT-GTTG----TTGA-TGT-----AATCCAAAAACCGGAGTCTG---CAACGT--A----A----GAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|21 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaa-CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----GAG-AGCTA--TG-ACGAG-TTTAGCTGa
gi|22 : tagatgcaaaatactgtaacttttcaaattacatca--CATAGA---AGACAAA-TCAAAA-GAG-CTGTTTACATCCCCTTCT--CC---C-CCGCACA-------CAAACA--------------CGCGCATTTATAT----------------------TTATTT-AGC-TTCAAAA--CGC----A--TTA----------TT-ACTTAC-TAACTGAAGATTT-TGATAAGT
gi|23 : aatgctattgggaaaagtcgtttgaggaattCTCCCA----------CTG---A--C-C--A----AT---GGGAT-T----CAA-GT---TGCTCA-TAC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----GAA-ACGTA--TG-AAAAG-TTTAGCC
gi|24 : tatagGAC--AGCG--TCGAAGC-G---CGG-----T---TTCG-TGTG----TTGA-C-T-----CCTCCCA----------ATG---A--C-C--A----AG---GATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----GAG-ACCTG--TG-CAAAG-TTTAGCCGatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|25 : cattaTGCGACC--GATGCAGG-----TA-CT-GTTACATCATGGCATCATTGGCATGT-ATCG-TATA----GT----TTCAAGATC--AA---GA-------------T--TAT--GG-GAAT-----------AGGCGACTTA-CAAA---C--C-CT----AAAC-TTA--CAC-----CTG--TAAA-TA-A-----------AA
gi|26 : GAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATTCCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATTATA-----------GCTAGTATTTAC----ATACAG----T-AGCAAGGC-
gi|27 : ATTAA-TTGAG-AATGA-ACTAGAATCAA--CT-CCCA---AAATAGATGCGC---ATG----CGTT-T-AC-ATAATTATCATTG----TAGGA---TTT----------A-G-TCGCCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-
gi|28 : TAGTTATTT-AGCTTTCAAAA--CTC-T------TAATACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTCCTACTA-------A-TGCTCTCTCTCTCTCTCT
gi|29 : TCTATCTG------AAATC--AATAT-GG---CAATTTTACCCTAGCGAT---T---ATGT-TATGTCTAGATT-CCGCC----AAT----TATGCTTCAGAGTGG-------TTTGCAGTATTTTctctc
gi|3 : tcgGATTT-TAATCAGTTCTTACTA-----------ATCTCTCTCT------G------AAATT--AACAT-TG---CGAGTT----------ATG----GGATGT-TATGTTTAGATG-CTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GCAATACTCTCT-CTCT-CTCTCTC-------T----CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATTC-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATATA------------GCTAGTATTTACATAAGCACAG----T-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACGA-GTTTCTC---GATTTAAT---AGAACGTAGAACCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ATGTGGCCAATGCATCT--GATGCAGG-----CA-CT-GTT---------------------AC-AT-G-TATGT---AATATTTTC-AGATCCTAAATTGAGTCGG--ATAT-GTA-TAT--AGCGAATAAG--------AAGCGC---ATTAAA---CGTCGCT----ACACATTAGTCAC----CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT---AA-CATTTGGT---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTA----TATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCC--ACCGACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA-CTTTG-GCGATGCC--ACCG--TCAAGGG-----------------------TTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---CAGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----GAG-ACGTA--TG-AAAAG-CTTGGCCG
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-A----GC---GC-GT----TTT--AA-AAC----TCA-TTGAG-ACTT-------GC---AT-GCTGTA-TTTTTC-GTCAAG-tgacagaactcgaaaagttacagcattttgcatttag
gi|32 : gtg-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CAAC----GA-TTAG---GCCACTG-CCTTACATGTACATGTATATGTCTTGTACGTAATTA
gi|33 : TT--AA-AAG----TCA-TGAAG-ACT-------A---ATAT-GCTGCA-ATTTTC-GTTGAG-AAAAACA-CAAT-------AGT-G-ACGTGGCAAATGCCCCT--GATG
gi|35 : TCTCTG------AAATT--AACAT-TG---CGATTGTGCCTGAGCGATG-AT---ATGC---TGCTTGGCTT-CTGCCTAT--------TACGCTTTA
gi|37 : aCGGATCCTG-CGTATTTATAGT---AGACAc
gi|38 : ataagatatatatatttgT-ACTAGTAATTATTT-AGCTTTCAAAA--CGC-------TTAATACGCATt
gi|39 : -G-TCACCCCCTCCCCGCT---------AT-CTC-AT-CTAC----GA-TTAG---GC
gi|4 : CTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATTCCAGTT-A-CCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT---------------GC-A----CTAC----G-ACTC----TTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAG-AAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAAAACCACAAA-------AGTTG-AC-TGCCAAATGCACCCTCGATGCAAGGACTCTA-CTTGTT---------------------GTCAT-GGTATA----AA----TTCACGATC--AA---GAGCCGGCCATAT-ATCATAT--GG-GAATCACTACGCTGTAGGGC----A-TCAA---C--C-CCCCTAACACCTTA--CACAGCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT---AA-TTTTCTGTAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT------AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCAAA-GAACCGCCTGAACTCAA----TACTATT-----------CCA--------------CAGCT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTATTTG-TTTGCCATTCGA-C-TCTCTGCCCTCCA----------CTGGCCC--C-C--ACCACATTCGAAGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCGTG-ATCCAGTTG-ACGAG-
gi|41 : -GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAAcatactgacgatttcagct
gi|5 : tCTC-TCCATAGCTCTTCAA-------A-C-AAAGTAAGTG-TCATTGGTCTGAGCA-ACTTGAATCTCATTGG-CAG-TTGGAGGAGTCA-ACAAACAA-AAACAACCCTTTGAT-GCTGT-CATCGCCAAGTTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GGAGTAATCTCAG--------GAGCAT-GCAT--GTATATGATTTT--TAAAA-GTA-ATT------TGTACATTTACA--GAAATACTTC-A-TCAAGGTC---ATATTAA-TTGTG-AATGA-ACTACAATCAA--CT-CTAA---AAATAGAT---T---AT-----CATTGT-AGGATACTGA-TACTA-GC-CAGGA---AAATTTTAA-TTTG-G-TC-------CACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATGTATA------TGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT--------T-----A-GGATGAAA-TTTAC-TT---ACAAAT-------TA---ATAGATTTAG-CGGA-TC-----CTG-C-GTACA--------TCT---C---CACCGCACA-------C---------------CAAGCGCGTATTTATACTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAAATGGC-------TTAATACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTAATGCCT-C-TCCTCTCTCTCTCTCTCTG------AAATT--AACATGCGAATCGAGTTTACCTGAGCGATG-ATGGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGCAATACTCTCT-
gi|6 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaa-----T---TTTG-TTTG----TTGA-C-T-----CCT--CA-----------TG---A--C-C--A----AT---GGGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----GAG-GCCTG--TG-AACAG-TTAAGCCGtc
gi|6 : cattgcataatggtgtaacttgtcaagttattca--------GAGCAT-CGAT--GTATGTAATTT------AA-ATTTCTT------TTTTTTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG--AA-TTGT------------GAATCAA--CTACT-GTTTGCAT--AT---T---AT-----TATTGT-AGGATACACATTACTA-GCTTAAGACATTTTCTTTTA-T--------ACCCCC------CT---------TT-CTC-AT-----------------------CTG-CCCTA--------------TGTCATATGCGTAATTACAAAA------TGTGTATTGTAC-AAAATA-TAT-AACA--------TAACT---CGTTC---G----C-------A-GGATGAAGTTTTAC-TT---ACAAAT--TG-CTTA--Cgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|6 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttCTGCGTATTTATAGTGGACATTGCAAACGGGTAAAG-TTTATGTTTTGAGCAATTC----------ATAGA---AGACAAA-TCAAAA-CAG-CTGTTCA--------TCT--CC----ACCGCACAAAACACCCAGACATACA-G-ACAAAAACTCGTATTTATATTCATTCTAGAT--------TAGGTATTT-AGCTTTCAAAA--TAC-T--A----AATACACGCTCGT-ATTTAT-TAAATTGAGATT----ACTAATGCTTCC------CC-------CTCTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACA-AT-G--TGC---TGTTTAGATT-CTGGT------TATTATACACTTTATAATCGTTCtgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|7 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcATTAGAATTAATTC-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT---------------GC-A----CTAC----G-ACAC----T-TACACGGC-ACTGTTT--TA-CTGA-------------------GCACGA-GTTTCTT---GATTTAAT---AGAACGTAGAATCAG-A----GC---GTTAT----TTTTAAA-AAT----TCA-CGG-G-ACTT----ATAGC-CTAT-GCTGCAATTTTAT-GTTGAG-AAAA----CAAA-------AGT-GGACGTGGCCAATGCACCTT-GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AAA---TTCAAGATC--AA---GAATCG---ATATTAT--TAT--GG--AAT-----------AGACG----A--AAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT---AA-TTTTTGGTAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA----T------AAA--G--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCC--A-CAACCGCA--AA--CAA--T-TACTTTC-----------CCA--------------CACCT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---TTTG-TTCA----TTGACC-T-----CCTCCCA----------CTT---G--C-C--A----AT---GAGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----GA--AGCTA--TG-ACGAG-TTTAGgc
gi|8 : CTC-GTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGAC-G-TGGGAGGAGTCA-A-AAACAA-AA-CA-CCCTTTGAC-GCTGC-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAAAGTATATT------TGTACATTTACA--GAAA-ACTTC-AATCAAGGTCACTATATTAA-TTGTA-A-TGA-ACTAAAATCA---CT-CT-A---AAAT------------------CATTGT-AGGATACTGATTACTA-GC-CAGGAGT-TTTTTTTTAATTTG-G-TCACCCCCTCCCCGCT---------TTACTCCAT-CTAC----GA-TTAG---GCCACTG-CCTTACTTG----------TGTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTAC-AAAATA-TTA-AACATCTatgtgataatttgaaaagtacagattttgcatc
