lowQualScore : 111111111111 111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222222222222222 111111111111111111111111111111111111111111111
lowQualScore : 444444444444 1 55 55555 2 5555 1 5555555555 1 222 4 111111 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66666666666666666666666666 4 1 1 333 3333 1 0000000000000000000000000 1 1 555 33 11 222 1 888888888888888888888888888 222 33 1 222222222 33333 1 1 222 1 333333333333333333333333333333333333333333333 222 111 1111 666666666666666666666666666666666666666666 1111 44444444 1 222 6666666666666666 11111 1 222222 444444444444444444 8888888888 1111 22222 11 77777777777777777777777777777777777777 44 1 2222 99999999999999
lowQualScore : 6 6 888888888888 7 55 00000 4 0 2222 5 6 7777777777 5 999 6 0 666666 2 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 22222222222222222222222222 6 0 6 6 0 3 3 888 2222 3 0000000000000000000000000 6 5 7 3 888 77 7 88 6 333 1 3 333333333333333333333333333 555 00 7 2 777777777 77777 0 0 111 3 777777777777777777777777777777777777777777777 222 000 4 5 5555 5 555555555555555555555555555555555555555555 77 2222 44444444 1 5 5 0 888 5 2 7777777777777777 99999 1 0 6 9 0 222222 3 555555555555555555 6 1 6666666666 77 7777 8 99999 33 3 44444444444444444444444444444444444444 66 6 6 8888 88888888888888
lowQualScore : . . ............ . .. ..... . . .... . . .......... . ... . . ...... . . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . .......................... . . . . . . . ... .... . ......................... . . . . ... .. . .. . ... . . ........................... ... .. . . ......... ..... . . ... . ............................................. ... ... . . .... . .......................................... .. .... ........ . . . . ... . . ................ ..... . . . . . ...... . .................. . . .......... .. .... . ..... .. . ...................................... .. . . .... ..............
lowQualScore : 0 0 000000000000 0 00 00000 0 0 0000 0 0 0000000000 0 000 0 0 000000 5 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 77777777777777777777777777 0 7 0 0 0 3 3 000 0000 3 0000000000000000000000000 0 0 3 3 777 00 3 33 0 000 0 3 333333333333333333333333333 000 00 3 3 333333333 77777 0 0 333 3 777777777777777777777777777777777777777777777 999 666 4 7 4444 7 000000000000000000000000000000000000000000 99 1111 66666666 8 2 0 1 888 0 7 0000000000000000 00000 8 8 4 6 8 888888 0 222222222222222222 7 7 3333333333 99 3333 0 00000 88 5 22222222222222222222222222222222222222 00 0 0 5555 00000000000000
consensus : NNNGAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATCCGGTCAGCCGATGNTCTTAAGTTGCGAAATGTC-ATCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGA--T---TTANTCCTACACGAAGAGTAGCAAATATTCTG---------TTTACT--TGA-TA-------TTTT------------T----------CGA-----GGGAAATTATTTCACACATAATAAACTG----G---------------AC------T------TTTG---GGTACGCN-CGA--GG-TCCNCG----TGCTTTA-TNAATCAACTGCTTGC-----A-ATAC----TCGGTTA----CG---GCCGCA--CGT----------C------AGCCGACCTT----C-----TACG------------------A--ATGCATTT--GCTTAAAAGTT------TATTTTTGTAAAATAATTA-ATGATCGACCACACAATCA--CCTNTG---C-------------AT---------TTT-------------AGAAATA-TTTACTAAAATCC-NTATTTTTN--G-GC-ATA-ATGTCGA-------GT-CG--AGCT-AG----GAC--AC--TTTTTATTTN-GAGA--ATGG-AGTTTAATTCGGT--AATTTT-AGTTT---G-A-AAATCGGGA-TACAT--G-------TAACGATTATCGCTGCT-ANCAAATAGTGGAT-ATTGTTAT-TTT--TGGTAGAGATTTAA-AAAAATG--G-CATT------TGG-AA--AAT-AATGAT-AATGTGG-TGTTA---C-ATTA-CGGCATCTAAAATGC-AGGGGGTGGGAGCGTTCCGGGAACAC-AAAA-------ATGCAC-AAGTGGAA-GCAAGTAATAG--AGGATGGGAGGGAGAGGGGGGGGGTGCCTAT--TTTTTNAT-TTTACAAC-GCAGACTTAAGTTCAAGGTTTTTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCANNTGGGTTTTT-----TTTAAATGTTAAGTATTTAATATGGTTG-TAA-TT-TATCAAAA-A-GTTAGAATAAACAGGATTCATA-TTCTAATTGTTGCATGGAACAAACAGTCCTATCACAAACGTCTCTTTGCTATC-GCGCCGAC-C-CAATA--TATT--CACACCTTN--CTACCAGT-CAGA-AC-----CTTGTGGCG----------AACCC-G-GGTCGC-TGACCACC--A-CTAGGTTCTATT-G-T-GCGAAA-GA-CCTT-TTGAATTT-GCA--T-AG---AATATAC---AAG-CT-ATCT--TTTGTCT--TATTTCAACAC--GAA--ATCCGAT-AA---C-CAAAC------CA------AA------AC-TG--GCA--TTT--T-AGTGCT--ATCG----TTTTT-CAAAA--TGGGGGTAAAA-CCTC---GTAAAA-TGCGCNNTTAATTCATC-AT-TATAG-AAC-GGTTTTAAAAATATATATTTTAT-T-TCCGTT-----CATT-A------ACACT-TGTTATC--AT---TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGNC-TTTTT--TNTTT--A-TTA---TTTT-----A-TTT-AATT---------TGAGACGCA-TTGAA-ATAATGACAGTGCAGT----ATAATGTA--ATCAA
Reference ( gi|1 ) : TATGGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGTAAACCGATAAAC-CTTTTCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTTACT--TGA-TA-------TTTT------------T----------TG------GGGAAATTATTTTACGCATAGTAAACTG----G--------------TAC------T------TTCG---GGTACGCAACGA--GGATCCGCG----TTCTTTA-TCAATCAACTGCTTTC-----A-ATA-----TCGGTTA----CG---GTCGCA--CGT----------C------AGCCGACCTT----CT----TACA------------------AACATGCATTT--GCTTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCA--CCTGTG---C-------------AT---------TTT-------------AGAAATA-TTTATTAAAATTC-ATATTTTTG--G-GC-ATA-ATGTCGA-------GTACG--AGCT-AG----GGC--AT--TTTTTATTTGTGAGA--TTGACAGTT--ATTCGGTTAAATTTTGAGTTT---GCA-AAATCGGGACTATATTAAA------TAACGATTATTGTTGCTGATTAAGTAG-GGATGATTGTTAT-TTTGGTGGTCGAGATTTAATAAAAATG--GCCATTTTCATATAAGAAGAAATAAATGATAAATGTGG-TGTTA---A-ATTATCGGCATA-AAAATGC-AGGGAGTGGGAGTGTTCCGGGAACAC-AATA-------ATGCAC-AA-TGGAAGGCAAGTATTAG--AAGTTGGGGGGGGGGGGGGGGGGGGGGTTGTGGTTGTTAATGTTTACAA--TCAGAGTTG---TCAAGTTTTTACTTAGAGATTAATTTATGAGAACA--GA-ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTTAAATGTTAGGCATTTGATACGGTTGCTAA-TT-TATCAAAA-ATGTTACAA-AAACAGGATTCATA-TT-------------------------CCTACCACAAACGTCGCTTTGCTATC-GTGCCGACGCGCAATA-ATATT--CACACTTTT--CTACTAGT-CAGA-ACG----CTTGTGGTG----------AACCC-G-GGTCGCCTGACTACC--A-CTAGGTTCTATT-G-T-GCGAAA-GA-CCTTGTTGAATTT-GCA--T-AGGA-AATATAT-CAAAG-CTCATCTATTTTATCT-ATATATCAACACA-GAA--GTCTGAT-AA---C-CAAAC------CA------AA------AC-TG--GTA--TTT--T-AGTGCT--ATCG----TTTTT-CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTTTAATTCATCTATATATAG-AAC-GATTTTATAAATACATATTTCAT-T-TCCATT-----CATT-A------ACACT-TGTTATC-CATAAGTATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TCTTT--TATTT--A-TTA---TTT------A-TTTGAATT---------TGAGACGCGCTTGAATATAGTAAGAG-GCAATGATAACAATATAACATCAAG
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTC
gi|23 : tgCTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTC-ATCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTT
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTTACT--TGAATA-------TTAA------------TCAGTCAAAAATGAT----GGAAAATTATTTTAC-CATAGTAAACTG--------------------AC------T------T--G---GGTACGCA-CGA--G-ATCCGCG----AGCTTTA-TCAATCAACTGCTTTCTGAGTA-ATAC----TCGGTTAGGTCCGCCCGTGGCAGCCGA----------CCCCGAGAGCCGACCTCAAACCTAAACTACATGCACATGTGTATATTGCAACATGC-TTT---CTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCA--CCTGTG---C-------------ATTTTTTAAAATTT-------------AGAAATA-TTT-CTAAAATCT-ATATTTTT---G-GC-ATA-ATGTCGA-------GT-CG--AGCT-AGTCCTGAC---C--TTTTTATTTG-GAGA--ATG--AGTG--TTTCGGT--AATTTTGAGTTT---G-A-AAATCGGGA-TACAT----------TAACGATTATTGCTGCT-ATT-AGTA---GAT-ATTGTTAT-TTT--TCGCAGAGA-TTAA-AAGAATG--G-CATTTT-ATATAGGAA-AAAT-AATGAT-AATGTGG-TGTTACGTACATTA-CGGCATCTAAAATGC-AGGGAGTGGGAGTGTTCC-GGAACACAAATATGCACCTATGCAC-AA-TGG-AGGCGAGTA------AA------------AGGAGGGGGGTGCCTAT--T--TTAA--TTTACAACNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN-ATTGTTCGTTCA-AGCAAGT-GGTTTTT-----TTT-AATGTTAAGTATTTAATATGGTTG-TAATTT-TATCAAAA-A-GTTAGAATAAACAGGATTCATATTT-------------------------CCTATCACAAACGTCTCTTTGCTATC-GTACCGAC-C-CAATATAT-TT--CACACCTTA--CTACCAGT-CAAA-AC-----CTTGT-GTG----------AACCC-GAGGTCG-CTGACCACC--A-TTA-GTTCTATT-GTT-GCGATA-GA-
gi|6 : TTAATTCTATACGAAGAGTAGCATATATTCTGT--------TTTACA--TGT-TAAGCTGAATTTTAATCAGTCAAGAT----------CGAATTACGGGAAATTATTTCACA-ATAATAAACTA----GCTGACTTGGACAACTAC------TAATTTCTTTT---GGTACACT-TGA--AG-TCCTCT----TGCTTTA-TAAATCAACTGCTTGC-----ATACATGTACTTGGTTA----CG---GCCGCA--CGTGCACATGATGC------AGCCGA-GTT----C------ACA--------------------------------CCTAA--------------TTTTGTAAAAT-ATT--ATGTTCGACCACATAATCA--CCTTTG---C-------------ATCG-------TTTTTTTTTAAATTTAAGAAATA-CTT-CTAAAATCCTTTATTCTTGTTG-GC-ATA-A
gi|5 : gAAT---------------TTCCCTATTGA-TA-------TTTT------------T-----------G------GGGAAAGTAG---AGCCAT--TGAACT-------------------------------------TTG---GGTACA-AACGATAGAAGTCTCGATTCTTCCTTAATCAATCAACTGCT
gi|8 : ------GGAAAATTATCTCACA-ATAATAAACTGACTTG--------------GACAACAAAT------TTCTATTGGAACGCA-CGA--GG-TCTGCG----TGCTTTA-TCATTCCTCTGCTT-A-----A-ATAC----TCGGCTT----CG---GTCGCA--CGT------------------GC--ACCTT-----------------------------------AT---TTT--G--TAAAA---------TATTACT--------ATTG-ATG-------ACACAATCA--CCTGTGGGTCAATTTTTTTTTAAAT---------TTT-------------AGAAATA-TTTA-TAAAATCC-TTATTTTTT--T-GC-ATA-ATGcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|17 : caattctattttacacgtttagctgaatagtactcattcaagaattatC------T------TTTG---G-TACACT-TGA--AG-TCCTCT----TGCTTTA-TAAATCAACTGCTTGC-----ATACATGTACTTGGTTA----CG---GCCGCA--CGT----------
gi|15 : acttggacaactactaattt---GGAACGCG-CAA--GG-TCCACG----TGCTTTA-TAGATCAACTTCTT-A-----A-ATAA----TCGTTTT----TTT--GTCGCA--CGT------------------GCC----------------TATG------------------A---TGGA-----GCT---GAGTTCACACCTAATTTTGTAGAATA-TTA--TGATCGACAACACAATCA--CCTTTG---C-------------Agcacatgatgcagccga
gi|13 : tttCAACTGCTTGC-----A--TAC----TCGGTTA----CG---GCTGCA--CGT------------------GC------------------ACA------------------TG-ATGCAGCTGAGCTCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATA-TAATTCTTAT-------------------T---------TTT-------------TGGCATA-GTAATGAAAACTC-A
gi|5 : AAAGTT-------GTTTT-GGAAAGTA-TTATATGA-------CACCGTC---CCTCTG---C-------------AT---------TTT-------------AGAATTAATTTTTCAAAAATC-ATATTTTTG--GCACGATAGATGTCGATGTCAACGTATGTTAGCT-GA----GGC--ACAATTTTTACTTTTGAGA--T-----GT--------ATTGAATCTT--GTTTCAAGCACAAATTGGAAGAATGTTTGAGTACTGTAATGA-TATTGTTGCT-ATT-AGTActcaaaaaacattaccccaaaaattgaaagccga
gi|19 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---------TTT-------------AGAAATA-TTT-CTAAAATCC-ATATTTTTA--G--C-ATA-ATGTCGA-------GT-CG--AGCT-AG----AAC--A---TTTTTATTTG-GAGA--ATGGGAGTC--TTTCGGT--AAT------------------ATCGGGA-TACATTAA
gi|7 : GAAATA-TTTAT-AAAATCC-TTATTTTTT--T-GC-ATA-ATGACGA-------
gi|3 : -ATA-ATATC-----------ATC--AGCTGAG----GTC--AT--GTTT-ATTTTGGAGAATTTGG--GTTTAATTTAGT--AATTTT-----T---G-A-AAACCGGGGATACATAAGT------TATCGAT----ATTGC-----AAATAG-GGAT-ATTGTTAT-TTT-TTGATAGAGATTT--T--AAATG------T-------TGACAATCAAT-AATGAT-AATGTGGTTGTTA---C-ATTTACGGCATC-TAAATGC-AAGGGGT-------TT--GGGA--------A-------ATGCAC-AAGTGGAA--CAAGTAATAG---GGATGGGAGaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|10 : gttt-ATA-ATGTCGA-------GT-CG--AGCT-AC----GGCCAAG--TTTAT-TTTG-GAGA--ATAAGAGTTTAATTCGGT---------AATTT---G-A-AAATCGGGA-TACAT----------TAATGCTTATCGCTAGTCAGCAAATAGTGGAT-ATTGTTATATTT--TGATAGAGATTAAAtgacctgtttattcatttacaacctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|7 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-ATA-ATGTCAA-------AT-CG--AGCT-AG----GAC--A---TTATTATTTTGGAGG--ATGATAATTTAATTCGG-TACATGT--AATCT---A-A-AAATCGGGA-TACAT----------TAATGAGTATCGCTAGTTAGCAAATAGTGGATAATatattgac
gi|25 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattTTAT-TTT--TGGTAGAGATTTA--AAAAATGCTGACATT--------------AAT-AATGAT-AATATTG-TGTTA---C-ATTA-CGGCATCTAAAGCGC-AGAGGGTGGGAgtaa
gi|20 : AATGTGG-TGTTA---C-ATTA-CGGCATC-TAAATGC-AAGGGGTGGGA-------------------A-------ATGCAC-AAGTGGAA-ACAAGTAATAG---GGATGGGGtg
gi|27 : atATGTGG-TTCTA---GTATTA-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAAC-AAAT-------AT-CAC-AAATGGAGTGCAAGTAtgaccttttattcaatttacaacct
gi|32 : aatcCGGCATCTAAAATGC-AGGGAGTGGGAGCGga
gi|16 : tgTTCCGG-AACAC-AAAT-------ATGCACCAA-TGCA---CAACT--CAGGCAAGTTGAAAGGGAGAGGGGGG------CT----TTTTTTAT-TTTACAA--GCAGACTTAAGTTCAAGGTTTTTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTC
gi|3 : TTATTCATTTACA--ACCTG---TTTTAAAAATTGAAATTTAAAGCATTTAGTATGGTTG-TAA-TT-TGTCTCCATACGTTA-AA-AAACAGGATTCATA-TTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAATA--TATTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAGC-TGAC--CCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCTGG-GAATTTTGCA--TTAGAATAATTTATACACAGTCTCGT-------------------GACAT--GAA--ATCCAATTAA---C-CAAACAAACTGCAGGGGGAAA------ACCTG--GCA--T---------GCT--ATCG----TT----------------ATCAAA-CT-----GTAAA--TACACCT--AATTCAT--ATTCATAA-AAT-GGTTTTTTAAAAATATATTT------TCCATTTATAACATA-A------ACACT-TGTTAT---AT-----TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACCCTTTTTT--TCTTTAAA-TCA---TTTTC----A-TTT
gi|29 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtGGTTTTT------TTA--TGTTAAGTATATAATATGGTTG-TAA-TTCTATCAAAA-G-GTTAGAATAAACAGGATTCATA-
gi|4 : ATAACCGTCTCTT--CTATC-GTGTCGAC-C-CAATA--TATT--CACACCTTC--TTACTAGT-CAGA--C-----CTTGTGTTG----------AACCC-T-GGTCGC-TG-CTACC--AACTAG-TTCTATT---T-GCGAAAAGA-CCTTTTTGATATT-GCAATT-AG---AATATAC---AAG-CT-ATCT--TTTGTCTTATTTTTCAAC-CA-CAACCGTCTGA--AA---CACAAAC------CA---------------C-TG---TAATTTT--T-AGTGCT--ATCGGGATTTTTT-CAAA---TGGG-ATAAAAGCCTCTGGATAAAA-TGCGCT---GAATCATCAATATATAG-AAC-GATT--AAAAATACATATTT-ATAT-TTCGTT-----CATT-A------ACACTCTGT-ATCACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGAC-TTCTT--TATTTC-A-TGT---TCT------A-TTT-AATT---------TGAGACGCA-TTGAATA
gi|11 : tattcgttcga-GA-CCTT-TTGAATTT-GCA--T-AG---AATATAC---AAG-TT-ATCT--TTTGTCT-TAATTTCAACACT---A--GTCTAAT-A----T-CAAAC-------A------AA------AC-TG--GCA--TTTCAT-AGTGC---ATCG----TTTTT-TTCAAAATGGGGAT-AAA-CCTC---GGAAAAATGCGCAGT-AATTCATC-AT-TATAG-AAA-GATTTTAAAAATGTATATTTTAT-T-TCCGTT-----CATTAA------ATACT-TGTT----CAT---T-TTAATTCCAATTTGTTGATCA--ACAataatggtataat
gi|26 : TATCTCAACATG-AAA--ATC-GAT-AA---C-CAATC------CA------AA-------C-TGCAG-A--CTG--T-CATGCT--ATCG----TTTTT-C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tt
gi|12 : TCAACAT--GAA--ATTCGAT-AT---C-CAAAT------CA------AACAGCAGAC-TG--ACA--TTT-----ATGCTGCATCA----GTTTT-CAAT---TTTGGGTTAA---------GTAAAA-TACACTATT---TCATA-AT-CATAGCAATAGGTTTTA---ATATAT-TTTCAT-TCTCCGTT------ATT-ACAGGTAACACT-TGTTAT--------TATTAACTCCAATTCGTTGATCA--TCAAcca
gi|21 : tcACATGAA--ATTCGAT-AT---C-CAAAT------CA------AACAACAGAC-TG--ACA--TTT--T-AGTGCT--ATCG----GTTTT-C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--CTAATTCAcatt
gi|9 : -GAA--TTCTGAT-AATAAC-CAAAC------TGC-----AG------AT-TC--GCA--TTT--TTAGTGCT--ATCT----TTTTTTCAATA--TGGGGGTAAAA-CCTCT--GTAAAA-TGCACCC--AGTTC-------TGTAA---------TTAAAAATG-ATATTCTGT-T-TCCGT------------------ACACT-TGTCATC-----A--ACTCATTCCAATTATTTGATCA--ACATTCTAT-CACT--TATTTGCTTTTT--A-TTA---CTTTAAATCA-TTTTCATT---------TGAGACGCA-TTAAA-ATAATGA-AG-GCAGT----ATAATGTA--ATCAA
gi|30 : catcttAAAGTGGGGGTAAAA-CCTCA--GTAAAA-TACTCATTT--TTCAat
gi|31 : tcCT-TGTTATC-------TTTTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAGaaaatgtattttcttttcgt
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGA--ACTTT--CATTT--ACTTATATTTT------ACTTTAAATTACTTCTATCTGAGACGCA-TTGAAAATAATAACAGTGTAAT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TACGGTATCTACAATACAGGTGGTGAGAAGACAAGTAATAGGGAGGGGGTGACCTTTTTTTTCAATTTACAACCTGTTCAAGTAAGTTTGAAAATTTTCAAAGCATTTAGTATAGTTGTAATTGTCTCCATACGTTAGAAAAAAACAACAGGATTCATA
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111 1111111111111111111111111
lowQualScore : 3333333 11 55555 11 3333 1 2 2 3333333333333333333333333333333 444444 555555555555555 1 1 222222222222222222222222222222222222 11 99999999999999999999999999999999 1111 1111 11111 44444444444444 111 1111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 6666666666666666666666666666666666666 22 1 222222222 1 1111 2 1 222222 444444444444444 1111 3333 1 1111 1 11 111 1 11111111111111 1 111111 222222222222222 222 1 2222222222222222222222222222222 11 22222222222 111 22222 111 1 1 33333333 11 11 33333 11 11111 11 1111111 8888888888888888888888888 1 1 2 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 111 1111 1111111 4444444444444444 1111 22222 1 222 44444444444444444444444444444444 22222222222222222 44444444444 1111 111 1111 11 111 222222 11 444444444 1 1111 222222222222222 22
