lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77777777777777777777777777777777777777777777777777777777777777 22222222 4444 1 1111 111 4444444444444444444 11111 55555555555555555555555555555555555555555555555555555555555555555555 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333333333333333333 2222222222222 1 11 1111 3333333 11 111 111111 22222222222 11 111 111111 111 11111 2222222 3333333333333333333333
lowQualScore : 6 3 8 3 6 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555555555555555555555555 5 66666666 4 888 5555 1 5 5 2222 333 7777 4444444444444444444 44444 00000000000000000000000000000000000000000000000000000000000000000000 6 6 6 111 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777 22222222222222222222 4 66 8 777 2222222222222 1 66 4 4 4 2 9999 9999 4 4 3 777 00 3333 8888 4 777 4 55 0 5 4 4 0000000 777 5 5 0 2 6 33 5 5 888 66 333 4 4 2 777 4 222222 4 55555555555 00 4 4 444 0 4 9999 4 222222 444 22222 55 9999999 4 55 44 3333333333333333333333 7 22 33 4
lowQualScore : . . . . . . ............................................................................................... .............................................................. . ........ . ... .... . . . .... ... .... ................... ..... .................................................................... . . . ... . ................................................................................................... ... .................... . .. . ... ............. . .. . . . . .... .... . . . ... .. .... .... . ... . .. . . . . ....... ... . . . . . .. . . ... .. ... . . . ... . ...... . ........... .. . . ... . . .... . ...... ... ..... .. ....... . .. .. ...................... . .. .. .
lowQualScore : 0 8 0 2 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00000000000000000000000000000000000000000000000000000000000000 0 77777777 4 000 1111 4 7 7 1111 111 4444 3333333333333333333 33333 77777777777777777777777777777777777777777777777777777777777777777777 7 7 7 777 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 00000000000000000000 4 11 9 888 0000000000000 8 11 4 4 4 0 4444 4444 4 4 3 888 66 9999 5555 0 000 0 55 8 8 4 4 6666666 000 0 0 1 0 2 88 0 0 888 99 222 4 0 0 888 4 888888 4 00000000000 66 4 4 333 1 4 4444 4 888888 444 55555 55 9999999 0 00 22 0000000000000000000000 7 99 11 0
consensus : GAAGTTTTTAAATCTA-TGTGGAATCAGAGA-CATATAGTATTTATGTCTCTGATGTGGAAGTCTCACGTAGCACAGATTCATCCCCTCTTGGTCTTTTCTCTTAACTCGTAATTGCGNAAGTGTTAGTACCAAAAAAGTGCAGATCTNNGCGNCNACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCTC-TA-T-GGATTTTTTTT---AAAGAT-CATATT-CTA-GAGGG----TTA-G-TA-CT-ACTAAA-------------------TTTAGCTCAGATT-----TCTAGTTTGAAAGNTANCAGCTGNCCTAGCTTGATCTAATACAGTGTGGACTGTTCCGGGAAGGGGCCCTTGCTTC---TCCCG-TC-G-AGGCCT-C-TAGCG--T--GC-----------G------NAG---TT----G-A-C-G-C----GAC-C--------T-CTA-ATA---ATAGAAATGA------C-------CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--CCC----AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTCT------ATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCATA-AGAAA-CCTTT---T-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC----C-C------ACAA-TNCCCAGC-GAC-G--CAC-----GCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--G--CGGGCTGACANAT