gi|9 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaGTTTTT---------------------TTT---AA-CTT-CGTTAA-AT-ACAATCTAT-CA--ATAT-A-CA-T--------------GGAA----T------AAA-GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GC
gi|9 : atttgggAGTGTCCATTGGCCTGAGCA-TCTTGAATCGCAATGGTCAG-TGAGAGGAGTCA-ACGAACAA-AA-CTACGCT---AC-G-TGT-C-TCGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC
Alignments
lowQualScore : 3333333333333333 222222222222 999999999999999999999999999999999 11 11111 33333333 2222 1111111 11 222222222222222 111 222222 333333333 1 111 4444444444 1 33333333333333 1 111 1111111 111 2222222 22222222 333333333 2222222 22222222 11111 44444444 444444444444 111111 111 2222222 11 22222 111 1 3333 1111 1 66666666666666666666666 1111111 1111 4444444444444444444 1 1111 1111 22222222222 1111 1111111 111 11111 666666666666666666666 2222222222 111 111 11 33333333333 1111 111 1111 1 2222 2222222222222222 11 2222222 22222222222 111 555555555555555555555 111 222222222222 22222222222 222222222222222 55555555555555 111 11111111 1111 1111 11 222 11 1111 5555555555555555555555555555 1 11 11111111111111111 11111 2222222222 111111 111
lowQualScore : 6 8888888888888888 0 5 7 4 1 4 4 4 1 1 4 4 555555555555 444444444444444444444444444444444 66 55 66666 1 00000000 7 88 1111 3 4444444 55 9 4 4 4 99 4 8 4 22 4 99999 1 444444444444444 000 2 88888 5 5 666666 8 999 2 222222222 4 2 8 8888 4 555 5 3333333333 3 0 3 8 8 8 0 0 3 0 99999999999999 8 6 88 444 6666666 888 0 000 6 3333333 44444444 000000000 1111111 1 33333333 3 1 2 2 6 55555 0 0 5 66 00000000 0 5 88 0 5 0 3 3 444444444444 3 2 666666 77 5 000 1 0 0 5555555 22 5 00000 3 6 555 3 7 0 6666 2 5 1 7777 8 8 8 8 8 0 6 5 3 5 5 5 5 5 5 5 5 5 5 77 77777777777777777777777 8888888 2222 5 5 7 5 4444444444444444444 4 888 3 888 3 5 0000 888 5 0000 66 4 9999 4 4 33333333333 4 4 999 1 3 9999 4444444 4 4 3 555 44444 5 5 000000000000000000000 5 5 5 7777777777 1 77 777 000 77 33 77 5 77777777777 7777 55 000 77 5 2222 1 77 5555 77 7777777777777777 99 6 88 6 1111111 77 5 77 77777777777 0 222 5 555555555555555555555 000 5 88 5 5 4 99999 5 5 555555555555 66666666666 6 99 444444444444444 9999 55555555555555 111 6 6 33333333 6 3 7777 9999 8 8 0 11 99 222 11 9999 1 6666666666666666666666666666 3 6 6 11 66 99999999999999999 4 9999 4 4 11111 1 1111111111 222222 4 55 8888 777 4 8888 4 777 8 4 55 8888 4 4 4 111 4 1 9999 4 1 66 4 1 4
lowQualScore : . ................ . . . . . . . . . . . . ............ ................................. .. .. ..... . ........ . .. .... . ....... .. . . . . .. . . . .. . ..... . ............... ... . ..... . . ...... . ... . ......... . . . .... . ... . .......... . . . . . . . . . . .............. . . .. ... ....... ... . ... . ....... ........ ......... ....... . ........ . . . . . ..... . . . .. ........ . . .. . . . . . ............ . . ...... .. . ... . . . ....... .. . ..... . . ... . . . .... . . . .... . . . . . . . . . . . . . . . . . . . .. ....................... ....... .... . . . . ................... . ... . ... . . .... ... . .... .. . .... . . ........... . . ... . . .... ....... . . . ... ..... . . ..................... . . . .......... . .. ... ... .. .. .. . ........... .... .. ... .. . .... . .. .... .. ................ .. . .. . ....... .. . .. ........... . ... . ..................... ... . .. . . . ..... . . ............ ........... . .. ............... .... .............. ... . . ........ . . .... .... . . . .. .. ... .. .... . ............................ . . . .. .. ................. . .... . . ..... . .......... ...... . .. .... ... . .... . ... . . .. .... . . . ... . . .... . . .. . . .
lowQualScore : 7 3333333333333333 2 0 6 4 1 4 4 4 9 1 4 4 666666666666 111111111111111111111111111111111 99 00 66666 0 00000000 3 66 1111 6 8888888 00 6 0 0 4 22 4 9 4 22 4 33333 9 111111111111111 888 5 55555 0 0 666666 9 555 5 000000000 0 0 0 5555 0 666 0 3333333333 2 8 8 0 0 0 8 0 8 8 44444444444444 0 0 88 888 7777777 222 1 000 7 7777777 22222222 555555555 7777777 5 55555555 7 7 2 5 7 77777 1 1 0 99 55555555 4 7 00 7 0 2 2 6 777777777777 0 5 444444 99 7 000 3 4 7 6666666 99 7 77777 2 0 222 2 0 0 7777 5 0 0 0000 0 0 0 0 0 6 7 0 2 7 7 7 7 7 7 7 7 0 7 99 33333333333333333333333 3333333 1111 7 0 1 7 3333333333333333333 1 888 2 888 1 0 6666 888 0 6666 11 4 4444 4 4 88888888888 4 4 111 6 6 5555 4444444 4 4 1 000 33333 7 7 777777777777777777777 7 7 7 3333333333 7 99 999 999 33 66 99 7 11111111111 9999 99 000 99 7 1111 4 99 0000 99 7777777777777777 22 7 33 7 7777777 99 7 99 11111111111 1 999 7 000000000000000000000 000 7 99 7 7 3 11111 7 7 111111111111 66666666666 7 22 000000000000000 3333 22222222222222 777 7 7 77777777 7 8 0000 8888 0 0 8 00 00 000 00 8888 0 0000000000000000000000000000 3 7 7 99 99 66666666666666666 4 4444 4 4 11111 6 5555555555 555555 0 55 5555 000 0 5555 0 000 0 0 55 5555 0 0 0 333 4 1 4444 4 0 11 4 1 4
consensus : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
Reference ( family-779 ) : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
gi|1 : CTCAGTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCATATTTGAATCTCATTGGGCAG--GGGAGGAGTCATACAAACAACAA-CAAC--TTTGACCGCTGT-CATCGCTAAGT-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----ATATTAATCTCGGT-------GAGCAT-GCATT-GTATATGATTTTATT-AAA-AGATATT-------GAACATTT-CA--AAAAC--TTCTA-GCAAGGTCA-TA-ATTAA-TTGTA-AATGACACTAAAATCAA--CT-CT-A---AAATAG-T---T---ATTTATCCATT-T-AGGATACTGATTACTAAGC-CAGGAATTTTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTACCGTGGA-TTAG---GCCACTG-CCTTACATG----------TGTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---TA--GATGAAA-TTTAC--TTTAGCGGATCCTGCCGTA--CA-ATA---AGACAAATTCAAAATCGGAC-GTTCA--------TCT--CTGA-TACCGC-CA-------CAAATACGCACGCACACAACGGCGTATTTATACTCGTT-T-GATTTAACTAGTAG-TATTTAAGCTTTCAAAA--CGCTT--AATTTAATACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA----CCAA-TAA
gi|1 : atgcaaaaatacttacttttcaaattacgtcacagcataCTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTCAGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT---------------GCCA----CTAC----GC-CAC----T-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACGA-GTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGA----GC---GT-AT----TTT--TA-AAT----TCA-CGGAG-ACTT----ATAGC-CTAT-GCTGCA-TTTTAT-GTTGAGAAAAA----CAAA-------A-T-G-ACGTGGCCAATGCACCT--GATGCAGA-----TACCT-GTT----------------------T-AT-G-TATA----AA----TTCAA-ATC--AA---GAGTCGG--ATTA-AT--TATCAGG-AAAT-----------AGGCG----A-TAAATTTC--C-CT----ACAC-TTA--CACAGTGTCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT---AA-TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCC--A-AGACCGC---AA--CAATTT-TACTGTC-----------CCA--------------CA-C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---TTTGTTTTA----TTGA-C-T-----CCT--CAT---------CTG---C--C-CGTA----AT---GA-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----GAGAAGCTA--TGAACGAG-TTTAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|10 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TTGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGAGTAATATCGG--------GAGCAT-GCATACACATATGATTCT--TAAAA-GTATATTTGTACATGTACATTTACA--GAAACACTTC-A-TCAAGttgactaagtttgaaaagttacagtaattgt
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-T-------GTCA-GCAAACAA-AA-GAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAGAGTAATCTCGG--------GAGCAT-GCAT--GTATATGGTTTT--TAAAA-GTATATT------TGTACATTCACA--GAAACACTTC-A-TCAAGGTCA-
gi|12 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaa---GATTTA-T---AGAATGTCAAATCAG-A----AT---GT-GT----ATT--AT-AAC----TCA-TTGAC-A-TT----A-----ATAC-GCTGCA-TTTTT--GTCAAG-AAAAA---CAAACAATAATAGT-A-ACGTGGCCAATGTGCCA--AATGCAGG-----TA-CT-CTTACAT-----------------GT-AT-G-TATATTTTAT----TTTTAG--C--AAAC-AAGTGGA--AGAG-AA--AAC--TG-GAAT-----------AAGCA----A-TAAA---C--C-CT----AAAC--TA--AATA---CTTG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|13 : --CACAGA---CGACAAA-TTATAA-C---------A--------TCTGCCC---CCCCCCACA-------CACACACACA-G-ACACACGCGCGTATTTGTATCCATTCT-GGGT----TAGT--TTATTT-AGCTTTCAAAA--TGC-------TTATTACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTAATC-CC-A-TAACCCCTATATAT---TG------AAA-T--AACAT-TG---TGATTTTGCCTGAGAGCTATAT-GAA-GTACAT-TTTAGATT-CTGCCTAag