lowQualScore : 3333333 3 3 4 88 0 00000 11 44 3333 3 77 5 0 2 4 0 1111111111111111111111111111111 111111 1 6 0 444444444444444 3 0 999999999999999999999999999999999999 3 1 88 22 00000000000000000000000000000000 3333 88 66 2222 5 1 44444 1 00000000000000 0 5 000 2222 77 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 5555555 0 0 1 5555555555555555555555555555555555555 77 22 66 77 2 777 4 5 5 222222222 1 5 2222 66 0 1 66 5 0 888888 99 77 888888888888888 2222 999 8888 6 3 3 0000 0 8 8 11 8 0 0 8 1 777 0 11111111111111 0 6 6 777777 6 5 5 444444444444444 4 6 2 888 0 6666666666666666666666666666666 3 3 88 99999999999 777 55555 777 3 3 22222222 6 00 22 11 55555 9 0 11 8 8 66666 0 1 11 9999999 0000000000000000000000000 3 0 2 0 0 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 000 2222 5 5 5 5 5 4444444 6666666666666666 66 1 7777 66 00000 4 66 1 7 2 4 555 4 4 44444444444444444444444444444444 1 2 5 5 5 99999999999999999 5 7 99999999999 66 0000 6 444 3333 11 1 444 3 3 8 333333 99 000000000 0 4444 666666666666666 77
lowQualScore : ....... . . . .. . ..... .. .. .... . .. . . . . . ............................... ...... . . . ............... . . .................................... . . .. .. ................................ .... .. .. .... . . ..... . .............. . . ... .... .. ..................................................................................... . ....... . . . ..................................... .. .. .. .. . ... . . . ......... . . .... .. . . .. . . ...... .. .. ............... .... ... .... . . . .... . . . .. . . . . . ... . .............. . . . ...... . . . ............... . . . ... . ............................... . . .. ........... ... ..... ... . . ........ . .. .. .. ..... . . .. . . ..... . . .. ....... ......................... . . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. ... .... . . . . . ....... ................ .. . .... .. ..... . .. . . . . ... . . ................................ . . . . . ................. . . ........... .. .... . ... .... .. . ... . . . ...... .. ......... . .... ............... ..
lowQualScore : 5555555 0 0 0 55 7 77777 77 77 5555 0 00 5 0 5 0 0 0000000000000000000000000000000 888888 0 7 7 333333333333333 3 0 888888888888888888888888888888888888 8 4 66 66 00000000000000000000000000000000 6666 33 77 1111 7 0 33333 0 99999999999999 7 7 000 1111 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 1111111 7 7 0 8888888888888888888888888888888888888 99 33 77 99 1 000 0 0 7 999999999 4 7 1111 00 9 4 77 7 1 333333 99 99 444444444444444 1111 444 0000 3 2 3 5555 6 0 0 00 0 8 8 0 2 222 0 00000000000000 0 7 7 777777 7 7 0 666666666666666 0 3 5 333 6 7777777777777777777777777777777 7 3 88 00000000000 555 00000 555 3 3 33333333 7 33 00 22 00000 2 8 00 0 0 88888 6 4 66 6666666 7777777777777777777777777 2 0 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 000 7777 7 7 7 0 0 6666666 2222222222222222 99 4 0000 99 66666 4 11 0 4 0 4 666 4 2 44444444444444444444444444444444 4 3 0 7 7 33333333333333333 7 1 11111111111 99 8888 7 333 0000 00 0 000 8 8 0 000000 00 000000000 0 2222 888888888888888 55
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAG----------TCGAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TCCGCG-----TGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACG---GCC----GCA--CGT--------GC--ACCTT---------CT-ACG-A--TGCAT---------TT--GC-----------TTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-ACA-TTTTTA-TTT-GG-AGAAT--G-G-AGTTTAATTCGGT--AATTTT-AG------TTTG-AAAA----TCGGG-A-TACAT----TAACGATTATCGCT-GCT-ANCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA-AAAA--NTGG-CATTTT-----GGGA--AAAT-AATGAT-AATGTGG-TGTTA-C----A-TTA-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAANATGCACAAATGGAA-GCAAGTAATAGAGGNTGGGAGNGAGAGGGGGGGGGTG-CCTGT--TTNTTCAA-TTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTTAAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TA--TCAAAAN-GTTAGAATA----AACAGGATTCATATT------------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-T-ATCT--CAAC-AC-GAA-GTCCGA-TAAC-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT-C--AAANTGGGGGTAAAA-CCTC---GT-AAAATGCGCC--TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CATT-A------ACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTT-T--TT--TATTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGTGCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATCCGGTCAGCCGATGNTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAATTT-ATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGA--T---TTANTCCTACACGAAGAGTAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TT------------TCGA-------GGGAAATTATTTCACACATAATAAACT---------G-----G-AC-------------TTT---TGGGTACGCN-CGA----GG-TCCNCG-----TGCTTTATNAATCAACTGCTT-----GCA-----ATACTCG-GTTACG---GCC----GCA--CGTC------AGCCGACCTT---------CT-ACGAA--TGCAT---------TT--GC-----------TTAAAAGTT------TATTTTTGTAAAATAATTA-ATGATCGACCACACAATCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TNGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-ACACTTTTTA-TTT-NG-AGAAT--G-G-AGTTTAATTCGGT--AATTTT-AG------TTTG-AAAA----TCGGG-A-TACAT---GTAACGATTATCGCT-GCT-ANCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA-AAAA--ATGG-CATTT-------GGA--AAAT-AATGAT-AATGTGG-TGTTA-C----A-TTA-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAAAATGCACAAGTGGAA-GCAAGTAATAGAGGATGGGAGGGAGAGGGGGGGGGTG-CCTAT--TTTTTNAT-TTTACAACGCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCANNTGGGTTTTT-----TTTAAATGTT--AAGTATTTAATATGGTTG-TAA-TT-TA--TCAAAAA-GTTAGAATA----AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCCTATCACAAACGTCTCTTTGCTAT-CGCGCCGAC-C-CAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-T-ATTT--CAAC-AC-GAA-ATCCGA-TAAC-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT-C--AAAATGGGGGTAAAA-CCTC---GT-AAAATGCGCNNTTAATTCATC-A-T-T-ATAG-AAC-GG--TTTTAAAAATATATATTT-TATT-TCCGTT-----CATT-A------ACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGN-CTT-T--TT--TNTTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATGACAGTGCAGT----ATAATGTA--ATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT------------TTG--------GGGAAATTATTTTACGCATAGTAAACT---------G-----GTAC-------------TTT---CGGGTACGCAACGA----GGATCCGCG-----TTCTTTATCAATCAACTGCTT-----TCA-----ATA-TCG-GTTACG---GTC----GCA--CGTC------AGCCGACCTT---------CTTACAAACATGCAT---------TT--GC-----------TTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCACCTGTG---C-------------AT--TTT-------------AGAAATA--TTTATTAAAATTC-ATATTTT--TGGGC---ATA-ATGTCGA-GTACG---------AGCT-A-G----G-GCATTTTTTA-TTTGTG-AGATT--G-ACAGTT--ATTCGGTTAAATTTTGAG------TTTGCAAAA----TCGGG-ACTATATTAAATAACGATTATTGTT-GCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAA--ATGGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGG-TGTTA-A----A-TTATCGGCATA-AAAATGCAGGGAGTGGGAGT-GTTCCGGGAACACAATAATGCACAA-TGGAAGGCAAGTATTAGAAGTTGGGGGGGGGGGGGGGGGGGGG-GTTGTGGTTGTTAATGTTTACAAT-CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA--ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTTAAATGTT--AGGCATTTGATACGGTTGCTAA-TT-TA--TCAAAAATGTTACAA-A----AACAGGATTCATAT-------------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTAT-ATAT--CAAC-ACAGAA-GTCTGA-TAAC-CAAAC------CA-----AA------A--CTG--GTATTT--T-AGTGCT--ATCG----TTTTT-CAAAAAATGGGGATTAAA-CCTC---GT-AAAATGCGCTTTTAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATT-----CATT-A------ACACT-TGTTATCCATAAG--TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TC-T--TT--TATTT---ATTA-TTT-A------TTTG-AATT---------TGAGACGCGCTTG-AATATAGTAAGAG-GCAATGATAACAATATAACATCAA
gi|10 : tat---ATA-ATGTCGA-GT-CG---------AGCT-ACG----G-CCAAGTTTAT-TTT-GG-AGAAT--AAG-AGTTTAATTCGGT--AATTT-------------G-AAAA----TCGGG-A-TACAT----TAATGCTTATCGCTAGTC-AGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTAA-AAg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-T-A-GTCTAA-T-AT-CAAA-------CA-----AA------A--CTG--GCATTTCAT-AGTGC---ATCGTT--TTTTT-C--AAAATGGGGAT-AAA-CCTC---GGAAAAATGCGCAG-TAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTT-----CATTAA------ATACT-TGT--T-CAT-----T-TTAATTCCAATTTGTTGATCA--ACAtattgac
gi|12 : TCT--CAAC-AT-GAA-ATTCGA-TATC-CAAAT------CA-----AACAGCAGA--CTG--ACATTT-----ATGCTGCATCA----GTTTT-C--AATTTTGGGTTAA----------GT-AAAATACACTATT---TCATA-A-T-C-ATAGCAATAGG--TTTTAA---TATAT-TTT-CATTCTCCGTT------ATT-ACAGGTAACACT-TGTTAT---------TATTAACTCCAATTCGTTGATCA--TCAAtt
gi|13 : CAACTGCTT-----GCA------TACTCG-GTTACG---GCT----GCA--CGT--------GC--AC---------------ATG-A--TGCAG---------CTGAGC-----------TCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATAcatt
gi|14 : AGGGAGGGGGTGACCTTT--TTTTTCAA-TTTACAAC-----CT---GTTCAAGTAAGTTTGAAAATTTTCA---Ataattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgagaagacaagtaatAAATTTTCAAAGCATTTAGTATAGTTG-TAA-TTGTC--TCCATAC-GTTAGAAAAAAACAACAGGATTCATAagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaagtttgaTT---TGGA-ACGCG-CAA----GG-TCCACG-----TGCTTTATAGATCAACTTCTT-----A-A-----ATAATCGTTTTTTT---GTC----GCA--CGT--------GC----------------CT-ATG-A--TGGA--------------GC-----------T---GAGTTCACACCTAATTTTGTAGAAT-ATT--ATGATCGACAACACAATCACCTTTG---C-------------A
gi|16 : TTCCGG-AACACAAATATGCACCAATGCA---CAACTCAGGCAAGTTGAAAGGGAGAGGGGGG-------CT----TTTTTTAT-TTTACAA-GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTC
gi|17 : C-------------TTT---TGG-TACACT-TGA----AG-TCCTCT-----TGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACG---GCC----GCA--CGT
gi|19 : acttggacaactactaattt--TTT-------------AGAAATA--TTT-CTAAAATCC-ATATTTT--TAG-C---ATA-ATGTCGA-GT-CG---------AGCT-A-G----A-ACA-TTTTTA-TTT-GG-AGAATG-G-G-AGTCT--TTCGGT--AAT--------------------A----TCGGG-A-TACAT----TAAgcacatgatgcagccga
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAG----------TCAAAAATGATGGAAAATTATTTTAC-CATAGTAAACT---------G-------AC-------------TT-----GGGTACGCA-CGA----GA-TCCGCG-----AGCTTTATCAATCAACTGCTTTCTGAGTA-----ATACTCG-GTTAGGTCCGCCCGTGGCAGCCGACCCCGAGAGCCGACCTCAAACCTAAACT-AC--A--TGCACATGTGTATATT--GCAACATGCTTTCTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCACCTGTG---C-------------AT--TTTTTAAAATTT----AGAAATA--TTT-CTAAAATCT-ATATTTT--T-GGC---ATA-ATGTCGA-GT-CG---------AGCT-A-GTCCTG-AC-CTTTTTA-TTT-GG-AGAAT--G---AGTGT--TTCGGT--AATTTTGAG------TTTG-AAAA----TCGGG-A-TACAT----TAACGATTATTGCT-GCT-AT----TAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGATT-AA-AAGA--ATGG-CATTTTATATAGGAA--AAAT-AATGAT-AATGTGG-TGTTA-CGTACA-TTA-CGGCATCTAAAATGCAGGGAGTGGGAGT-GTTCCGG-AACACAAATATGCACCTATG-----CA--CAATGGAGGC---GAGTAAAAGGAGGGGGGTG-CCTAT--TTT---AA-TTTACAACNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNN-NNNN-NNNNNN-NNNNNNNATTGTTCGTTCA-AGCAAGTGG-TTTTT-----TTTAA-TGTT--AAGTATTTAATATGGTTG-TAATTT-TA--TCAAAAA-GTTAGAATA----AACAGGATTCATATT------------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-
gi|20 : AT-AATGTGG-TGTTA-C----A-TTA-CGGCATCT-AAATGCAAGGGGTGGG-------------------AAATGCACAAGTGGAA-ACAAGTAATAG-GGAT---------------GGGGTGACCT-T--TTATTCAA-TTTACAAC
gi|21 : AC-AT-GAA-ATTCGA-TATC-CAAAT------CA-----AACAACAGA--CTG--ACATTT--T-AGTGCT--ATCG----GTTTT-C--AATTTGGGGTTAAAA-CCTCA--GT-AAAATACACC--TAATTCAct
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGAACTT-TCATT--TACTT---AT-ATTTT-A------CTTTAAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAACAGTGTAAT----
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAATTT-ATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTAA-AAAATGCTGA-CATT--------------AAT-AATGAT-AATATTG-TGTTA-C----A-TTA-CGGCATCTAAAGCGCAGAGGGTGGGA
gi|26 : -T-ATCT--CAAC-AT-GAA-AATCGA-TAAC-CAATC------CA-----AA---------CTGCAG-ACTG--T-CATGCT--ATCG----TTTTT-C--AAAGTGGGGGTAAAA-CATCA--GT-AAAAtg
gi|27 : AT-CATGTGG-TTCTAGT----A-TTA-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAACAAATAT-CACAAATGGAGTGCAAGTAcca
gi|29 : aGGTTTTT-----TT---ATGTT--AAGTATATAATATGGTTG-TAA-TTCTA--TCAAAAG-GTTAGAATA----AACAGGATTCATAga
gi|3 : ---ATA-ATATCA---T-C----------AGCTGA-G----G-TCA-TGTTTA-TTT-TGGAGAATTTG-G--GTTTAATTTAGT--AATTTT-----------TG-AAAA----CCGGGGA-TACAT-----AA--GTTATCGAT-ATT--GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTTA-AATG--TTGA-CAATC-------------AAT-AATGAT-AATGTGGTTGTTA-C----ATTTA-CGGCATCT-AAATGCAAGGGGT--------TT--GGG-------AAATGCACAAGTGGAA--CAAGTAATAG-GGATGGGAGTGA--------------CCTGT--TTATTCA--TTTACAAC
gi|3 : gtttTTATTCATTTACA--ACCTG---TTTTAAAAATTGAAATTTA--AAGCATTTAGTATGGTTG-TAA-TT-TGTCTCCATAC-GTTAAA--A----AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-C-GT-----GAC-AT-GAA-ATCCAATTAAC-CAAACAAACTGCAGGGGGAA------AACCTG--GCA---------TGCT--ATCG-----TTAT-C--AAA--------------CT----GT--AAATACACC--TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACATA-A------ACACT-TGTTAT--AT-------TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACC-CTT-T--TT--TTCTTTAAATCATTTTCA------TTT--ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT-C--AAAGTGGGGGTAAAA-CCTCA--GT-AAAATAC------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGTTAT-C-T-----T-TTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAG
gi|32 : TG-CGGCATCTAAAATGCAGGGAGTGGGAGC-G
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-T-ATTTTTCAACCAC-AACCGTCTGA--AACACAAAC------CA----------------CTG--TAATTT--TTAGTGCT--ATCGGGATTTTTT-C--AAA-TGGGA-TAAAAGCCTCTGGAT-AAAATGCGCTG--AAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTT-----CATT-A------ACACTCTGT-AT-CACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGA-CTT-C--TT--TATTT---CATGTTCT-A------TTT--AATT---------TGAGACGCA-TTG--A-ATAAT---AATG--GT----ATAAT
gi|5 : tattcgttcgaTTGA-TA-------TT--TT------------T--G-------GGGAAAGTAG---AGCCAT-------T---------G-----A-AC-------------TTT----GGGTACAAA-CGATAGAAG-TC-TCGATTCTTCCTTAATCAATCAACTGCT
gi|5 : aatttccctaAAAGTT------G--TTTTGGAAAGTA-TTATATGA-------CACCGTC-CCTCTG---C-------------AT--TTT-------------AGAATTAATTTTTCAAAAAT-C-ATATTTT--T-GGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAATTTTTACTTT-TG-AG-AT--G-T-A-TTGAATCTTGT----TTCA-AGCACAAATTGG-AAGAATGTTTGAG---TAC-T---GTAATGA-TATTGTT-GCT-ATTAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTG-----G-ACAACTACTAATTTCTTT---TGG-TACACT-TGA----AG-TCCTCT-----TGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACG---GCC----GCA--CGT--------GC--AC---------------ATG-A--TGCA--------------GC-----------C---GAGTTCACACCTAATTTTGTAAAAT-ATT--ATGTTCGACCACATAATCACCTTTG---C-------------ATCGTTTTTTTTTAAATTTAAGAAATA--CTT-CTAAAATCCTTTATTCTTGTTGGC---ATA-Agta
gi|7 : gGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGACGA-
gi|7 : ---ATA-ATGTCAA-AT-CG---------AGCT-A-G----G-ACA-TTATTATTTT-GG-AGGAT--G-ATAATTTAATTCGGT--ACATGT-AA------TCTA-AAAA----TCGGG-A-TACAT----TAATGAGTATCGCTAGTT-AGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt-------GGAAAATTATCTCACA-ATAATAAACT---------GACTTGG-ACAACAAA-------TTTCTATTGGAACGCA-CGA----GG-TCTGCG-----TGCTTTATCATTCCTCTGCTT-----A-A-----ATACTCG-GCTTCG---GTC----GCA--CGT--------GC--ACCTT----------------------AT---------T------------------------------------TTGTAAAAT-ATTA-CT-ATTGATGACACAATCACCTGTGGGTCAATTTTTTTTTAAAT--TTT-------------AGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattatA-TAAC-CAAAC------TGC----AG------A--TTC--GCATTT--TTAGTGCT--ATCT----TTTTTTC--AATATGGGGGTAAAA-CCTCT--GT-AAAATGCACCC--AGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT------------------ACACT-TGTCAT-CA-------ACTCATTCCAATTATTTGATCA--ACATTCTAT-CA---CTTAT--TTGCTTTTT---ATTACTTT-AAATCATTTT--CATT---------TGAGACGCA-TTA-AA-ATAATGA-AG-GCAGT----ATAATGTA--ATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 11111111111111 111111111111111111111111111