Reference ( gi|4 ) : GAAGTTTTTAA-TCTA-TGTGGAA-CAGAGA-CATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAA-----------AAAAAAATGCAG--TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAA-TCGCTA--------TCATTTTCTT-TA-T-GGATTTTTTTTTT-AAAGAT-CATATT-CTA-GAGGG----TTA-G-TA-CT-ACTAAA-------------------TTTAGCTCAGATT-----TCTAGTTTGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---TCCCG-TC-G-AGGCCT-C-TAGCG--T--GC-----------G------TAG---TT----G-A-C-G-C----GAC-C--------T-CTA-ATA---ATAGAAATGA------C-------CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--CCC----AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTCA------ATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCATA-AGAAA-CTTTT---T-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC----C-C------ACAA-TTCCCAGT-AAC-G--CAA-----ACGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--G--CGGGCTGACAAAT
gi|3 : GAAGTTTTTAAATCTACTGTGGAATCAGAGA-CATATAGTATTTATGTCTCTGATGTGGAAGTCTCACGTAGCACAGATTCATCCCCTCTTGGTCTTTTCTCTTAACTCGTAATTGTGAAAGTGTTAGTACCAAAAAAATGCAG--TTCTGTAACGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTAAGAA-TCGCTAAGCGCTATTCATTTTCTT-TA-TTGGATTTTTTTTA--AAAGATTCATATT-CTACGAGGG----TTAAG-TA-CT-ACTAAA-------------------TTTAGCTCAGATT-----TCTAGTTTGAAA----ACAGCTGACCTAGCTTGATCTAATACAGTGTGGACTGTTCCGGGAAGGGGCCCTTGCTAC---TCCCG-TC-G-AGGCCT-CCTCGCG--T--GC-----------G------TAAGCTTT----G-A-C-G-C----GAC-C--------TTCTATATA---ATAGGAATGA------CT------CTCTT---ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-CCCA---AAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTCT------TATGGG--TTTTCCTTAT-ATCATAG-TTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-TATCATA-AGAAA-CCTTT---TGTAA------TGTCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCACTTCACCAC-C------GCAG-ATCCCAATCAAC-GGCC--------CGCAGTT-CAA--G-ATAA-AC-------C-C-ACAA-T-AATATGTCAGCCC--G--CGGGCTGACA
gi|12 : aGAAGTTTTTAAATCTA-TGTGGAA-CAGAGAGCATA
gi|10 : tgcacgaatgaagaaaGAAGTTTTTAA-TCCA-TGT-GAA-CAGAGA-gtagttatatggaagtctcagtacacgatttcatcccctcttgtttggttcctcttaacttcgtatttttgaaagggttagtacccaaaaaatgcagtctgtacgccaagcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|1 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaAGGTTTTTAA-TC-A-TGTAGAATCAGAGA-CATAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|2 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaTTTTTTA-TCTA-TGTGGAA-CAGAGA-CATATagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|5 : agaagtttttCCCAA-----------AAAAAAGTGCAGATCTGGACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTTAGAA-TCGCTAG-------TCGATGTCTT--A---GGATTTTTA-----AAAGATTCATATTTCTA-GAGGG----GTA---TAGCTAACAAAA---------------------TAGCTT---TTTTCGATCTAG-TTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|8 : gaaacgtgttataAAGAA-TCGTTA--------TCAATTTCTT-TA-T-cgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|1 : ggacctgtccggaagcggccttgctaaactgcgacgccgcgtcggcgcctctagcgagtgcgtagtcttgcgaccgcactggacctctaatatatagccatgaattaaacctcttctatgaccgcgagtcttatttcttgagaaaaaatagttatgtgatacatgtacctcattcccAAGAA-TCGCTA--------TCATTTTCTTCTA-T-GGATTTTTTTTT--AGGGAT-CATATT-CTT-G-GGG----TTA-GATA------TCAA-------------------TTTAGCTCAGATT-----TCTAGTTTGAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCTCCCG-TCTGCAGGCAT-C-TAGTG-----GCAGACAAATTTGG------AAG---TT----GGA-C-G-C----GAT-CGCCGAGACT-CTA-TCT---ATAGAA-TGA------A-------TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--TCC----AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTCT------ATTGAGGTTTTT-CTTAT-ATCATAG--TAAAGCGTGTTGAT-GT-CA---CTGAA--CTTC---TCATA-AGAAC-CTTTT---T-TAAATTCCCT-TTAGATT--TA-------AATTTTTTT--TCGTT-ATAT-AAA-TTC----C-C------ACAA--ACCCAGCGGAT-G--CAC-----GCGC-GTT-CAAGTG-GTAT-C--------T-C-ACTTTC-AAT-TGTCAGCCC--G--C-GGCTGAtgtttatcattttctctattgggttttcttatatcatagtttaaagtgttgatatcactgaacttcttcataagaaacctttttaattcagatttctaattttttcgtatttcattcccacaattcccagtaacgcacgcgcagttcaagataaacacacaataatatgtcagcccgcgggctgaca
gi|7 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcAAGAAATCGCTA--------TCATTTTCTC-TA-T-GGATTTTTTTTTTAAAAGAT-CATATT-TTA-GAGGGTTAATTA-G-TG-CT-ACTAAT-------------------TTTAGCTCAGATT-----TCTAGTTTGAAA
gi|13 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcAGAA-TCGCTA--------TCATTTTCTT-TA-T-GGAATTTctaattgagactgaatttatagtgtggactccccgtcgaggccttctagcgtgcgaatttgtagcttgatgacgacactctcatatatatagaatgactttatacctctttattacgaagtctattttgagaactgaggtttcccgtatgtttattgattactagcctggttccctgcccagttctaagcgttatcatttctctatgattttttctaggcttgatatcactgaacttcttcatttagaaaccgttttaattcagatttctatttttttttttttttgtatatcccttccacaatttcccattcaagcatgcgcaactgaaattagcccactaaattgtcagcccgcgggctgaca
gi|6 : tccacagattcatcccctctttttttcttctttattattctcgtattttgaaagtgttagtacaaaaaaaaaattataaaaataaaatgcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-T-GCTA--------TCATTTTGTC-T----GGATTTTTTTT---AAAGAT-CATATT-CTA-GAGGG----TTA-A-TA-CT-ACTAAA-------------------TTTAGCTCAGATT-----TCTAGTTGAAAAGCTACTAGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------CCGATC-G-AGGCCT----AGCG--TTGGC-----------GAAC---CAA---TT----G-AAC-G-C----GAC-C--------T-CTATATA---ATAGAA-TGATA----C-------CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--TCC----AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTCT------ATTGGG--TTTT-C-TAT-ATCATGGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TTATA-AGAAACCTTTT---T-TAA------T-TCAGATTTTTA-------AT--TTTTT--TCG-T-ATAT-TAA-AAC----C-C------ACAA-TATCCAGC-GGA-G--CAC-----GCGCAGTT-CGA--G--TGCTA--------T-C-TCAATTCAATTTGTCAGCCC--
gi|2 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacA-TCGCTAAA------TCATTTTCTC-TA-T-GGATTTTTTTA---AAAGAT-CATATT-CTA-GAGGG----T-A-G-TA-CT-ACTAAA-------------------TTTAGNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC----CCCG-TC-G-AGGCCT-C-TAG-G--T--GT-----------G------AAG---TT----G-A-C-G-C----GAC-C--------T-CTA--TA----TAAGAATGATAC---C-------TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--TCC----AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTCT------ATTGGG--TTTT-CTTAT-ATCATAGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTCTT-TCATA-AGAAA-CCTTT---T-T-A------T-TCAGATTTTTA-------A---TTTTTG-TCG-TAAT-TATTG-TCC----C-C------ACAA-TACCCAGC-GGA-G--CAC-----GCGCA-TT-CGA--A-GTGCTA--------T-C-TCAATTCAATTTGTCAG-CC--G--CGGGATGAC
gi|8 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacTA--------TCATTTTCTC-TATT-GGGTTTTCTT------ATAT-CATAGT-TTA-AAGTG----TTG-A-TA-TC-ACTGAACTTCTTCATAAGAAACCTTTTTAATTCAGATT-----TCTAATTT
