lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 3333333333333 1111111 1111111 22222222222222222 2222222222222222222222222222222222 22 2222222222222222 444444444444444444 111111111 33333333 111 4444444 11111 222222 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 7777777777777777777777777777777777777777777777777777 1 111 333333333333333333333333 11 111 111 3333 111111
lowQualScore : 6 99 44444 4444444444444 3333333 4 4 3333333 44444444444444444 3 3 9999999999999999999999999999999999 44 9999999999999999 44 888 000000000000000000 2 555555555 77777777 6 44 000 5 8888888 44444 111111 777 0 7 5 44 2 55 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 0 66 2222222222222222222222222222222222222222222222222222 4 888888 5 555 4 222 555555555555555555555555 3 55 0 111 000 5 3333 333333
lowQualScore : . .. ..... ............. ....... . . ....... ................. . . .................................. .. ................ .. ... .................. . ......... ........ . .. ... . ....... ..... ...... ... . . . .. . .. ................................................................................................................... .. . .. .................................................... . ...... . ... . ... ........................ . .. . ... ... . .... ......
lowQualScore : 7 22 33333 4444444444444 2222222 0 0 0000000 66666666666666666 6 6 7777777777777777777777777777777777 55 1111111111111111 66 111 666666666666666666 3 999999999 00000000 1 44 000 7 1111111 33333 888888 555 7 3 0 22 4 55 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66 1 11 0000000000000000000000000000000000000000000000000000 0 888888 6 888 6 444 777777777777777777777777 3 44 5 777 333 0 4444 000000
consensus : TATGTCATAATGAAAGA-AT--AG-----TAAA-------------GGTCTGTTG---TGACC-TT-G-------ACC-------TC-------ATG-A-CT------ACAA--NATAT-G--T-AGGT------GTCTTCC-TTTAAT----GG-T-------CAAC--TAC--NTTTGT---TAA----TAAAATATGAAAGCTTTAT---GT---TGAAAAC-AT--T--CAANATATCGTG---TCACAAC-AAA-TT-AG-GA-----TGA----N-AAACAGA---ATAAATCAAC-TACCTTTGCATAAAA--TAT---AAA---T-TAGAAGG-TTTA---C---GTTGAAA-A-CTTTTCA--ACTTAAT-CGTG--------TCACAATGAAAGCATAG---T--AA--AGT--GAGAT-TG---AGGTCTGTTGTGACCT--TGACCTTTGACCTCATGACCCC------AAA----AT-CT----G-T----GT-CTT---CC-TT----TAATGGTCA---ACTAC-CTT-----T-G----TAT-A-------AA-ATATGAAAGCTTTATGTTGAAAGCNATT-CAAGA-TATCGT---GTCACAACGAAAGT
Reference ( gi|4 ) : TATGTCATAATGAAAGA-AT--AG-----TAAA-------------GGTCTGTTG---TGACC-TT-G-------ACC-------TT-------ATG-A-CT------ACAA--TATAT-G--T-AGGT------GTCTTCTATTTAAT----AG-C-------AAAT--TAC--ATTTGC---TAA----TAACACGTGAAAGCTTTAT---AT---TGAAAAC--T--T--CAAAATATTGTG---TCACAAC-AAA-TTGAG-GA-----TGA----A-AAACAGA---ACAAATCAAC-TACCTTTGTATAAAA--TAT---AAA---TATAGAAGG-CTTA---C---GTTGAAA-A-CTTTTCA--ACTTAAT-TATG--------TCACACTGAAAGCATAG---T--AA--TGTCAGAGAT-TG--TATATCTGTTGTGACCT--TGACCTTTAACCTAATCACCCT------AAA----AT-CT----G-T----GT-CTA---CC-TT----TGATGTTCA---ATTAT-CTT-----T-C----TATCA-------AA-ATAGGAAAGCTTTGTGTTGAAAACTATT-CATAT-TATTTT---ATCACAATGAAAGT
gi|3 : TATGTCATAATGAAAGA-AT--AG-----TAAA-------------GGTCTGTTG---TGACC-TT-G-------ACC-------TT-------ATG-A-CT------ACAA--TATAT-G--T-AGGT------GTCTTCTATTTAAT----AG-C-------AAAT--TAC--ATTTGC---TAA----TAACACGTGAAAGCTTTAT---AT---TGAAAAC--T--T--CAAAATATTGTG---TCACAAC-AAA-TTGAG-GA-----TGA----A-AAAC
gi|19 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactATGTCCTAATGAAAAT-AT--GG-----TAAA-------------GG------G---TGACTATT-G-------ATC-------TC-------GTA-A-CT------CCAA--AATCT-------GAT------GTCTTCC-TTTAAT----GG-T-------CAAC--TAA--CTTTGT-----A----TGAAATATAAAAGC
gi|6 : gctacctacttgcatcaatttatcTGTCATAAGTTAAGA--T--AG-----AGAA-------------GGTCTATTG---AGACC-TT-GACCATGTACC-------TT-------ATGAA-C--------CGA--TATCT-A--T-AGGT------GTCTCCT-TTTCAT----GA-T-------CAAG--TAC--ATTTGCA--TAA-----AATCC---AAAGTTTTAA---GT---TGAAAATGAT--TA-CAGATTATCGTG---TCACAAC-CAA----AGCGA-----TGAAGTTA-AAGCAGACTGACAA
gi|9 : tacccttaaaatatgattggtctttattgaaaacttccatcttatccGTCACAATGAAAGA-AT--AACTGAATGAA-------------GACCTGT------GATC-TT-G-------ACC-------TC-------CTG-A-C--------CTT--TACAT-GCTT-AATT------ATCTT-TCTTGAAT----GGAC-------AACT--TCCCAAGT--------A----TGAAATTTGAAAGCTTTAT---GT---TGAAAGCCAT--T--CAAGATACAATG---TCACAAT-GAA----AGTGA-----TGA----C-AACCAtgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|18 : aagatcatctaccacaggaggaaatataaaaggtcatagttgaaaatatcagTCATAATGAAAAC-AT--AG-----TAAACTTAGAGATTGAAAGTCCATTT---TGACC-TT-G-------ACCGTTGACTTC-------ATG-A-CC------GTAA---ATTTCA--T-AAGG------GTCT-CTCTTTAAT----GG-T-------AAAC--TAC--ATTTGT-----A----TAAAATATGAAAGcatgcgcagatgggtagattacttatatcaatgaaggac
gi|1 : gacttatcaaaATAAAAGATATTTAG-----CAAAAA-----------GATCT---------ACT-TT-A-------ACC-------TT--------TG-A-CC------AAAA---ATAT-A--T-AGAT------ATCTT-TGTTTGATGATCAG-CTTCTTTCAAAT--TAC--AT---------------AAAATTGGAAAGCTTTTT---GT---TGAAAACTGT--C--CAATATATAAAA---TCACAAC-AAAGTTGAG-GACAGCTTGA----C-AGACAGA---
gi|13 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaat-----TGAG-------------GATTTGGTGACTTGACC-TTTG-------ACC-------TC-------ATG-G-CT------CCAAATTGCAT-A--TAAGGA------GTCCTCC-TTTAAT----GG-T-------CAAC--TAC--TTTTGT---TAA----cagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|12 : ataaacagctatctttgcataaaatattagagtttatttcgttgaaaaacattaatttaaaagatggacagaagtcacaataaaaatatacatttaaactgtgggatAAA-------------GGTCTGTTG---TCACC-TT-G-------ACT-------TTTGATATCATG-ATCT------AAAA--AAC-T-G--C-AAG-------ATCTTCC-TTTAATC---AT-C-------ACATACTAT--AATTAA---TAATCTGTAAAATAAGAAAGCTTTA---------TGAAAAaa
gi|2 : atcaatcaccttttatcattgtttcaaatatgaaaggtctaggttgaaattttttcaacctattgtatcacaatgTTTGGTA---TGGCC-TT-G-------ATC-------TTTAACTTCATG-A-TTTTTAGAACAA--AATAC----T-AGTTTTTAAAATCTTC-ATCTAAT----GG-T-------CAAC--TAC--CTTTGTATTTAA----TA-----TAAATGTTTTAT---AT---TGAAAGCTAT--T--CAAGATATCCTG---CCACAATGAAA-CT----GA-----TGA----C-AGACAaagttttc
gi|14 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgatATC-TT-G-------ACC-------TC-------ATG-A-CC------CAAA--AATGT-G--C-AGGTA-----ATTTTC--TTTAAT----AA-A-------CAGC--TAT--CTTTGC-----A----TAAAATATTAGAG-TTTATTTCGT---TGAAAAatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|10 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagagga-------TT-------GTA-A-CT------AAAA--TCT-T-C--T-AG-T------GTTCTCCTTTTAAT----GA-T-------CAGT--TAC--TTATGT-----A----TAAAACATGAAAGTCTTTT---CT---TGAAAGC--TGTT--CAATATATTTTAAAATCACAAC-AAA-T---GCGA-----TGG----ACAAAC
gi|20 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttg--TAC--TTTTGT-----A----TAAAATATGAAAGGGTTAC---CTAGGTCAAAAC--T--TTTCAACTTATTGTG---TCAAAAC-AAA----AG-CA-----TGA----tcacaaacacaca
gi|14 : ttaacaA---ATAAA-CAGC-TATCTTTGCATAAAA--TAT-----------TAGA--G-TTTATTTC---GTTGAAA-A-tacacttaaaaattgaaggtctactgt
gi|13 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatcttgacctcatgacccaaaaatgtgcaggtaattttcttt---ATAAA-CAGC-TATCTTTGCATAAAA--TAT-----------TAGA--G-TTTATTTC---GTTGAAA-AACATT--A--ATTTAAAAGATGGACAGAAGTCACAATAAAAATATACATTT--AAACTGT--GGGAT-TG--AGGATTTG--GTGAC-T--TGACCTTTGACCTCATGGCTCC------AAATTGCAT-ATAAG-G-A----GT-CCT---CC-TT----TAATGGTCA---ACTA--CTT-----T------TGTTA-------AA-A
gi|12 : ATCAAT-CACCTTT-TATCAT---TGTTTCAAA---TATGAAAGG-TCTA---G---GTTGAAA-T-TTTTTCA--ACCT-AT-TGTA--------TCACAATGAAAG---------------------------------GTCTGTTGTCACCT--TGACTTTTGATATCATGATCTA------AAA----AA-CT----G-CAAG-AT-CTT---CC-TT----TAATCATCACATACTATAATTAATAAT-C----TGT-A-------AA-ATAAGAAAGCTTTA---TGAAAA
gi|1 : TTAAC-TGCCTTTGCA--AAA--------AAA---TATCTAAGA-TCTA---C---ACAGAAA-A-CTTTTCA--ACTTA-T-CATG--------TCACAATGAAAGCACAG---T--AA--AGT------------TACATTT----CGACAA--TGTTTTGTAACAT--TCACCCCATG---AAA----GT-C-----A-T----TT-TT-------TT----TAATAGCCA---ACAAT-TTT-----T-G----CATCA-------GATATAT--AAGTTTTATATTGAAAATGATT-CAAAA-TATaagttttc