lowQualScore : 3333333 11 33333 11 2222 1 1 1 333333 555555555555555 1 1 222222222222222222222222222222222222 11 99999999999999999999999999999999 1111 1111 111 44444444444444 22222222222222222222222222222222222222222222222 2222222 6666666666666666666666666666666666666 22 222222222 1 1111 1 333333 1 333333333 1111 1 1111 1 11 111 00000000000000 1 111111 111111111111 222 1 33333333333333 1111 22222222222 111 22222 111 1 1 33333333 11 33333 11 11 1 111 222222 111111111111111111111111111 1 1 1 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 1111 1111 555555555555555555555555 1111 11111 11 222 111111 222222222222222222222 3333333333333333 44444444444444 1111 111 11 111 111 222222 11 444444444 1 1111 444444444444 11
lowQualScore : 3333333 1 1 1 88 33333 44 4444 1 22 5 5 1 1 5 222222 6 444444444444444 3 0 333333333333333333333333333333333333 0 1 99 0 00000000000000000000000000000000 3333 88 66 2222 5 5 000 0 0 00000000000000 0 5 66 44444444444444444444444444444444444444444444444 1 5555555 0 0 1 5555555555555555555555555555555555555 77 22 66 77 8 777 4 5 5 222222222 1 5 2222 66 555 5 7 5 222222 1 99 999999999 6 6 4444 6 6 3333 0 8 8 11 8 0 0 8 4 222 8 33333333333333 0 6 6 777777 5 5 0 999999999999 6 3 7 2 888 0 11 1 1 88888888888888 7777 1 666 88888888888 777 55555 777 3 3 22222222 6 7 11 00000 11 66 11 8 6 8 999 1 1 888888 000000000000000000000000000 3 0 0 9 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 8 6 2222 5 5 666 5 2222 5 111111111111111111111111 66 1 7777 66 33333 00 66 1 1 0 66 555 4 555555 0 0 555555555555555555555 2 5 5 5 4444444444444444 5 11111111111111 66 0000 6 111 11 444 444 3 3 8 333333 99 000000000 0 4444 333333333333 88
lowQualScore : ....... . . . .. ..... .. .... . .. . . . . . ...... . ............... . . .................................... . . .. . ................................ .... .. .. .... . . ... . . .............. . . .. ............................................... . ....... . . . ..................................... .. .. .. .. . ... . . . ......... . . .... .. ... . . . ...... . .. ......... . . .... . . .... . . . .. . . . . . ... . .............. . . . ...... . . . ............ . . . . ... . .. . . .............. .... . ... ........... ... ..... ... . . ........ . . .. ..... .. .. .. . . . ... . . ...... ........................... . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. . . .... . . ... . .... . ........................ .. . .... .. ..... .. .. . . . .. ... . ...... . . ..................... . . . . ................ . .............. .. .... . ... .. ... ... . . . ...... .. ......... . .... ............ ..
lowQualScore : 5555555 0 0 0 55 33333 77 0000 0 00 5 0 0 0 5 888888 7 333333333333333 3 0 888888888888888888888888888888888888 8 4 66 8 00000000000000000000000000000000 6666 33 33 1111 7 7 000 7 7 99999999999999 7 7 99 77777777777777777777777777777777777777777777777 3 1111111 7 7 0 8888888888888888888888888888888888888 99 33 77 99 4 000 0 0 7 999999999 4 7 1111 00 999 7 1 7 222222 3 22 888888888 7 7 2222 4 0 0000 6 0 0 00 0 8 8 0 4 000 0 00000000000000 0 7 7 777777 7 7 1 999999999999 7 3 2 5 333 6 88 7 0 22222222222222 7777 0 888 88888888888 555 00000 555 3 3 33333333 7 3 22 22222 00 44 00 0 0 0 666 4 0 666666 777777777777777777777777777 2 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 0 7 0000 7 0 222 0 4444 0 888888888888888888888888 99 4 0000 99 88888 66 11 0 1 9 22 666 4 888888 1 1 111111111111111111111 3 0 7 7 3333333333333333 7 77777777777777 99 8888 7 111 00 000 000 8 8 0 000000 00 000000000 0 2222 000000000000 00
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--AC-TT-C--ACGA---TGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTA-TTTTG-GAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTT-AGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA-AANAT--TGA-CATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-GCAAGTAATAGAGGNTGGGAGTGAGAGGGGGGGGG-G-CCTGT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAAGG-GCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCTT-CT-ACGA---TGCATTT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTA-TTT-G-GAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCT-GCT-ANCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA-AAAAN--TGG-CATTTT-------GGGAAAAT-AATGAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAANATGCACAAATGGAA-GCAAGTAATAGAGGNTGGGAGNGAGAGGGGGGGGGTG-CCTGT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAANGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAAAGTGCAGT----ATAATGTAACATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT--TT----------G--------GGGAAATTATTTTACGCATAGTAAACT---------G-----GTAC-------------TTT---CGGGTACGCAACGA----GGATC-CG---CGTTCTTTATCAATCAACTGCTT-----TCA-----ATA-TCG-GTTACGGTCGCACGTCAGCCGACCTT-CTTACAAACATGCATTT--GCTTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCACCTGTG---C-------------AT--TTT-------------AGAAATA--TTTATTAAAATTC-ATATTTT--TGGGC---ATA-ATGTCGA-GTACG---------AGCT-A-G----G-GC-ATTTTTTA-TTT-GTGAGATT--G-ACAGTT--ATTCGGTTAAATTTTGAGTTTGCAAAATCGGG-ACTATATTAAATAACGATTATTGTT-GCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAAA--TGGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGGT-GTTA-A----ATT-ATCGGCATA-AAAATGCAGGGAGTGGGAGT-GTTCCGGGAACACAATAATGCAC-AATGGAAGGCAAGTATTAGAAGTTGGGGGGGGGGGGGGGGGGGGG-GTTGTGGTTGTTAATGTTTACAAT-CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA--ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTT--AAATGTT--AGGCATTTGATACGGTTGCTAATT-T-ATCA-AAAATGTTACAA-A----AACAGGATTCAT------A-T------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTATA-TAT--CAAC-ACAGAA-GTCTGA-TAA---C-CAAAC------CA-----AA------A--CTG--GTATTT--T-AGTGCT--ATCG----TTTTT--CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTT-TAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATT-----CAT------T-AACACT-TGTTATCCATAAG--TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TCT--TTTA---TTT---ATTA-TTT-A------TTTG-AATT---------TGAGACGCGCTTG-AATATAGTAAGAGGCAATGATAACAATATAACATCAA
gi|10 : tat---ATA-ATGTCGA-GT-CG---------AGCT-ACG----G-CC-A-AGTTTA-TTTTG-GAGAAT--AAG-AGTTTAATTCGGT--AATTT-------G-AAAATCGGG-A-TACAT----TAATGCTTATCGCTAGTC-AGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTAA-AATAT--TGA-Cg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-TA--GTCTAA-TA----T-CAAAC-------A-----AA------A--CTG--GCATTTCAT-AGTGC---ATCG----TTTTTTTC--AAAATGGGGATAAA--CCTC---GGAAAAATGCGC--AGTAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTT-----CAT------TAAATACT-TGT--T-CAT-----T-TTAATTCCAATTTGTTGATCA--ACA
gi|12 : -TCT--CAAC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAGCAGA--CTG--ACATTT-----ATGCTGCATCA----GTTTT--C--AATTTTGGGTTAA----------GTAAAA-TACA---C-TATTTCATA-A-T-C-ATAGCAATAGG--TTTT---AATATAT-TTT-CATTCTCCGTT------ATTACAGGT-AACACT-TGTT----AT-----TATTAACTCCAATTCGTTGATCA--TCAAtt
gi|13 : CAACTGCTT-----GCA------TACTCG-GTTACGGCTGCACGT--GC--AC-------ATGA---TGCAGCTGAGCTCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATAcatt
gi|14 : AGTAATAGGGAGGGGGTGACCTTT--TTTTTCA-ATTTACAAC-----CT---GTTCAAGTAAGTTTGAAAATTTTCA---Ataattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgagaagacaG----TTTGAAAATTTTCAAAGCATTTAGTATAGTTG-TAATTGT-CTC--CATACGTTAGAAAAAAACAACAGGATTCAT------Aagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaaTT---TGGA-ACGCG-CAA----GG-TC-CA---CGTGCTTTATAGATCAACTTCTT-----A-A-----ATAATCGTTTTTTTGTCGCACGT--GC--------CT-ATGA---TGGA-----GCT---GAGTTCACACCTAATTTTGTAGAAT-ATT--ATGATCGACAACACAATCACCTTTG---C-------------A
gi|16 : TTCCGG-AACACAAATATGCACCAATGCA---CAACTCAGGCAAGTTGAAAGGGAGAGGGGGG-------CT----TTTTTTA-TTTTACAA-GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTC
gi|17 : C-------------TTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--AC-------ATGA---TGCA
gi|19 : acttggacaactactaattt--TTT-------------AGAAATA--TTT-CTAAAATCC-ATATTTT--T-AGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----A-AC-A-TTTTTA-TTT-G-GAGAATG-G-G-AGTCT--TTCGGT--AAT--------------ATCGGG-A-TACAT----TAAgccga
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAGTC----------AAAAATGATGGAAAATTATTTTAC-CATAGTAAACT---------G-------AC-------------TT-----GGGTACGCA-CGA----GA-TC-CG---CGAGCTTTATCAATCAACTGCTTTCTGAGTA-----ATACTCG-GTTAGGTCCGCCCGT--G
gi|2 : CACATGT--GT--ATATTGCA-AC-A---TGC-TTT---CTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCACCTGTG---C-------------AT--TTTTTAAAATTT----AGAAATA--TTT-CTAAAATCT-ATATTTT--T-GGC---ATA-ATGTCGA-GT-CG---------AGCT-A-GTCCTG-AC-C-TTTTTA-TTT-G-GAGAAT--G---AGTGT--TTCGGT--AATTTTGAGTTTG-AAAATCGGG-A-TACAT----TAACGATTATTGCT-GCT-AT----TAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGATT-AA-AAGAA--TGG-CATTTTATATA--GGAAAAAT-AATGAT-AATGTGGT-GTTA-CGTACATT-A-CGGCATCTAAAATGCAGGGAGTGGGAGT-GTTCCGG-AACACAAATATGCACCTATG-----CA--CAATGGAGGC---GAGTAAAAGGAGGGGGGTG-CCTAT--TTT---A-ATTTACAACNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNN-NNNN-NNNNNN-NNNNNNNATTGTTCGTTCA-AGCAAGTGG-TTTTT-----TTT--AA-TGTT--AAGTATTTAATATGGTTG-TAATT-TTATC--AAAAAGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-gcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtttttggaaaatattatgatcgaccacacagtcacctgtgcattttttaaaatttagaaatatttctaaaatctatatttttggcataatgtcgagtcgagctagtcctgacctttttatttggagaatgagtgtttcggtaattttgagtttgaaaatcgggatacattaacgattattgctgctattagtagatattgttatttttcgcagagattaaaagaatggcattttatataggaaaaataatgataatgtggtgttacgtacattacggcatctaaaatgcagggagtgggagtgttccggaacacaaatatgcacctatgcacaatggaggcgagtaaaaggaggggggtgcctattttaatttacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttcgttcaagcaagtggttttttttaatgttaagtatttaatatggttgtaattttatcaaaaagttagaataaacaggattcatatttcctatcacaaacgtctctttgctatcgtaccgacccaatatatttcacaccttactaccagtcaaaaccttgtgtgaacccgaggtcgctgaccaccattagttctattgttgcgataga
gi|20 : ctgcgatttactctacacgaagaataacaaatattctgatttacacgtttacttgaatattaatcagtcaaaaatgatggaaaattattttaccatagtaaactgacttgggtacgcacgagatccgcgagctttatcaatcaactgctttctgagtaatactcggttaggtccgcccgtggcagccgaccccgagagccgacctcaaacctaaactacatgAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCT-AAATGCAAGGGGTGGG-------------------AAATGCACAAGTGGAA-ACAAGTAATAG-GGATGGG-GTGA--------------CCT-T--TTATTCA-ATTTACAAC
gi|21 : AC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAACAGA--CTG--ACATTT--T-AGTGCT--ATCG----GTTTT--C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--C-TAATTCAct
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGAACTTTCATTTA---CTT---AT-ATTTT-A------CTTTAAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAA----CAGT----GTAAT
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTAA-AAAATGCTGA-CATT--------------AAT-AATGAT-AATATTGT-GTTA-C----ATT-A-CGGCATCTAAAGCGCAGAGGGTGGGA
gi|26 : -TA-TCT--CAAC-AT-GAA-AATCGA-TAA---C-CAATC------CA-----AA---------CTGCAG-ACTG--T-CATGCT--ATCG----TTTTT--C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tg
gi|27 : AT-CATGTGGT-TCTAGT----ATT-A-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAACAAATAT-CACAAATGGAGTGCAAGTAcca
gi|29 : aGGTTTTT------TT--A--TGTT--AAGTATATAATATGGTTG-TAATTCT-ATC--AAAAGGTTAGAATA----AACAGGATTCAT------Aga
gi|3 : ---ATA-ATATCA---T-C----------AGCTGA-G----G-TC-A-TGTTTA-TTTTG-GAGAATTTG-G--GTTTAATTTAGT--AATTTT-----TG-AAAACCGGGGA-TACAT-----AA--GTTATCGAT-ATT--GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTTA-AATGT--TGA-CAATC-------------AAT-AATGAT-AATGTGGTTGTTA-C----ATTTA-CGGCATCTAAA-TGCAAGGGGT--------TT--GGGAA-------ATGCACAAGTGGAA--CAAGTAATAG-GGATGGGAGTGA--------------CCTGT--TTATTC--ATTTACAAC
gi|3 : gtttTTATTCATTTACAACC--TG---TTTTAAAAATTG--AAATTTA--AAGCATTTAGTATGGTTG-TAATT-T-GTCTCCATACGTTAAAA------AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-CG-T-----GAC-AT-GAA-ATCCAATTAA---C-CAAACAAACTGCAGGGGGAA------AACCTG--GCA---------TGCT--ATCG-----TTAT--C--AAACT----GT---------------AAA-TACAC--C-TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACAT------A-AACACT-TGTTAT--AT-------TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACC-CTTT--TTTT---CTTTAAATCATTTTCA------TTT--ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT--C--AAAGTGGGGGTAAAA-CCTCA--GTAAAA-TAC-------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGTTAT-C-T-----T-TTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAG
gi|32 : T-G-CGGCATCTAAAATGCAGGGAGTGGGAGC-G
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TTTTTCAACCAC-AACCGTCTGA--AA---CACAAAC------CA----------------CTG--TAATTT--TTAGTGCT--ATCGGGATTTTTT--C--AAAT--GGGATAAAAGCCTCTGGATAAAA-TGCGC--T-GAAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTT-----CAT------T-AACACTCTGT-AT-CACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGA-CTTC--TTTA---TTT---CATGTTCT-A------TTT--AATT---------TGAGACGCA-TTG--A-ATAATAA--TG--GT----ATAAT
gi|5 : tattcgttcgaTTGA-TA-------TT--TTTG---------------------GGGAAA---------GTAGAGCCA-TT---------G-----A-AC-------------TTT----GGGTACAAA-CGATAGAAG-TCTCGATTCTTCCTTAATCAATCAACTGCT
gi|5 : aatttccctaAAAGTT--------GTTTTGGAAAGTA-TTATATGA-------CACCGTC-CCTCTG---C-------------AT--TTT-------------AGAATTAATTTTTCAAAAAT-C-ATA-TTT--TTGGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAA-TTTTTACTTT-T-GAGAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTG-----G-ACAACTACTAATTTCTTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--AC-------ATGA---TGCA-----GCC---GAGTTCACACCTAATTTTGTAAAAT-ATT--ATGTTCGACCACATAATCACCTTTG---C-------------ATCGTTTTTTTTTAAATTTAAGAAATA--CTT-CTAAAATCCTTTATTCTTGTTGGC---ATA-Atgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|7 : gGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGACGA-
gi|7 : ---ATA-ATGTCAA-AT-CG---------AGCT-A-G----G-AC-A-TTATTA-TTTTG-GAGGAT--G-ATAATTTAATTCGGT--ACATGT-AATCTA-AAAATCGGG-A-TACAT----TAATGAGTATCGCTAGTT-AGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt------GGAAAATTATCTCACA-ATAATAAACT---------GACTTGG-ACAACAAA-------TTTCTATTGGAACGCA-CGA----GG-TC-TG---CGTGCTTTATCATTCCTCTGCTT-----A-A-----ATACTCG-GCTTCGGTCGCACGT--GC--ACCTT---------------------------------------ATTTTGTAAAAT-ATTA-CT-ATTGATGACACAATCACCTGTGGGTCAATTTTTTTTTAAAT--TTT-------------AGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattat-GAA-TTCTGA-TAATAAC-CAAAC------TGC----AG------A--TTC--GCATTT--TTAGTGCT--ATCT----TTTTTT-C--AATATGGGGGTAAAA-CCTCT--GTAAAA-TGCAC--C-CAGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT------------------ACACT-TGTCAT-CA-------ACTCATTCCAATTATTTGATCA--ACATTCTAT-CA---CTTA--TTTGCTTTTT---ATTACTTT-AAATCATTTT--CATT---------TGAGACGCA-TTA-AA-ATAATGAAG-GCAGT----ATAATGTA--ATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333 11 33333 11 2222 1 1 1 333333 555555555555555 1 1 222222222222222222222222222222222222 11 99999999999999999999999999999999 1111 1111 111 44444444444444 2222222222222222222222222222222222222222222222 2222222 6666666666666666666666666666666666666 22 222222222 1 1111 333333 1 333333333 1111 11111 1 11 11 11 99999999999999 1 111111 1111111111 2222 555555555555555555555555555 22222222222 111 22222 111 1 1 33333333 11 33333 11 11 1 111 222222 111111111111111111111111111 1 1 1 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 1111 1111 555555555555555555555555 1111 11111 11 222 111111 222222222222222222222 3333333333333333 44444444444444 1111 111 11 111 111 222222 11 444444444 1 1111 2222 2222 11