gi|14 : tgttatggggaattTAACTCTC--AGTACTCTA-CAGGAGTACG-GC--ATTG-TCTGAGCA-ACTTGAATCC--TTGG-CA--TGG-AGG--TCA-ATACAAAA-AA-CG----TTTGAC-GCT-T-CATCGCTAAG-------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-ACAT--GTATATGATTTT--TCAAA-GTATATT------TGTACATTTACA--GAAA-ACTTt
gi|15 : caaaactgttacttttaaatttactacagctGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAACAGA----A---AT-----CATTG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|16 : gcgGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT--A-AAA-GTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAACAGA----A---AT-----CATTG-------------------GC-CAGGA---AAATTTTTA-TTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GA-TTAAATTATCACTG-CCTT
gi|17 : gcg-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATG
gi|17 : --TT-TGT--GATG-----------CGTTTG---T-TGTTGTTG--------------------TTTTTAAA-TTT--GGGAA-AT-GGAGTCTC-TCA--ATATTA-TA-TA--A---------AGTAA----T------Aaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|18 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TGGGAGGAGTCA-ACAAACAA-AA-CAACCTTTCGAC-GCTAT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TTAAA-GTATATT------TG---------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CT-A---AAATAGAT---T---AT-----g
gi|19 : -CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AATATCAGTTGATATAGAGCTA----GTAC----ACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT---AGA------------------GC---TT-GT----TTT--AA-ACC----TCA-ATGAG-ACTG----AT-----T-T-GCTGCA-TTTTTC-GTCAAG-AGAA----
gi|2 : CTC-GTCATAGCT-----------------------AGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAGGTGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGTTCATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------G-GCAT-GCAT--GTATATGATTTT--T-AAA-GTATAAT------TGTA--TTTACA--GACA-ACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAAAATCAA--CT-CT-A---AAATAGAT---TTTAAT------ATTGTTAGGATA-TGATTACTA-GC-CAGGA---TTTTTTTTAATTTG-GGTCATCCC-TCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAA-TACCTATTCATAG----CATT---AA-GAATGAAAATTTAC-TTTTAACGGATCCTG-CGTA--CATATA---AGACAAA-TCAACT-CGGAC-GTTCA--------TCT--CTGGATACCGCACA-------CAAACACGCA-C-GCACAAAGGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-TTAA--TTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-AATAATCTCTCTCTCTCTCTG------ATATT--AACAT-TG---CGAGTTTACCTGAGCAATG-ATTGGATGT-TATGTTTAGATG-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCA-TACTCTCT-CTCT-C--TCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTC-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GC-A----CTAC----GC-CAC----T-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----GTAGC-ATAT-TCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCACCT--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGCCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AATTTTTCGGTAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-----------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-AGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTT----ATGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-AGCTA--TG-ACGAGTTTTAGCTG
gi|20 : GATGACGGAGCG--TCGAAGGCG---TGG-----T---TTTT-GTTG----TTGA-TGT-----AATCCAAAAACCGGAGTCTG---CAACGT--A----A----GAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|21 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaa-CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----GAG-AGCTA--TG-ACGAG-TTTAGCTGa
gi|22 : tagatgcaaaatactgtaacttttcaaattacatca--CATAGA---AGACAAA-TCAAAA-GAG-CTGTTTACATCCCCTTCT--CC---C-CCGCACA-------CAAACA--------------CGCGCATTTATAT----------------------TTATTT-AGC-TTCAAAA--CGC----A--TTA----------TT-ACTTAC-TAACTGAAGATTT-TGATAAGT
gi|23 : aatgctattgggaaaagtcgtttgaggaattCTCCCA----------CTG---A--C-C--A----AT---GGGAT-T----CAA-GT---TGCTCA-TAC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----GAA-ACGTA--TG-AAAAG-TTTAGCC
gi|24 : tatagGAC--AGCG--TCGAAGC-G---CGG-----T---TTCG-TGTG----TTGA-C-T-----CCTCCCA----------ATG---A--C-C--A----AG---GATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----GAG-ACCTG--TG-CAAAG-TTTAGCCGatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|25 : cattaTGCGACC--GATGCAGG-----TA-CT-GTTACATCATGGCATCATTGGCATGT-ATCG-TATA----GT----TTCAAGATC--AA---GA-------------T--TAT--GG-GAAT-----------AGGCGACTTA-CAAA---C--C-CT----AAAC-TTA--CAC-----CTG--TAAA-TA-A-----------AA
gi|26 : GAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATTCCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATTATA-----------GCTAGTATTTAC----ATACAG----T-AGCAAGGC-
gi|27 : ATTAA-TTGAG-AATGA-ACTAGAATCAA--CT-CCCA---AAATAGATGCGC---ATG----CGTT-T-AC-ATAATTATCATTG----TAGGA---TTT----------A-G-TCGCCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-
gi|28 : TAGTTATTT-AGCTTTCAAAA--CTC-T------TAATACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTCCTACTA-------A-TGCTCTCTCTCTCTCTCT
gi|29 : TCTATCTG------AAATC--AATAT-GG---CAATTTTACCCTAGCGAT---T---ATGT-TATGTCTAGATT-CCGCC----AAT----TATGCTTCAGAGTGG-------TTTGCAGTATTTTctctc
gi|3 : tcgGATTT-TAATCAGTTCTTACTA-----------ATCTCTCTCT------G------AAATT--AACAT-TG---CGAGTT----------ATG----GGATGT-TATGTTTAGATG-CTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GCAATACTCTCT-CTCT-CTCTCTC-------T----CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATTC-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATATA------------GCTAGTATTTACATAAGCACAG----T-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACGA-GTTTCTC---GATTTAAT---AGAACGTAGAACCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTAT-GTTGAG-AAAA----CAAA-------AGT-G-ATGTGGCCAATGCATCT--GATGCAGG-----CA-CT-GTT---------------------AC-AT-G-TATGT---AATATTTTC-AGATCCTAAATTGAGTCGG--ATAT-GTA-TAT--AGCGAATAAG--------AAGCGC---ATTAAA---CGTCGCT----ACACATTAGTCAC----CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT---AA-CATTTGGT---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTA----TATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCC--ACCGACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA-CTTTG-GCGATGCC--ACCG--TCAAGGG-----------------------TTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---CAGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----GAG-ACGTA--TG-AAAAG-CTTGGCCG
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-A----GC---GC-GT----TTT--AA-AAC----TCA-TTGAG-ACTT-------GC---AT-GCTGTA-TTTTTC-GTCAAG-tgacagaactcgaaaagttacagcattttgcatttag
gi|32 : gtg-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CAAC----GA-TTAG---GCCACTG-CCTTACATGTACATGTATATGTCTTGTACGTAATTA
gi|33 : TT--AA-AAG----TCA-TGAAG-ACT-------A---ATAT-GCTGCA-ATTTTC-GTTGAG-AAAAACA-CAAT-------AGT-G-ACGTGGCAAATGCCCCT--GATG
gi|35 : TCTCTG------AAATT--AACAT-TG---CGATTGTGCCTGAGCGATG-AT---ATGC---TGCTTGGCTT-CTGCCTAT--------TACGCTTTA
gi|37 : aCGGATCCTG-CGTATTTATAGT---AGACAc
gi|38 : ataagatatatatatttgT-ACTAGTAATTATTT-AGCTTTCAAAA--CGC-------TTAATACGCATt
gi|39 : -G-TCACCCCCTCCCCGCT---------AT-CTC-AT-CTAC----GA-TTAG---GC
gi|4 : CTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATTCCAGTT-A-CCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT---------------GC-A----CTAC----G-ACTC----TTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAG-AAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAAAACCACAAA-------AGTTG-AC-TGCCAAATGCACCCTCGATGCAAGGACTCTA-CTTGTT---------------------GTCAT-GGTATA----AA----TTCACGATC--AA---GAGCCGGCCATAT-ATCATAT--GG-GAATCACTACGCTGTAGGGC----A-TCAA---C--C-CCCCTAACACCTTA--CACAGCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT---AA-TTTTCTGTAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT------AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCAAA-GAACCGCCTGAACTCAA----TACTATT-----------CCA--------------CAGCT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTATTTG-TTTGCCATTCGA-C-TCTCTGCCCTCCA----------CTGGCCC--C-C--ACCACATTCGAAGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCGTG-ATCCAGTTG-ACGAG-
gi|41 : -GTTGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAAcatactgacgatttcagct
gi|5 : tCTC-TCCATAGCTCTTCAA-------A-C-AAAGTAAGTG-TCATTGGTCTGAGCA-ACTTGAATCTCATTGG-CAG-TTGGAGGAGTCA-ACAAACAA-AAACAACCCTTTGAT-GCTGT-CATCGCCAAGTTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GGAGTAATCTCAG--------GAGCAT-GCAT--GTATATGATTTT--TAAAA-GTA-ATT------TGTACATTTACA--GAAATACTTC-A-TCAAGGTC---ATATTAA-TTGTG-AATGA-ACTACAATCAA--CT-CTAA---AAATAGAT---T---AT-----CATTGT-AGGATACTGA-TACTA-GC-CAGGA---AAATTTTAA-TTTG-G-TC-------CACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATGTATA------TGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT--------T-----A-GGATGAAA-TTTAC-TT---ACAAAT-------TA---ATAGATTTAG-CGGA-TC-----CTG-C-GTACA--------TCT---C---CACCGCACA-------C---------------CAAGCGCGTATTTATACTCATTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAAATGGC-------TTAATACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTAATGCCT-C-TCCTCTCTCTCTCTCTCTG------AAATT--AACATGCGAATCGAGTTTACCTGAGCGATG-ATGGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGCAATACTCTCT-