gi|20 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatTTAACATACTTTTGTATAAAA--TAT---GA---------AAGG-GTTA---CCTAGGTCAAA-A-CTTTTCA--ACTT-AT-TGTG--------TCAAAACAAAAGCATGA---T--AC--ACTTAAAAAT-TG--AAGGTCTACTGTcaatgccccaataaatttgatgatagacaca
gi|19 : TCAAC-TAACTTTGTATGAAA--TAT---AAA---
gi|5 : gctacctacttgcatcaatttatcatgtcctaatgaaaatatggtaaagggtgactattgatctcgtaactccaaaatctgatgtcttcctttaatggCAAT-TATTTTTGTAAAAAA--TAT---AA---------AAGT-TTTA---T---ACTGAAACA----TTCAAGAC---AT-CATA--------TCACAATGAAAGCagc
gi|6 : tctgaagtgttattttaatagtcagg-TACCCTT----AAAA--TAT---GAT---T------GG-TCTT---T---ATTGAAA-A-CTTC-CA--TCTTA-T-CCTG--------TCATA----------AG---T--TA--AGATAGAGA-------AGGTCTATTGAGACCT--TGACCATGTACCTTATGAACC-------GAT----AT-CTATAGG-T----GT-CTC---CT-TT----TCATGATCA---AGTAC-ATT-----T-G----CAT-A-------AA-AT-CCAAAGTTTTAAGTTGAAAATGATTACAGAT-TATCGT---GTCACAACCAAAGgatgacagacagccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|3 : ACCTTTTCACAAAA--CAT-------------GAAAG-CTC----------T-----A-CTTTTCA--ACTTA-----TG--------TCATAATGAAAGAATAG---T--AA--------AGGT----------CTGTTGTGACCT--TGACCTT-------ATGACTAC------AAT----AT-ATGTAGG-T----GT-CTT---CTATT----TAATAGCAA---ATTAC-ATT-----TGC----TAATA-------AC-ACGTGAAAGCTTTATATTGAAAAC--TT-CAAAA-TATTGT---GTCACAACAAAcgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|2 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagTAAAACTTGT---AAAACTTGTAAAA---CTTA-------AT--AAT-A-TTTTT----ATTTCAA-TGTG--------TCACAATCAA-GCATAG---C-------GT--GAGAT-TGACGAT-TTTGGTATGGCCT--TGATCTTTAACTTCATGATTTTTAGAACAAA----ATACTA---G-T----TT-TTAAAATC-TTCATCTAATGGTCA---ACTAC-CTT-----T-G----TATTT-------AA--TATAAATGTTTTATATTGAAAGCTATT-CAAGA-TATCCT---GCCACAATGAAAttgaggatgaaaaac
gi|9 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccag---AAA---TATAAAAGGTCATA-------GTTGAAA-A-T-------------AT-CAGG--------TCACAATGAAAGAATAA---CTGAA--TG---AAGACCTG--TG-ATCT----TGACCTCCTGACCTTTA-------CATGCT------TAA--------T------T----AT-CTT---TC-TT----GAATGGACA---A-----CTT-----C-CCAAGTAT-G-------AA-ATTTGAAAGCTTTATGTTGAAAGCCATT-CAAGA-TACAAT---GTCACAATGAAAGTctgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|18 : aagatcatctaccacaggagg--ACTTA-T-CAAA--------TCATAATGAAAACATAG---T--AA--ACTTAGAGAT-TG--AAAGTCCATTTTGACCT--TGACCGTTGACTTCATGACCGT------AAA----TT-TC----A-TAAGGGT-CTC---TC-TT----TAATGGTAA---ACTAC-ATT-----T-G----TAT-A-------AA-ATATGAAAGgatgacaaccacatgcgcagatgggtagattacttatatcaatgaaggac
gi|19 : g--TGACTATTGATCTCGTAACTCC------AAA----AT-CT----GAT----GT-CTT---CC-TT----TAATGGTCA---ACTAA-CTT-----T-G----TAT-G-------AA-ATATAAAAGC
gi|10 : gctacctacttgcatcaatttatcatgtcctaatgaaaatatggtaaagggCT------AAA----AT-CTTCTAG-T----GTTCTC---CT-TT----TAATGATCA---GTTAC-TTA-----T-G----TAT-A-------AA-ACATGAAAGTCTTTTCTTGAAAGCTGTT-CA-ATATATTTTAAAATCACAACAAA
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaTCA---ATCAC-CTT-----T------TATCATTGTTTCAA-ATATGAAAGGTCTAGGTTGAAATTTTTT-CAACC-TATTGT---ATCACAATGAAAGtgcgatggacaaactcacaaacacaca
gi|5 : aCA---ATTAT-TTT-----T-G----TA-AA-------AA-ATATAAAAGTTTTATACTGAAA--CATT-CAAGA-CATCAT---ATCACAATGAAAGgtctgttgtcaccttgacttttgatatcatgatctaaaaaactgcaagatcttcctttaatcatcacatactataattaataatctgtaaaataagaaagctttatgaaaaaagttttc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GCAATGACAGAATGGATAGAGTGATTATGTTCATTTACAGATATGCATTTCCATATATCAACTATGTTAGTATCATATATAAAAGCTCCAAGTGTAATACTCTTATTGAGAAGGTCTGTTGAAGCCTTGCAAAAAAGGCTACAGGTGCCTTTCTTCAAAGATTGTCTACCTTTACATAAAATATAAAAGCCTTTTCTTGAAAAATGTGGAAGATACCAAGTATGATGAATGCGATAACCAACAGACAGACAGACATATACAAAAATCTGTAGA
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|15 ): TCACTCCAGAAACTTGATTTATACTTCATATGTACAGGTACTAATGACAAAGAATTCATTAATGTTGTAATAATGGCAGAGAGCTGTAATTATGTTCTTTACCCAAAACCTGCACTTCTATGTTCTATGGCAGGATCAACCATCTTTGTAAAAACTATGAAAGCTC
Unaligned ( gi|16 ): TCAAGATGCTGAGTCACAACAAAAATAGTAGGACAGACAAACAACCACAGCCAACAAATTTACGTTTAATAAACTACCTTTATGCGGAAAATGAAAGTTAAATGATGAAAAGTTTTCAAGATGCTGTATAATAATGAACATGTATCAAACTTTGATTGAAAGCC
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC
Alignments
lowQualScore : 1 11 11 11 111 222 1111111 222222 22 22222222222222 4444444444444444 22222222 111111 11111111111 777777777777777777777 1111111 1 11111111 5555555555555555555555555555555555 11111111 444444444444444444 111111111111 111111 111
lowQualScore : 3 88 33 2 1 8 0 00 555 1 444 1 000 6 0 9999999 0 1 99 111111 4 6 3 2 5 77 1 88888888888888 5 2222222222222222 66 44444444 333333 8 44444444444 333333333333333333333 8 8888888 8 44 1 7 555 11111111 0 77 44 7777777777777777777777777777777777 88888 3 0 3 555 2 00000000 5555555 555555555555555555 777 2 7777777 2 000000000000 000000 666666 2 2 0 1 555 555 999999999 33 4 000 777 2
lowQualScore : . .. .. . . . . .. ... . ... . ... . . ....... . . .. ...... . . . . . .. . .............. . ................ .. ........ ...... . ........... ..................... . ....... . .. . . ... ........ . .. .. .................................. ..... . . . ... . ........ ....... .................. ... . ....... . ............ ...... ...... . . . . ... ... ......... .. . ... ... .
lowQualScore : 3 33 88 5 0 0 8 22 666 0 000 4 333 7 7 7777777 7 0 22 777777 7 7 7 2 7 77 0 99999999999999 7 0000000000000000 77 22222222 000000 0 33333333333 666666666666666666666 0 8888888 0 55 4 4 777 22222222 2 11 22 7777777777777777777777777777777777 33333 6 4 1 444 9 88888888 5555555 999999999999999999 888 2 6666666 4 000000000000 333333 444444 2 2 6 4 444 888 777777777 77 0 222 000 8
consensus : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCACAAAATA---TGTAGGTGTCTTTT-TTT-AATAGTC-A----ATTACNTT--TG--CTA-ATAAAACGTG-AAAGCTTTATATTG-AAAAC-GTTCAAAATAT-----------CGNGTCACAA-CGAA-T-TGAG--GA-----TGAN-AAACAGA--------ACAAAT-----CAAC-TACCTTT-------GCATAAAATATGAA---------T------AAGGTC-TA---C---GTTGAAAA-CTTTT-CAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCTT-TGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTCC---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTT---AT---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
Reference ( family-7567 ) : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTCATGACTACAANATA---TGTAGGTGTCTTCC-TTT-AATGGTC-A----ACTACNTT--TG--TTA-ATAAAATATG-AAAGCTTTATGTTG-AAAAC-ATTCAANATAT-----------CGTGTCACAA-CAAA-T-T-AG--GA-----TGAN-AAACAGA--------ATAAAT-----CAAC-TACCTTT-------GCATAAAATATAAA-------T-TA----GAAGGTT-TA---C---GTTGAAAA-CTTTT-CAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCTT-TGACCT---CATGAC-CC------CAAA----AT-CT----G-T-------GT--CTTCC---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTT---AT---GTTGAAA-----GCNATTCAAGAT-ATC-GT---GTCACAACGAAAGT
gi|1 : ------ACTATCTTTG------TGT-AAAA-TATAAAAG
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcATAAAAGATATTTAGCAAAAAGATCT------ACTTT-AACCTT-TGACCA-AAAATA---TATAGATATCTTTG-TTT-GATGATC-A----GCTTCTTT--CAAATTACATAAAATTGG-AAAGCTTTTTGTTG-AAAACTGTCCAATATAT-----------AAAATCACAA-CAAAGT-TGAG--GACAGCTTGAC-AGACAGA--------atatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatA--------ACAAA------CGAC-TATCTTT-------CTGAAGAATATGAA-----------------AGCTG-CA---T---GCTGAAA--TTTCT-CAAGATA-TTG-TG--------TT-CAATTAAA----C--AA---CAAG--GACTACT--GAGTAT---AT-G--TC-----CACTGTGACCTTGACATT-TGACTG---TGAGAT-AT------CAAA-----T-CT----G-TAGGA---GT--TTTCC---TTT-A-------AAT-----AA-----TTACATTTAACTGCCTTTG------CAA-AAAAATATCTAAGATCT---AC---ACAGAAA-----ACTTTTCAACTT-ATC-AT---GTCACAATGAAAGcagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttT-----TAAC-TGCCTTT-------GCAAAAAA-ATA-----------TC----TAAGATC-TA---C---ACAGAAAA-CTTTT-CAACTTA-TCA-TG--------TCACAATGAAAGC-AC--AG---TAAA--G-----T--TAC-ATT--------TCGACAATGTTTTG----TAACATT-C-ACCC---CATG------------AAA----GT-C-----A-T------------TTTT---TTT-A-------A-T-----AG-----CCA------ACAATTTTTG------CAT-CAGA-TATATAAGTTTT---AT---ATTGAAA-----ATGATTCAAAAT-ATCAAT---GCCCCAATAAAcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|10 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatC------CAAA----AT-CT----G-C-------A---CTTCTATTTTC-A-------A-TTGCAGGA-----TCA------ACAACTTTAG------TAT-A-AA-TATAAAAGCTCT---tttgatgatagacaca