lowQualScore : 3333333 1 1 1 88 33333 44 4444 1 22 5 5 1 1 5 222222 6 444444444444444 3 0 333333333333333333333333333333333333 0 1 99 0 00000000000000000000000000000000 3333 88 66 2222 5 5 000 0 0 00000000000000 0 5 77 0000000000000000000000000000000000000000000000 1 5555555 0 0 1 5555555555555555555555555555555555555 77 22 0 66 66 6 666 3 5 5 222222222 1 5 2222 66 555 0 1 222222 1 99 999999999 6 6 4444 6 88888 0 8 8 11 8 0 0 11 1 11 55555555555555 0 6 6 777777 5 5 0 9999999999 8888888 7 0 7777 555555555555555555555555555 1 9999 1 666 88888888888 777 55555 777 3 3 22222222 6 7 11 00000 11 66 11 8 6 8 999 1 3 888888 000000000000000000000000000 3 0 0 9 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 8 6 2222 5 5 666 5 2222 5 111111111111111111111111 66 1 7777 66 33333 00 66 1 1 0 66 555 4 555555 0 0 555555555555555555555 2 5 5 5 4444444444444444 5 11111111111111 66 0000 6 111 11 444 444 3 3 8 333333 99 000000000 0 4444 7777 1111 88
lowQualScore : ....... . . . .. ..... .. .... . .. . . . . . ...... . ............... . . .................................... . . .. . ................................ .... .. .. .... . . ... . . .............. . . .. .............................................. . ....... . . . ..................................... .. .. . .. .. . ... . . . ......... . . .... .. ... . . ...... . .. ......... . . .... . ..... . . . .. . . . .. . .. .............. . . . ...... . . . .......... ....... . . .... ........................... . .... . ... ........... ... ..... ... . . ........ . . .. ..... .. .. .. . . . ... . . ...... ........................... . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. . . .... . . ... . .... . ........................ .. . .... .. ..... .. .. . . . .. ... . ...... . . ..................... . . . . ................ . .............. .. .... . ... .. ... ... . . . ...... .. ......... . .... .... .... ..
lowQualScore : 5555555 0 0 0 55 33333 77 0000 0 00 5 0 0 0 5 888888 7 333333333333333 3 0 888888888888888888888888888888888888 8 4 66 8 00000000000000000000000000000000 6666 33 33 1111 7 7 000 7 7 99999999999999 7 7 99 9999999999999999999999999999999999999999999999 3 1111111 7 7 0 8888888888888888888888888888888888888 99 33 2 00 99 2 444 6 0 7 999999999 4 7 1111 00 999 1 4 222222 3 22 888888888 7 7 2222 4 88888 6 0 0 00 0 8 8 00 0 00 22222222222222 0 7 7 777777 7 7 1 5555555555 7777777 2 7 3333 222222222222222222222222222 0 5555 0 888 88888888888 555 00000 555 3 3 33333333 7 3 22 22222 00 44 00 0 0 0 666 4 2 666666 777777777777777777777777777 2 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 0 7 0000 7 0 222 0 4444 0 888888888888888888888888 99 4 0000 99 88888 66 11 0 1 9 22 666 4 888888 1 1 111111111111111111111 3 0 7 7 3333333333333333 7 77777777777777 99 8888 7 111 00 000 000 8 8 0 000000 00 000000000 0 2222 8888 2222 00
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--AC---C--ATGA---TGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT-GGGAGTGAGA---GGGGGG-GCCTGT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAAN-GGCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--AC-TTC--ACGA---TGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT--TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT-GGGAGTGAGAGGGGGGGGG-GCCTGT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAAG-GGCAGT----ATAATGTAACATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT--TT----------G--------GGGAAATTATTTTACGCATAGTAAACT---------G-----GTAC-------------TTT---CGGGTACGCAACGA----GGATC-CG---CGTTCTTTATCAATCAACTGCTT-----TCA-----ATA-TCG-GTTACGGTCGCACGTCAGCCGACCTTCTTACAAACATGCA-TTT-GCTTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCACCTGTG---C-------------AT--TTT-------------AGAAATA--TTTATTAAAATTC-ATATTTT--TGGGC---ATA-ATGTCGA-GTACG---------AGCT-A-G----G-GC-ATTTTTTATTTGTGAGATT--G-ACAGTT--ATTCGGTTAAATTTTGAGTTTGCAAAATCGGG-ACTATATTAAATAACGATTATTGTTGCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAAAT--GGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGGT-GTTA-A----ATT-ATCGGCATA-AAAATGCAGGGAGTGGGAGT-GTTCCGGGAACACAATAATGCAC-AATGGAAGG-CAAGTATTAGAAGTTGGGGGGGGGGGGGGGGGGGG-GGTTGTGGTTGTTAATGTTTACAAT-CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA--ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTT--AAATGTT--AGGCATTTGATACGGTTGCTAATT-T-ATCA-AAAATGTTACAA-A----AACAGGATTCAT------A-T------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTATA-TAT--CAAC-ACAGAA-GTCTGA-TAA---C-CAAAC------CA-----AA------A--CTG--GTATTT--T-AGTGCT--ATCG----TTTTT--CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTT-TAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATT-----CAT------T-AACACT-TGTTATCCATAAG--TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TCT--TTTA---TTT---ATTA-TTT-A------TTTG-AATT---------TGAGACGCGCTTG-AATATAGTAAGAGGCAATGATAACAATATAACATCAA
gi|10 : tat---ATA-ATGTCGA-GT-CG---------AGCT-ACG----G-CC-A-AGTTTATTTTGGAGAAT--AAG-AGTTTAATTCGGT--AATTT-------G-AAAATCGGG-A-TACAT----TAATGCTTATCGCTAGTCAGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTA--AAATAT--TGACg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-TA--GTCTAA-TA----T-CAAAC-------A-----AA------A--CTG--GCATTTCAT-AGTGC---ATCG----TTTTTTTC--AAAATGGGGATAAA--CCTC---GGAAAAATGCGC--AGTAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTT-----CAT------TAAATACT-TGT--T-CAT-----T-TTAATTCCAATTTGTTGATCA--ACA
gi|12 : -TCT--CAAC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAGCAGA--CTG--ACATTT-----ATGCTGCATCA----GTTTT--C--AATTTTGGGTTAA----------GTAAAA-TACA---C-TATTTCATA-A-T-C-ATAGCAATAGG--TTTT---AATATAT-TTT-CATTCTCCGTT------ATTACAGGT-AACACT-TGTT----AT-----TATTAACTCCAATTCGTTGATCA--TCAAtt
gi|13 : CAACTGCTT-----GCA------TACTCG-GTTACGGCTGCACGT--GC--A----C--ATGA---TGCAGCTGAGCTCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATAcatt
gi|13 : AATTC-TTATTTT--TTGGC---ATA-GTtaattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : caactgcttgcatactcggttacggctgcacgtgcacatgatgcagctgagctcacaaccaattttgtaaaatattatcatcgaccacatatGAA-GACAAGTAATAG-------GGAG--------GGGGTG-ACCTTT--TTTTTCA-ATTTACAAC-----CT---GTTCAAGTAAGTTTGAAAATTTTCA---Aaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgaG----TTTGAAAATTTTCAAAGCATTTAGTATAGTTG-TAATTGT-CTC--CATACGTTAGAAAAAAACAACAGGATTCAT------Aagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaaTT---TGGA-ACGCG-CAA----GG-TC-CA---CGTGCTTTATAGATCAACTTCTT-----A-A-----ATAATCGTTTTTTTGTCGCACGT--GC---C-T----ATGA---TGGA-----GCT---GAGTTCACACCTAATTTTGTAGAAT-ATT--ATGATCGACAACACAATCACCTTTG---C-------------A
gi|16 : TTCCGG-AACACAAATATGCACCAATGCA----CAACTCAGGCAAGTT-GAAAGGGAGA----GGGGG-GC---T--TTTTTTA-TTTTACAA-GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAG-ATTGTTCGTTC
gi|17 : C-------------TTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A----C--ATGA---TGCA-
gi|19 : acttggacaactactaattt--TTT-------------AGAAATA--TTT-CTAAAATCC-ATATTTT--T-AGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----A-AC-A-TTTTTA-TTTGGAGAATG-G-G-AGTCT--TTCGGT--AAT--------------ATCGGG-A-TACAT----TAAgccga
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAGTC----------AAAAATGATGGAAAATTATTTTAC-CATAGTAAACT---------G-------AC-------------TT-----GGGTACGCA-CGA----GA-TC-CG---CGAGCTTTATCAATCAACTGCTTTCTGAGTA-----ATACTCG-GTTAGGTCCGCCCGT--G
gi|2 : A---TGC--TT--TCTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCACCTGTG---C-------------AT--TTTTTAAAATTT----AGAAATA--TTT-CTAAAATCT-ATATTTT--T-GGC---ATA-ATGTCGA-GT-CG---------AGCT-A-GTCCTG-AC-C-TTTTTATTT-GGAGAAT--G---AGTGT--TTCGGT--AATTTTGAGTTTG-AAAATCGGG-A-TACAT----TAACGATTATTGCT-----GCTATTAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGATT-A--AAAGAA--TGGCATTTTATATA--GGAAAAAT-AATGAT-AATGTGGT-GTTA-CGTACATT-A-CGGCATCTAAAATGCAGGGAGTGGGAGT-GTTCCGG-AACACAAATATGCACCTATG------CA--CAATGGAGGC----GAGTAAAAGGAGGGGGGTGCCTAT--TTT---A-ATTTACAACNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNN-NNNN-NNNNNN-NNNNNNNATTGTTCGTTCA-AGCAAGTGG-TTTTT-----TTT--AA-TGTT--AAGTATTTAATATGGTTG-TAATT-TTATC--AAAAAGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-gcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtttttggaaaatattatgatcgaccacacagtcacctgtgcattttttaaaatttagaaatatttctaaaatctatatttttggcataatgtcgagtcgagctagtcctgacctttttatttggagaatgagtgtttcggtaattttgagtttgaaaatcgggatacattaacgattattgctgctattagtagatattgttatttttcgcagagattaaaagaatggcattttatataggaaaaataatgataatgtggtgttacgtacattacggcatctaaaatgcagggagtgggagtgttccggaacacaaatatgcacctatgcacaatggaggcgagtaaaaggaggggggtgcctattttaatttacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttcgttcaagcaagtggttttttttaatgttaagtatttaatatggttgtaattttatcaaaaagttagaataaacaggattcatatttcctatcacaaacgtctctttgctatcgtaccgacccaatatatttcacaccttactaccagtcaaaaccttgtgtgaacccgaggtcgctgaccaccattagttctattgttgcgataga
gi|20 : ctgcgatttactctacacgaagaataacaaatattctgatttacacgtttacttgaatattaatcagtcaaaaatgatggaaaattattttaccatagtaaactgacttgggtacgcacgagatccgcgagctttatcaatcaactgctttctgagtaatactcggttaggtccgcccgtggcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacAT-AATGTGGT-GTTA-C----ATT-A-CGGCATCT-AAATGCAAGGGGTGGGAA-------------------ATGCACAAGTGGAA-A-CAAGTAATAG-GGAT-GGG-GTGA-------------CCT-T--TTATTCA-ATTTACAAC
gi|21 : AC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAACAGA--CTG--ACATTT--T-AGTGCT--ATCG----GTTTT--C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--C-TAATTCAct
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGAACTTTCATTTA---CTT---AT-ATTTT-A------CTTTAAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAA----CAGT----GTAAT
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTA--AAAAATGCTGACATT--------------AAT-AATGAT-AATATTGT-GTTA-C----ATT-A-CGGCATCTAAAGCGCAGAGGGTGGGA
gi|26 : -TA-TCT--CAAC-AT-GAA-AATCGA-TAA---C-CAATC------CA-----AA---------CTGCAG-ACTG--T-CATGCT--ATCG----TTTTT--C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tg
gi|27 : AT-CATGTGGT-TCTAGT----ATT-A-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAACAAATAT-CACAAATGGAGTG-CAAGTAcca
gi|29 : aGGTTTTT------TT--A--TGTT--AAGTATATAATATGGTTG-TAATTCT-ATC--AAAAGGTTAGAATA----AACAGGATTCAT------Aga
gi|3 : ---ATA-ATATCA---T-C----------AGCTGA-G----G-TC-A-TGTTTATTTTGGAGAATTTG-G--GTTTAATTTAGT--AATTTT-----TG-AAAACCGGGGA-TACAT-----AA--GTTATCGATA-TT-GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTT--AAATGT--TGACAATC-------------AAT-AATGAT-AATGTGGTTGTTA-C----ATTTA-CGGCATCTAAA-TGCAAGGGGT--------TT--GGGAA-------ATGCACAAGTGGAA---CAAGTAATAG-GGAT-GGGAGTGA-------------CCTGT--TTATTC--ATTTACAAC
gi|3 : gtttTTATTCATTTACAACC--TG---TTTTAAAAATTG--AAATTTA--AAGCATTTAGTATGGTTG-TAATT-T-GTCTCCATACGTTAAAA------AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-CG-T-----GAC-AT-GAA-ATCCAATTAA---C-CAAACAAACTGCAGGGGGAA------AACCTG--GCA---------TGCT--ATCG-----TTAT--C--AAACT----GT---------------AAA-TACAC--C-TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACAT------A-AACACT-TGTTAT--AT-------TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACC-CTTT--TTTT---CTTTAAATCATTTTCA------TTT--ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT--C--AAAGTGGGGGTAAAA-CCTCA--GTAAAA-TAC-------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGTTAT-C-T-----T-TTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAG
gi|32 : T-G-CGGCATCTAAAATGCAGGGAGTGGGAGC-G
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TTTTTCAACCAC-AACCGTCTGA--AA---CACAAAC------CA----------------CTG--TAATTT--TTAGTGCT--ATCGGGATTTTTT--C--AAAT--GGGATAAAAGCCTCTGGATAAAA-TGCGC--T-GAAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTT-----CAT------T-AACACTCTGT-AT-CACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGA-CTTC--TTTA---TTT---CATGTTCT-A------TTT--AATT---------TGAGACGCA-TTG--A-ATAATAAT-G---GT----ATAAT
gi|5 : tattcgttcgaTTGA-TA-------TT--TTTG---------------------GGGAAA---------GTAGAGCCA-TT---------G-----A-AC-------------TTT----GGGTACAAA-CGATAGAAG-TCTCGATTCTTCCTTAATCAATCAACTGCT
gi|5 : aatttccctaAAAGTT--------GTTTTGGAAAGTA-TTATATGA-------CACCGTC-CCTCTG---C-------------AT--TTT-------------AGAATTAATTTTTCAAAAAT-C-ATA-TTT--TTGGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAA-TTTTTACTTTTGAGAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTG-----G-ACAACTACTAATTTCTTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A----C--ATGA---TGCA-----GCC---GAGTTCACACCTAATTTTGTAAAAT-ATT--ATGTTCGACCACATAATCACCTTTG---C-------------ATCGTTTTTTTTTAAATTTAAGAAATA--CTT-CTAAAATCCTTTATTCTTGTTGGC---ATA-Atgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|7 : gGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGACGA-
gi|7 : ---ATA-ATGTCAA-AT-CG---------AGCT-A-G----G-AC-A-TTATTATTTTGGAGGAT--G-ATAATTTAATTCGGT--ACATGT-AATCTA-AAAATCGGG-A-TACAT----TAATGAGTATCGCTAGTTAGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt------GGAAAATTATCTCACA-ATAATAAACT---------GACTTGG-ACAACAAA-------TTTCTATTGGAACGCA-CGA----GG-TC-TG---CGTGCTTTATCATTCCTCTGCTT-----A-A-----ATACTCG-GCTTCGGTCGCACGT--GC--AC-----------------------CTT---------------ATTTTGTAAAAT-ATTA-CT-ATTGATGACACAATCACCTGTGGGTCAATTTTTTTTTAAAT--TTT-------------AGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattat-GAA-TTCTGA-TAATAAC-CAAAC------TGC----AG------A--TTC--GCATTT--TTAGTGCT--ATCT----TTTTTT-C--AATATGGGGGTAAAA-CCTCT--GTAAAA-TGCAC--C-CAGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT------------------ACACT-TGTCAT-CA-------ACTCATTCCAATTATTTGATCA--ACATTCTAT-CA---CTTA--TTTGCTTTTT---ATTACTTT-AAATCATTTT--CATT---------TGAGACGCA-TTA-AA-ATAATGAA-GGCAGT----ATAATGTA--ATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333 11 33333 11 2222 1 1 1 333333 555555555555555 1 1 222222222222222222222222222222222222 11 99999999999999999999999999999999 1111 1111 111 44444444444444 8888888888888888888888888888888888888888888888 2222222 66666666666666666666666666666666666666666666 22 222222222 1 1111 333333 1 333333333 1111 11111 1 11 1 11 11 99999999999999 1 1111 22222222 2222 444444444444444444444444444444 1111 333333333333 111 22222 111 1 1 2222 1 33333 1111 11 1 111 222222 111111111111111111111111111 1 1 1 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 1111 1111 555555555555555555555555 1111 11111 11 222 111111 222222222222222222222 3333333333333333 44444444444444 1111 111 11 111 111 222222 11 444444444 1 1111 2222 2222 11
lowQualScore : 3333333 1 1 1 88 33333 44 4444 1 22 5 5 1 1 5 222222 6 444444444444444 3 0 333333333333333333333333333333333333 0 1 99 0 00000000000000000000000000000000 3333 88 66 2222 5 5 000 0 0 00000000000000 0 5 77 8888888888888888888888888888888888888888888888 1 5555555 0 0 1 55555555555555555555555555555555555555555555 77 22 66 5 77 1 777 4 5 5 222222222 1 5 2222 66 555 7 222222 1 99 999999999 6 6 4444 6 88888 0 8 8 11 8 0 11 1 11 55555555555555 0 6 6 4444 6 5 5 0 22222222 2 8888888 7 3333 999999999999999999999999999999 7777 1 666 555555555555 777 55555 777 3 3 0000 0 6 7 99 00000 2222 11 8 8 6 999 1 3 888888 000000000000000000000000000 3 0 0 9 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 8 6 2222 5 5 666 5 2222 5 111111111111111111111111 66 1 7777 66 33333 00 66 1 1 0 66 555 4 555555 0 0 555555555555555555555 2 5 5 5 4444444444444444 5 11111111111111 66 0000 6 111 11 444 444 3 3 8 333333 99 000000000 0 4444 5555 1111 88
lowQualScore : ....... . . . .. ..... .. .... . .. . . . . . ...... . ............... . . .................................... . . .. . ................................ .... .. .. .... . . ... . . .............. . . .. .............................................. . ....... . . . ............................................ .. .. .. . .. . ... . . . ......... . . .... .. ... . ...... . .. ......... . . .... . ..... . . . .. . . .. . .. .............. . . . .... . . . . ........ . ....... . .... .............................. .... . ... ............ ... ..... ... . . .... . . . .. ..... .... .. . . . ... . . ...... ........................... . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. . . .... . . ... . .... . ........................ .. . .... .. ..... .. .. . . . .. ... . ...... . . ..................... . . . . ................ . .............. .. .... . ... .. ... ... . . . ...... .. ......... . .... .... .... ..