gi|6 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaa-----T---TTTG-TTTG----TTGA-C-T-----CCT--CA-----------TG---A--C-C--A----AT---GGGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----GAG-GCCTG--TG-AACAG-TTAAGCCGtc
gi|6 : cattgcataatggtgtaacttgtcaagttattca--------GAGCAT-CGAT--GTATGTAATTT------AA-ATTTCTT------TTTTTTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG--AA-TTGT------------GAATCAA--CTACT-GTTTGCAT--AT---T---AT-----TATTGT-AGGATACACATTACTA-GCTTAAGACATTTTCTTTTA-T--------ACCCCC------CT---------TT-CTC-AT-----------------------CTG-CCCTA--------------TGTCATATGCGTAATTACAAAA------TGTGTATTGTAC-AAAATA-TAT-AACA--------TAACT---CGTTC---G----C-------A-GGATGAAGTTTTAC-TT---ACAAAT--TG-CTTA--Cgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|6 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttCTGCGTATTTATAGTGGACATTGCAAACGGGTAAAG-TTTATGTTTTGAGCAATTC----------ATAGA---AGACAAA-TCAAAA-CAG-CTGTTCA--------TCT--CC----ACCGCACAAAACACCCAGACATACA-G-ACAAAAACTCGTATTTATATTCATTCTAGAT--------TAGGTATTT-AGCTTTCAAAA--TAC-T--A----AATACACGCTCGT-ATTTAT-TAAATTGAGATT----ACTAATGCTTCC------CC-------CTCTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACA-AT-G--TGC---TGTTTAGATT-CTGGT------TATTATACACTTTATAATCGTTCtgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|7 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcATTAGAATTAATTC-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT---------------GC-A----CTAC----G-ACAC----T-TACACGGC-ACTGTTT--TA-CTGA-------------------GCACGA-GTTTCTT---GATTTAAT---AGAACGTAGAATCAG-A----GC---GTTAT----TTTTAAA-AAT----TCA-CGG-G-ACTT----ATAGC-CTAT-GCTGCAATTTTAT-GTTGAG-AAAA----CAAA-------AGT-GGACGTGGCCAATGCACCTT-GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AAA---TTCAAGATC--AA---GAATCG---ATATTAT--TAT--GG--AAT-----------AGACG----A--AAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT---AA-TTTTTGGTAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA----T------AAA--G--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCC--A-CAACCGCA--AA--CAA--T-TACTTTC-----------CCA--------------CACCT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---TTTG-TTCA----TTGACC-T-----CCTCCCA----------CTT---G--C-C--A----AT---GAGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----GA--AGCTA--TG-ACGAG-TTTAGgc
gi|8 : CTC-GTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGAC-G-TGGGAGGAGTCA-A-AAACAA-AA-CA-CCCTTTGAC-GCTGC-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAAAGTATATT------TGTACATTTACA--GAAA-ACTTC-AATCAAGGTCACTATATTAA-TTGTA-A-TGA-ACTAAAATCA---CT-CT-A---AAAT------------------CATTGT-AGGATACTGATTACTA-GC-CAGGAGT-TTTTTTTTAATTTG-G-TCACCCCCTCCCCGCT---------TTACTCCAT-CTAC----GA-TTAG---GCCACTG-CCTTACTTG----------TGTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTAC-AAAATA-TTA-AACATCTatgtgataatttgaaaagtacagattttgcatc
gi|9 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaGTTTTT---------------------TTT---AA-CTT-CGTTAA-AT-ACAATCTAT-CA--ATAT-A-CA-T--------------GGAA----T------AAA-GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GC
gi|9 : atttgggAGTGTCCATTGGCCTGAGCA-TCTTGAATCGCAATGGTCAG-TGAGAGGAGTCA-ACGAACAA-AA-CTACGCT---AC-G-TGT-C-TCGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
blockSeqs : . AGTACTCTACAGG . G G T . . A A C . T TTCAACGCGACT AGTAATTGTTGCGGTCGT GA AG TAGTC G ATTACGTC C AC TA A TGTACAT TT C . A C TA A G . AC A GTTT A TGCGCATG GTT G ATTAT . T CATTTT A CC C TTATATATA A A G . T ATT C TACATGTATA G G A T T C A AGTGGACATTGCAA C A GT TTA CCTGCG TTT TTT . CGGAC CATCCCCT CTGGATA AAACACC C CACAGA G C A C A TTAC . AT TTAAT . TA A T G ATGCCTCTCC C C TACTCA AA G AAT G GATTGG T A TACCA A A TTT T G G ACGC C G A ATTC . C G . C T C T A . T . G A T A A . AC ATCAGTTGATATAGAGCTA ATAAGCA ACAA T C C G CTTGTTGCCTGGCCTTGCT A CCC A . A . AGCC AGA T CGCT TA C ATTT A C TATGATAGCTG T A ATT C . ACCA CAATAAT T G G CTC GACTC . T ACATCATGGCATCATTGGCAT C C G TAATATT T CT ATT GCC TT CA . C CACTACGCTGT ACTT TT . GT G CCTA A GT AGCT GT TAAAAAGGATGTTC GC A AC T CCTTATA CT . AC . TTG . GCATCTGCATGTGATGAGCGT TTA T TC G . G TCAAC T T AGATGTCAGT TATATTC . GT TTATGATAT TGA AACTTATTTAGAT . . A CGCTG C T . CCT A . AA CC CTG CT TC T TTCACAATGGGCCAGTCGCGGTGTTGAA G T G GG GT GATTCTGTCTA . CCAT C G CTCTG C AAACCGGAGT GCCC G . CCAC TCG A CTAA A GGC C G TA AAGC G C A TCT T G CCCC . G GT . C T
blockSeqs : . CAAACAA . G . G . . . A C . . . GTAATTGTTGCGGTCGT . AG T G ATTACGTC C . TA . T . C . . . TT . G . AC . CA A TTTTAAT GT G CACAT . . GTTTT A CC C TTATATATA . A G . . ATT . TATA G T . . . C A AGCATTA . T T TTG CCTGCG C . . GAGCT . GCCCCC . A CGCACG A T G C . TTAC . . AT . C . T A ATCCCATAA C C . . . . T GATGGG T . TACT A A . T A . CTC C G A . . . . . . . C G . . . . . . . . A . . TATAGCTAGTAT ACA . . . T . . A . A . A . . . . . . . . . . GTAGCA . . TC T . ACA . . . A TT . . . ACAT . . . TTTTAT A . AC A G A . . AAG C T . . . . C . AGG . TTATA . . . . . . . . . T . GTT . . TT . . G TCA . . ATA TTTTT . . ACGTCATC CT TACACC . . . ATCCT . T . T . . . A A . T T CCA C . . A . GTTGCACAGT . . . . . C . CAA . . . . . . . . T . . . . . . TCT . G . . G . . C .
blockSeqs : . AAACAA . G . G . . . A C . . . GTAATTGTTGCGGTCGT . G T T . . . TC . T . C . . . TT . . . . . AA A TTAT GT G CTGAT . . AAA . GG C . . C . . . . . . A C . . . . G GC . . T . TGCT C . . CAGCT . CCC . A TACAGA G T A C . T . . TA . T . T A CCAATAA C A . . . . G AATG T . TAT A T . . A . . G T . . . . . . . . T . . . . . . . . A . . ATAGCTAGTAT ATA . . . T . . A . A . A . . . . . . . . . . ATAGCA . . AT C . A . . . G A . . . . . . . AAA A . . G T . . . . . T . . . . . . AGG . CTAA . . . . . . . . . T . G . . TC . . C TTA . . A T . . ACAT T A . . . AC . T . T . . . G . . T A CCA . . . . . CGTGGT . . . . . C . C . . . . . . . . . . . . . . . TC . T . . C . . A .
blockSeqs : . AAACAA . A . G . . . A C . . . TAATTGTC . . T G . . . TT . T . C . . . TT . . . . . A A TTAT GT G TGAT . . AAA . G C . . . . . . . . . G . . . . . . T . . T . TC C . . CTGC . CCA . G . A T A C . . . . T . C . T A ATGC C C . . . . T GGG T . A . . . . . . . . . . . . T . . . . . . . . A . . GCA GC . . . T . . G . A . C . . . . . . . . . . ATAGCC . . AT T . . . . . A T . . . . . . . AA A . . G T . . . . . C . . . . . . A . TAA . . . . . . . . . T . G . . TT . . G AAA . . A T . . ATAG T G . . . AC . . . . . . . C . . . T CCA . . . . . GTTGT . . . . . C . C . . . . . . . . . . . . . . . CT . T . . C . . A .
blockSeqs : . ACACGG . T . T . . . A C . . . GT . . T G . . . TA . T . T . . . TT . . . . . A A TTAT G . CTGA . . TTT . G C . . . . . . . . . . C . . C . CCA . . . . . . . . . . . T . T . T C CC T C . . . . G GAT . . . . . . . . . . . . . . . . . . GCA GA . . . T . . . . A . A . . . . . . . . . . AA . . TC T . . . . . C C . . . . . . . GT A . . . T . . . . . T . . . . . . . . TAA . . . . . . . . . . . T . . C . . C CA . . A T . . TTAT C A . . . AC . . . . . . GCGGT . . . . . C . A . . . . . . . . . . . . . . . CT . T . . C . . A .
blockSeqs : . . . . G . . . A C . . . GT . . . T . . . A . T . C . . . . . . . . . A A AAT G . . . . TTT . G C . . . . . . . . . . . . T . T . T . A . C . . . . T T . . . . . . . . . . . . . GCA GA . . . . . . . . . . . . . . . . . . . . . AT . . TC C . . . . . A T . . . . . . . AA . . . . . . . . . . . . . . . . . . . TAA . . . . . . . . . . . . . C . . . . . . GTTGT . . . . . C . A . . . . . . . . . . . . . . . CT . G . . T . . C .
blockSeqs : . . . G . . . . G . . . GT . . . T . . . A . T . . . . . . . . . . . A . AAT T . . . . AAA . G . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . GC . . AT T . . . . . A T . . . . . . . . T . C . . . . . . . . . . . . . . . TC . T . . C . . A .
blockSeqs : . . . . . . . . . . . G . . . T . T . . . . . . . . . . . A . . . G . . . . . . . . . . . . . AA . . T T . . . . . . . . . . C . A . . . . . . . . . . . . . . . CT . G . . G . . C .
blockSeqs : . . T . . . T . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . TT
blockSeqs : . . . . . . . . T .