gi|10 : tgctctgttC------TAAA----AT-CTTCTAG-T-------GT--TCTCC---TTTTA-------A-T-----GA-----TCA------GTTACTTATG------TAT-AAAA-CATGAAAGTCTT---TT---CTTGAAA-----GCTGTTCAATAT-ATT-TTAAAATCACAACAAAtggtgtaataaaattagtggaactgtttgttgtaactaaaatcttctagtgttctccttttaatgatcagttacttatgtataaaacatgaaagtcttttcttgaaagctgttcaatatattttaaaatcacaacaaatgcgatggacaaactcacaaacacaca
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaAT-----CAAT-CACCTTTTATCATTGTTTCAAATATGAA-----------------AGGTC-TA---G---GTTGAAAT-TTTTT-CAACCTA-TTG-TA--------TCACAATGAAAG--------------------------------------G--TC-----TGTTGTCACCTTGACTTT-TGATAT---CATGAT-CT------AAAA----AA-CT----G-CAAG----AT--CTTCC---TTT-A-------A-T-----CA-----TCACAT---ACTATAATTAATAATCTGT-AAAA-TAAGAAAGCTTT---AT---Gtgcgatggacaaactcacaaacacaca
gi|13 : --------ATAAA------CAGC-TATCTTT-------GCATAAAATAT------------TA----GA--GTT-TATTTC---GTTGAAAAACATT---AATTTAAAAGATGGACAGAAGTCACAATAAAAAT-AT--ACATTTAAACTG-----T--GGG-ATTG-AG-GA-TT-----TG--GTGAC-TTGACCTT-TGACCT---CATGGC-TC------CAAATTGCAT-ATAAG-G-A-------GT--CCTCC---TTT-A-------A-T-----GG-----TCA------ACTACTTTTG------T-T-AAAA-aaaaaagttttc
gi|14 : T-TGACCT---CATGAC-CC------AAAA----AT-GT----G-CAG-----GTAATTTTC---TTT-A-------A-T-----AA-----ACA------GCTATCTTTG------CAT-AAAA-TATTAGAG-TTT---ATTTCGTTGAAA-----
gi|15 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatc-CC------CAAA----AC-CT----G-C-------A---CTTCTATGTTC-T-------A-T-----GGCAGGATCA------ACCATCTTTG------TAA-AAAC-TATGAAAGCTa
gi|16 : tcactccagaaacttgatttatacttcatatgtacaggtactaatgacaaagaattcattaatgttgtaataatggcagagagctgtaattatgttcttta---TTT-A-------A-T-----A--------A------ACTACCTTTA------TGC-GGAA-AATGAAAGTTAA---AT---GATGAAA-----AGTTTTCAAGAT-GCT-GT---ATAATAATGAAc
gi|18 : tcaagatgctgagtcacaacaaaaatagtaggacagacaaacaaccacagccaacaaatttacgACTTA-TCA-AA--------TCATAATGAAAAC-AT--AG---TAAA--C-----TTAGAG-ATTG-AAAG--TC-----CATTTTGACCTTGACCGT-TGACTT---CATGAC-CG------TAAA----TT-TC----A-TAAGG---GT--CTCTC---TTT-A-------A-T-----GG-----TAA------ACTACATTTG------TAT-AAAA-TATGAAAGcatgtatcaaactttgattgaaagcc
gi|19 : gT-CAATTTA-TCA-TG--------TCCTAATGAAAAT-AT--GG---TAAA--G------------------G-G--T------------------GACTAT-TGATCT---CGTAAC-TC------CAAA----AT-CT----GAT-------GT--CTTCC---TTT-A-------A-T-----GG-----TCA------ACTAACTTTG------TAT-GAAA-TATAAAAGC
gi|2 : gctacctacttgcaTGATCTTGACCTT-TGACCC---CATGAC-CG------AAAA----TT-CTCTAGG-T-------GT--TTTTT---TTT-
gi|2 : cttTGACCTTTGACCCCATGACCGAAAATTC---TCTAGGTGTTTTTT-TTTCAGTATTCTT----ATTCCTTTACTG--CCA-GTAAAACTTGTAAAACT---TGT---AAAAC--TTAATAATATTTTTATTTCAATGTGTCACAATCAAG-CAT-AG--CG-----TGAG-Acagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatctTTTT-TATTTCAAT-G-TG--------TCACAATCAA-GC-AT--AG---C-----G-----T--GAG-ATTG-AC-GATTT-----TGGTATGGCCTTGATCTT-TAACTT---CATGAT-TTTTAGAACAAA----ATACTA---G-TTTTTAAAAT--CTTCA---TCT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-TTAA-TATAAATGTTTT---AT---ATTGAAA-----GCTATTCAAGAT-ATC-CT---GCCACAATGAAAttgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataata-CT----G-G-------GT--CCTAC---TTT-ATCATGTTA-T-----GG-----TCA------ACT-CC--TA------CAC-AAGA-TTTGAAATTGTTACCAT---GTTCAAATTAAGGTTGTTTTAATT-CTT-GT---GTCACGATAAActgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|20 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgT-----TAACATACTTTT-------GTATAAAATATGAA-----------------AGGGT-TA---CCTAGGTCAAAA-CTTTT-CAACTT-ATTG-TG--------TCAAAACAAAAGC-AT--GA---TACA--C-----TTAAAA-ATTGAAG-G--TC-----TACTGTtatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|3 : TTG-AAAACTATTCAAAATAT-----------CAAGTCCCAA-AGAA-A-G-AGATGA-----TGAACAAACAGACAACAGACATTAATGAAGCCAACAGACCGAT-------GCCCATAATATAAAACTTCCTT-TATTTTGAAAGTTACA---T---GTTGGAAAGTTTTT-TGAGATAAT-G-TG--------TCACAATGAAAAC-GA--AT---TAAA--C-----T--TGG-AATGAAG-G--CC-----TGGTGTGGTGTTG-CTCT-TGACAC---CAC-ACACA------CAAA----A----------------------------------A-------A-A-----G------------------ACCTTTT------CAC-AAAA-CATGAAAGCTCT---A-----------------CTTTTCAACTT-A----T---GTCATAATGAAAG
gi|3 : tttctTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA---TGTAGGTGTCTTCTATTT-AATAGCA-A----ATTACATT--TG--CTA-ATAACACGTG-AAAGCTTTATATTG-AAAAC--TTCAAAATAT-----------TGTGTCACAA-CAAA-T-TGAG--GA-----TGAA-AAACaatagtaaaggtctgttgtgaccttgaccttatgactacaatatatgtaggtgtcttctatttaatagcaaattacatttgctaataacacgtgaaagctttatattgaaaacttcaaaatattgtgtcacaacaaattgaggatgaaaaac
gi|4 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA---TGTAGGTGTCTTCTATTT-AATAGCA-A----ATTACATT--TG--CTA-ATAACACGTG-AAAGCTTTATATTG-AAAAC--TTCAAAATAT-----------TGTGTCACAA-CAAA-T-TGAG--GA-----TGAA-AAACAGA--------ACAAAT-----CAAC-TACCTTT-------GTATAAAATATAAA-------TATA----GAAGGCT-TA---C---GTTGAAAA-CTTTT-CAACTTAATTA-TG--------TCACACTGAAAGC-AT--AG---TAAT--G-----TCAGAG-ATTGTAT-A--TC-----TGTTGTGACCTTGACCTT-TAACCT---AATCAC-CC------TAAA----AT-CT----G-T-------GT--CTACC---TTT-G-------A-T-----GT-----TCA------ATTATCTTTC------TATCAAAA-TAGGAAAGCTTT---GT---GTTGAAA-----ACTATTCATATT-ATT-TT---ATCACAATGAAAGT
gi|5 : GTGTTAT-TTT-AATAGTC-AGGCAATTATTTT--TG--T-A-A-AAAATATA-AAAGTTTTATACTG-AAA-C-ATTCAAGACAT-----------CATATCACAA-TGAA-----AGC-GA-----TGAC-AGACAG
gi|6 : tctgaa-TACCCTT-----------AAAATATGA--------T-T--------GGTC-TT---T---ATTGAAAA-CTTC--CATCTTA-TCC-TG--------TCATAAGTTAAG--AT--AG-------------------AG-A----AG-G--TC-----TATTGAGACCTTGACCAT-GTACCT---TATGAA-CC-------GAT----AT-CTATAGG-T-------GT--CTCCT---TTT-C-------A-T-----GA-----TCA------AGTACATTTG------CAT-AAAA-TCC-AAAGTTTT---AA---GTTGAAA-----ATGATTACAGATTATC-GT---GTCACAACCAAAGccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|6 : AT-----CAAG-TACATTT-------GCATAAAATCCAAA------------------GTTT-TA---A---GTTGAAAA-TGATTACAGATTA-TCG-TG--------TCACAACCAAAGCGATGAAGT--TAAA--G-----C---AG-ACTG-Acgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|7 : tacccttaaaatatgattggtctttattgaaaacttccatcttatcctgtcataagttaagatagagaaggtctattgagaccttgaccatgtaccttatgaaccgatatctataggtgtctccttttcatgAA--GGTCTGTTGAAGCCTT-G------------CAAAAAAGGCTACAGGTGCCTTTC-TTC-AAAGATT-G----TCTACCTT--TA--C---ATAAAATATA-AAAGCCTTTTCTTGAAAAAT-GTGGAAGATAC-----------CAAGT-ATGA-TGAA-T----GC-GA-----TAAC-CAACAGA--------caatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|9 : gcaatgacagaatggatagagtgattatgttcatttacagatatgcatttccatatatcaactatgttagtatcatatataaaagctccaagtgtaatactcttattgagAGAT-----CATC-TACCACA-------GGAGGAAATATAAA-----------------AGGTCATA-------GTTGAAAA-T------------ATCA-GG--------TCACAATGAAAGA-AT--A-------A--C-----T--GA--ATGA-AG-A--CC-----TGT---GATCTTGACCTCCTGACCTTTACATG---CT------TAA---------T------T-------AT--CTTTC---TTG-A-------A-T-----GG-----ACA------ACTTCCCAAG------TAT-GAAA-TTTGAAAGCTTT---AT---GTTGAAA-----GCCATTCAAGAT-ACA-AT---GTCACAATGAAAGTcagacagacatatacaaaaatctgtaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC
Alignments
lowQualScore : 1 11 11 1 1 111 2222222 11111 22 22222222 11111 222222 111111 11111111111 5555555555555555555 11111 111111 11 11111111 666666666666666666666666666666666666666666666666666 1111111111 33333333333333333333333 111111111111 111111 1111111 111
lowQualScore : 3 88 33 2 1 8 0 5 0 1 8 1 0 3 6 111 2222222 1 11111 22 6 3 6 1 6 55 0 11 77777777 66666 6 1 99 333333 333333 8 44444444444 4 8888888888888888888 33333 888888 4 88888 3 1 44 555 11111111 0 000000000000000000000000000000000000000000000000000 0 1 3 555 0 3333333333 77777777777777777777777 33 888888 2 7777777 2 000000000000 000000 666666 2 2 0 1 0000000 88888 1 33 4 000 777
lowQualScore : . .. .. . . . . . . . . . . . . ... ....... . ..... .. . . . . . .. . .. ........ ..... . . .. ...... ...... . ........... . ................... ..... ...... . ..... . . .. ... ........ . ................................................... . . . ... . .......... ....................... .. ...... . ....... . ............ ...... ...... . . . . ....... ..... . .. . ... ...