lowQualScore : 5555555 0 0 0 55 33333 77 0000 0 00 5 0 0 0 5 888888 7 333333333333333 3 0 888888888888888888888888888888888888 8 4 66 8 00000000000000000000000000000000 6666 33 33 1111 7 7 000 7 7 99999999999999 7 7 99 1111111111111111111111111111111111111111111111 3 1111111 7 7 0 88888888888888888888888888888888888888888888 99 33 77 0 99 4 000 0 0 7 999999999 4 7 1111 00 999 1 222222 3 22 888888888 7 7 2222 4 88888 6 0 0 00 0 6 00 0 00 22222222222222 0 7 7 2222 7 7 7 1 88888888 5 7777777 2 7777 000000000000000000000000000000 7777 0 888 444444444444 555 00000 555 3 3 7777 3 7 3 22 22222 6666 00 0 0 0 666 4 2 666666 777777777777777777777777777 2 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 0 7 0000 7 0 222 0 4444 0 888888888888888888888888 99 4 0000 99 88888 66 11 0 1 9 22 666 4 888888 1 1 111111111111111111111 3 0 7 7 3333333333333333 7 77777777777777 99 8888 7 111 00 000 000 8 8 0 000000 00 000000000 0 2222 8888 2222 00
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCATG--------ATGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT---------TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT----GGGAGTGA---GAGGGGGG-GCCTGT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCATG--------ATGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT---------TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT----GGGAGTGA---GAGGGGGG-GCCTGT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-NGGCAGT----ATAATGTAACATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT--TT----------G--------GGGAAATTATTTTACGCATAGTAAACT---------G-----GTAC-------------TTT---CGGGTACGCAACGA----GGATC-CG---CGTTCTTTATCAATCAACTGCTT-----TCA-----ATA-TCG-GTTACGGTCGCACGTCAGCCGACCTTCTTACAAACATGCA-TTT-GCTTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCACCTGTG---C-------------AT---------TTT-------------AGAAATA--TTTATTAAAATTC-ATATTTT--TGGGC---ATA-ATGTCGA-GTACG---------AGCT-A-G----G-GC-ATTTTTTATTTGTGAGATT--G-ACAGTT--ATTCGGTTAAATTTTGAGTTTGCAAAATCGGG-ACTATATTAAATAACGATTATTGTTGCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAAAT--GGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGGT-GT----TA-AATT-ATCGGCATA-AAAATGCAGGGAGTGGGAGT-GTTCCGGGAACACAATAATGCAC-AATGGAAGG-CAAGTATTAGAAGTTGGGGGGGGGGGG---GGGGGGGG-GGTTGTGGTTGTTAATGTTTACAAT--CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA-ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTT--AAATGTT--AGGCATTTGATACGGTTGCTAA-TT-TATCA-AAAATGTTACAA-A----AACAGGATTCAT------A-T------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTATA-TAT--CAAC-ACAGAA-GTCTGA-TAA---C-CAAAC------CA-----AA------A--CTG--GTATTT--T-AGTGCT--ATCG----TTTTT--CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTT-TAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATT-----CAT------T-AACACT-TGTTATCCATAAG--TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TCT--TTTA---TTT---ATTA-TTT-A------TTTG-AATT---------TGAGACGCGCTTG-AATATAGTAAGAGGCAATGATAACAATATAACATCAA
gi|10 : tat---ATA-ATGTCGA-GT-CG---------AGCT-ACG----G-CC-A-AGTTTATTTTGGAGAAT--AAG-AGTTTAATTCGGT--AATTT-------G-AAAATCGGG-A-TACAT----TAATGCTTATCGCTAGTCAGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTA--AAATAT--TGACg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-TA--GTCTAA-TA----T-CAAAC-------A-----AA------A--CTG--GCATTTCAT-AGTGC---ATCG----TTTTTTTC--AAAATGGGGATAAA--CCTC---GGAAAAATGCGC--AGTAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTT-----CAT------TAAATACT-TGT--T-CAT-----T-TTAATTCCAATTTGTTGATCA--ACA
gi|12 : -TCT--CAAC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAGCAGA--CTG--ACATTT-----ATGCTGCATCA----GTTTT--C--AATTTTGGGTTAA----------GTAAAA-TACA---C-TATTTCATA-A-T-C-ATAGCAATAGG--TTTT---AATATAT-TTT-CATTCTCCGTT------ATTACAGGT-AACACT-TGTT----AT-----TATTAACTCCAATTCGTTGATCA--TCAAtt
gi|13 : CAACTGCTT-----GCA------TACTCG-GTTACGGCTGCACGT--GC--A-CATG--------ATGCAGCTGAGCTCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATAcatt
gi|14 : GAA-GACAAGTAATAG----------GGAG--------GGGGTG-ACCTTT--TTTTTCA-ATTTACAAC------CT---GTTCAAGTAAGTTTGAAAATTTTCA---Ataattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgaG----TTTGAAAATTTTCAAAGCATTTAGTATAGTTG-TAA-TTGTCTC--CATACGTTAGAAAAAAACAACAGGATTCAT------Aagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaaTT---TGGA-ACGCG-CAA----GG-TC-CA---CGTGCTTTATAGATCAACTTCTT-----A-A-----ATAATCGTTTTTTTGTCGCACGT--GC---CTATG--------ATGGA-----GCT---GAGTTCACACCTAATTTTGTAGAAT-ATT--ATGATCGACAACACAATCACCTTTG---C-------------A
gi|16 : TTCCGG-AACACAAATATGCACCAATGCA----CAACTCAGGCAAGTT----GAAAGGGA---GAGGGGGG---CT----TTTTTTA-TTTTACAA--GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTC
gi|17 : C-------------TTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A-CATG--------ATGCA-
gi|19 : acttggacaactactaattt---------TTT-------------AGAAATA--TTT-CTAAAATCC-ATATTTT--T-AGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----A-AC-A-TTTTTA-TTTGGAGAATG-G-G-AGTCT--TTCGGT--AAT--------------ATCGGG-A-TACAT----TAAgccga
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAGTC----------AAAAATGATGGAAAATTATTTTAC-CATAGTAAACT---------G-------AC-------------TT-----GGGTACGCA-CGA----GA-TC-CG---CGAGCTTTATCAATCAACTGCTTTCTGAGTA-----ATACTCG-GTTAGGTCCGCCCGT--G
gi|2 : --------ATGC--TT--TCTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCACCTGTG---C-------------ATTTTTTAAAATTT-------------AGAAATA--TTT-CTAAAATCT-ATA-TTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-GTCCTG-AC-C-TTTTTA-TTTGGAGAAT----G-AGTGT--TTCGGT--AATTTTGAGTTTG-AAAATCGGG-A-TACAT----TAACGATTATTGCT-----GCTATTAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGA-TTA--AAAGAA--TGGCATTTTATATA--GGAAAAAT-AATGAT-AATGTGGT-GTTACGTA-CATT-A-CGGCATCTAAAATGCAGGGAGTGGGAGT-GTTCC-GGAACACAAATATGCACCTAT-----G-CA--CAATGGAGGC-------GAGTAAAAGGAGGGGGGTGCCTAT--TTT---A-ATTTACAACNNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNN-NNNN-NNNNNN-NNNNNNATTGTTCGTTCA-AGCAAGT-GGTTTTT-----TTT---AATGTT--AAGTATTTAATATGGTTG-TAATTT-TATC--AAAAAGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-gcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtttttggaaaatattatgatcgaccacacagtcacctgtgcattttttaaaatttagaaatatttctaaaatctatatttttggcataatgtcgagtcgagctagtcctgacctttttatttggagaatgagtgtttcggtaattttgagtttgaaaatcgggatacattaacgattattgctgctattagtagatattgttatttttcgcagagattaaaagaatggcattttatataggaaaaataatgataatgtggtgttacgtacattacggcatctaaaatgcagggagtgggagtgttccggaacacaaatatgcacctatgcacaatggaggcgagtaaaaggaggggggtgcctattttaatttacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttcgttcaagcaagtggttttttttaatgttaagtatttaatatggttgtaattttatcaaaaagttagaataaacaggattcatatttcctatcacaaacgtctctttgctatcgtaccgacccaatatatttcacaccttactaccagtcaaaaccttgtgtgaacccgaggtcgctgaccaccattagttctattgttgcgataga
gi|20 : ctgcgatttactctacacgaagaataacaaatattctgatttacacgtttacttgaatattaatcagtcaaaaatgatggaaaattattttaccatagtaaactgacttgggtacgcacgagatccgcgagctttatcaatcaactgctttctgagtaatactcggttaggtccgcccgtggcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacAT-AATGTGGT-GT----TA-CATT-A-CGGCATCT-AAATGCAAGGGGTGGGAA-------------------ATGCACAAGTGGAA-A-CAAGTAATAG-GGAT----GGG-GTGA-------------CCT-T--TTATTCA-ATTTACAAC-
gi|21 : AC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAACAGA--CTG--ACATTT--T-AGTGCT--ATCG----GTTTT--C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--C-TAATTCAct
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGAACTTTCATTTA---CTT---AT-ATTTT-A------CTTTAAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAA----CAGT----GTAAT
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTA--AAAAATGCTGACATT--------------AAT-AATGAT-AATATTGT-GT----TA-CATT-A-CGGCATCTAAAGCGCAGAGGGTGGGA
gi|26 : -TA-TCT--CAAC-AT-GAA-AATCGA-TAA---C-CAATC------CA-----AA---------CTGCAG-ACTG--T-CATGCT--ATCG----TTTTT--C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tg
gi|27 : AT-CATGTGGT-TC----TAGTATT-A-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAACAAATAT-CACAAATGGAGTG-CAAGTAcca
gi|29 : aGGTTTTT------TT--A--TGTT--AAGTATATAATATGGTTG-TAA-TTCTATC--AAAAGGTTAGAATA----AACAGGATTCAT------Aga
gi|3 : ---ATA-ATATCA---T-C----------AGCTGA-G----G-TC-A-TGTTTATTTTGGAGAATTTG-G--GTTTAATTTAGT--AATTTT-----TG-AAAACCGGGGA-TACAT-----AA--GTTATCGATA-TT-GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTT--AAATGT--TGACAATC-------------AAT-AATGAT-AATGTGGTTGT----TA-CATTTA-CGGCATCTAAA-TGCAAGGGGT--------TT--GGGAA-------ATGCACAAGTGGAA---CAAGTAATAG-GGAT----GGGAGTGA-------------CCTGT--TTATTC--ATTTACAAC-
gi|3 : gtttTTATTCATTTACAACC--TG---TTTTAAAAATTG--AAATTTA--AAGCATTTAGTATGGTTG-TAA-TT-TGTCTCCATACGTTAAAA------AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-CG-T-----GAC-AT-GAA-ATCCAATTAA---C-CAAACAAACTGCAGGGGGAA------AACCTG--GCA---------TGCT--ATCG-----TTAT--C--AAACT----GT---------------AAA-TACAC--C-TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACAT------A-AACACT-TGTTAT--AT-------TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACC-CTTT--TTTT---CTTTAAATCATTTTCA------TTT--ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT--C--AAAGTGGGGGTAAAA-CCTCA--GTAAAA-TAC-------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGTTAT-C-T-----T-TTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAG
gi|32 : T-G-CGGCATCTAAAATGCAGGGAGTGGGAGC-G
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TTTTTCAACCAC-AACCGTCTGA--AA---CACAAAC------CA----------------CTG--TAATTT--TTAGTGCT--ATCGGGATTTTTT--C--AAAT--GGGATAAAAGCCTCTGGATAAAA-TGCGC--T-GAAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTT-----CAT------T-AACACTCTGT-AT-CACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGA-CTTC--TTTA---TTT---CATGTTCT-A------TTT--AATT---------TGAGACGCA-TTG--A-ATAATAA-TG---GT----ATAAT
gi|5 : tattcgttcgaTTGA-TA-------TT--TTTG---------------------GGGAAA---------GTAGAGCCA-TT---------G-----A-AC-------------TTT----GGGTACAAA-CGATAGAAG-TCTCGATTCTTCCTTAATCAATCAACTGCT
gi|5 : aatttccctaAAAGTT--------GTTTTGGAAAGTA-TTATATGA-------CACCGTC-CCTCTG---C-------------AT---------TTT-------------AGAATTAATTTTTCAAAAAT-C-ATA-TTT--TTGGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAA-TTTTTACTTTTGAGAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTG-----G-ACAACTACTAATTTCTTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A-CATG--------ATGCA-----GCC---GAGTTCACACCTAATTTTGTAAAAT-ATT--ATGTTCGACCACATAATCACCTTTG---C-------------ATCG-------TTTTTTTTTAAATTTAAGAAATA--CTT-CTAAAATCCTTTATTCTTGTTGGC---ATA-Atgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|7 : gGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGACGA-
gi|7 : ---ATA-ATGTCAA-AT-CG---------AGCT-A-G----G-AC-A-TTATTATTTTGGAGGAT--G-ATAATTTAATTCGGT--ACATGT-AATCTA-AAAATCGGG-A-TACAT----TAATGAGTATCGCTAGTTAGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt------GGAAAATTATCTCACA-ATAATAAACT---------GACTTGG-ACAACAAA-------TTTCTATTGGAACGCA-CGA----GG-TC-TG---CGTGCTTTATCATTCCTCTGCTT-----A-A-----ATACTCG-GCTTCGGTCGCACGT--GC--ACC-----------------TT---------------------ATTTTGTAAAAT-ATTA-CT-ATTGATGACACAATCACCTGTGGGTCAATTTTTTTTTAAAT---------TTT-------------AGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattat-GAA-TTCTGA-TAATAAC-CAAAC------TGC----AG------A--TTC--GCATTT--TTAGTGCT--ATCT----TTTTTT-C--AATATGGGGGTAAAA-CCTCT--GTAAAA-TGCAC--C-CAGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT------------------ACACT-TGTCAT-CA-------ACTCATTCCAATTATTTGATCA--ACATTCTAT-CA---CTTA--TTTGCTTTTT---ATTACTTT-AAATCATTTT--CATT---------TGAGACGCA-TTA-AA-ATAATGA-AGGCAGT----ATAATGTA--ATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333 11 33333 11 2222 1 1 1 333333 555555555555555 1 1 222222222222222222222222222222222222 11 99999999999999999999999999999999 1111 1111 111 44444444444444 8888888888888888888888888888888888888888888888 2222222 66666666666666666666666666666666666666666666 22 222222222 1 1111 333333 1 333333333 1111 11111 1 11 1 11 11 99999999999999 1 1111 22222222 2222 444444444444444444444444444444 1111 333333333333 111 22222 111 1 1 2222 1 33333 1111 11 1 111 222222 111111111111111111111111111 1 1 1 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 1111 1111 555555555555555555555555 1111 11111 11 222 111111 222222222222222222222 3333333333333333 44444444444444 1111 111 11 111 111 222222 11 444444444 1 1111 2222 2222 11
lowQualScore : 3333333 1 1 1 88 33333 44 4444 1 22 5 5 1 1 5 222222 6 444444444444444 3 0 333333333333333333333333333333333333 0 1 99 0 00000000000000000000000000000000 3333 88 66 2222 5 5 000 0 0 00000000000000 0 5 77 8888888888888888888888888888888888888888888888 1 5555555 0 0 1 55555555555555555555555555555555555555555555 77 22 66 5 77 1 777 4 5 5 222222222 1 5 2222 66 555 7 222222 1 99 999999999 6 6 4444 6 88888 0 8 8 11 8 0 11 1 11 55555555555555 0 6 6 4444 6 5 5 0 22222222 2 8888888 7 3333 999999999999999999999999999999 7777 1 666 555555555555 777 55555 777 3 3 0000 0 6 7 99 00000 2222 11 8 8 6 999 1 3 888888 000000000000000000000000000 3 0 0 9 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 8 6 2222 5 5 666 5 2222 5 111111111111111111111111 66 1 7777 66 33333 00 66 1 1 0 66 555 4 555555 0 0 555555555555555555555 2 5 5 5 4444444444444444 5 11111111111111 66 0000 6 111 11 444 444 3 3 8 333333 99 000000000 0 4444 4444 1111 88
lowQualScore : ....... . . . .. ..... .. .... . .. . . . . . ...... . ............... . . .................................... . . .. . ................................ .... .. .. .... . . ... . . .............. . . .. .............................................. . ....... . . . ............................................ .. .. .. . .. . ... . . . ......... . . .... .. ... . ...... . .. ......... . . .... . ..... . . . .. . . .. . .. .............. . . . .... . . . . ........ . ....... . .... .............................. .... . ... ............ ... ..... ... . . .... . . . .. ..... .... .. . . . ... . . ...... ........................... . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. . . .... . . ... . .... . ........................ .. . .... .. ..... .. .. . . . .. ... . ...... . . ..................... . . . . ................ . .............. .. .... . ... .. ... ... . . . ...... .. ......... . .... .... .... ..