blockSeqCons : T**** ******** ** TA** T****** TTAT*********** AAA*** **** GCT*********** T* CCTGC** CGGCT** CCA****** CGCAGA** T**** T******* T* ATNC******** GATGG** T* GCAGTTAT*************** *** ATAGCA***** ** *** AG** TAA************* ** *********** ATAT*********** A************* *** **** T*** T*** GTTGT************ ********** **
originalCons : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--T-AAA-GTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGA---TTTTTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAG----CATT---AA-GGATGAAA-TTTAC-TTTTAACGGATCCTG-CGTA--CATAGA---AGACAAA-TCAAAA-CGG-C-GTTCA--------TCT--CC---CACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATTT-ACTAGTAGTTATTT-AGCTTTCAAAA--CGC-T--A--TTAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA----CC-A-TAATCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT---------------GCTA----CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTT----ATAGC-ATAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG-GTCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
finalCons : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTTTA--AAA-GTATATTT------GTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAATAGATTAT-----------CATTGT-AGGATACTGATTACTA-GC-CAGGAAAA---TTTTTA-TTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA-TTAG---GCCACTG-CCTTACATG----------TGTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATGCT-----------A-GGATGAAA-TTTACT-TTTAACGGATCCTGC--TA--CATAGA---AGACAAA-TCAAAACGGCT--GTTCA--------TCTCCA------CCGCACA-------CAAACACGCAGA--CACAAGCGCGTATTTATACTCGTTCT-GATT----TAGTAGTTATTT-AGCTTTCAAAA--CGCT-------TAATACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTAATNC--------TCTCTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATGATGG--ATGTT-ATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CATGCAGTTAT---------------CTAC----GCACAC----T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-A----GC---GT-AT----TTT--AA-AAT----TCA-CGGAG-ACTTATAGCA-----TAT-GCTGCA-TTTTNC-GTCGAG-AAAA----CAAA-------AGT-G-ACGTGGCCAATGCGCCC--GATGCAGG-----TA-CT-GTT---------------------GT-AT-G-TATA----AA----TTCAAGATC--AA---GAGTCGG--ATAT-AT--TAT--GG-GAAT-----------AGGCG----A-TAAA---C--C-CT----ACAC-TTA--CACAG--TCTG--TAAATAA-------------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTAATAT-----------TG-T--AAGAA-------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TAT---TT-AC-TATTCC--A-NGACCGC---AA--CAAT---TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGGGTTGT------------TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC
Alignments
lowQualScore : 3333333333333333 222222222222 999999999999999999999999999999999 11 11111 33333333 1111111 111 11 222222222222222 111 222 2222 333333333 1 111 333333333333333 1 555555555 1 2 3333333 111 22222222 22222222 2222222 22222222 22222222222 11111 1111 333333333333333333333333 111111 111 2222222 11 22222 111 1 3333 1111 1 888888888888888888888888 1111111 111111 4444444444444444444 1 1 111111 111111 22222222222 111 1111111 1111 11111 666666666666666666666 1 2222222222 111 11 111 222222222222222 1111 111 1111 22222 2222222222222222 11 2222222 22222222222 111 555555555555555555555 111 222222222222 22222222222 222222222222222 55555555555555 111 11111111 1111 1111 11 222 11 1111 5555555555555555555555555555 1 11 11111111111111111 11111 2222222222 111111 111
lowQualScore : 6 8888888888888888 0 5 7 4 1 4 4 4 1 1 4 4 555555555555 444444444444444444444444444444444 66 55 66666 1 00000000 7 88 777 4444444 55 9 4 4 4 333 4 8 4 22 4 4 777 4 1 444444444444444 000 2 888 5 5 5 111 8888 888 2 222222222 4 2 8 8888 4 555 5 444444444444444 3 0 3 8 8 8 0 5 3 333333333 6 0 0 3 7 2222222 1 111 6 6 2 4 44444444 11111111 1111111 1 33333333 3 1 2 2 6 33333333333 0 66 5 777 22222 0000 5 88 0 3 5 1 6 0 666666666666666666666666 666666 77 5 000 1 0 0 5555555 22 5 00000 3 6 555 3 7 0 6666 2 5 1 7777 8 8 8 8 8 0 6 5 3 5 5 5 5 5 5 5 5 5 5 77 222222222222222222222222 5 8888888 666666 5 5 7 5 4444444444444444444 4 888 3 8888 0 444444 222222 66 4 9999 4 4 33333333333 4 4 999 1 3 8888 111 4444444 4 4 3 5555 44444 5 5 000000000000000000000 5 1 5 1111111111 1 77 777 0 77 77 33 000 5 888888888888888 7777 55 000 77 5 2222 5 5 77777 77 7777777777777777 99 6 88 6 1111111 77 5 77 77777777777 0 222 5 555555555555555555555 000 5 88 5 5 4 99999 5 5 555555555555 66666666666 6 99 444444444444444 9999 55555555555555 111 6 6 33333333 6 3 7777 9999 8 8 0 11 99 222 11 9999 1 6666666666666666666666666666 3 6 6 11 66 99999999999999999 4 9999 4 4 11111 1 1111111111 222222 4 55 8888 777 4 8888 4 777 8 4 55 8888 4 4 4 111 4 1 9999 4 1 66 4 1 4
lowQualScore : . ................ . . . . . . . . . . . . ............ ................................. .. .. ..... . ........ . .. ... ....... .. . . . . ... . . . .. . . ... . . ............... ... . ... . . . ... .... ... . ......... . . . .... . ... . ............... . . . . . . . . . ......... . . . . . ....... . ... . . . . ........ ........ ....... . ........ . . . . . ........... . .. . ... ..... .... . .. . . . . . . ........................ ...... .. . ... . . . ....... .. . ..... . . ... . . . .... . . . .... . . . . . . . . . . . . . . . . . . . .. ........................ . ....... ...... . . . . ................... . ... . .... . ...... ...... .. . .... . . ........... . . ... . . .... ... ....... . . . .... ..... . . ..................... . . . .......... . .. ... . .. .. .. ... . ............... .... .. ... .. . .... . . ..... .. ................ .. . .. . ....... .. . .. ........... . ... . ..................... ... . .. . . . ..... . . ............ ........... . .. ............... .... .............. ... . . ........ . . .... .... . . . .. .. ... .. .... . ............................ . . . .. .. ................. . .... . . ..... . .......... ...... . .. .... ... . .... . ... . . .. .... . . . ... . . .... . . .. . . .
lowQualScore : 7 3333333333333333 2 0 6 4 1 4 4 4 9 1 4 4 666666666666 111111111111111111111111111111111 99 00 66666 0 00000000 3 66 111 8888888 00 6 0 0 4 333 4 9 4 22 4 4 888 4 9 111111111111111 888 5 444 0 0 0 222 1111 666 5 000000000 0 0 0 5555 4 666 0 333333333333333 2 8 8 0 0 0 8 0 2 555555555 5 0 0 2 3 3333333 7 777 7 7 2 2 22222222 22222222 7777777 5 55555555 7 7 2 5 7 33333333333 1 99 0 111 55555 6666 7 00 7 2 0 4 2 1 222222222222222222222222 444444 99 7 000 3 4 7 6666666 99 7 77777 2 0 222 2 0 0 7777 5 0 0 0000 0 0 0 0 0 6 7 0 2 7 7 7 7 7 7 7 7 0 7 99 444444444444444444444444 7 3333333 444444 7 0 1 7 3333333333333333333 1 888 2 9999 0 444444 222222 11 4 4444 4 4 88888888888 4 4 999 6 6 5555 000 4444444 4 4 1 0000 33333 7 7 777777777777777777777 7 4 7 6666666666 7 99 999 7 99 33 66 999 7 111111111111111 9999 99 000 99 7 1111 7 7 99999 99 7777777777777777 22 7 33 7 7777777 99 7 99 11111111111 1 999 7 000000000000000000000 000 7 99 7 7 3 11111 7 7 111111111111 66666666666 7 22 000000000000000 3333 22222222222222 777 7 7 77777777 7 8 0000 8888 0 0 8 00 00 000 00 8888 0 0000000000000000000000000000 3 7 7 99 99 66666666666666666 4 4444 4 4 11111 6 5555555555 555555 0 55 5555 000 0 5555 0 000 0 0 55 5555 0 0 0 333 4 1 4444 4 0 11 4 1 4