lowQualScore : 3 33 88 5 0 0 8 6 0 4 0 4 3 3 7 777 7777777 0 88888 77 7 7 7 4 7 33 3 77 33333333 77777 7 0 22 000000 000000 0 33333333333 0 5555555555555555555 33333 222222 0 22222 3 4 00 777 22222222 2 555555555555555555555555555555555555555555555555555 4 4 3 888 4 6666666666 55555555555555555555555 11 666666 2 2222222 2 111111111111 333333 444444 2 2 6 4 2222222 33333 0 77 0 222 000
consensus : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TG-ACAAACAG--AACA------AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA--T------------AAGGT---C-TA---C--GTT-GAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
Reference ( family-7567 ) : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCACAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TG-ANAAACAG--AACA------AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA--T------------AAGGT---C-TA---C--GTT-GAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
gi|1 : AA----AT-TT----C-C-------AT--CTTCAAC---TGC-A-------G-------AA-----TCA-------CTATCTTTG------TGT-AAAA-TATAAAAG
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagATAAAAGATATTTAGCAAAAAGATCT------ACTTT-AACCTT-TGACCA-AAAATA-TATAGATATCTTTG-TTT-GA---TGAT----C-AGCTTCTTT--CAAATTACATAAAATTGG-AAAGCTTTTTGTTGAA-AACTGTCCAATATATAAAATCACAACAAAGTTGAG--GACAGCTTG-ACAGACAG--Aatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaat--AACA------AA------CGAC-TATCTTT-------CTGAAGAA-TATGAA----------------AGCT---G-CA---T--GCT-GAAA--TT--TCTCAAGATA-TTG-TG--------TT-CAATTAAA----C--AA---CAAG--GACTACT--GAGTAT---AT-G--TC-----CACTGTGACCTTGACAT-TTGACTG---TGAGAT-AT------CAAA-----T-CT----G-TAGGA---GT--TTTC--C---TTT-A-------AAT-----AA-----TTACATTTAACTGCCTTTG------CAA-AAAAATATCTAAGATCTA---C---ACAGAAA-----ACTTTTCAACTT-ATC-AT---GTCACAATGAAAGcagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttT-----TAAC-TGCCTTT-------GCAAAAAAATATC----T------------AAGAT---C-TA---C--ACA-GAAAA-CT--TTTCAACTTA-TCA-TG--------TCACAATGAAAGC-AC--AG---TAAA--G-----T--TAC-ATT--------TCGACAATGTTTTG----TAACAT-TC-ACCC---CATG------------AAA----GT---------C-------AT---TTT--T---TTT-A-------A-T-----AG-----CCA------ACAATTTTTG------CAT-CAGA-TATATAAGTTTTA---T---ATTGAAA-----ATGATTCAAAAT-ATCAAT---GCCCCAATAAAcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|10 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatC------CAAA----AT-CT----G-C-------A---CTTC--TATTTTC-A-------A-TTGCAGGA-----TCA------ACAACTTTAG------TAT-A-AA-TATAAAAGCTCTtttgatgatagacaca
gi|10 : tgctctgttC------TAAA----AT-CTTCTAG-T-------GT--TCTC--C---TTTTA-------A-T-----GA-----TCA------GTTACTTATG------TAT-AAAA-CATGAAAGTCTTT---T---CTTGAAA-----GCTGTTCAATAT-ATT-TTAAAATCACAACAAAtggtgtaataaaattagtggaactgtttgttgtaactaaaatcttctagtgttctccttttaatgatcagttacttatgtataaaacatgaaagtcttttcttgaaagctgttcaatatattttaaaatcacaacaaatgcgatggacaaactcacaaacacaca
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaAT-----CAAT-CACCTTTTATCATTGTTTCAAA-TATGAA----------------AGGT---C-TA---G--GTT-GAAAT-TT--TTTCAACCTA-TTG-TA--------TCACAATGAAAG--------------------------------------G--TC-----TGTTGTCACCTTGACTT-TTGATAT---CATGAT-CT------AAAA----AA-CT----G-CAAG----AT--CTTC--C---TTT-A-------A-T-----CA-----TCACAT---ACTATAATTAATAATCTGT-AAAA-TAAGAAAGCTTTA---T---GAAAAAA-----GTTTTtgcgatggacaaactcacaaacacaca
gi|13 : ATA------AA------CAGC-TATCTTT-------GCATAAAA-TAT-----T------------AGAGT---T-TATTTC--GTT-GAAAAACA--TT--AATTTAAAAGATGGACAGAAGTCACAATAAAAAT-AT--ACATTTAAACTG-----T--GGG-ATTG-AG-GA-TT-----TG--GTGAC-TTGACCT-TTGACCT---CATGGC-TC------CAAATTGCAT-ATAAG-G-A-------GT--CCTC--C---TTT-A-------A-T-----GG-----TCA------ACTACTTTTG------T-T-AAAA-c
gi|14 : -TTGACCT---CATGAC-CC------AAAA----AT-GT----G-CAG-----GTAATTTT--C---TTT-A-------A-T-----AA-----ACA------GCTATCTTTG------CAT-AAAA-TATTAGAG-TTTA---TTTCGTTGAAA-----
gi|15 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatc-CC------CAAA----AC-CT----G-C-------A---CTTC--TATGTTC-T-------A-T-----GGCAGGATCA------ACCATCTTTG------TAA-AAAC-TATGAAAGCTa
gi|16 : tcactccagaaacttgatttatacttcatatgtacaggtactaatgacaaagaattcattaatgttgtaataatggcagagagctgtaattatgttctttaAA----AT-TT----A-C-------GT-------------TT-A-------A-T-----A--------A------ACTACCTTTA------TGC-GGAA-AATGAAAGTTAAA---T---GATGAAA-----AGTTTTCAAGAT-GCT-GT---ATAATAATGAAc
gi|18 : tcaagatgctgagtcacaacaaaaatagtaggacagacaaacaaccacagccaacACTTA-TCA-AA--------TCATAATGAAAAC-AT--AG---TAAA--C-----TTAGAG-ATTG-AAAG--TC-----CATTTTGACCTTGACCG-TTGACTT---CATGAC-CG------TAAATTTCAT-AA----G-G-------GT--CTCT--C---TTT-A-------A-T-----GG-----TAA------ACTACATTTG------TAT-AAAA-TATGAAAGcatgtatcaaactttgattgaaagcc
gi|19 : gTCAATTTA-TCA-TG--------TCCTAATGAAAAT-AT--GG---TAAA--G------------------G-G--T------------------GACTA-TTGATCT---CGTAAC-TC------CAAA----AT-CT----GAT-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTAACTTTG------TAT-GAAA-TATAAAAGC
gi|2 : gctacctacttgcaTGACCTTTGACCCCATGACCGAAAATTC-TCTAGGTGTTTTTT-TTTCAG---TATT----CTTATTCCTTTACT--GCCA-GTAAAACTTGTAAAACTT
gi|2 : ctttgatctT--TTTTATTTCAAT-G-TG--------TCACAATCAA-GC-AT--AG---C-----G-----T--GAG-ATTG-AC-GATTT-----TGGTATGGCCTTGATCT-TTAACTT---CATGAT-TTTTAGAACAAA----ATACTA---G-TTTTTAAAAT--CTTC--A---TCT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-TTAA-TATAAATGTTTTA---T---ATTGAAA-----GCTATTCAAGAT-ATC-CT---GCCACAATGAAAgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataata-CT----G-G-------GT--CCTA--C---TTT-ATCATGTTA-T-----GG-----TCA------ACT-CCT--A------CAC-AAGA-TTTGAAATTGTTACCAT---GTTCAAATTAAGGTTGTTTTAATT-CTT-GT---GTCACGATAAActgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|20 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgT-----TAACATACTTTT-------GTATAAAA-TATGAA---------------AGGGTTACC-TA---G--GTC--AAAA-CT--TTTCAACTT-ATTG-TG--------TCAAAACAAAAGC-AT--GA---TACA--C-----TTAAAA-ATTGAAG-G--TC-----TACTGTtatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|3 : TTGAA-AACTATTCAAAATATCAAGTCCCAAAGAA--AGAGATGA-----TGAACAAACAGACAACAGACATTAATGAAGCCAACAGACCGAT-------GCCCATAA-TATAAAACTTCCTTTATTTTGAAAGT-----TA---CATGTTGGAAAG-TT--TTTTGAGATAAT-G-TG--------TCACAATGAAAAC-GA--AT---TAAA--C-----T--TGG-AATGAAG-G--CC-----TGGTGTGGTGTTG-CTC-TTGACAC---CAC-ACACA------CAAA----A------------------------------------A-------A-A-----G------------------ACCTTTT------CAC-AAAA-CATGAAAGCTCTA--------------------CTTTTCAACTT-A----T---GTCATAATGAAAG
gi|3 : tttctTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TG-AAAAACaatagtaaaggtctgttgtgaccttgaccttatgactacaatatatgtaggtgtcttctatttaatagcaaattacatttgctaataacacgtgaaagctttatattgaaaacttcaaaatattgtgtcacaacaaattgaggatgaaaaac
gi|4 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TG-AAAAACAG--AACA------AAT-----CAAC-TACCTTT-------GTATAAAA-TATAAA--TATAG--------AAGGC---T-TA---C--GTT-GAAAA-CT--TTTCAACTTAATTA-TG--------TCACACTGAAAGC-AT--AG---TAAT--G-----TCAGAG-ATTGTAT-A--TC-----TGTTGTGACCTTGACCT-TTAACCT---AATCAC-CC------TAAA----AT-CT----G-T-------GT--CTAC--C---TTT-G-------A-T-----GT-----TCA------ATTATCTTTC------TATCAAAA-TAGGAAAGCTTTG---T---GTTGAAA-----ACTATTCATATT-ATT-TT---ATCACAATGAAAGT
gi|5 : GTGTTAT-TTT-AA---TAGTCAGGC-AATTATTTT--T--G-TA-A-AAAATATA-AAAGTTTTATACTG-A-AAC-ATTCAAGACATCATATCACAATGAA----AGC-GA-----TG-ACAGACAG--
gi|6 : tctgaa-TACCCTT-----------AAAA-TATGAT--T--------------GGT---C-TT---T--ATT-GAAAA-CT--TC-CATCTTA-TCC-TG--------TCATAAGTTAAG--AT--AG-------------------AG-A----AG-G--TC-----TATTGAGACCTTGACCA-TGTACCT---TATGAA-CC-------GAT----AT-CTATAGG-T-------GT--CTCC--T---TTT-C-------A-T-----GA-----TCA------AGTACATTTG------CAT-AAAA-TCC-AAAGTTTTA---A---GTTGAAA-----ATGATTACAGATTATC-GT---GTCACAACCAAAGccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|6 : AT-----CAAG-TACATTT-------GCATAAAA-TCCA-----------------AAGTT---T-TA---A--GTT-GAAAA--TGATTACAGATT-ATCG-TG--------TCACAACCAAAGCGATGAAGT--TAAA--G-----C---AG-ACTG-Acgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|7 : tacccttaaaatatgattggtctttattgaaaacttccatcttatcctgtcataagttaagatagagaaggtctattgagaccttgaccatgtaccttatgaaccgatatctataggtgtctccttttcatgAA--GGTCTGTTGAAGCCTT-G----------CAAAAAAGGCTACAGGTGCCTTTC-TTC-AAAGATTGT----C----TACCTT--T--AC---ATAAAATATA-AAAGCCTTTTCTTGAAAAAT-GTGGAAGATACCAAGT-ATGATGAA-T---GC-GA-----TA-ACCAACAG--Acaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|9 : gcaatgacagaatggatagagtgattatgttcatttacagatatgcatttccatatatcaactatgttagtatcatatataaaagctccaagtgtaatactcttattgagA------GAT-----CATC-TACCACA-------GGAGGAAA-TATAAA----------------AGGT---CATA------GTT-GAAAA-T-------------ATCA-GG--------TCACAATGAAAGA-AT---------AA--C-----T--GA--ATGA-AG-A--CC--------TGTGATCTTGACCTCCTGACCTTTACATG-C-TT---------A----AT---------T-------AT--CTTT--C---TTG-A-------A-T-----GG-----ACA------ACTTCCCAAG------TAT-GAAA-TTTGAAAGCTTTA---T---GTTGAAA-----GCCATTCAAGAT-ACA-AT---GTCACAATGAAAGTcagacagacatatacaaaaatctgtaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC
Alignments
lowQualScore : 1 11 11 1 111 2222222 11111 22 22222222 11111 111111 11 111111 11111111111 5555555555555555555555 11111 111111 11111 11 11111111 666666666666666666666666666666666666666666666666666 1111111111 33333333333333333333333 111111111111 111111 1111111 111
lowQualScore : 3 88 33 2 1 8 0 5 8 1 8 1 0 3 6 111 2222222 1 11111 22 6 3 6 1 6 55 0 11 77777777 66666 6 999999 11 333333 8 44444444444 4 8888888888888888888888 33333 888888 22222 3 1 44 555 11111111 0 000000000000000000000000000000000000000000000000000 0 1 3 555 0 3333333333 77777777777777777777777 33 888888 2 7777777 2 000000000000 000000 666666 2 2 0 1 0000000 88888 1 33 4 000 777
lowQualScore : . .. .. . . . . . . . . . . . . ... ....... . ..... .. . . . . . .. . .. ........ ..... . ...... .. ...... . ........... . ...................... ..... ...... ..... . . .. ... ........ . ................................................... . . . ... . .......... ....................... .. ...... . ....... . ............ ...... ...... . . . . ....... ..... . .. . ... ...