lowQualScore : 5555555 0 0 0 55 33333 77 0000 0 00 5 0 0 0 5 888888 7 333333333333333 3 0 888888888888888888888888888888888888 8 4 66 8 00000000000000000000000000000000 6666 33 33 1111 7 7 000 7 7 99999999999999 7 7 99 1111111111111111111111111111111111111111111111 3 1111111 7 7 0 88888888888888888888888888888888888888888888 99 33 77 0 99 4 000 0 0 7 999999999 4 7 1111 00 999 1 222222 3 22 888888888 7 7 2222 4 88888 6 0 0 00 0 6 00 0 00 22222222222222 0 7 7 2222 7 7 7 1 88888888 5 7777777 2 7777 000000000000000000000000000000 7777 0 888 444444444444 555 00000 555 3 3 7777 3 7 3 22 22222 6666 00 0 0 0 666 4 2 666666 777777777777777777777777777 2 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 0 7 0000 7 0 222 0 4444 0 888888888888888888888888 99 4 0000 99 88888 66 11 0 1 9 22 666 4 888888 1 1 111111111111111111111 3 0 7 7 3333333333333333 7 77777777777777 99 8888 7 111 00 000 000 8 8 0 000000 00 000000000 0 2222 8888 2222 00
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCATG--------ATGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT---------TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT----GGGAGTGA---GAGGGGGG-GCCTGT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCATG--------ATGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT---------TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT----GGGAGTGA---GAGGGGGG-GCCTGT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT--TT----------G--------GGGAAATTATTTTACGCATAGTAAACT---------G-----GTAC-------------TTT---CGGGTACGCAACGA----GGATC-CG---CGTTCTTTATCAATCAACTGCTT-----TCA-----ATA-TCG-GTTACGGTCGCACGTCAGCCGACCTTCTTACAAACATGCA-TTT-GCTTAAAAGTT------TGTTTTTGGAAAGTAATTA-ATGATCGACCACACAGTCACCTGTG---C-------------AT---------TTT-------------AGAAATA--TTTATTAAAATTC-ATATTTT--TGGGC---ATA-ATGTCGA-GTACG---------AGCT-A-G----G-GC-ATTTTTTATTTGTGAGATT--G-ACAGTT--ATTCGGTTAAATTTTGAGTTTGCAAAATCGGG-ACTATATTAAATAACGATTATTGTTGCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAAAT--GGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGGT-GT----TA-AATT-ATCGGCATA-AAAATGCAGGGAGTGGGAGT-GTTCCGGGAACACAATAATGCAC-AATGGAAGG-CAAGTATTAGAAGTTGGGGGGGGGGGG---GGGGGGGG-GGTTGTGGTTGTTAATGTTTACAAT--CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA-ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTT--AAATGTT--AGGCATTTGATACGGTTGCTAA-TT-TATCA-AAAATGTTACAA-A----AACAGGATTCAT------A-T------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTATA-TAT--CAAC-ACAGAA-GTCTGA-TAA---C-CAAAC------CA-----AA------A--CTG--GTATTT--T-AGTGCT--ATCG----TTTTT--CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTT-TAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATT-----CAT------T-AACACT-TGTTATCCATAAG--TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA--TCT--TTTA---TTT---ATTA-TTT-A------TTTG-AATT---------TGAGACGCGCTTG-AATATAGTAAGAGGCAATGATAACAATATAACATCAA
gi|10 : tat---ATA-ATGTCGA-GT-CG---------AGCT-ACG----G-CC-A-AGTTTATTTTGGAGAAT--AAG-AGTTTAATTCGGT--AATTT-------G-AAAATCGGG-A-TACAT----TAATGCTTATCGCTAGTCAGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTA--AAATAT--TGACg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-TA--GTCTAA-TA----T-CAAAC-------A-----AA------A--CTG--GCATTTCAT-AGTGC---ATCG----TTTTTTTC--AAAATGGGGATAAA--CCTC---GGAAAAATGCGC--AGTAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTT-----CAT------TAAATACT-TGT--T-CAT-----T-TTAATTCCAATTTGTTGATCA--ACA
gi|12 : -TCT--CAAC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAGCAGA--CTG--ACATTT-----ATGCTGCATCA----GTTTT--C--AATTTTGGGTTAA----------GTAAAA-TACA---C-TATTTCATA-A-T-C-ATAGCAATAGG--TTTT---AATATAT-TTT-CATTCTCCGTT------ATTACAGGT-AACACT-TGTT----AT-----TATTAACTCCAATTCGTTGATCA--TCAAtt
gi|13 : CAACTGCTT-----GCA------TACTCG-GTTACGGCTGCACGT--GC--A-CATG--------ATGCAGCTGAGCTCACAA--C------CAATTTTGTAAAAT-ATT--ATCATCGACCACATAcatt
gi|14 : GAA-GACAAGTAATAG----------GGAG--------GGGGTG-ACCTTT--TTTTTCA-ATTTACAAC------CT---GTTCAAGTAAGTTTGAAAATTTTCA---Ataattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgaG----TTTGAAAATTTTCAAAGCATTTAGTATAGTTG-TAA-TTGTCTC--CATACGTTAGAAAAAAACAACAGGATTCAT------Aagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaaTT---TGGA-ACGCG-CAA----GG-TC-CA---CGTGCTTTATAGATCAACTTCTT-----A-A-----ATAATCGTTTTTTTGTCGCACGT--GC---CTATG--------ATGGA-----GCT---GAGTTCACACCTAATTTTGTAGAAT-ATT--ATGATCGACAACACAATCACCTTTG---C-------------A
gi|16 : TTCCGG-AACACAAATATGCACCAATGCA----CAACTCAGGCAAGTT----GAAAGGGA---GAGGGGGG---CT----TTTTTTA-TTTTACAA--GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTC
gi|17 : C-------------TTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A-CATG--------ATGCA-
gi|19 : acttggacaactactaattt---------TTT-------------AGAAATA--TTT-CTAAAATCC-ATATTTT--T-AGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----A-AC-A-TTTTTA-TTTGGAGAATG-G-G-AGTCT--TTCGGT--AAT--------------ATCGGG-A-TACAT----TAAgccga
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAGTC----------AAAAATGATGGAAAATTATTTTAC-CATAGTAAACT---------G-------AC-------------TT-----GGGTACGCA-CGA----GA-TC-CG---CGAGCTTTATCAATCAACTGCTTTCTGAGTA-----ATACTCG-GTTAGGTCCGCCCGT--G
gi|2 : --------ATGC--TT--TCTTAAAAGTT------TGTTTTTGGAAAATA-TTA--TGATCGACCACACAGTCACCTGTG---C-------------ATTTTTTAAAATTT-------------AGAAATA--TTT-CTAAAATCT-ATA-TTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-GTCCTG-AC-C-TTTTTA-TTTGGAGAAT----G-AGTGT--TTCGGT--AATTTTGAGTTTG-AAAATCGGG-A-TACAT----TAACGATTATTGCT-----GCTATTAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGA-TTA--AAAGAA--TGGCATTTTATATA--GGAAAAAT-AATGAT-AATGTGGT-GTTACGTA-CATT-A-CGGCATCTAAAATGCAGGGAGTGGGAGT-GTTCC-GGAACACAAATATGCACCTAT-----G-CA--CAATGGAGGC-------GAGTAAAAGGAGGGGGGTGCCTAT--TTT---A-ATTTACAACNNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNN-NNNN-NNNNNN-NNNNNNATTGTTCGTTCA-AGCAAGT-GGTTTTT-----TTT---AATGTT--AAGTATTTAATATGGTTG-TAATTT-TATC--AAAAAGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-gcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtttttggaaaatattatgatcgaccacacagtcacctgtgcattttttaaaatttagaaatatttctaaaatctatatttttggcataatgtcgagtcgagctagtcctgacctttttatttggagaatgagtgtttcggtaattttgagtttgaaaatcgggatacattaacgattattgctgctattagtagatattgttatttttcgcagagattaaaagaatggcattttatataggaaaaataatgataatgtggtgttacgtacattacggcatctaaaatgcagggagtgggagtgttccggaacacaaatatgcacctatgcacaatggaggcgagtaaaaggaggggggtgcctattttaatttacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttcgttcaagcaagtggttttttttaatgttaagtatttaatatggttgtaattttatcaaaaagttagaataaacaggattcatatttcctatcacaaacgtctctttgctatcgtaccgacccaatatatttcacaccttactaccagtcaaaaccttgtgtgaacccgaggtcgctgaccaccattagttctattgttgcgataga
gi|20 : ctgcgatttactctacacgaagaataacaaatattctgatttacacgtttacttgaatattaatcagtcaaaaatgatggaaaattattttaccatagtaaactgacttgggtacgcacgagatccgcgagctttatcaatcaactgctttctgagtaatactcggttaggtccgcccgtggcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacAT-AATGTGGT-GT----TA-CATT-A-CGGCATCT-AAATGCAAGGGGTGGGAA-------------------ATGCACAAGTGGAA-A-CAAGTAATAG-GGAT----GGG-GTGA-------------CCT-T--TTATTCA-ATTTACAAC-
gi|21 : AC-AT-GAA-ATTCGA-TAT---C-CAAAT------CA-----AACAACAGA--CTG--ACATTT--T-AGTGCT--ATCG----GTTTT--C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--C-TAATTCAct
gi|22 : TTGTTGATCA--ACA-T-TAT-TAGAACTTTCATTTA---CTT---AT-ATTTT-A------CTTTAAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAA----CAGT----GTAAT
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTA--AAAAATGCTGACATT--------------AAT-AATGAT-AATATTGT-GT----TA-CATT-A-CGGCATCTAAAGCGCAGAGGGTGGGA
gi|26 : -TA-TCT--CAAC-AT-GAA-AATCGA-TAA---C-CAATC------CA-----AA---------CTGCAG-ACTG--T-CATGCT--ATCG----TTTTT--C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tg
gi|27 : AT-CATGTGGT-TC----TAGTATT-A-CGGCATCTAAAATGCCAGGGATGGGGACTGTT---GGAAAACAAATAT-CACAAATGGAGTG-CAAGTAcca
gi|29 : aGGTTTTT------TT--A--TGTT--AAGTATATAATATGGTTG-TAA-TTCTATC--AAAAGGTTAGAATA----AACAGGATTCAT------Aga
gi|3 : ---ATA-ATATCA---T-C----------AGCTGA-G----G-TC-A-TGTTTATTTTGGAGAATTTG-G--GTTTAATTTAGT--AATTTT-----TG-AAAACCGGGGA-TACAT-----AA--GTTATCGATA-TT-GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTT--AAATGT--TGACAATC-------------AAT-AATGAT-AATGTGGTTGT----TA-CATTTA-CGGCATCTAAA-TGCAAGGGGT--------TT--GGGAA-------ATGCACAAGTGGAA---CAAGTAATAG-GGAT----GGGAGTGA-------------CCTGT--TTATTC--ATTTACAAC-
gi|3 : gtttTTATTCATTTACAACC--TG---TTTTAAAAATTG--AAATTTA--AAGCATTTAGTATGGTTG-TAA-TT-TGTCTCCATACGTTAAAA------AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-CG-T-----GAC-AT-GAA-ATCCAATTAA---C-CAAACAAACTGCAGGGGGAA------AACCTG--GCA---------TGCT--ATCG-----TTAT--C--AAACT----GT---------------AAA-TACAC--C-TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACAT------A-AACACT-TGTTAT--AT-------TTAATCTTATTCTGTTGATCATTTCAA--CAT-TACC-CTTT--TTTT---CTTTAAATCATTTTCA------TTT--ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT--C--AAAGTGGGGGTAAAA-CCTCA--GTAAAA-TAC-------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGTTAT-C-T-----T-TTAATTCCAATTTGTTGATCA--AC-AT-TAT-TAG
gi|32 : T-G-CGGCATCTAAAATGCAGGGAGTGGGAGC-G
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TTTTTCAACCAC-AACCGTCTGA--AA---CACAAAC------CA----------------CTG--TAATTT--TTAGTGCT--ATCGGGATTTTTT--C--AAAT--GGGATAAAAGCCTCTGGATAAAA-TGCGC--T-GAAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTT-----CAT------T-AACACTCTGT-AT-CACATAAGTATTAATTCCAATTTGTTGATCA--AC-AT-TATATAGA-CTTC--TTTA---TTT---CATGTTCT-A------TTT--AATT---------TGAGACGCA-TTG--A-ATAATAA-TG---GT----ATAAT
gi|5 : tattcgttcgaTTGA-TA-------TT--TTTG---------------------GGGAAA---------GTAGAGCCA-TT---------G-----A-AC-------------TTT----GGGTACAAA-CGATAGAAG-TCTCGATTCTTCCTTAATCAATCAACTGCT
gi|5 : aatttccctaAAAGTT--------GTTTTGGAAAGTA-TTATATGA-------CACCGTC-CCTCTG---C-------------AT---------TTT-------------AGAATTAATTTTTCAAAAAT-C-ATA-TTT--TTGGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAA-TTTTTACTTTTGAGAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgac---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTG-----G-ACAACTACTAATTTCTTT---TGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCTT-----GCATACATGTACTTG-GTTACGGCCGCACGT--GC--A-CATG--------ATGCA-----GCC---GAGTTCACACCTAATTTTGTAAAAT-ATT--ATGTTCGACCACATAATCACCTTTG---C-------------ATCG-------TTTTTTTTTAAATTTAAGAAATA--CTT-CTAAAATCCTTTATTCTTGTTGGC---ATA-Atgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|7 : gGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGACGA-
gi|7 : ---ATA-ATGTCAA-AT-CG---------AGCT-A-G----G-AC-A-TTATTATTTTGGAGGAT--G-ATAATTTAATTCGGT--ACATGT-AATCTA-AAAATCGGG-A-TACAT----TAATGAGTATCGCTAGTTAGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt------GGAAAATTATCTCACA-ATAATAAACT---------GACTTGG-ACAACAAA-------TTTCTATTGGAACGCA-CGA----GG-TC-TG---CGTGCTTTATCATTCCTCTGCTT-----A-A-----ATACTCG-GCTTCGGTCGCACGT--GC--ACC-----------------TT---------------------ATTTTGTAAAAT-ATTA-CT-ATTGATGACACAATCACCTGTGGGTCAATTTTTTTTTAAAT---------TTT-------------AGAAATA--TTTA-TAAAATCC-TTATTTT--TTTGC---ATA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattat-GAA-TTCTGA-TAATAAC-CAAAC------TGC----AG------A--TTC--GCATTT--TTAGTGCT--ATCT----TTTTTT-C--AATATGGGGGTAAAA-CCTCT--GTAAAA-TGCAC--C-CAGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT------------------ACACT-TGTCAT-CA-------ACTCATTCCAATTATTTGATCA--ACATTCTAT-CA---CTTA--TTTGCTTTTT---ATTACTTT-AAATCATTTT--CATT---------TGAGACGCA-TTA-AA-ATAATGA-AGGCAGT----ATAATGTA--ATCAA
blockSeqs : ATAATAT T T A TA TCAGC TT TC A AA A . G T . T C ATTCTGATTTACACG T A AGCTGAATTTTAATCAGTCAAGATCGAATTAC T GT AGCTGACTTGGACAACTACTAATTTC CTAT GT G TAGA . T ATT GCATACATG T . ACATGATGCAGCTGAGCTCACAACCAA T ATTATA T GGTCAATTTTTTTTTAAATTTT AT TC TT T TG T ACG G T . ACGTATGTT G C TCCT CA AA T TTGG A . TGAGTTTG G . . T AGTCA T . A . T T . T GC TTATATAGGAAA . . T TACG G T . TGTTCC G CACAAAT C AGA AGGCGAGTAAAAGGAGGGGGGTG TT T CA CNNNNNNNNNNN TAA GAAAA . . . ATT G C A G AAAAA GAAA CA . T G TCC T C AAAAAC ATTCTAATTGTTGCATGGAACAAACAG T C . A . T TC CT A T CACCTTTT G CATTTTCAGGA GA . A A AG T GTT A T . TT AT . A C . . . A TTTT C . CCG T ATAA A AAACTGCAGGGGGAAAAC CA C CAT GC GGATT TT . A G AG TGG A GCAG AATCATAGCAATAGG T A A C ATTACAGGT C ATCACATAAGTA TT ATTC A GAA CA CTT TAA C T C AATCAT TA ACTTCTATC . AAA AGG . .