consensus : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TAAAAGTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAA-TAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGAAA-TTTTTTT--ATTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAGCAT-TAGGA-TGAAA-TTTACTTTTAACGGATCCTGC--TACATAGA---AGACAAA-TCAAAA-CGGCCGTTCA--------TCTC---C----ACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATT---TA---G-TAGT--TATTT-AGCTTTCAAAA--CGC-----TTAAT----ACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA---A------TNCT-----CT---CTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT----G-C-AG-T-A---T------CTA-C----GCACAC------T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-AGC------GT-A----TTTT--AA-AA----TTC-ACGGAG-ACTT----ATAGC-ATA-TGCTGCA-TTTT-NCGTCGAG-AAA----A---CAAA-------AG-TG-ACGTGGCCAATGCGCC--C-GATGCAGG-----TA-C-TGTT---------------------GT-AT-GTAT-A----AA----TTCAAGATC--AA---GAGTCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
Reference ( family-779 ) : CTC-GTCATAGCTCTC--A-------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGANTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TAAAAGTATATT------TGTACATTTACA--GAAACACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAGAATCAA--CT-CT-A---AAA-TAGAT---T---AT-----CATTGT-AGGATACTGATTACTA-GC-CAGGAAAATTTTT----ATTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTNGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCAT-GC---TAGGA-TGAAA-TTTACTTTTAACGGATCCTGC--TACATAGA---AGACAAA-TCAAAA-CGGCTGTTCA--------TCTC---C----ACCGCACA-------CAAACACGCA-G-ACACAAGCGCGTATTTATACTCGTTCT-GATT---TA---G-TAGT--TATTT-AGCTTTCAAAA--CGC-----TTAAT----ACGCATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTA---A------TNCT-----CT---CTCTCTCTCTCTG------AAATT--AACAT-TG---CGATTTTGCCTGAGCGATG-AT-GGATGT-TATGTTTAGATT-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCAATACTCTCT-CTCT-C-CTCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTCCAGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT----G-C-AGTT-A---T------CTA-C----GCACAC------T-AGCACGGC-ACTGTTTGTTA-CTGA-------------------GCACGAAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-AGC------GT-A----TTTT--AA-AA----TTC-ACGGAG-ACTT----ATAGC-ATA-TGCTGCA-TTTT-NCGTCGAG-AAA----A---CAAA-------AG-TG-ACGTGGCCAATGCGCC--C-GATGCAGG-----TA-C-TGTT---------------------GT-AT-GTAT-A----AA----TTCAAGATC--AA---GAGTCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACA--G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AA-TTTTCGGTAA-AT-GGAGTCTCTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAA-GG--CATTTTTA-----A-TA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-NGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCGATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-ANCTA--TG-ACGAG-TTTAGCCG
gi|1 : CTCAGTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCATATTTGAATCTCATTGGGCAG--GGGAGGAGTCATACAAACAACAA-CAAC--TTTGACCGCTGT-CATCGCTAAGT-------------TGGGAAA----------------GT---------------GGAAT--AGCGGG-CTAAGA--TCTT----ATATTAATCTCGGT-------GAGCAT-GCATT-GTATATGATTTTATTAAAAG-ATATT-------GAACATTT-CA--AAAAC--TTCTA-GCAAGGTCA-TA-ATTAA-TTGTA-AATGACACTAAAATCAA--CT-CT-A---AAA-TAG-T---T---ATTTATCCATT-T-AGGATACTGATTACTAAGC-CAGGAATTTTTTTTTT-ATTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CTACCGTGGATT-AG---GCCACTGCC-TTACATG----------T----GTCTTATACGTAAT-ATAA-ATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAACTACCTATTCATAGCATTTA-GA-TGAAA-TTTAC-TTTAGCGGATCCTGCCGTACA-ATA---AGACAAATTCAAAATCGGACGTTCA--------TCTCTGAT----ACCGC-CA-------CAAATACGCACGCACACAACGGCGTATTTATACTCGTT-T-GATT---TA---ACTAGTAGTATTTAAGCTTTCAAAA--CGCTTAATTTAAT----ACGCATTCTTAACTTA--TAA-TTGAGA-TT-TAATCAG-TCTTACTA---
gi|1 : atgcaaaaatacttacttttcaaattacgtcacagcataCTT-AAAT----CTGTTTTAGC-AAT-ATCT-ATAATATTTGAAT-AATTTCAGTTTA-CCTATTATTG-CTTTACT-TCA-CAT-G-CAATTTATCCCACCA--CAT----G-C----C-A----------CTA-C----GC-CAC------T-AGCACG-C-AATGTT-GTTA-CTGA-------------------GCACGA-GTTTCTC---GATTTAATTTTAGAACGTAGAATCAGGAGC------GT-A----TTTT--TA-AA----TTC-ACGGAG-ACTT----ATAGC-CTA-TGCTGCA-TTTT-ATGTTGAGAAAA----A---CAAA-------A--TG-ACGTGGCCAATGCACC--T-GATGCAGA-----TACC-TGTT----------------------T-AT-GTAT-A----AA----TTCAA-ATC--AA---GAGTCGG--ATT-AAT--TATCAGG-AAA-----------T---AGGCG----A-TAAATTTC--C-CT----ACA-C-TTACACAGTG--TCTG--TAAA-T--------------AAAAATA--CAGTT-GGTTCA-TT-------TTAA--TTCTGT--GATGCCAATACCCTTCGTTTGT--TGTGTTGTTG---------------------TT---AA-TTTCGGATAA-ATGGGAGTCTTTTCA--ATATCA-TA-TA--A---------AGTAA----T------AAATGG--CATTTTTA-----AGTATT----TG-T--AAGACA------------ATATGCTTGTATC-A-A---C--A-GCCTGTGGGGTA--TATT-ACGTATTCC--A-AGACCGC---AA--CAATTT-TACTGTC-----------CCA--------------CA-C--TA-GCAATGAC--AGCG--TCAAAGG-G----TG-----T---TTTGTTTTA----TTGA-C-T-----CCT--CAT---------CTG---C--C-CGTA----AT---GA-AT-T----CAA-GT---TGCTCA-GAC-C---AT----GAGC-G-CTT-ACTC-CG-TGT----GAGAAGCTA--TGAACGAG-TTTAGCccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaatctgttttagcaatatctataatatttgaataatttcagtttacctattattgctttacttcacatgcaatttatcccaccacatgccactacgccactagcacgcaatgttgttactgagcacgagtttctcgatttaattttagaacgtagaatcaggagcgtatttttaaattcacggagacttatagcctatgctgcattttatgttgagaaaaacaaaatgacgtggccaatgcacctgatgcagatacctgtttatgtataaattcaaatcaagagtcggattaattatcaggaaataggcgataaatttccctacacttacacagtgtctgtaaataaaaatacagttggttcattttaattctgtgatgccaatacccttcgtttgttgtgttgttgttaatttcggataaatgggagtcttttcaatatcatataaagtaataaatggcatttttaagtatttgtaagacaatatgcttgtatcaacagcctgtggggtatattacgtattccaagaccgcaacaattttactgtcccacactagcaatgacagcgtcaaagggtgttttgttttattgactcctcatctgcccgtaatgaattcaagttgctcagaccatgagcgcttactccgtgtgagaagctatgaacgagtttagcttgactaagtttgaaaagttacagtaattgt
gi|10 : atgcaaaaatacttacttttcaaattacgtcacagcatactcagtcatagctctcacacggagtaagcgctcattggtctgagcatatttgaatctcattgggcaggggaggagtcatacaaacaacaacaactttgaccgctgtcatcgctaagttgggaaagtggaatagcgggctaagatcttatattaatctcggtgagcatgcattgtatatgattttattaaaagatattgaacatttcaaaaacttctagcaaggtcataattaattgtaaatgacactaaaatcaactctaaaatagttatttatccatttaggatactgattactaagccaggaattttttttttatttggtcaccccctccccgctttctcatctaccgtggattaggccactgccttacatgtgtcttatacgtaatataaatgtgggtgtgtattgtacaaaatattaaacatctctaagtaactacctattcatagcatttagatgaaatttactttagcggatcctgccgtacaataagacaaattcaaaatcggacgttcatctctgataccgccacaaatacgcacgcacacaacggcgtatttatactcgtttgatttaactagtagtatttaagctttcaaaacgcttaatttaatacgcattcttaacttataattgagatttaatcagtcttactaccaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-TTGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGAAAGTAATTGTTGCGGTC-GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGAGTAATATCGG--------GAGCAT-GCATACACATATGATTCT--TAAAAGTATATTTGTACATGTACATTTACA--GAAACACTTC-A-TCAAGttgactaagtttgaaaagttacagtaattgt
gi|11 : aaatgcaaaatactgtaacttttcaaattacgtcacagctaaaCTC-GTCATAGCTCTC--A-------AAC-AAAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAG-T-------GTCA-GCAAACAA-AA-GAACCCTTTGAC-GCTGT-CATCGCCAAGT------------GTGGGGAAAGTAATTGTTGCGGTCGT---------------GGAAT--AGCGGGGCTAAGA--TTTTAGTCAGAGTAATCTCGG--------GAGCAT-GCAT--GTATATGGTTTT--TAAAAGTATATT------TGTACATTCACA--GAAACACTTC-A-TCAAGGTCA-
gi|12 : aatgcaaaatactgtaacttttcaaattacgtcagagctaaa---GATTTA-T---AGAATGTCAAATCAG-AAT------GT-G----TATT--AT-AA----CTC-ATTGAC-A-TT----A-----ATA-CGCTGCA-TTTT-T-GTCAAG-AAA----AA--CAAACAATAATAG-TA-ACGTGGCCAATGTGCC--A-AATGCAGG-----TA-C-TCTTACAT-----------------GT-AT-GTAT-ATTTTAT----TTTTAG--C--AAAC-AAGTGGA--AGA-GAA--AAC--TG-GAA-----------T---AAGCA----A-TAAA---C--C-CT----AAA-C--TAAATA--C--T-TG--TAAA-TA-AAAAGGATGTTCAAAAACA--TAGCT-G--TCA-TT-------TTCA--AT-TAT--GACA-----------CA--TGT--T-T
gi|13 : CACAGA---CGACAAA-TTATAA-CATCTG-------------CCC---C----CCCCCACA-------CACACACACA-G-ACACACGCGCGTATTTGTATCCATTCT-GGGT---TA---G-T--T--TATTT-AGCTTTCAAAA--TGC-----TTATT----ACGCATTATT-ACTT-C-TAACTTCAGATTT-TGAGAAG-TATTGCTA---A------TCCC-----ATAACCCCTATATAT-TG------AAA-T--AACAT-TG---TGATTTTGCCTGAGAGCTATAT-GAA-GTACAT-TTTAGATT-CTGCCTAag