lowQualScore : 3 33 88 5 0 0 8 6 8 4 0 4 3 3 7 777 7777777 0 88888 77 7 7 7 4 7 33 3 77 33333333 77777 7 222222 00 000000 0 33333333333 0 5555555555555555555555 33333 222222 22222 3 4 00 777 22222222 2 555555555555555555555555555555555555555555555555555 4 4 3 888 4 6666666666 55555555555555555555555 11 666666 2 2222222 2 111111111111 333333 444444 2 2 6 4 2222222 33333 0 77 0 222 000
consensus : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
Reference ( family-7567 ) : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
gi|1 : AA----AT-TT----C-C-------AT--CTTCAAC---TGC-A-------G-------AA-----TCA-------CTATCTTTG------TGT-AAAA-TATAAAAG
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagATAAAAGATATTTAGCAAAAAGATCT------ACTTT-AACCTT-TGACCA-AAAATA-TATAGATATCTTTG-TTT-GA---TGAT----C-AGCTTCTTT--CAAATTACATAAAATTGG-AAAGCTTTTTGTTGAA-AACTGTCCAATATATAAAATCACAACAAAGTTGAG--GACAGCTTGA-CAGACAGA------atatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatA------ACA--AA------CGAC-TATCTTT-------CTGAAGAA-TATGAA-------------------AGCT---G-CA---T--GCTGAAA--TT--TCTCAAGATA-TTG-TG--------TT-CAATTAAA----C--AA---CAAG--GACTACT--GAGTAT---AT-G--TC-----CACTGTGACCTTGACAT-TTGACTG---TGAGAT-AT------CAAA-----T-CT----G-TAGGA---GT--TTTC--C---TTT-A-------AAT-----AA-----TTACATTTAACTGCCTTTG------CAA-AAAAATATCTAAGATCTA---C---ACAGAAA-----ACTTTTCAACTT-ATC-AT---GTCACAATGAAAGcagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttT-----TAAC-TGCCTTT-------GCAAAAAAATATC---------------T----AAGAT---C-TA---C--ACAGAAAA-CT--TTTCAACTTA-TCA-TG--------TCACAATGAAAGC-AC--AG---TAAA--G-----T--TAC-ATT--------TCGACAATGTTTTG----TAACAT-TC-ACCC---CATG------------AAA----GT---------C-------AT---TTT--T---TTT-A-------A-T-----AG-----CCA------ACAATTTTTG------CAT-CAGA-TATATAAGTTTTA---T---ATTGAAA-----ATGATTCAAAAT-ATCAAT---GCCCCAATAAAcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|10 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatC------CAAA----AT-CT----G-C-------A---CTTC--TATTTTC-A-------A-TTGCAGGA-----TCA------ACAACTTTAG------TAT-A-AA-TATAAAAGCTCTtttgatgatagacaca
gi|10 : tgctctgttC------TAAA----AT-CTTCTAG-T-------GT--TCTC--C---TTTTA-------A-T-----GA-----TCA------GTTACTTATG------TAT-AAAA-CATGAAAGTCTTT---T---CTTGAAA-----GCTGTTCAATAT-ATT-TTAAAATCACAACAAAtggtgtaataaaattagtggaactgtttgttgtaactaaaatcttctagtgttctccttttaatgatcagttacttatgtataaaacatgaaagtcttttcttgaaagctgttcaatatattttaaaatcacaacaaatgcgatggacaaactcacaaacacaca
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaAT-----CAAT-CACCTTTTATCATTGTTTCAAA-TATGAA-------------------AGGT---C-TA---G--GTTGAAAT-TT--TTTCAACCTA-TTG-TA--------TCACAATGAAAG--------------------------------------G--TC-----TGTTGTCACCTTGACTT-TTGATAT---CATGAT-CT------AAAA----AA-CT----G-CAAG----AT--CTTC--C---TTT-A-------A-T-----CA-----TCACAT---ACTATAATTAATAATCTGT-AAAA-TAAGAAAGCTTTA---T---GAAAAAA-----GTTTTtgcgatggacaaactcacaaacacaca
gi|13 : ------ATA--AA------CAGC-TATCTTT-------GCATAAAA-TAT----------------T----AGAGT---T-TATTTC--GTTGAAAAACA--TT--AATTTAAAAGATGGACAGAAGTCACAATAAAAAT-AT--ACATTTAAACTG-----T--GGG-ATTG-AG-GA-TT-----TG--GTGAC-TTGACCT-TTGACCT---CATGGC-TC------CAAATTGCAT-ATAAG-G-A-------GT--CCTC--C---TTT-A-------A-T-----GG-----TCA------ACTACTTTTG------T-T-AAAA-c
gi|14 : -TTGACCT---CATGAC-CC------AAAA----AT-GT----G-CAG-----GTAATTTT--C---TTT-A-------A-T-----AA-----ACA------GCTATCTTTG------CAT-AAAA-TATTAGAG-TTTA---TTTCGTTGAAA-----
gi|15 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatc-CC------CAAA----AC-CT----G-C-------A---CTTC--TATGTTC-T-------A-T-----GGCAGGATCA------ACCATCTTTG------TAA-AAAC-TATGAAAGCTa
gi|16 : tcactccagaaacttgatttatacttcatatgtacaggtactaatgacaaagaattcattaatgttgtaataatggcagagagctgtaattatgttctttaAA----AT-TT----A-C-------GT-------------TT-A-------A-T-----A--------A------ACTACCTTTA------TGC-GGAA-AATGAAAGTTAAA---T---GATGAAA-----AGTTTTCAAGAT-GCT-GT---ATAATAATGAAc
gi|18 : tcaagatgctgagtcacaacaaaaatagtaggacagacaaacaaccacagccaacACTTA-TCA-AA--------TCATAATGAAAAC-AT--AG---TAAA--C-----TTAGAG-ATTG-AAAG--TC-----CATTTTGACCTTGACCG-TTGACTT---CATGAC-CG------TAAATTTCAT-AA----G-G-------GT--CTCT--C---TTT-A-------A-T-----GG-----TAA------ACTACATTTG------TAT-AAAA-TATGAAAGcatgtatcaaactttgattgaaagcc
gi|19 : gTCAATTTA-TCA-TG--------TCCTAATGAAAAT-AT--GG---TAAA--G------------------G-G--T------------------GACTA-TTGATCT---CGTAAC-TC------CAAA----AT-CT----GAT-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTAACTTTG------TAT-GAAA-TATAAAAGC
gi|2 : gctacctacttgcaTGACCTTTGACCCCATGACCGAAAATTC-TCTAGGTGTTTTTT-TTTCAG---TATT----CTTATTCCTTTACT--GCCA-GTAAAACTTGTAAAACTT
gi|2 : ctttgatctT--TTTTATTTCAAT-G-TG--------TCACAATCAA-GC-AT--AG---C-----G-----T--GAG-ATTG-AC-GATTT-----TGGTATGGCCTTGATCT-TTAACTT---CATGAT-TTTTAGAACAAA----ATACTA---G-TTTTTAAAAT--CTTC--A---TCT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-TTAA-TATAAATGTTTTA---T---ATTGAAA-----GCTATTCAAGAT-ATC-CT---GCCACAATGAAAgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataata-CT----G-G-------GT--CCTA--C---TTT-ATCATGTTA-T-----GG-----TCA------ACT-CCT--A------CAC-AAGA-TTTGAAATTGTTACCAT---GTTCAAATTAAGGTTGTTTTAATT-CTT-GT---GTCACGATAAActgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|20 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgT-----TAACATACTTTT-------GTATAAAA-TATGAA------------------AGGGTTACC-TA---G--GTC-AAAA-CT--TTTCAACTT-ATTG-TG--------TCAAAACAAAAGC-AT--GA---TACA--C-----TTAAAA-ATTGAAG-G--TC-----TACTGTtatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|3 : TTGAA-AACTATTCAAAATATCAAGTCCCAAAGAA-A-GAGATGA-----TGAACAAACAGACAACAGACATTAATGAAGCCAACAGACCGAT-------GCCCATAA-TATAAAACTTCCTTTATTTTG---AAAGT-----TA---CATGTTGGAAAGTT--TTTTGAGATAAT-G-TG--------TCACAATGAAAAC-GA--AT---TAAA--C-----T--TGG-AATGAAG-G--CC-----TGGTGTGGTGTTG-CTC-TTGACAC---CAC-ACACA------CAAA----A------------------------------------A-------A-A-----G------------------ACCTTTT------CAC-AAAA-CATGAAAGCTCTA--------------------CTTTTCAACTT-A----T---GTCATAATGAAAG
gi|3 : tttctTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TGA-AAAACaatagtaaaggtctgttgtgaccttgaccttatgactacaatatatgtaggtgtcttctatttaatagcaaattacatttgctaataacacgtgaaagctttatattgaaaacttcaaaatattgtgtcacaacaaattgaggatgaaaaac
gi|4 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TGA-AAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GTATAAAA-TATAAA-------------TATAGAAGGC---T-TA---C--GTTGAAAA-CT--TTTCAACTTAATTA-TG--------TCACACTGAAAGC-AT--AG---TAAT--G-----TCAGAG-ATTGTAT-A--TC-----TGTTGTGACCTTGACCT-TTAACCT---AATCAC-CC------TAAA----AT-CT----G-T-------GT--CTAC--C---TTT-G-------A-T-----GT-----TCA------ATTATCTTTC------TATCAAAA-TAGGAAAGCTTTG---T---GTTGAAA-----ACTATTCATATT-ATT-TT---ATCACAATGAAAGT
gi|5 : GTGTTAT-TTT-AA---TAGTCAGGC-AATTATTTT--T--G-TA-A-AAAATATA-AAAGTTTTATACTG-A-AAC-ATTCAAGACATCATATCACAATGAA----AGC-GA-----TGA-CAGACAG
gi|6 : tctgaa-TACCCTT-----------AAAA-TATGAT-------------T------GGT---C-TT---T--ATTGAAAA-CT--TC-CATCTTA-TCC-TG--------TCATAAGTTAAG--AT--AG-------------------AG-A----AG-G--TC-----TATTGAGACCTTGACCA-TGTACCT---TATGAA-CC-------GAT----AT-CTATAGG-T-------GT--CTCC--T---TTT-C-------A-T-----GA-----TCA------AGTACATTTG------CAT-AAAA-TCC-AAAGTTTTA---A---GTTGAAA-----ATGATTACAGATTATC-GT---GTCACAACCAAAGccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|6 : AT-----CAAG-TACATTT-------GCATAAAA-TCCA--------------------AAGTT---T-TA---A--GTTGAAAA--TGATTACAGATT-ATCG-TG--------TCACAACCAAAGCGATGAAGT--TAAA--G-----C---AG-ACTG-Acgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|7 : tacccttaaaatatgattggtctttattgaaaacttccatcttatcctgtcataagttaagatagagaaggtctattgagaccttgaccatgtaccttatgaaccgatatctataggtgtctccttttcatgAA--GGTCTGTTGAAGCCTT-G----------CAAAAAAGGCTACAGGTGCCTTTC-TTC-AAAGATTGT----C----TACCTT--T--AC---ATAAAATATA-AAAGCCTTTTCTTGAAAAAT-GTGGAAGATACCAAGT-ATGATGAA-T---GC-GA-----TAA-CCAACAGA------caatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|9 : gcaatgacagaatggatagagtgattatgttcatttacagatatgcatttccatatatcaactatgttagtatcatatataaaagctccaagtgtaatactcttattgagA--GAT-----CATC-TACCACA-------GGAGGAAA-TATAAA-------------------AGGT---CATA------GTTGAAAA-T-------------ATCA-GG--------TCACAATGAAAGA-AT---------AA--C-----T--GA--ATGA-AG-A--CC--------TGTGATCTTGACCTCCTGACCTTTACATG-C-TT---------A----AT---------T-------AT--CTTT--C---TTG-A-------A-T-----GG-----ACA------ACTTCCCAAG------TAT-GAAA-TTTGAAAGCTTTA---T---GTTGAAA-----GCCATTCAAGAT-ACA-AT---GTCACAATGAAAGTcagacagacatatacaaaaatctgtaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC
Alignments
lowQualScore : 1 11 11 1 111 2222222 11111 22 22222222 11111 111111 11 111111 11111111111 5555555555555555555555 11111 111111 11111 11 11111111 666666666666666666666666666666666666666666666666666 1111111111 33333333333333333333333 111111111111 111111 1111111 111
lowQualScore : 3 88 33 2 1 8 0 5 8 1 8 1 0 3 6 111 2222222 1 11111 22 6 3 6 1 6 55 0 11 77777777 66666 6 999999 11 333333 8 44444444444 4 8888888888888888888888 33333 888888 22222 3 1 44 555 11111111 0 000000000000000000000000000000000000000000000000000 0 1 3 555 0 3333333333 77777777777777777777777 33 888888 2 7777777 2 000000000000 000000 666666 2 2 0 1 0000000 88888 1 33 4 000 777
lowQualScore : . .. .. . . . . . . . . . . . . ... ....... . ..... .. . . . . . .. . .. ........ ..... . ...... .. ...... . ........... . ...................... ..... ...... ..... . . .. ... ........ . ................................................... . . . ... . .......... ....................... .. ...... . ....... . ............ ...... ...... . . . . ....... ..... . .. . ... ...