blockSeqs : . T . ATTCTG . . TTAATCAGTCAAAAATGAT C C GACTTGGACAACAAA T GT T . . . . TCTGAGTAA . . CTATGATGGAGCTGAGTTCACACCTAA T ATTAC G CATCGTTTTTTTTTAAATTTA . C A T . T . . . . . G . . C A T AAG A . TAATCTA . . . C AGTTA T . . . . T . G . C . . . . . . . CTGTT G CACAAAT C GTG AAGTTGAAAGGGAGAGGGGGG AT T TA GCAGACTTAA . . . . . NNN N . . G G AA . . . C C A A TA ATT T . . . . . . . G . AC G T AG . A . G . GTA . . . TA T . A C . . . . TT . . AA . T . CAAACAGCAGA . C TT . T T . T T A A . ACC ATTCATAAAATGGTT T A . . TATAACATA . TATCTT . AT . CC . . . T T . . . . . AA TG .
blockSeqs : . TTTTTG C A GAAC T GA A . . . . GCATACATG . . ACATGATGCAGCCGAGTTCACACCTAA G ATTA C CATTTTTTAAAATTT . C A T . T . . . . . . . . A A C GGG A . TTG . . . T ATT T . . . . . . A . . . . . . . . . TTG G AACAAAT A AA GGATGGGAGTGA GT T CA CCT . . . . A . . . . A A G TA . . . . . . . . C . C . T T . . . G . T . . . T . . . . . . . . CT . . AA . T . CAAACAACAGA . C TT . G . . T G A A . ACC CAATATATAGAACGA T A . . CATTA . CATCAA . AA . GA . . . T T . . . . . A . .
blockSeqs : . A GAC T A A . . . . GCA . . ACCTTA G ATTA T CATTTT . C A T . T . . . . . . . . A C T GAT . . G . . . . . . . . . . . . T . . . . . . . . . . A G GGAGGGGGTGA T A A . A . . . . A T C . . . . . CT . . AA . A . TGCAGA . C T . G . . G G A A . GCT CATTATAGAAAGA T A . . CATT . TCATT . AT . . . . . . C . . .
blockSeqs : . T T . . . . AAA . . T ATTA G . A T . . T . . . . . . . . T A . G . . . . . . . . . . . . . . A A GGATGGGGTGA . A C . . . . AA . A . AAAA . A T . T . . C G A T . ACC TGTAA C . . . . . TATTA . AT .
blockSeqs : . T A . . . . AAA . . T ATTA . A T . . . . . . . . . . . A A . . . . . . AT . A . CAAA . C . . T . . G G . . . AC CATT . . . . . TATAT .
blockSeqs : . . . . G . . . CA . . . . . . . T . . . . . .
blockSeqs : . . . . A . . . .
blockSeqs : . .
blockSeqCons : A* GACAC*************************** N* GCATACATG***** ** ACATGATGCAGCCGAGTTCACACCTAA******************* ATTA*** CGTTTTTTAAATTT****************************** C* A** ** TGACTG*** **** ** ** TG****** AGGCGGAGGGAGGGGGTGA*********** NT** CA* G**** GA** A** A***** CAAAGCAGA*************** TT** ** *** ACC*** CATTA*********** TATTN********* AT** **
originalCons : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACGCATAGTAAACT---------G-----G-AC-------------TTT---TGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTT-----GCA-----ATACTCG-GTTACGGCCGCACGT--GC--ACCATG--------ATGCA-TT--GCTTAAAAGTT------TAATTTTGTAAAATAATTA-ATGATCGACCACACAGTCACCTNTG---C-------------AT---------TTT-------------AGAAATA--TTTACTAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-AC-A-TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTT-AGTTTG-AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGC-GTTCCGGGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGNT----GGGAGTGA---GAGGGGGG-GCCTGT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTT--AAATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATC--AAAACGTTAGAATA----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAAC------CA-----AA------A--CTG--GCATTT--T-AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTT-----CAT------T-AACACT-TGTTAT-CAT-----TATTAATTCCAATTTGTTGATCA--ACAAT-TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
finalCons : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACA-ATAGTAAACTGACAC---------------------------TTT---TGGGTACGCN-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCTTGCATACATG-----TACTCG-GTTACGGCCGCACGT--GCACATGATGCAGCCGAGTTCACACCTAA-------------------TTTTGTAAAATATTA---TGATCGACCACACAGTCACCTNTGCGTTTTTTAAATTT------------------------------AGAAATA--TTTC-TAAAATCC-NTATTTT--TTGGC---ATA-ATGTCGA-GT-CG---------AGCT-A-G----G-ACA--TTTTTATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTTGACTG---AAAATCGGG-A-TACAT----TAACGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTA--AAANAT--TGACATTTT-------GGAGAAAT-AATGAT-AATGTGGT-GT----TA-CATT-A-CGGCATCTAAAATGCAGGGGGTGGGAGTG------GGAACACAAATATGCACAAATGGAA-G-CAAGTAATAGAGGCGGAGGGAGGGGGTGA-----------CCTNT--TTNTTCA-ATTTACAAC-GCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATT-ATTT-TGAGAA-ATTGAGATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTTGA--ATGTT--AAGCATTTAATATGGTTG-TAA-TT-TATCA--AAACGTTAGAAA-----AACAGGATTCAT------ATT------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAA---C-CAAACCAAAGCAGA---------------CTG--GCATTTTT--AGTGCT--ATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCACC---TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTTCATTA-----------AACACT-TGTTATTN---------TTAATTCCAATTTGTTGATCA--ACAT--TAT-TAGA-CTTT--TTTA---TTT---ATTATTTT-A------TTT--AATT---------TGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111111111111 111111111111111 111111111111111111111111
lowQualScore : 3333333 11 33333 11 2222 1 1 1 333333 555555555555555 1 1 333333333333333333333333333333333333 11 111111111111111111111111111111111111 111 11 1111 111 33333333 1111 33333333333333333 11111111 444444444444444 11111111111 1 222222222 1 1111 333333 1 555555555 22222 11111 1 11 11 11 99999999999999 1 111111 33333333333 22222222 33333333333 000000000000000 1111 22222222222 111 22222 111 1 1 33333333 11 33333 1 1111 1 111 2222222 222222222222222222222222 1 1 1 1 1 11 11 1 33333333 44444444444 111 1 1 1 1111 1 111 22 11 111 1 11 1111 555555555555555 111111 11111 11 222 1111 222222222222222222222 22222222222 111111 4444444444 11111 111111 11 111 11111 555555555555555555555 1 1111 2222 2222 11
lowQualScore : 3333333 1 1 1 88 33333 44 4444 1 22 5 5 1 1 5 222222 6 444444444444444 3 3 888888888888888888888888888888888888 00 111111111111111111111111111111111111 000 33 66 2222 5 5 000 0 0 888 0 77777777 1 5 4 0 2222 99 11111111111111111 88888888 1 5 5 4 0 1 222222222222222 99999999999 5 66 77 5 777 4 5 5 222222222 1 5 2222 66 5 5 0 1 222222 1 99 000000000 6 6 00000 88888 0 8 8 11 8 0 0 11 1 11 55555555555555 0 6 6 777777 6 5 0 33333333333 8888888 00000000 4 22222222222 666666666666666 88 4 1 0000 1 666 88888888888 777 55555 777 3 3 22222222 6 7 11 00000 6 7777 8 6 8 999 1 3 5 7777777 7 888888888888888888888888 3 0 0 9 0 0 33 33 1 0 88888888 2 55555555555 666 0 3 0 99 0 3333 8 8 0 111 33 33 3 444 0 33 8 6 2222 5 5 666 5 3 5 0 444444444444444 0 000000 3 33333 00 66 1 1 0 66 555 4 2 8888 0 0 555555555555555555555 1 2 5 5 5 5 99999999999 5 333333 3333333333 888 22222 5 66 111111 11 444 55555 3 8 222222222222222222222 0 4444 4444 1111 88
lowQualScore : ....... . . . .. ..... .. .... . .. . . . . . ...... . ............... . . .................................... .. .................................... ... .. .. .... . . ... . . ... . ........ . . . . .... .. ................. ........ . . . . . . ............... ........... . .. .. . ... . . . ......... . . .... .. . . . . ...... . .. ......... . . ..... ..... . . . .. . . . .. . .. .............. . . . ...... . . . ........... ....... ........ . ........... ............... .. . . .... . ... ........... ... ..... ... . . ........ . . .. ..... . .... . . . ... . . . ....... . ........................ . . . . . . .. .. . . ........ . ........... ... . . . .. . .... . . . ... .. .. . ... . .. . . .... . . ... . . . . ............... . ...... . ..... .. .. . . . .. ... . . .... . . ..................... . . . . . . ........... . ...... .......... ... ..... . .. ...... .. ... ..... . . ..................... . .... .... .... ..
lowQualScore : 5555555 0 0 0 55 33333 77 0000 0 00 5 0 0 0 5 888888 7 333333333333333 3 3 000000000000000000000000000000000000 88 222222222222222222222222222222222222 000 99 77 1111 7 7 000 7 7 888 7 99999999 7 7 9 7 1111 22 77777777777777777 11111111 3 7 7 3 7 0 888888888888888 88888888888 7 77 99 4 000 0 0 7 999999999 4 7 1111 00 7 7 1 4 222222 3 22 888888888 7 7 66666 88888 6 0 0 00 0 8 8 00 0 00 22222222222222 0 7 7 777777 7 7 1 33333333333 7777777 88888888 2 66666666666 222222222222222 33 2 0 0000 0 888 88888888888 555 00000 555 3 3 33333333 7 3 22 22222 4 0000 0 0 0 666 4 2 0 0000000 3 333333333333333333333333 2 0 0 0 0 0 88 88 0 0 22222222 5 88888888888 222 0 2 0 00 0 5555 0 0 0 000 88 88 2 000 0 88 0 7 0000 7 0 222 0 6 0 2 888888888888888 2 666666 2 88888 66 11 0 1 9 22 666 4 8 4444 1 1 111111111111111111111 4 3 0 7 7 2 00000000000 7 111111 4444444444 888 55555 0 99 666666 00 000 88888 8 0 888888888888888888888 0 2222 8888 2222 00
consensus : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACG-ATAGTAAACT----------GAC-----------A-----------CTT---TTGGGTACGCA-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCT---TGCATACAT-GTACTCGGTTACGGCCGCACGT-GCACATGATGC----AGCCGAG-TTC------ACA--------CCTAA--------TTTTGTAAAATA-TTA-TGATCGACCACACAGTCACCTNTGCA------T-------TTTTTA-AA-TTT-AGAAATATTT-CTAAAATCC-NTATTTT--TTGGCA---TA-ATGTCGA-GT-CGA---------GCT-A-G----G-ACA-TTTTT-ATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTTGA--TTG-AAAATCGGG-A-TACATTAA----CGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA--AANAT--TGACATTTT-------GGAGAAATAA-TGATAA-TGTGG-TGTTA-C----A-TTA-CGGCATCTAAAATGCAGGGGGTGGGA---GTG-----GGAACACAAATATGCAC------A-AATGGA-------G-G-CAAGTAATAG-------------AGGGA-GGGGGTGACCTGT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATTA-TTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTTAAATGTT----AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAACGTTAGAATA-----AACAGGATTCATATT------------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAAC-CAAACCAAAC-GCAGA--------CTGGCATTTT-TAGTGCTATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCGC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTTCAT----TA-----AACACT-TGT----T-AT-------TA-TTAATTCCAATTTGTTG---A-----TCAAC-ATT--AT-TAG-ACTTT--TTTA---TTT---ATTATTTT-A------TTT-A----------ATTTGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
Reference ( family-7599 ) : NNNGGAACCTGAATTTTATAATATTGNTNCATTTCTTTATTNGTTAAATTATATAGATGAACCATTCGG-----CGATAATCTTAAGTTGCGAAATGTCAAGTCAAANCGATAAGCNNTTATCATCATCTNTCANCCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATT---TTACTCCTACACGAAGAATAGCAAATATTCTG---------TTT-ACTTGA-TA-------TT--TTAGTC----------GAA------GGGAAATTATTTCACA-ATAGTAAACT----------GAC-----------A-----------CTT---TTGGGTACGCN-CGA----GG-TC-CG---CGTGCTTTATCAATCAACTGCT---TGCATACAT-GTACTCGGTTACGGCCGCACGT-GCACATGATGC----AGCCGAG-TTC------ACA--------CCTAA--------TTTTGTAAAATA-TTA-TGATCGACCACACAGTCACCTNTGCG------T-------TTTTTA-AA-TTT-AGAAATATTT-CTAAAATCC-NTATTTT--TTGGCA---TA-ATGTCGA-GT-CGA---------GCT-A-G----G-ACA-TTTTT-ATTTTGGAGAAT--G-G-AGTTTAATTCGGT--AATTTTGA--CTG-AAAATCGGG-A-TACATTAA----CGATTATCGCTAGTTAGCAAATAGTGGAT-ATTGTTAT-TTT--T-GGTAGAGATTTAA--AANAT--TGACATTTT-------GGAGAAATAA-TGATAA-TGTGG-TGTTA-C----A-TTA-CGGCATCTAAAATGCAGGGGGTGGGA---GTG-----GGAACACAAATATGCAC------A-AATGGA-------A-G-CAAGTAATAGA-------GGCGGAGGGA-GGGGGTGACCTNT--TTNTTCA-ATTTACAACGCAGACTTGAGTTCAAG---GTTT-----TTTTTA---ATTA-TTT-TGAGAA-ATTGAG-ATTGTTCGTTCACAGCAAGTGGGTTTTTG----TTTGAATGTT----AAGCATTTAATATGGTTG-TAATT-T-ATC--AAAACGTTAGAA-A-----AACAGGATTCATATT------------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTGCCGAC-CGCAAT-ATA-TT--CACAC--CTTNCTACCA-GTCAGA-AC-----CTTGTGGC----------GAACCC-G-GGTCG-CTGACCACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TCT--CAAC-AC-GAA-GTCCGA-TAAC-CAAACCAAA--GCAGA--------CTGGCATTTT-TAGTGCTATCG----TTTTT--C--AAANTGGGGGTAAAA-CCTC---GTAAAA-TGCAC--C-TAATTCATC-A-T-T-ATAG-AAC-GA--TTTTAAAAATATATATTT-TATT-TCCGTTCAT----TA-----AACACT-TGT----T-AT-------TN-TTAATTCCAATTTGTTG---A-----TCAAC-ATT--AT-TAG-ACTTT--TTTA---TTT---ATTATTTT-A------TTT-A----------ATTTGAGACGCA-TTG-AA-ATAATAA-AGGCAGT----ATAATGTAACATCAA