gi|14 : tgttatggggaattTAACTCTC--AGTACTCTA-CAGGAGTACG-GC--ATTG-TCTGAGCA-ACTTGAATCC--TTGG-CA--TGG-AGG--TCA-ATACAAAA-AA-CG----TTTGAC-GCT-T-CATCGCTAAG-------------GTTGGAAGTAATT-----------GTC--------------GGTATGAAGCGGG-CTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-ACAT--GTATATGATTTT--TCAAAGTATATT------TGTACATTTACA--GAAA-ACTTt
gi|15 : caaaactgttacttttaaatttactacagctGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT---AAAAGTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAA-CAGA----A---AT-----CATTG-------------------GC-CAGGAAAATTTTT----ATTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TT
gi|16 : gcgGGGGCTAGAAAGTCC-----GGAGTAATCTCGGATTACGTCGAGCATCGCAT--GTATATAATTTT---AAAAGTATATT-------GTACATTTATA--GAAACACTTC-A-TCAAGGTCA-TATG--AA-TTGTAGAATGA-ACTAGAATCAAACCT-CT-A---AAA-CAGA----A---AT-----CATTG-------------------GC-CAGGAAAATTTTT----ATTTACC-TCACCCCCT-CCCACTTTATATATATT-CTCAATGCTAC----GATT-AAATTATCACTGCC-TT
gi|17 : gcgGTTGAG-AAA----A---CAAA-------AG-TG-ACGTGGCCAATG
gi|17 : --TT-TGT--GATG-----------CGTTTG---T-TGTTGTTG--------------------TTTTTAAA-TTT--GGGAA-AT-GGAGTCTC-TCA--ATATTA-TA-TA--A---------AGTAA----T------Aaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgatgcgtttgttgttgttgtttttaaatttgggaaatggagtctctcaatattatataaagtaatag
gi|18 : gttgagaaaacaaaagtgacgtggccaatgaaccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TGGGAGGAGTCA-ACAAACAA-AA-CAACCTTTCGAC-GCTAT-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TTAAAGTATATT------TG---------------A-ACTTC-A-TCAAGGTCA-TATATAAAATTGTA-AATGG-ACTAAAATCAA--CT-CT-A---AAA-TAGAT---T---AT-----g
gi|19 : -CCTAT-ATTG-CTCT-CT-TCA-CAT-G-ATATTTAACCGAC-A--AAT----ATC-AGTTGA---TATAGAGCTAGT----ACACACATACAAT-AGTACGGC-ACTGTTCGTCA-CTGACTTGTTGCCTGGCCTTGCTGCAC-AAGTTTCTC---GAATTTAT----------------AG-AGC------TT-G----TTTT--AA-AC----CTC-AATGAG-ACTG----AT-----T--TGCTGCA-TTTT-TCGTCAAG-AGA----A---
gi|2 : CTC-GTCATAGCT-----------------------AGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGGCAGGTGGGAGGAGTCA-ACAAACAA-AA-CAACCCTTTGAC-GCTGTTCATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTAAGA--TCTT----AGATTAATCTCGG--------G-GCAT-GCAT--GTATATGATTTT--TAAA-GTATAAT------TGTA--TTTACA--GACA-ACTTC-A-TCAAGGTCA-TATATTAA-TTGTA-AATGA-ACTAAAATCAA--CT-CT-A---AAA-TAGAT---TTTAAT------ATTGTTAGGATA-TGATTACTA-GC-CAGGA---TTTTTTTTAATTTG-GGTCATCCC-TCCCCGCT---------TT-CTC-AT-CTAC----GATT-AG---GCCACTGCC-TTACATG----------T----GTCTTGTACGTAATTATAAGATGTGGGTGTGTATTGTAC-AAAATA-TTA-AACATCTCTAAGTAA-TACCTATTCATAGCAT-TAAGAATGAAAATTTACTTTTAACGGATCCTGCG-TACATATA---AGACAAA-TCAACT-CGGACGTTCA--------TCTC---TGGATACCGCACA-------CAAACACGCA-C-GCACAAAGGCGTATTTATACTCGTTCT-GATT---TACTAG-TAGT--TATTT-AGCTTTCAAAA--CGC-----TTAATTAATACGTATTCTT-ACTTAT-TAACTTGAGATTT-TAATCAGTTCTTACTACCAA------TAAT-----CT---CTCTCTCTCTCTG------ATATT--AACAT-TG---CGAGTTTACCTGAGCAATG-ATTGGATGT-TATGTTTAGATG-CTGCCTACTAATATTATACGCTTTATAATTGATCTTTTTTTGCA-TACTCTCT-CTCT-C--TCTCCTTGAAAT----CTGTTT-AGC-AAT-AT-T-ATAATATTTGAAT-AATTC-AGTTTAACCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAC-A--CAT----G-C-A---------------CTA-C----GC-CAC------T-AGCACGGC-ACTGTT-GTTA-CTGA-------------------GCACGGAGTTTCTC---GATTTAAT---AGAACGTAGAATCAG-AGC------GT-A----TTTT--AA-AA----TTC-ACGGAG-ACTT----GTAGC-ATA-TTCTGCA-TTTT-ATGTTGAG-AAA----A---CAAA-------AG-TG-ACGTGGCCAATGCACC--T-GATGCAGG-----TA-C-TGTT---------------------GT-AT-GTAT-A----AA----TTCAAGATC--AA---GAGCCGG--ATA-TAT--TAT--GG-GAA-----------T---AGGCG----A-TAAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCA-TT-------TTAA--TT-TGT--GATG-----------CGTTTGT--T-TGTTGTTG--------------------TTT---AATTTTTCGGTAA-AT-GGAGTCTCTTTA--ATATCA-TA-TA--A---------AGTAA-----------AAA-GG--CATTCTTA-----A-CA-T----TG-T--AAGA-A------------ATG---TTG-ATC-A-A---C--A-GCTTGT----TA--T-TT-AC-TATTCC--A-AGACCGC---AA--CAA--T-TACTTTC-----------CCA--------------CA-CT-TA-GCAATGAC--AGCG--TCAAAGG-G---TTG-----T---TTTG-TTTT----ATGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCACGAC-C--AAT----GAGC-G-CTT-ACTCTCG-TGT----GAG-AGCTA--TG-ACGAGTTTTAGCTG
gi|20 : GATGACGGAGCG--TCGAAGGCG---TGG-----T---TTTT-GTTG----TTGA-TGT-----AATCCAAAAACCGGAGTCTG---CAACGT--A----A----GAGATAT----CAAAGT---TGCTCA-GAC-C--AAT----GAGCGG-CTCAACTCT
gi|21 : ctatttgcgaatttgtgttaaaacttttgcgaattagcaccaaattgcaagcgttttcaatacgttccaa-CT-TC-GCGATGAC--AGCG--TCAAAGG-G---TTGCACAGT---TTTG-TTTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---GAGAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGC-G-CTT-ACTC-CG-TGT----GAG-AGCTA--TG-ACGAG-TTTAGCTGa
gi|22 : tagatgcaaaatactgtaacttttcaaattacatcaCATAGA---AGACAAA-TCAAAA-GAGCTGTTTACATCCCCTTCTC---C----CCCGCACA-------CAAACA--------------CGCGCATTTATAT-------------------------T--TATTT-AGC-TTCAAA--------------------ACGCATTATT-ACTTAC-TAACTGAAGATTT-TGATAAGT
gi|23 : aatgctattgggaaaagtcgtttgaggaattCTCCCA----------CTG---A--C-C--A----AT---GGGAT-T----CAA-GT---TGCTCA-TAC-C--AAA----GAGC-G-CTT-AC-CTCA-TTA----GAA-ACGTA--TG-AAAAG-TTTAGCC
gi|24 : tatagGAC--AGCG--TCGAAGC-G---CGG-----T---TTCG-TGTG----TTGA-C-T-----CCTCCCA----------ATG---A--C-C--A----AG---GATAT-T----CAA-GT---TGCTCA-GAC-C--AAT----GAGT-G-CTT-AC-CTCG-TTT----GAG-ACCTG--TG-CAAAG-TTTAGCCGatgatgtacatgtaacttgaaaagttacagcacattgcaat
gi|25 : cattaTGCGAC--C-GATGCAGG-----TA-C-TGTTACATCATGGCATCATTGGCATGT-ATCGTAT-A----GT----TTCAAGATC--AA---GA-------------T--TAT--GG-GAA-----------T---AGGCGACTTA-CAAA---C--C-CT----AAA-C-TTACAC-------CTG--TAAA-TA-A-----------AA
gi|26 : GAAAT----CTGTTT-AGC-AAT-AT-T-AGAATATTTAGAT-AATTCCAGTTGA--CTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CATTATAG-CTAG-T-A---T------TTA-C----ATACAG------T-AGCAAGGC-
gi|27 : ATTAA-TTGAG-AATGA-ACTAGAATCAA--CT-CCCA---AAA-TAGATGCGC---ATG----CGTT-T-AC-ATAATTATCATTG----TAGGA-------------TTTA-G-TCGCCCCCTCCCCGCT---------TT-CTC-AT-CTAC----GA
gi|28 : -TAGT--TATTT-AGCTTTCAAAA--CTC-----TTAAT----ACGCATTCTC-AATTAT-CAACCTGAGATTTAAAATTAGTTCCTACTA---A------TGCT-----CT---CTCTCTCTCTCT
gi|29 : TCTATCTG------AAATC--AATAT-GG---CAATTTTACCCTAGCGAT---T---ATGT-TATGTCTAGATT-CCGCC----AAT----TATGCTTCAGAGTGG-------TTTGCAGTATTTTctctc
gi|3 : tcgGATTT-TAATCAGTTCTTACTA---A------T-----------------CTCTCTCTG------AAATT--AACAT-TG---CGAGTT----------ATG----GGATGT-TATGTTTAGATG-CTGCCTACCAATATTATACGCTTTATAATTGATCTTTTTT-GCAATACTCTCT-CTCT-CTCTCTC-------T----CTCCTT-G----AT-AT-T-AGAATGTTTGAAT-AATTC-AGTTTA-CCTAT-ATTG-CTTT-CT-TCA-CAT-G-CAATTTATCCCAT-A--CAT----A-T-AGCT-AGTAT------TTA-CATAAGCACAG------T-AGCACAGC-ACTGTTTGTTA-CTGA-------------------GAACGA-GTTTCTC---GATTTAAT---AGAACGTAGAACCAG-AGC------GT-A----TTTT--AA-AA----TTC-ACGGAG-ACTT----ATAGC-ATA-TGCTGCA-TTTT-ATGTTGAG-AAA----A---CAAA-------AG-TG-ATGTGGCCAATGCATC--T-GATGCAGG-----CA-C-TGTT---------------------AC-AT-GTAT-GT---AATATTTTC-AGATCCTAAATTGAGTCGG--ATA-TGTA-TAT--AGCGAA-----------TAAGAAGCGC---ATTAAA---CGTCGCT----ACA-CATTAGTCA--C--CTTG--TAAATTATA-----------GACAATA--CAGCT-AACTCA-TT-------TTTA--TT-TGT--GATG------------ATTTGTTGT-TGTTGTTT--------------------TTT---AA-CATTTGGT---AT-GCATTCATTAAA--AGATCATTA-TAATA---------AGTTA----TATATTCAGA-GGGTCATATTTATTATGA-TA-T----TG-T---AGA-G------------ATG---ATG-GTC-ACG---CTGA-TTTTTT----TACCT-TT-TC-T-TTCC--ACCGACTGC---TA---AA--TCTACTTCCTTCACAATGGGCCAGTCGCGGTGTTGAATA-CTTTG-GCGATGCC--ACCG--TCAAGGG-----------------------TTG----TTGA-C-T-----CCTCCCA----------CTG---C--C-C--A----AT---CAGAT-T----CAA-GT---TGCTCA-GAC-C--AATAAGCGAGC-G-CTC-AC-CTCG-TTT----GAG-ACGTA--TG-AAAAG-CTTGGCCG
gi|31 : CGGT-ACTGTTTGGTA-TTGA-------------------GCACGAA-------------TTA----------------TCAG-AGC------GC-G----TTTT--AA-AA----CTC-ATTGAG-ACTT-------GC---A-TGCTGTA-TTTT-TCGTCAAG-tgacagaactcgaaaagttacagcattttgcatttag