lowQualScore : 3 33 88 5 0 0 8 6 8 4 0 4 3 3 7 777 7777777 0 88888 77 7 7 7 4 7 33 3 77 33333333 77777 7 222222 00 000000 0 33333333333 0 5555555555555555555555 33333 222222 22222 3 4 00 777 22222222 2 555555555555555555555555555555555555555555555555555 4 4 3 888 4 6666666666 55555555555555555555555 11 666666 2 2222222 2 111111111111 333333 444444 2 2 6 4 2222222 33333 0 77 0 222 000
consensus : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
Reference ( family-7567 ) : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
gi|1 : AA----AT-TT----C-C-------AT--CTTCAAC---TGC-A-------G-------AA-----TCA-------CTATCTTTG------TGT-AAAA-TATAAAAG
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagATAAAAGATATTTAGCAAAAAGATCT------ACTTT-AACCTT-TGACCA-AAAATA-TATAGATATCTTTG-TTT-GA---TGAT----C-AGCTTCTTT--CAAATTACATAAAATTGG-AAAGCTTTTTGTTGAA-AACTGTCCAATATATAAAATCACAACAAAGTTGAG--GACAGCTTGA-CAGACAGA------atatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatA------ACA--AA------CGAC-TATCTTT-------CTGAAGAA-TATGAA-------------------AGCT---G-CA---T--GCTGAAA--TT--TCTCAAGATA-TTG-TG--------TT-CAATTAAA----C--AA---CAAG--GACTACT--GAGTAT---AT-G--TC-----CACTGTGACCTTGACAT-TTGACTG---TGAGAT-AT------CAAA-----T-CT----G-TAGGA---GT--TTTC--C---TTT-A-------AAT-----AA-----TTACATTTAACTGCCTTTG------CAA-AAAAATATCTAAGATCTA---C---ACAGAAA-----ACTTTTCAACTT-ATC-AT---GTCACAATGAAAGcagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttT-----TAAC-TGCCTTT-------GCAAAAAAATATC---------------T----AAGAT---C-TA---C--ACAGAAAA-CT--TTTCAACTTA-TCA-TG--------TCACAATGAAAGC-AC--AG---TAAA--G-----T--TAC-ATT--------TCGACAATGTTTTG----TAACAT-TC-ACCC---CATG------------AAA----GT---------C-------AT---TTT--T---TTT-A-------A-T-----AG-----CCA------ACAATTTTTG------CAT-CAGA-TATATAAGTTTTA---T---ATTGAAA-----ATGATTCAAAAT-ATCAAT---GCCCCAATAAAcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|10 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatC------CAAA----AT-CT----G-C-------A---CTTC--TATTTTC-A-------A-TTGCAGGA-----TCA------ACAACTTTAG------TAT-A-AA-TATAAAAGCTCTtttgatgatagacaca
gi|10 : tgctctgttC------TAAA----AT-CTTCTAG-T-------GT--TCTC--C---TTTTA-------A-T-----GA-----TCA------GTTACTTATG------TAT-AAAA-CATGAAAGTCTTT---T---CTTGAAA-----GCTGTTCAATAT-ATT-TTAAAATCACAACAAAtggtgtaataaaattagtggaactgtttgttgtaactaaaatcttctagtgttctccttttaatgatcagttacttatgtataaaacatgaaagtcttttcttgaaagctgttcaatatattttaaaatcacaacaaatgcgatggacaaactcacaaacacaca
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaAT-----CAAT-CACCTTTTATCATTGTTTCAAA-TATGAA-------------------AGGT---C-TA---G--GTTGAAAT-TT--TTTCAACCTA-TTG-TA--------TCACAATGAAAG--------------------------------------G--TC-----TGTTGTCACCTTGACTT-TTGATAT---CATGAT-CT------AAAA----AA-CT----G-CAAG----AT--CTTC--C---TTT-A-------A-T-----CA-----TCACAT---ACTATAATTAATAATCTGT-AAAA-TAAGAAAGCTTTA---T---GAAAAAA-----GTTTTtgcgatggacaaactcacaaacacaca
gi|13 : ------ATA--AA------CAGC-TATCTTT-------GCATAAAA-TAT----------------T----AGAGT---T-TATTTC--GTTGAAAAACA--TT--AATTTAAAAGATGGACAGAAGTCACAATAAAAAT-AT--ACATTTAAACTG-----T--GGG-ATTG-AG-GA-TT-----TG--GTGAC-TTGACCT-TTGACCT---CATGGC-TC------CAAATTGCAT-ATAAG-G-A-------GT--CCTC--C---TTT-A-------A-T-----GG-----TCA------ACTACTTTTG------T-T-AAAA-c
gi|14 : -TTGACCT---CATGAC-CC------AAAA----AT-GT----G-CAG-----GTAATTTT--C---TTT-A-------A-T-----AA-----ACA------GCTATCTTTG------CAT-AAAA-TATTAGAG-TTTA---TTTCGTTGAAA-----
gi|15 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatc-CC------CAAA----AC-CT----G-C-------A---CTTC--TATGTTC-T-------A-T-----GGCAGGATCA------ACCATCTTTG------TAA-AAAC-TATGAAAGCTa
gi|16 : tcactccagaaacttgatttatacttcatatgtacaggtactaatgacaaagaattcattaatgttgtaataatggcagagagctgtaattatgttctttaAA----AT-TT----A-C-------GT-------------TT-A-------A-T-----A--------A------ACTACCTTTA------TGC-GGAA-AATGAAAGTTAAA---T---GATGAAA-----AGTTTTCAAGAT-GCT-GT---ATAATAATGAAc
gi|18 : tcaagatgctgagtcacaacaaaaatagtaggacagacaaacaaccacagccaacACTTA-TCA-AA--------TCATAATGAAAAC-AT--AG---TAAA--C-----TTAGAG-ATTG-AAAG--TC-----CATTTTGACCTTGACCG-TTGACTT---CATGAC-CG------TAAATTTCAT-AA----G-G-------GT--CTCT--C---TTT-A-------A-T-----GG-----TAA------ACTACATTTG------TAT-AAAA-TATGAAAGcatgtatcaaactttgattgaaagcc
gi|19 : gTCAATTTA-TCA-TG--------TCCTAATGAAAAT-AT--GG---TAAA--G------------------G-G--T------------------GACTA-TTGATCT---CGTAAC-TC------CAAA----AT-CT----GAT-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTAACTTTG------TAT-GAAA-TATAAAAGC
gi|2 : gctacctacttgcaTGACCTTTGACCCCATGACCGAAAATTC-TCTAGGTGTTTTTT-TTTCAG---TATT----CTTATTCCTTTACT--GCCA-GTAAAACTTGTAAAACTT
gi|2 : ctttgatctT--TTTTATTTCAAT-G-TG--------TCACAATCAA-GC-AT--AG---C-----G-----T--GAG-ATTG-AC-GATTT-----TGGTATGGCCTTGATCT-TTAACTT---CATGAT-TTTTAGAACAAA----ATACTA---G-TTTTTAAAAT--CTTC--A---TCT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-TTAA-TATAAATGTTTTA---T---ATTGAAA-----GCTATTCAAGAT-ATC-CT---GCCACAATGAAAgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataata-CT----G-G-------GT--CCTA--C---TTT-ATCATGTTA-T-----GG-----TCA------ACT-CCT--A------CAC-AAGA-TTTGAAATTGTTACCAT---GTTCAAATTAAGGTTGTTTTAATT-CTT-GT---GTCACGATAAActgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|20 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgT-----TAACATACTTTT-------GTATAAAA-TATGAA------------------AGGGTTACC-TA---G--GTC-AAAA-CT--TTTCAACTT-ATTG-TG--------TCAAAACAAAAGC-AT--GA---TACA--C-----TTAAAA-ATTGAAG-G--TC-----TACTGTtatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|3 : TTGAA-AACTATTCAAAATATCAAGTCCCAAAGAA-A-GAGATGA-----TGAACAAACAGACAACAGACATTAATGAAGCCAACAGACCGAT-------GCCCATAA-TATAAAACTTCCTTTATTTTG---AAAGT-----TA---CATGTTGGAAAGTT--TTTTGAGATAAT-G-TG--------TCACAATGAAAAC-GA--AT---TAAA--C-----T--TGG-AATGAAG-G--CC-----TGGTGTGGTGTTG-CTC-TTGACAC---CAC-ACACA------CAAA----A------------------------------------A-------A-A-----G------------------ACCTTTT------CAC-AAAA-CATGAAAGCTCTA--------------------CTTTTCAACTT-A----T---GTCATAATGAAAG
gi|3 : tttctTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TGA-AAAACaatagtaaaggtctgttgtgaccttgaccttatgactacaatatatgtaggtgtcttctatttaatagcaaattacatttgctaataacacgtgaaagctttatattgaaaacttcaaaatattgtgtcacaacaaattgaggatgaaaaac
gi|4 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAA-TTGAG--GA-----TGA-AAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GTATAAAA-TATAAA-------------TATAGAAGGC---T-TA---C--GTTGAAAA-CT--TTTCAACTTAATTA-TG--------TCACACTGAAAGC-AT--AG---TAAT--G-----TCAGAG-ATTGTAT-A--TC-----TGTTGTGACCTTGACCT-TTAACCT---AATCAC-CC------TAAA----AT-CT----G-T-------GT--CTAC--C---TTT-G-------A-T-----GT-----TCA------ATTATCTTTC------TATCAAAA-TAGGAAAGCTTTG---T---GTTGAAA-----ACTATTCATATT-ATT-TT---ATCACAATGAAAGT
gi|5 : GTGTTAT-TTT-AA---TAGTCAGGC-AATTATTTT--T--G-TA-A-AAAATATA-AAAGTTTTATACTG-A-AAC-ATTCAAGACATCATATCACAATGAA----AGC-GA-----TGA-CAGACAG
gi|6 : tctgaa-TACCCTT-----------AAAA-TATGAT-------------T------GGT---C-TT---T--ATTGAAAA-CT--TC-CATCTTA-TCC-TG--------TCATAAGTTAAG--AT--AG-------------------AG-A----AG-G--TC-----TATTGAGACCTTGACCA-TGTACCT---TATGAA-CC-------GAT----AT-CTATAGG-T-------GT--CTCC--T---TTT-C-------A-T-----GA-----TCA------AGTACATTTG------CAT-AAAA-TCC-AAAGTTTTA---A---GTTGAAA-----ATGATTACAGATTATC-GT---GTCACAACCAAAGccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|6 : AT-----CAAG-TACATTT-------GCATAAAA-TCCA--------------------AAGTT---T-TA---A--GTTGAAAA--TGATTACAGATT-ATCG-TG--------TCACAACCAAAGCGATGAAGT--TAAA--G-----C---AG-ACTG-Acgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|7 : tacccttaaaatatgattggtctttattgaaaacttccatcttatcctgtcataagttaagatagagaaggtctattgagaccttgaccatgtaccttatgaaccgatatctataggtgtctccttttcatgAA--GGTCTGTTGAAGCCTT-G----------CAAAAAAGGCTACAGGTGCCTTTC-TTC-AAAGATTGT----C----TACCTT--T--AC---ATAAAATATA-AAAGCCTTTTCTTGAAAAAT-GTGGAAGATACCAAGT-ATGATGAA-T---GC-GA-----TAA-CCAACAGA------caatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|9 : gcaatgacagaatggatagagtgattatgttcatttacagatatgcatttccatatatcaactatgttagtatcatatataaaagctccaagtgtaatactcttattgagA--GAT-----CATC-TACCACA-------GGAGGAAA-TATAAA-------------------AGGT---CATA------GTTGAAAA-T-------------ATCA-GG--------TCACAATGAAAGA-AT---------AA--C-----T--GA--ATGA-AG-A--CC--------TGTGATCTTGACCTCCTGACCTTTACATG-C-TT---------A----AT---------T-------AT--CTTT--C---TTG-A-------A-T-----GG-----ACA------ACTTCCCAAG------TAT-GAAA-TTTGAAAGCTTTA---T---GTTGAAA-----GCCATTCAAGAT-ACA-AT---GTCACAATGAAAGTcagacagacatatacaaaaatctgtaga
blockSeqs : . . . G T T A A A C C A C AGA CAGGCA T ACT CC . T T A A TA AA AGAGAT . A CAACAG TT TGAAGC A TATCATTGTTT A AAAACTTCCTTTATTTTGA TACC TTTC ACA T C AA AGA GACAGAAG TATACATTTAAACTGTGGGATTGAGGATTTG C C TTA TTTTAGAAC ATACTAGTTTTTAAA AA TATT T TCATGTT A TGCAGGA CATTTA ATAATC C A T TTTC TTAAG A AA T CAA AAA
blockSeqs : . . . G T . A C T . G A . . CTT A T CT . G . A . A GT TTGAG . . . . T A GCAA . AAATATAGA CA CAT GTT T C AA CA . CATAGTAAACTTAGAGATTGAAAGTCCAT C . . ACAC TTGCATATAAGGA . TATG . . . GGCAGGA CAT . . . C CCAT . G TA . TT .