gi|1 : GGAATCTGAATTTT-------TGGTGCATTTCTTTATTTGT--AATTATATAGATGAACCATTCGG-----CGATAATCT-AAGTTGCGAAATGTCAAGT-AAACCGATAAACCTTT-TCATCATCTTTCAATCTGATGAACAGAATTTTATTTTGTATTACGTGGAAATCGGCGAAAAAAGCGACTGCGAATTAAATTACTCCTACACGAAGAATAGCAAAT---------------TTT-ACTTGA-TA-------TT--TT--TT----------G--------GGGAAATTATTTTACGCATAGTAAACT----------GGT-----------A-----------CTT---TCGGGTACGCAACGA----GGATC-CG---CGTTCTTTATCAATCAACTGCT---TTCA------ATA-TCGGTTACGGTCGCACGT-----------C----AGCCGACCTTCTTACAAACATGCATTTGCTTAAAAGTTTGTTTTTGGAAAGTAATTAATGATCGACCACACAGTCACCTGTGCA------T-------TTT-----------AGAAATATTTATTAAAATTC-ATATTTT--TGGGCA---TA-ATGTCGA-GTACGA---------GCT-A-G----G-GCA-TTTTTTATTTGTGAGATT--G-ACAGTT--ATTCGGTTAAATTTTGAGTTTGCAAAATCGGG-ACTATATTAAATAACGATTATTGTTGCTGATTAAGTAG-GGATGATTGTTAT-TTTGGT-GGTCGAGATTTAATAAAAAT--GGCCATTTTCATATAAGAAGAAATAAATGATAAATGTGG-TGTTA-A----A-TTATCGGCATA-AAAATGCAGGGAGTGGGA---GTGTTCCGGGAACACAATAATGCAC------A-A-TGGA-------A-GGCAAGTATTAGAAGTTGGGGGGGGGGGGG-GGGGGGGGGTTGTGGTTGTTAATGTTTACAAT-CAGAGTTG---TCAAG---TTTT-----TACTTAGAGATTAATTTATGAGAACA--GA--ATTATTCGTTCACAGTAAGTGGGTTTTTG----TTTAAATGTT----AGGCATTTGATACGGTTGCTAATT-T-ATCA-AAAATGTTACAA-A-----AACAGGATTCATA-T------------------------TCCTACCACAAACGTCGCTTTGCTAT-CGTGCCGACGCGCAATAATA-TT--CACAC--TTTTCTACTA-GTCAGA-ACG----CTTGTGGT----------GAACCC-G-GGTCGCCTGACTACCA-CTAGGTTCTA-TTG-T-GCGAAA-GA-CCTTGTTGAA-T-TTGCA--TAGGAAATATATCAAAGCTCATCTATTTTATCTATA-TAT--CAAC-ACAGAA-GTCTGA-TAAC-CAAACCAAA------A--------CTGGTA-TTT-TAGTGCTATCG----TTTTT--CAAAAAATGGGGATTAAA-CCTC---GTAAAA-TGCGCTTT-TAATTCATCTA-TAT-ATAG-AAC-GA--TTTTATAAATACATATTT-CATT-TCCATTCAT----T------AACACT-TGT----T-ATCCATAAGTA-TTAATTCCAATTTGTTG---A-----TCAACAATT--AT-TAG-A-TCT--TTTA---TTT---ATTA-TTT-A------TTTGA----------ATTTGAGACGCGCTTG-AATATAGTAAGAGGCAATGATAACAATATAACATCAA
gi|10 : tatA---TA-ATGTCGA-GT-CGA---------GCT-ACG----G-CCA-AGTTT-ATTTTGGAGAAT--AAG-AGTTTAATTCGGT--AATTT-------G-AAAATCGGG-A-TACATTAA----TGCTTATCGCTAGTCAGCAAATAGTGGAT-ATTGTTATATTT--T-GATAGAGA-TTAA--AATAT--TGACg
gi|11 : atgatattagaaatgtgtatttgtggtgatactctttccttaagaatgatttgttgttgttgagaatttgataagatatgcggcaatacaatt-GA-CCTT-TTGAA-T-TTGCA--TAG--AATATAC--AAGTT-ATC--TTTTGTCT-TAATTT--CAAC-AC-TA--GTCTAA-TA-T-CAAAC-AAA------A--------CTGGCATTTCATAGTGC-ATCG----TTTTTTTC--AAAATGGGGATAAA--CCTC---GGAAAAATGCGC--AGTAATTCATC-A-T-T-ATAG-AAA-GA--TTTTAAAAATGTATATTT-TATT-TCCGTTCAT----TA-----AATACT-TGT----TCAT-------T--TTAATTCCAATTTGTTG---A-----TCAAC-ATT--
gi|12 : -TCT--CAAC-AT-GAA-ATTCGA-TATC-CAAATCAAACAGCAGA--------CTGACATTTA-TGCTGC-ATCA----GTTTT--C--AATTTTGGGTTAA----------GTAAAA-TACAC----TATTTCATA-A-T-C-ATAGCAATAGG--TTTTAA---TATAT-TTT-CATTCTCCGTT-AT----TACAGGTAACACT-TGT----T-AT-------TA-TTAACTCCAATTCGTTGATCA-----TCAAC-ATT--
gi|13 : CAACTGCT---TGCATAC-------TCGGTTACGGCTGCACGT-GCACATGATGC----AGCTGAG-CTC------ACA--------ACCAA--------TTTTGTAAAATA-TTA-TCATCGACCACATA
gi|14 : GA-------A-GACAAGTAATAG---------------GGA-GGGGGTGACCTTT--TTTTTCA-ATTTACAAC-----CT---GTTCAAGTAAGTTTGAAAATTTTCA---Ataattcttattttttggcatagtaatgaaaactcactcaaaaaacattaccccaaaaattgaaagccga
gi|14 : tacggtatctacaatacaggtggtgaG----TTTGAAAATTTTCAAAGCATTTAGTATAGTTG-TAATTGT-CTC--CATACGTTAGAA-AAAAACAACAGGATTCATAagcatttagtatagttgtaattgtctccatacgttagaaaaaaacaacaggattcata
gi|15 : tacggtatctacaatacaggtggtgagaagacaagtaatagggagggggtgaccttttttttcaatttacaacctgttcaagtaaT---TTGGA-ACGCG-CAA----GG-TC-CA---CGTGCTTTATAGATCAACTTCT---TAAATA-ATCGTTTTT--TT---GTCGCACGT-GCCTATGATGG----AGCTGAG-TTC------ACA--------CCTAA--------TTTTGTAGAATA-TTA-TGATCGACAACACAATCACCTTTGC
gi|16 : -----GGAACACAAATATGCAC------C-AATGCACAACTCAG-G-CAAGT--TGAA------------AGGGA-GAGGGGGGC---T--TTTTTTA-TTTTACAA-GCAGACTTAAGTTCAAG---GTTT-----TTTTTA---ATTA-TTT-TGAGAA-ATTGAG-ATTGTTCGTTCa
gi|17 : ttcc-----------CTT---TTGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCT---TGCATACAT-GTACTTGGTTACGGCCGCACGT-GCACATGATGC----AGCCGA
gi|19 : acttggacaactactaattt-TTT-AGAAATATTT-CTAAAATCC-ATATTTT--T-AGCA---TA-ATGTCGA-GT-CGA---------GCT-A-G----A-ACA-TTTTT-A-TTTGGAGAATG-G-G-AGTCT--TTCGGT--AAT--------------ATCGGG-A-TACATTAA----
gi|2 : CTGCGA--T---TTACTC-TACACGAAGAATAACAAATATTCTGATTTACACGTTT-ACTTGAATA-------TTAATCAGTC----------AAAAATGATGGAAAATTATTTTACC-ATAGTAAACT----------GAC-----------------------------TTGGGTACGCA-CGA----GA-TC-CG---CGAGCTTTATCAATCAACTGCTTTCTGAGTA----ATACTCGGTTAGGTCCGCCCGTGGCAGCCGACCCCGAGAGCCGAC-CTC------AAA--------CCTAA--------
gi|2 : --------TTTTGGAAAATA-TTA-TGATCGACCACACAGTCACCTGTGCA------T-------TTTTTA-AAATTT-AGAAATATTT-CTAAAATCT-ATATTTT--T-GGCA---TA-ATGTCGA-GT-CGA---------GCT-A-GTCCTG-ACC-TTTTT-ATTT-GGAGAAT--G---AGTGT--TTCGGT--AATTTTGAGTTTG-AAAATCGGG-A-TACATTAA----CGATTATTGCT-----GCTATTAGTAGAT-ATTGTTAT-TTT--T-CGCAGAGATT-AA--AAGAA--TGGCATTTTATATA--GGAAAAATAA-TGATAA-TGTGG-TGTTA-CGTACA-TTA-CGGCATCTAAAATGCAGGGAGTGGGA---GTGTTCC-GGAACACAAATATGCACCTATGCACAATGGA-------G-G-CGAGTAAAAG------------GAGGG----GGGTG-CCTAT--TTT---A-ATTTACAACNNNNNNNNNNNNNNNNN---NNNN-----NNNNNN---NNNN-NNN-NNNNNN-NNNNNNNATTGTTCGTTCA-AGCAAGTGG-TTTTT-----TTT-AATGTT----AAGTATTTAATATGGTTG-TAATT-TTATC--AAAAAGTTAGAATA-----AACAGGATTCATATT------------------------TCCTATCACAAACGTCTCTTTGCTAT-CGTACCGAC-C-CAAT-ATATTT--CACAC--CTTACTACCA-GTCAAA-AC-----CTTGT-GT----------GAACCC-GAGGTCG-CTGACCACCA-TTA-GTTCTA-TTGTT-GCGATA-GA-actacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtttttggaaaatattatgatcgaccacacagtcacctgtgcattttttaaaatttagaaatatttctaaaatctatatttttggcataatgtcgagtcgagctagtcctgacctttttatttggagaatgagtgtttcggtaattttgagtttgaaaatcgggatacattaacgattattgctgctattagtagatattgttatttttcgcagagattaaaagaatggcattttatataggaaaaataatgataatgtggtgttacgtacattacggcatctaaaatgcagggagtgggagtgttccggaacacaaatatgcacctatgcacaatggaggcgagtaaaaggaggggggtgcctattttaatttacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttcgttcaagcaagtggttttttttaatgttaagtatttaatatggttgtaattttatcaaaaagttagaataaacaggattcatatttcctatcacaaacgtctctttgctatcgtaccgacccaatatatttcacaccttactaccagtcaaaaccttgtgtgaacccgaggtcgctgaccaccattagttctattgttgcgataga
gi|20 : ctgcgatttactctacacgaagaataacaaatattctgatttacacgtttacttgaatattaatcagtcaaaaatgatggaaaattattttaccatagtaaactgacttgggtacgcacgagatccgcgagctttatcaatcaactgctttctgagtaatactcggttaggtccgcccgtggcagccgaccccgagagccgacctcaaacctaaactacatgcacatgtgtatattgcaacatgctttcttaaaagtttgtATAA-TGTGG-TGTTA-C----A-TTA-CGGCATCTAAA-TGCAAGGGGTGGGA---A------------------ATGCAC------A-AGTGGA-------A-A-CAAGTAAT---------------AGGGA-TGGGGTGACCT-T--TTATTCA-ATTTACAAC
gi|21 : AC-AT-GAA-ATTCGA-TATC-CAAATCAAACAACAGA--------CTGACATTTT--AGTGCTATCG----GTTTT--C--AATTTGGGGTTAAAA-CCTCA--GTAAAA-TACAC--C-TAATTCAct
gi|22 : TTGTTG---A-----TCAAC-ATT--AT-TAGAACTTTCATTTA---CTT---A-TATTTT-AC-----TTT-AAATTACTTCTATCTGAGACGCA-TTGAAA-ATAATAA----CAGT----GTAAT
gi|23 : CTATCCGGTCAGCCGATGTTCTTAAGTTGCGAAATGTCA--TCAAAACGATAAGCAATTATCAT-ATCTGTCATCTTGATAAACAGAA-TTTATTTca
gi|24 : GAAACCTGAATTTTATAATATTATTTCATTTCTTTATTAGTTAAATTATATAGATGAACCATTCGG-----CGATAATC-TAAGTTGCGAAATGTC
gi|25 : tgTTAT-TTT--T-GGTAGAGATTTAA--AAAATGCTGACATT--------------AATAA-TGATAA-TATTG-TGTTA-C----A-TTA-CGGCATCTAAAGCGCAGAGGGTGGGA---
gi|26 : -TA-TCT--CAAC-AT-GAA-AATCGA-TAAC-CAATCCAAACTGCAGA--------CTGTCAT--------GCTATCG----TTTTT--C--AAAGTGGGGGTAAAA-CATCA--GTAAAA-tg
gi|27 : ATCA-TGTGG-TTCTAGT----A-TTA-CGGCATCTAAAATGCCAGGGATGGGGACTGTT-----GGAAAACAAATAT-CAC------A-AATGGA-------GTG-CAAGTAcca
gi|29 : aGGTTTTT------TT--ATGTT----AAGTATATAATATGGTTG-TAATTCT-ATC--AAAAGGTTAGAATA-----AACAGGATTCATAga
gi|3 : A---TA-ATATCA---T-C-A---------GCTGA-G----G-TCA-TGTTT-ATTTTGGAGAATTTG-G--GTTTAATTTAGT--AATTTT-----TG-AAAACCGGGGA-TACAT-AA------GTTATCGATA-TT-GCAAATAG-GGAT-ATTGTTAT-TTT--TTGATAGAGATTTTA--AATGT--TGACAATC-------------AATAA-TGATAA-TGTGGTTGTTA-C----ATTTA-CGGCATCT-AAATGCAAGGGGT-------TTG-----GGAA-------ATGCAC------A-AGTGGA-------A---CAAGTAAT---------------AGGGATGGGAGTGACCTGT--TTATTC--ATTTACAAC
gi|3 : gtttTTATTCATTTACAACC--TG---TTTTAAAAATTGAAATTTA----AAGCATTTAGTATGGTTG-TAATT-T-GTCTCCATACGTTA-AA-A-----AACAGGATTCATATTCTAATTGTTGCATGGAACAAACAGTCTTATCACAAACACCTCCTTGCTATCCGCGCCGAC-CAAAAT-ATA-TTTCCACACCTCTTGCTACCATTTCAGACACCTTTTCTTGCGGCATTTTCAGGAAAACCCAG-GGTAG-CTGACCCTAA-CAAAGTTCTATTTG-TAGCGAAA-GATCCCT-GGGAATT-TTGCAT-TAG--AAT------AATTT-ATA--CACAGTCT-CG-T-----GAC-AT-GAA-ATCCAATTAAC-CAAA-CAAACTGCAGGGGGAAAACCTGGCA--------TGCTATCG-----TTAT--C--AAACT----GT---------------AAA-TACAC--C-TAATTCAT--A-T-TCATAA-AAT-GGTTTTTTAAAAATATAT-------TT-TCCATTTATAACATA-----AACACT-TGT----T-AT-------AT-TTAATCTTATTCTGTTG---ATCATTTCAAC-ATT--AC-C----CTTT--TTTT---CTTTAAATCATTTTCA------TTT-ctgttttaaaaattgaaatttaaagcatttagtatggttgtaatttgtctccatacgttaaaaaacaggattcatattctaattgttgcatggaacaaacagtcttatcacaaacacctccttgctatccgcgccgaccaaaatatatttccacacctcttgctaccatttcagacaccttttcttgcggcattttcaggaaaacccagggtagctgaccctaacaaagttctatttgtagcgaaagatccctgggaattttgcattagaataatttatacacagtctcgtgacatgaaatccaattaaccaaacaaactgcagggggaaaacctggcatgctatcgttatcaaactgtaaatacacctaattcatattcataaaatggttttttaaaaatatattttccatttataacataaacacttgttatatttaatcttattctgttgatcatttcaacattaccctttttttctttaaatcattttcattt
gi|30 : gtttataatatcatcagctgaggtcatgtttattttggagaatttgggtttaatttagtaatttttgaaaaccggggatacataagttatcgatattgcaaatagggatattgttattttttgatagagattttaaatgttgacaatcaataatgataatgtggttgttacatttacggcatctaaatgcaaggggtttgggaaatgcacaagtggaacaagtaatagggatgggagtgacctgtT--C--AAAGTGGGGGTAAAA-CCTCA--GTAAAA-TAC-------------TC-A-T-T--------------TTTCAAAA--ATGTATTT-TCTT-TTCGT
gi|31 : CT-TGT----T-ATC------TT-TTAATTCCAATTTGTTG---A-----TCAAC-ATT--AT-TAG-
gi|32 : TG-CGGCATCTAAAATGCAGGGAGTGGGA---GCG-----
gi|4 : ATAACCGTCTCTT--CTAT-CGTGTCGAC-C-CAAT-ATA-TT--CACAC--CTTCTTACTA-GTCAGA--C-----CTTGTGTT----------GAACCC-T-GGTCG-CTG-CTACCAACTAG-TTCTA-TT--T-GCGAAAAGA-CCTT-TTTGA-TATTGCAATTAG--AATATAC--AAGCT-ATC--TTTTGTCT-TA-TTTTTCAACCAC-AACCGTCTGA--AACACAAACCA-----------------CTGTAATTTT-TAGTGCTATCGGGATTTTTT--C--AAAT--GGGATAAAAGCCTCTGGATAAAA-TGCGC--T-GAAT-CATC-AATAT-ATAG-AAC-GA--TT--AAAAATACATATTTATATT-TC-GTTCAT----TA-----A-CACTCTGTATCAC-ATAAG----TA-TTAATTCCAATTTGTTG---A-----TCAAC-ATT--ATATAG-ACTTC--TTTA---TTT---CATGTTCT-A------TTT-A----------ATTTGAGACGCA-TTG--A-ATAATAA-TG---GT----ATAAT
gi|5 : tattcgttcgaT---TTGGGTACAAA-CGATAGAAG-TCTCGATTCTTCCTTAATCAATCAACTGCT---
gi|5 : aatttccctattgatatttttggggaaagtagagccattgaac--------TTTTGGAAAGTA-TTA-T-----ATGACACCGTC-CCTCTGCA------T-------TTT--AGAA-TT-----AATTTTT-CAAAAATC--ATATTTT--T-GGCACGATAGATGTCGATGT-CAACGTATGTTAGCTGA-G----GCACAATTTTT-ACTTTTGAGAcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttgttttggaaagtattatatgacaccgtccctctgcattttagaattaatttttcaaaaatcatatttttggcacgatagatgtcgatgtcaacgtatgttagctgaggcacaatttttacttttgagatgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|6 : aatttccctattgatatttttggggaaagtagagccattgaactttgggtacaaacgatagaagtctcgattcttccttaatcaatcaactgctcctatttcatagctgcattggttcttcgtgtacgcacgtttgctagtcaataccatgtgtactttagtagcgacttaactatttttttcgtaatgacaaagttg---TTAATTCTATACGAAGAGTAGCATATATTCTG---------TTTTACATGT-TAAGCTGAATT--TTAATCAGTCAAGATCGAATTAC--GGGAAATTATTTCACA-ATAATAAACTAGCTGACTTGGAC-----------AACTACTAATTTCTT---TTGG-TACACT-TGA----AG-TC-CT---CTTGCTTTATAAATCAACTGCT---TGCATACAT-GTACTTGGTTACGGCCGCACGT-GCACATGATGC----AGCCGAG-TTC------ACA--------CCTAA--------TTTTGTAAAATA-TTA-TGTTCGACCACATAATCACCTTTGCATCGTTTT-------TTTTTA-AA-TTTAAGAAATACTT-CTAAAATCCTTTATTCTTGTTGGCA---TA-Atgtattgaatcttgtttcaagcacaaattggaagaatgtttgagtactgtaatgatattgttgctattagta
gi|7 : gGAAATATTT-ATAAAATCC-TTATTTT--TTTGCA---TA-ATGACGA-
gi|7 : A---TA-ATGTCAA-AT-CGA---------GCT-A-G----G-ACA-TTATT-ATTTTGGAGGAT--G-ATAATTTAATTCGGT--ACATGTAAT-CTA-AAAATCGGG-A-TACATTAA----TGAGTATCGCTAGTTAGCAAATAGTGGAT-AATGTaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaattataatgtcaaatcgagctaggacattattattttggaggatgataatttaattcggtacatgtaatctaaaaatcgggatacattaatgagtatcgctagttagcaaatagtggataatgtaa
gi|8 : gaaatatttataaaatccttatttttttgcataatgacgaaaactccatcaaaaatttaaagccgagcaatttatcagttacgaaaactatttaaaaatatatattcgaaatgatttattgtggtggaaagattatatttgcaaagataaagtgtggatttatttgatcgggtcagcttataatcagtgtggcaatacaatt------GGAAAATTATCTCACA-ATAATAAACT----------GACTTGGACAACAAA-----------TTTCTATTGGA-ACGCA-CGA----GG-TC-TG---CGTGCTTTATCATTCCTCTGCT---TAAATAC-------TCGGCTTCGGTCGCACGT-GCAC----------------------------------------CTTA--------TTTTGTAAAATA-TTA-CTATTGATGACACAATCACCTGTGGG------TCAATTTTTTTTTA-AA-TTTTAGAAATATTT-ATAAAATCC-TTATTTT--TTTGCA---TA-ATGaa
gi|9 : caattctattttacacgtttagctgaatagtactcattcaagaattat-GAA-TTCTGA-TAAT---AACCAAACTGCAGA--------TTCGCATTTT-TAGTGCTATCT----TTTTTT-C--AATATGGGGGTAAAA-CCTCT--GTAAAA-TGCAC--C-CAGTTC--------T-GTAA-----------TTAAAAATG-ATATTC-TGTT-TCCGT----------------ACACT-TGT----C-AT-------CAACTCATTCCAATTATTTG---A-----TCAAC-ATTCTAT-CA---CTTA--TTTGCTTTTT---ATTACTTT-AAATCATTTT-C----------ATTTGAGACGCA-TTA-AA-ATAATGA-AGGCAGT----ATAATGTA--ATCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCGACTGTGAATAAATTCTACTAGAAGAGTTAGCATTATTCTTTTTTACACATTTACTTGAAAATCAGTCAGTCAAGAATTTATGGAAAAAATATTTTACTTT
Unaligned ( gi|28 ): ATGTATTTTCTTTTCGTTTATTACATGTAAAACTTGTTTGATAAAAATATAATTCGTTGATCATCAACATT