gi|7 : ggacctgtccggaagcggccttgctaaactgcgacgccgcgtcggcgcctctagcgagtgcgtagtcttgcgaccgcactggacctctaatatatagccatgaattaaacctcttctatgaccgcgagtcttatttcttgagaaaaaatagttatgtgatacatgtacctcattcccaagaatcgttatcaatttctttattgttCCCG-TC-G-AGGCCTTC-TAGCG--T--GC-----------GAATTTGTAGC--TT----G-A-T-GAC----GACAC--------T-CTC-ATATATATAGAA-TGA------CTTTATACCTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCCCAGTTCTA-AGCGTT---AT-CA--TTT-CTC-------T-AT-GATTTT--------------------TT-CT----------------A--GGCTTGAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAA-CCGTT---T-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--TTG-T-AT-A-TCC-CTT----C-C------ACAATTTCCCATT-CAA-G--CAT-----GCGCAACT-GAA--A-TTAG-C--------C-C-AC--TA-AAT-TGTCAGCCC--G--CGGGCTGACAtttcgtatttcattcccacaattcccagtaacgcacgcgcagttcaagataaacacacaataatatgtcagcccgcgggctgaca
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcaagaaatcgctatcattttctctatggattttttttttaaaagatcatattttagagggttaattagtgctactaattttagctcagatttctagtttgaaactaattgagactgaatttatagtgtggactcCG-TC-G-GCGCCT-C-TAGCGAGT--GC-----------G------TAG---TCTTGCG-A-CCG-CACTGGAC-C--------T-CTA-ATAT--ATAGCCATGAATTAAAC-------CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--CCC----AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTCT------ATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCATA-AGAAA-CCTTT---T-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC----C-C------ACAA-TTCCCAGT-AAC-G--CAC-----GCGCAGTT-CAA--G-ATAA-A--------CAC-ACAA-T-AATATGTCAGCCC--G--CGGGCTGACA
gi|16 : ggacctgtccggaagcggccttgctaaactgcgacgccg-------CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGCTC----AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--TTC----AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTATTGGG---TTT-CTTAT-A-CATAGTTTAAA--GTGTTGATAAT-CA---CTGAA--CTTC---TCATA-AGAAA-Cc
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--TCC----A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------ATTGGT--TTAT-CTTATGATCAT--TTTAAACAGTGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCATA-AGAAA-CGTGT---T-TAA------T-TCCGATGTCTA-------A----TTTT--TAG-T-A----TCA-TGC----CGC------ACAA---CACAGTAAAC-G--CAC-----GCGCAGTT-CAA--G-ATAA-A--------G-C-ACTA-T-AATATGTCAGCCC--G--CGGGCTGACAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
gi|13 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAG----A-ATCGCT---AT-CA--TTTTCTTTAT
gi|14 : tccacagattcatcccctctttttttcttctttattattctcgtattttgaaagtgttagtacaaaaaaaaaattataaaaataaaatgcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AGAAA-CCTTT---T-TAA------T-TCAGATTTTTA-------AT--TTTTT--TCG-T-ATAT-TAA-TTC----C-C------ACAA-TACCCAGC-GGA-G--CAT-----GCGCAGTT-CAA--G-AGAT-A--------T-C-CCACTTCAATATGTCAGCCC--G--CGGGCTGAggaattt
gi|9 : A-CTTTTGTCT-TTG------T-TC----TCCTA-------A---TTTTTCTTCG-T-AT-T--CA-TTC----C-CGGCCTCACAA-TTCCCAGT-AACCG--CGACCCTCGCGCAGTTTCAA--G-ATAA-AACGTTGAAC-C-ATA-TC-AATATGTCAGCCC--G--CGGGCTGACAA
gi|18 : ctttatgacgggagtctatttttgagaaaatgtgtacctcaatttcaagaatcgttatcattttctctattgtttatattttctccccccttattgggtttcttatacatagtttaaagtgttgataatcactgaacttctcataagaaacgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttCAGT-AAC-G--CAC-----GCGCAGTT-CAA--GTATAA-ATGCA----C-T-ACAATT-----TGTCAGCCC--G--CGGACTGACAA
gi|19 : AA--G-ATAA-A--------C-CCACAAT--AATATGTCAGCCCGAG--CGGGCTGACAAAT
gi|19 : ATTTGTCAGCCC--GCTCGGGCTGACATATg
gi|3 : aagataaacccacaataTGTCAGCCC--G--CGGGCTGACATATg