blockSeqs : . G T . A C T . G . . . AA A T CT . G . A . G GT TTGAG . . . . T . GCAT . GAAA C C TGA T T AA TG . CATGATACACTTAAAAATTGAAGGTCTAC C . . CTA ATCTTCTAGT . C . . . AA . . . . T T . T GA . TG .
blockSeqs : A . . A A . A . . . AA T T T . A . T . . AT AGC . . . . T . GTAT . GATT C G CT T C AA CA . CATAGTAATGTCAGAGATTGTATATCTGT G . . TCC TTTCATAAGG . T . . . AG . . . . C T . T GA . CC .
blockSeqs : . . . C C T C . A . . . AA TGC . . . T . GCCC . CTA T G TT T T A CA . CACAGTAAAGTTACATTTCGACAATGT C . . CCA ATCTATAGGT . C . . . GA . . . . C T . A AT . TG .
blockSeqs : T . GTAT . GAA T C CT T T A TG . CGAATTAAACTTGGAATGAAGGCCTGG C . . CCC TCTGTAGGA . C . . . CA . . . . T T . G CT . TT .
blockSeqs : T . GCAT . AAA C T CT T C A TA . CATAGCGTGAGATTGACGATTTTGG C . . CGT AACTGCAAG . C . . . GG . . . . C T . T AT . CG .
blockSeqs : . . GGAG . TA T A CT A G A CC . AATAACTGAATGAAGACC . . . TCC ATGTGCAG . C . . . AA . . . . T T . A GA . AA .
blockSeqs : . . . AA . . T . C A CG . ATAGAGAAGGTCTAT . . . CCT ATCTGAT . C . . . GG . . . . T A . A GA . . .
blockSeqs : . C A CA . TATGGTAAAGGGT . . . CC ATCTGC . C . . . GG . . . . C T . A
blockSeqs : . A A G . GTCTGT . . TT ACCTGC . A . . . GG . . . . C . .
blockSeqs : . A G . . ATTTAC . C . . . GG . . . . T
blockSeqs : ATCTGT . C . . . GT . . . . C
blockSeqs : GTC . T . . . GA . . . . .
blockSeqs : ATT . C . . . GG . . . .
blockSeqs : A . . . . . A . . . .
blockSeqs : . . . . . G . . . .
blockSeqCons : T**** G* TGAG**** ***** T***** C*****
originalCons : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA-TTGAG--GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
finalCons : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTTT----GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AACG-TTCAAAATATCGNGTCACAACGAATGAG----GA-----TGA-CAAACAGA------ACA--AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA-------------T----AAGGT---C-TA---C--GTTGAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTCC-----TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTTA---T---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC
Alignments
lowQualScore : 1 11 11 1 111 2222222 11111 22 22222222 11111 222222 111111 11111111111 5555555555555555555 11111 111111 11 11111111 666666666666666666666666666666666666666666666666666 1111111111 33333333333333333333333 111111111111 111111 111
lowQualScore : 3 88 33 2 1 8 0 5 8 1 8 1 0 3 6 111 2222222 1 11111 22 6 3 6 1 6 55 0 11 99999999 66666 6 99 333333 333333 8 44444444444 4 8888888888888888888 33333 888888 4 88888 3 1 44 555 11111111 0 000000000000000000000000000000000000000000000000000 0 1 3 555 0 3333333333 77777777777777777777777 33 888888 2 7777777 2 000000000000 000000 666666 2 2 0 1 555 555 88888 1 33 4 000 777
lowQualScore : . .. .. . . . . . . . . . . . . ... ....... . ..... .. . . . . . .. . .. ........ ..... . .. ...... ...... . ........... . ................... ..... ...... . ..... . . .. ... ........ . ................................................... . . . ... . .......... ....................... .. ...... . ....... . ............ ...... ...... . . . . ... ... ..... . .. . ... ...
lowQualScore : 3 33 88 5 0 0 8 6 8 4 0 4 3 3 7 777 7777777 0 88888 77 7 7 7 4 7 33 3 77 33333333 77777 7 22 000000 000000 0 33333333333 0 5555555555555555555 33333 222222 0 22222 3 4 00 777 22222222 2 555555555555555555555555555555555555555555555555555 4 4 3 888 4 6666666666 55555555555555555555555 11 666666 2 2222222 2 111111111111 333333 444444 2 2 6 4 444 888 33333 0 77 0 222 000
consensus : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA--TGAG--GA-----TG-ACAAACAG--AACA------AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA--T------------AAGGT---C-TA---C--GTT-GAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTT---AT---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
Reference ( family-7567 ) : TATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACCANAAAATA-TGTAGGTGTCTTTT-TTT-AA---TAGT----C-AATTACNTT--T--GCTA-ATAAAACGTG-AAAGCTTTATATTGAA-AAC-GTTCAAAATATCGNGTCACAACGAA--TGAG--GA-----TG-ACAAACAG--AACA------AAT-----CAAC-TACCTTT-------GCATAAAA-TATGAA--T------------AAGGT---C-TA---C--GTT-GAAAA-CT--TTTCAACTTAATCG-TG--------TCACAATGAAAGC-AT--AG---TAAA--G-----T--GAG-ATTG-AG-G--TC-----TGTTGTGACCTTGACCT-TTGACCT---CATGAC-CC------CAAA----AT-CT----G-C-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-AAAA-TATGAAAGCTTT---AT---GTTGAAA-----GCTNTTCAAGAT-ATC-GT---GTCACAATGAAAGT
gi|1 : AA----AT-TT----C-C-------AT--CTTCAAC---TGC-A-------G-------AA-----TCA-------CTATCTTTG------TGT-AAAA-TATAAAAG
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagATAAAAGATATTTAGCAAAAAGATCT------ACTTT-AACCTT-TGACCA-AAAATA-TATAGATATCTTTG-TTT-GA---TGAT----C-AGCTTCTTT--CAAATTACATAAAATTGG-AAAGCTTTTTGTTGAA-AACTGTCCAATATATAAAATCACAACAAAGTTGAG--GACAGCTTG-ACAGACAG--Aatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaat--AACA------AA------CGAC-TATCTTT-------CTGAAGAA-TATGAA----------------AGCT---G-CA---T--GCT-GAAA--TT--TCTCAAGATA-TTG-TG--------TT-CAATTAAA----C--AA---CAAG--GACTACT--GAGTAT---AT-G--TC-----CACTGTGACCTTGACAT-TTGACTG---TGAGAT-AT------CAAA-----T-CT----G-TAGGA---GT--TTTC--C---TTT-A-------AAT-----AA-----TTACATTTAACTGCCTTTG------CAA-AAAAATATCTAAGATCT---AC---ACAGAAA-----ACTTTTCAACTT-ATC-AT---GTCACAATGAAAGcagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatttaactgcctttgcaaaaaaatatctaagatctacacagaaaacttttcaacttatcatgtcacaatgaaagcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|1 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttT-----TAAC-TGCCTTT-------GCAAAAAAATATC----T------------AAGAT---C-TA---C--ACA-GAAAA-CT--TTTCAACTTA-TCA-TG--------TCACAATGAAAGC-AC--AG---TAAA--G-----T--TAC-ATT--------TCGACAATGTTTTG----TAACAT-TC-ACCC---CATG------------AAA----GT---------C-------AT---TTT--T---TTT-A-------A-T-----AG-----CCA------ACAATTTTTG------CAT-CAGA-TATATAAGTTTT---AT---ATTGAAA-----ATGATTCAAAAT-ATCAAT---GCCCCAATAAAcacagtaaagttacatttcgacaatgttttgtaacattcaccccatgaaagtcattttttttaatagccaacaatttttgcatcagatatataagttttatattgaaaatgattcaaaatatcaatgccccaataaatttgatgatagacaca
gi|10 : aaccttttgatatcagaaactgaaaaaatgactcaatcaggagaggccttgtggagaacttacttaattcatgtatctaaagtactattactaattacagagaattcattcaatgttggtagtggcagagatgagtttttgtttttcagaaatttccatcttcaactgcagaatcactatctttgtgtaaaatataaaagatatttagcaaaaagatctactttaacctttgaccaaaaatatatagatatctttgtttgatgatcagcttctttcaaattacataaaattggaaagctttttgttgaaaactgtccaatatataaaatcacaacaaagttgaggacagcttgacagacagacagacatatattctgtaggactggtgcacatgcctaattcctttaacaaacgactatctttctgaagaatatgaaagctgcatgctgaaatttctcaagatattgtgttcaattaaacaacaaggactactgagtatatgtccactgtgaccttgacatttgactgtgagatatcaaatctgtaggagttttcctttaaataattacatC------CAAA----AT-CT----G-C-------A---CTTC--TATTTTC-A-------A-TTGCAGGA-----TCA------ACAACTTTAG------TAT-A-AA-TATAAAAGCTCT---tttgatgatagacaca
gi|10 : tgctctgttC------TAAA----AT-CTTCTAG-T-------GT--TCTC--C---TTTTA-------A-T-----GA-----TCA------GTTACTTATG------TAT-AAAA-CATGAAAGTCTT---TT---CTTGAAA-----GCTGTTCAATAT-ATT-TTAAAATCACAACAAAtggtgtaataaaattagtggaactgtttgttgtaactaaaatcttctagtgttctccttttaatgatcagttacttatgtataaaacatgaaagtcttttcttgaaagctgttcaatatattttaaaatcacaacaaatgcgatggacaaactcacaaacacaca
gi|12 : tgctctgttccaaaatctgcacttctattttcaattgcaggatcaacaactttagtataaatataaaagctcttggtgtaataaaattagtggaactgtttgttgtaaAT-----CAAT-CACCTTTTATCATTGTTTCAAA-TATGAA----------------AGGT---C-TA---G--GTT-GAAAT-TT--TTTCAACCTA-TTG-TA--------TCACAATGAAAG--------------------------------------G--TC-----TGTTGTCACCTTGACTT-TTGATAT---CATGAT-CT------AAAA----AA-CT----G-CAAG----AT--CTTC--C---TTT-A-------A-T-----CA-----TCACAT---ACTATAATTAATAATCTGT-AAAA-TAAGAAAGCTTT---AT---GAAAAAA-----GTTTTtgcgatggacaaactcacaaacacaca