gi|32 : gtgTTTG-G-TCACCCCCTCCCCGCT---------TT-CTC-AT-CAAC----GATT-AG---GCCACTGCC-TTACATGTACATGTATAT----GTCTTGTACGTAATTA
gi|33 : TT--AA-AA----GTC-ATGAAG-ACT-------A---ATA-TGCTGCA-ATTT-TCGTTGAG-AAA----AACACAAT-------AG-TG-ACGTGGCAAATGCCCC--T-GATG
gi|35 : TCTCTG------AAATT--AACAT-TG---CGATTGTGCCTGAGCGATG-AT---ATGC---TGCTTGGCTT-CTGCCTAT--------TACGCTTTA
gi|38 : a---TA---G-TAAT--TATTT-AGCTTTCAAAA--CGC-----TTAAT----ACGCATc
gi|39 : tac-G-TCACCCCCTCCCCGCT---------AT-CTC-AT-CTAC----GATT-AG---GC
gi|4 : CTCCCTGCTCTACGCTCTCCTTGATATATTCCTGTTT-AGCCAATGAT-TCATAATAATTGAAG-AATTCCAGTT-A-CCTAT-ATTGTCTTT-CT-TCAACTT-GACA---TAGTCCAC-AACCAT----G-C-A---------------CTA-C----G-ACTC------TTAGCACGGCCACTGTTTGTTAGCTGA-------------------GCACGAGGTTTCTCCCCGATTTAAT---AGACCGTAGAATCAGAAGCCGCAGAGT-ATCGCTTTT--AACGATATTTTCAACGGAGCACTTTATGATAGCTGTATTGCTGCA-TTTTATTGTTGAG-GAAAACCA---CAAA-------AGTTG-AC-TGCCAAATGCACCCTC-GATGCAAGGACTCTA-CTTGTT---------------------GTCATGGTAT-A----AA----TTCACGATC--AA---GAGCCGGCCATA-TATCATAT--GG-GAATCACTACGCTGT---AGGGC----A-TCAA---C--C-CCCCTAACACC-TTACACA--GCTTCTGGTCAAACTA-A-----------TAACATAGCCAGTTAG--TCA-TTCCTTATATCAACTTT-TGTACAGTG-----------CGCGACT--T-TGTTGTTGCATCTGCATGTGATGAGCGTTTT---AA-TTTTCTGTAAGAT-G--GTCTCTTCAACATACCA-TATTA--AGATGTCAGTAGTAATTTTT------AAA-GG--C-TTTTTA-----A-CG-TCATCTG-TGAAAGATACACC--------ATG---TTG-ATC-A-ATCCT--ACGC-TGT----TA-----T-AC-TATTCCAAA-GAACCGCCTGAACTCAA----TACTATT-----------CCA--------------CAGCT-TAGGCGATGAC--AGCAGTTCAAAGG-GATTCTG-----TCTATTTG-TTTGCCATTCGA-C-TCTCTGCCCTCCA----------CTGGCCC--C-C--ACCACATTCGAAGAT-TCTAACAA-GT---GGCTCATGACGCTAAAT----GAGC-GCCTT-ACTC-CG-TGTCCCCGTG-ATCCAGTTG-ACGAG-
gi|41 : GTTGAG-AAA----A---CAAA-------AG-TG-ACGTGGCCAAcatactgacgatttcagct
gi|5 : tCTC-TCCATAGCTCTTCAA-------A-C-AAAGTAAGTG-TCATTGGTCTGAGCA-ACTTGAATCTCATTGG-CAG-TTGGAGGAGTCA-ACAAACAA-AAACAACCCTTTGAT-GCTGT-CATCGCCAAGTTTCAACGCGACTGTGGGAAA----------------GTAATTGTTGCGGTCGTGGAAG--AGCGGGGCTAAGAG-TC------GGAGTAATCTCAG--------GAGCAT-GCAT--GTATATGATTTT--TAAAAGTA-ATT------TGTACATTTACA--GAAATACTTC-A-TCAAGGTCA-TAT--TAA-TTGTG-AATGA-ACTACAATCAA--CT-CT-A---AAAATAGAT---T---AT-----CATTGT-AGGATACTGAT-ACTA-GC-CAGGAAAATTTTA----ATTTG-G-TC-------CACCGCT---------TT-CTC-AT-CTAT----GATTTAG---GCCACTGCCCTTACATG----------TATATGTCTTGTACGTAATTATAAGATGTTGGTGTGTATTGTACAAAAATATTTATAACATCTCTAAGTAA-TACCTATTCAT------TAGGA-TGAAA-TTTACTT---ACAAAT-------TA-ATAGATTTAG-CGGA-TC-----CTGC-GTACA--------TCTC---C----ACCGCACA-------C---------------CAAGCGCGTATTTATACTCATTCT-GATTTACTA---G-TAGT--TATTT-AGCTTTCAAAAATGGC-----TTAAT----ACGCATTCTT-ACTTATACAACTTGAGATTT-TAATCAGTTCTT-CTA---ATGCCTCTCCT-----CT---CTCTCTCTCTCTG------AAATT--AACATGCGAATCGAGTTTACCTGAGCGATG-ATGGGATGT-TATGTTTAGATTACTGCCTACT-ATATTATGCGCTTTATAATTGATC---TTTTGCAATACTCTCT-
gi|6 : aaatgcaaaatgctgtaactttcaaaattacgtcacagctaaa-----T---TTTG-TTTG----TTGA-C-T-----CCT--CA-----------TG---A--C-C--A----AT---GGGGT-T----AAA--------------AC-C--AAT----GAGG-G-TTT-AC-CTTG-TTC----GAG-GCCTG--TG-AACAG-TTAAGCCGtc
gi|6 : cattgcataatggtgtaacttgtcaagttattca--------GAGCAT-CGAT--GTATGTAATTT------AAATTTCTT------TTTTTTTCTATATTGAAACACTTC-A-CTGTGGTCA-TATG--AA-TTGT------------GAATCAA--CTACT-GTTTGCA-T--AT---T---AT-----TATTGT-AGGATACACATTACTA-GCTTAAGACA--TTTT----CTTTT-A-T-ACCCCC------CT---------TT-CTC-AT-----------------------CTGCC-CTA--------------T----GTCATATGCGTAATTACAAAA------TGTGTATTGTAC-AAAATA-TAT-AACA--------TAACT---CGTTC---GC----AGGA-TGAAGTTTTACTTgagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|6 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttCATAGA---AGACAAA-TCAAAA-CAGCTGTTCA--------TCTC---C----ACCGCACAAAACACCCAGACATACA-G-ACAAAAACTCGTATTTATATTCATTCTAGAT-----------TAGG--TATTT-AGCTTTCAAAA--TAC-----TAAAT----ACACGCTCGT-ATTTAT-TAAATTGAGA--------------TTACTA---A------TGCTTCCCCCT---CTCTCCTTCTCTGTACTCAAAATTAAAACAT-TG---CGATTTTGCCTGAGGGACA-AT-G--TGC---TGTTTAGATT-CTGGT------TATTATACACTTTATAATCGTTCacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattcatagaagacaaatcaaaacagctgttcatctccaccgcacaaaacacccagacatacagacaaaaactcgtatttatattcattctagattaggtatttagctttcaaaatactaaatacacgctcgtatttattaaattgagattactaatgcttccccctctctccttctctgtactcaaaattaaaacattgcgattttgcctgagggacaatgtgctgtttagattctggttattatacactttataatcgttcgc
gi|7 : cattgcataatggtgtaacttgtcaagttattcacggcttaactgttcacaggcctcgaacaaggtaaaccctcattggttttaaccccattggtcatgaggagtcaacaaacaaaagagaagatatttcattccagtacaattcattgttccattatatatgcaaaagacatacagaccacatggctcgtttgagcatcgatgtatgtaatttaaatttctttttttttctatattgaaacacttcactgtggtcatatgaattgtgaatcaactactgtttgcatattattattgtaggatacacattactagcttaagacattttcttttatacccccctttctcatctgccctatgtcatatgcgtaattacaaaatgtgtattgtacaaaatatataacataactcgttcgcaggatgaagttttacttacaaattgcttactgtactatctatataatatctatatatttgctattcgtgtggatcctgcgtatttatagtggacattgcaaacgggtaaagtttatgttttgagcaattATTAGAATTAATTC-AGTTTA-CCTAT----G-CTTT-CTGTCA-CATTG-CA-TTTATCTCAT-A--CAT----G-C-A---------------CTA-C----G-ACAC------T-TACACGGC-ACTGTTT--TA-CTGA-------------------GCACGA-GTTTCTT---GATTTAAT---AGAACGTAGAATCAG-AGC------GTTA----TTTTTAAA-AA----TTC-ACGG-G-ACTT----ATAGC-CTA-TGCTGCAATTTT-ATGTTGAG-AAA----A---CAAA-------AG-TGGACGTGGCCAATGCACC--TTGATGCAGG-----TA-C-TGTT---------------------GT-AT-GTATAA----AA----TTCAAGATC--AA---GAATC-G--ATATTAT--TAT---G-GAA-----------T---AGACG----A--AAA---C--C-CT----ACA-C-TTACACAG-G--TCTG--TAAA-TA-A-----------AAAAATA--CAGTT-G--TCATTT-------TTAA--TT-TGT--GATG-----------CGTTTG---T-TGTTGCTGTT------------------TTT---AA-TTTTTGGTAA-AT-GGAGTCTCTC----ATATCA-TA-TA--A---------AGTAA----T------AAA--G--CATTTTT------A-TA-G----TGCT--AAGA-A------------ATG---TTG-ATTAA-A---C--A-ACTTGT----TA--T-TTAAC-TATTCC--A-CAACCGCA--AA--CAA--T-TACTTTC-----------CCA--------------CACCT-TA-GCGATGACA-AGCG--TCAAAGG-G---TTG-----T---TTTG-TTCA----TTGACC-T-----CCTCCCA----------CTT---G--C-C--A----AT---GAGA--T----CAA-GTGGCTGCTCA-GAC-C--AAT----GAGC-G-CTT-ACT-TCGTTGT----GA--AGCTA--TG-ACGAG-TTTAGgc
gi|8 : CTC-GTCATAGCTCTC--AC------A-C-GGAGTAAGCGCTCATTGGTCTGAGCA-ACTTGAATCTCATTGGAC-G-TGGGAGGAGTCA-A-AAACAA-AA-CA-CCCTTTGAC-GCTGC-CATCGCTAAGT------------GTGGGAAA----------------GT---------------GGAAT--AGCGGGGCTATGA--TCT-----AGATTAATCTCGG--------GAGCAT-GCAT--GTATATGATTTT--TAAAAGTATATT------TGTACATTTACA--GAAA-ACTTC-AATCAAGGTCACTATATTAA-TTGTA-A-TGA-ACTAAAATCA---CT-CT-A---AAA-T------------------CATTGT-AGGATACTGATTACTA-GC-CAGGAGTTTTTTTTTA-ATTTG-G-TCACCCCCTCCCCGCT---------TTACTCCAT-CTAC----GATT-AG---GCCACTGCC-TTACTTG----------T----GTCTTGTACGTAATTATATGATGTCGGTGTGTATTGTAC-AAAATA-TTA-AACATCTatgtgataatttgaaaagtacagattttgcatc
gi|9 : atgcaaaatactgtaacttttcaaattaagtcacagctaaaGTTTTT---------------------TTT---AA-CTT-CGTTAA-AT-ACAATCTAT-CA--ATAT-A-CA-T--------------GGAA----T------AAA-GG--CATTTCCA-----T-TA-T----CA-C--AAGA-AACTTATTTAGATACG---TTG-ATC-A-A---C--A-GC
gi|9 : atttgggAGTGTCCATTGGCCTGAGCA-TCTTGAATCGCAATGGTCAG-TGAGAGGAGTCA-ACGAACAA-AA-CTACGCT---AC-G-TGT-C-TCGggttcctttttcatgaacatgatgagacttggcttgtacgttctaattgtacaatagtcgctgaaacaattcactgaagcttttctacagaaggcacgagacacgtagcgtagttttgttcgttgactcctctcactgaccattgcgattcaagatgctcaggccaatggacactcttaacggtttcgttgtaaagtaacttgaaaaggtacacaattttgcaatg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): GTATATTTATAGTGGGCATTACGATTGGGAAAAGTTTAAGTTTTTAAGAACATCAAAACAGTTATTTACACACACACACACACACACACAC
Unaligned ( gi|34 ): CCAATGAACACTCACCTACTTTGACAGTTATTAGAGTTAATCCGTGATGTGACTTGAAAAGTTACACCATTTTACAA
Unaligned ( gi|36 ): AAAGACCTATGAAAAGTTTAGCTGTGACTAACTTGAAAAGTTACGACATTGCAATG
Unaligned ( gi|37 ): ATAAGATATATATATTTGCGGATCCTGCGTATTTATAGTAGACAT
Unaligned ( gi|40 ): TTCATTACTAGATGCAAAATACTGTAACTTTTC