gi|13 : ATA------AA------CAGC-TATCTTT-------GCATAAAA-TAT-----T------------AGAGT---T-TATTTC--GTT-GAAAAACA--TT--AATTTAAAAGATGGACAGAAGTCACAATAAAAAT-AT--ACATTTAAACTG-----T--GGG-ATTG-AG-GA-TT-----TG--GTGAC-TTGACCT-TTGACCT---CATGGC-TC------CAAATTGCAT-ATAAG-G-A-------GT--CCTC--C---TTT-A-------A-T-----GG-----TCA------ACTACTTTTG------T-T-AAAA-c
gi|14 : -TTGACCT---CATGAC-CC------AAAA----AT-GT----G-CAG-----GTAATTTT--C---TTT-A-------A-T-----AA-----ACA------GCTATCTTTG------CAT-AAAA-TATTAGAG-TTT---ATTTCGTTGAAA-----
gi|15 : tttgaaatgacagagaggagtgatttatttttcccaaatcaaagttcaactgcaggatcaacaatgtttgtataaaatataaagaggaatc-CC------CAAA----AC-CT----G-C-------A---CTTC--TATGTTC-T-------A-T-----GGCAGGATCA------ACCATCTTTG------TAA-AAAC-TATGAAAGCTa
gi|16 : tcactccagaaacttgatttatacttcatatgtacaggtactaatgacaaagaattcattaatgttgtaataatggcagagagctgtaattatgttctttaAA----AT-TT----A-C-------GT-------------TT-A-------A-T-----A--------A------ACTACCTTTA------TGC-GGAA-AATGAAAGTTAA---AT---GATGAAA-----AGTTTTCAAGAT-GCT-GT---ATAATAATGAAc
gi|18 : tcaagatgctgagtcacaacaaaaatagtaggacagacaaacaaccacagccaacACTTA-TCA-AA--------TCATAATGAAAAC-AT--AG---TAAA--C-----TTAGAG-ATTG-AAAG--TC-----CATTTTGACCTTGACCG-TTGACTT---CATGAC-CG------TAAATTTCAT-AA----G-G-------GT--CTCT--C---TTT-A-------A-T-----GG-----TAA------ACTACATTTG------TAT-AAAA-TATGAAAGcatgtatcaaactttgattgaaagcc
gi|19 : gTCAATTTA-TCA-TG--------TCCTAATGAAAAT-AT--GG---TAAA--G------------------G-G--T------------------GACTA-TTGATCT---CGTAAC-TC------CAAA----AT-CT----GAT-------GT--CTTC--C---TTT-A-------A-T-----GG-----TCA------ACTAACTTTG------TAT-GAAA-TATAAAAGC
gi|2 : gctacctacttgcaTGACCTTTGACCCCATGACCGAAAATTC-TCTAGGTGTTTTTT-TTTCAG---TATT----CTTATTCCTTTACT--GCCA-GTAAAACTTGTAAAACTT
gi|2 : ctttgatctT--TTTTATTTCAAT-G-TG--------TCACAATCAA-GC-AT--AG---C-----G-----T--GAG-ATTG-AC-GATTT-----TGGTATGGCCTTGATCT-TTAACTT---CATGAT-TTTTAGAACAAA----ATACTA---G-TTTTTAAAAT--CTTC--A---TCT-A-------A-T-----GG-----TCA------ACTACCTTTG------TAT-TTAA-TATAAATGTTTT---AT---ATTGAAA-----GCTATTCAAGAT-ATC-CT---GCCACAATGAAAgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|2 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataata-CT----G-G-------GT--CCTA--C---TTT-ATCATGTTA-T-----GG-----TCA------ACT-CC--TA------CAC-AAGA-TTTGAAATTGTTACCAT---GTTCAAATTAAGGTTGTTTTAATT-CTT-GT---GTCACGATAAActgatgacagacaatgtgattcccttctcaatgctgggtcctactttatcatgttatggtcaactcctacacaagatttgaaattgttaccatgttcaaattaaggttgttttaattcttgtgtcacgataaatatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|20 : ctttgatcttgacctttgaccccatgaccgaaaattctctaggtgtttttttttcagtattcttattcctttactgccagtaaaacttgtaaaacttgtaaaacttaataatatttttatttcaatgtgtcacaatcaagcatagcgtgagattgacgattttggtatggccttgatctttaacttcatgatttttagaacaaaatactagtttttaaaatcttcatctaatggtcaactacctttgtatttaatataaatgttttatattgaaagctattcaagatatcctgccacaatgaaactgatgacagacaatgtgattcccttctcaatgT-----TAACATACTTTT-------GTATAAAA-TATGAA---------------AGGGTTACC-TA---G--GTC--AAAA-CT--TTTCAACTT-ATTG-TG--------TCAAAACAAAAGC-AT--GA---TACA--C-----TTAAAA-ATTGAAG-G--TC-----TACTGTtatgcatacagacagccaaacagacggacatacagacaaaacaaccatttcctagaatttcttt
gi|3 : TTGAA-AACTATTCAAAATATCAAGTCCCAAAGAA--AGAGATGA-----TGAACAAACAGACAACAGACATTAATGAAGCCAACAGACCGAT-------GCCCATAA-TATAAAACTTCCTTTATTTTGAAAGT-----TA---CATGTTGGAAAG-TT--TTTTGAGATAAT-G-TG--------TCACAATGAAAAC-GA--AT---TAAA--C-----T--TGG-AATGAAG-G--CC-----TGGTGTGGTGTTG-CTC-TTGACAC---CAC-ACACA------CAAA----A------------------------------------A-------A-A-----G------------------ACCTTTT------CAC-AAAA-CATGAAAGCTCT---A-----------------CTTTTCAACTT-A----T---GTCATAATGAAAG
gi|3 : tttctTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAAT-TGAG--GA-----TG-AAAAACaatagtaaaggtctgttgtgaccttgaccttatgactacaatatatgtaggtgtcttctatttaatagcaaattacatttgctaataacacgtgaaagctttatattgaaaacttcaaaatattgtgtcacaacaaattgaggatgaaaaac
gi|4 : tttctttgaaaactattcaaaatatcaagtcccaaagaaagagatgatgaacaaacagacaacagacattaatgaagccaacagaccgatgcccataatataaaacttcctttattttgaaagttacatgttggaaagttttttgagataatgtgtcacaatgaaaacgaattaaacttggaatgaaggcctggtgtggtgttgctcttgacaccacacacacaaaaaaagaccttttcacaaaacatgaaagctctacttttcaactTATGTCATAATGAAAGA-AT--AGTAAA--GGTCTGTTGTGACCTT-GACCTTATGACTACAATATA-TGTAGGTGTCTTCTATTT-AA---TAGC----A-AATTACATT--T--GCTA-ATAACACGTG-AAAGCTTTATATTGAA-AAC--TTCAAAATATTGTGTCACAACAAAT-TGAG--GA-----TG-AAAAACAG--AACA------AAT-----CAAC-TACCTTT-------GTATAAAA-TATAAA--TATAG--------AAGGC---T-TA---C--GTT-GAAAA-CT--TTTCAACTTAATTA-TG--------TCACACTGAAAGC-AT--AG---TAAT--G-----TCAGAG-ATTGTAT-A--TC-----TGTTGTGACCTTGACCT-TTAACCT---AATCAC-CC------TAAA----AT-CT----G-T-------GT--CTAC--C---TTT-G-------A-T-----GT-----TCA------ATTATCTTTC------TATCAAAA-TAGGAAAGCTTT---GT---GTTGAAA-----ACTATTCATATT-ATT-TT---ATCACAATGAAAGT
gi|5 : GTGTTAT-TTT-AA---TAGTCAGGC-AATTATTTT--T--G-TA-A-AAAATATA-AAAGTTTTATACTG-A-AAC-ATTCAAGACATCATATCACAATGAA----AGC-GA-----TG-ACAGACAG--
gi|6 : tctgaa-TACCCTT-----------AAAA-TATGAT--T--------------GGT---C-TT---T--ATT-GAAAA-CT--TC-CATCTTA-TCC-TG--------TCATAAGTTAAG--AT--AG-------------------AG-A----AG-G--TC-----TATTGAGACCTTGACCA-TGTACCT---TATGAA-CC-------GAT----AT-CTATAGG-T-------GT--CTCC--T---TTT-C-------A-T-----GA-----TCA------AGTACATTTG------CAT-AAAA-TCC-AAAGTTTT---AA---GTTGAAA-----ATGATTACAGATTATC-GT---GTCACAACCAAAGccagggaatattaataaagggcctgaattgatagatgtgcaagaatccactaatggtctaaaaagtgtacaatagtgggacagaattaaatcacatttttagataaaacaaatggtgctaattaatagtccatacctggtggtatctaaatacatgtcgcaatagttggaaaaaaaaaattaaaaatcataaaatcagcaacatttacagatttcagtatatgtcaatgttgacaaaactttaattaacaaga
gi|6 : AT-----CAAG-TACATTT-------GCATAAAA-TCCA-----------------AAGTT---T-TA---A--GTT-GAAAA--TGATTACAGATT-ATCG-TG--------TCACAACCAAAGCGATGAAGT--TAAA--G-----C---AG-ACTG-Acgatgaagttaaagcagactgacaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|7 : tacccttaaaatatgattggtctttattgaaaacttccatcttatcctgtcataagttaagatagagaaggtctattgagaccttgaccatgtaccttatgaaccgatatctataggtgtctccttttcatgAA--GGTCTGTTGAAGCCTT-G----------CAAAAAAGGCTACAGGTGCCTTTC-TTC-AAAGATTGT----C----TACCTT--T--AC---ATAAAATATA-AAAGCCTTTTCTTGAAAAAT-GTGGAAGATACCAAGT-ATGATGAA--TG-C--GA-----TA-ACCAACAG--Acaatgagattcctgtaggactgctgtatttttaatgcaggccctaataaa
gi|9 : gcaatgacagaatggatagagtgattatgttcatttacagatatgcatttccatatatcaactatgttagtatcatatataaaagctccaagtgtaatactcttattgagA------GAT-----CATC-TACCACA-------GGAGGAAA-TATAAA----------------AGGT---CATA------GTT-GAAAA-T-------------ATCA-GG--------TCACAATGAAAGA-AT---------AA--C-----T--GA--ATGA-AG-A--CC--------TGTGATCTTGACCTCCTGACCTTTACATG-C-TT---------A----AT---------T-------AT--CTTT--C---TTG-A-------A-T-----GG-----ACA------ACTTCCCAAG------TAT-GAAA-TTTGAAAGCTTT---AT---GTTGAAA-----GCCATTCAAGAT-ACA-AT---GTCACAATGAAAGTcagacagacatatacaaaaatctgtaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATATATCAGGTTTTTATTATCGTTCGTGTTATACTTCATATTCTGATTAAAAAACAAAACAAGGCTGATTTAGCCTGTTTTGTATTTGCTACCCAAAAACTAATCAGTCAGGAGGGGCTCCATAGAGAACTTAATTCGCATATTAAAAGTACTAAATTAATGACACAGAATTCAGTAATGTTTACAAAGACAAAAGGAAGTGATTATGGTCTTTTCCTAAATCTGCATTTCCATATTTAACTGCAGGATCATCTACAGAACCTTTATAAA
Unaligned ( gi|11 ): ATATGCAAGCATTCACTAATGAAGCAAAACGTGTGACAATGGTGGGGAAAAAAATAAAATAATTACTAAAGCAATGGTCTATCCTTTGTGGTATTAGAAAATATTTTGCAATAGTTAAAAACAAAGTTTGGAAAATCATAGAATCGGCATATCATTAGAGAACTACATATTTTACAGTATGTAACCTTGACAGGATATCATATGAAAAAG
Unaligned ( gi|17 ): AGGGTCCTACGGAGAACTTAATTAATTCATGAAGTAATGTCCTAATGACACGGAATCACTAATGATTTTAAAGACAGAGTCCTAATTATTGTCTTATGTAATTATTTTCCCAAATTTGCATTTTTATGTTCAACGACAGGATCAAAC