gi|8 : agaagtttttaaatctactgtggaatcagagacatatagtatttatgtctctgatgtggaagtctcacgtagcacagattcatcccctcttggtcttttctcttaactcgtaattgtgaaagtgttagtaccaaaaaaatgcagttctgtaacgacagccgttgccatctaataatagagtgtaccgcgttttattgatttcctaagaatcgctaagcgctattcattttctttattggattttttttaaaagattcatattctacgagggttaagtactactaaatttagctcagatttctagtttgaaaacagctgacctagcttgatctaatacagtgtggactgttccgggaaggggcccttgctactcccgtcgaggcctcctcgcgtgcgtaagctttgacgcgaccttctatataataggaatgactctcttatgacggagtctattttgagaaatgtttattggattacatgtacctcattacccaaagaatcgttctcattttatctatgtttatacattttctcttatgggttttccttatatcatagttaaagtgttgatatcactgaacttctatcataagaaaccttttgtaatgtcagatttctaattttttcgtatttcacttcaccaccgcagatcccaatcaacggcccgcagttcaagataaacccacaataTGTCAGCCC--G--CGGGCTGACATAT
gi|5 : ggacctgtccggaagcggccttgctaaactgcgacgccgcgtcggcgcctctagcgagtgcgtagtcttgcgaccgcactggacctctaatatatagccatgaattaaacctcttctatgaccgcgagtcttatttcttgagaaaaaatagttatgtgatacatgtacctcattcccaagaatcgttatcaatttctttattgtttatcattttctctattgggttttcttatatcatagtttaaagtgttgatatcactgaacttcttcataagaaacctttttaattcagatttctaattttttcgtatttcattcccacaattcccagtaacgcacgcgcagttcaagataaacacacaataTGTCAGCCC--G--CGGGCTGACATAT
gi|7 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataTGTCAGCCC--G--CGGGCTGACAAaa
gi|9 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcaagaaatcgctatcattttctctatggattttttttttaaaagatcatattttagagggttaattagtgctactaattttagctcagatttctagtttgaaactaattgagactgaatttatagtgtggactccccgtcgaggccttctagcgtgcgaatttgtagcttgatgacgacactctcatatatatagaatgactttatacctctttattacgaagtctattttgagaactgaggtttcccgtatgtttattgattactagcctggttccctgcccagttctaagcgttatcatttctctatgattttttctaggcttgatatcactgaacttcttcatttagaaaccgttttaattcagatttctatttttttttttttttgtatatcccttccacaatttcccattcaagcatgcgcaactgaaattagcccactaaaTGTCAGCCC--G--CGGGCTGACATAT
gi|18 : ctttatgacgggagtctatttttgagaaaatgtgtacctcaatttcaagaatcgttatcattttctctattgtttatattttctccccccttattgggtttcttatacatagtttaaagtgttgataatcactgaacttctcataagaaacgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaTGTCAGTCC--G--CGGGCTGACAAATaa
gi|14 : cagtaacgcacgcgcagttcaagtataaatgcactacaTCAGCCC--G--CGGGCTGACATATa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTAAAAAATTCCGACGAAAATATTTACCAACAATCCAGTCGAAAGGTGCAAAGTGTTTATTCTTTACTGCTTAAACCACAGGGTAAATGTGAAAGCCCTAAAGGAAAACGGCCAAGGATTTGCCGAACAGATTTAATGCTAAAAAAATGTACCCGATTTATAAAAGACAAGTTTTTTAACCGTATGTGGATAGTTCAGTTACACAGACTTTTTTTCAACTCCCTTTGTTTCTTAAAAACTCGTCACTTTGAACCAATGTGTTACGTACAAAAAAAAAG
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|17 ): CTCAGTACACAAATTCATCCCCTCTTTTTTCTTCTTAACTCATATTTTGAAGGAGTTAGTACAAAAAAAATCAACAATAAAATGCAGTCC
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1111 11 22222 3333333 2222222 11 11 1111 1 111 33333333 222 1 111111 11111 1111 000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 5555555555555555555555555555555555 1111 22222222 111 111 44444444444444 22222222222222222222 1111111111111 1 1111111 111111 11 111 111111 22222222222 1 111111 11111111 2222222222222 1111
lowQualScore : 1 1 6 9 0 3333 5 33 2 22222 7777777 6 3333333 00 11 1 5 1 88 4444 3 5 666 1 1 33333 333 1 333 22 1 4444 333 1 1 1 5 00000000 77 55 0 66 111 1 5 5 5 777777 5 5 44444 5555 22 888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 5 5 5 5 5 77777 3333333333333333333333333333333333 5 5 5 0000 5 33333333 000 333 5 5 33333333333333 5 4 4 55555555555555555555 4 55 8 777 8888888888888 0 55 4 4 4 0 8888 8888 4 4 2 777 6666666 4 8888 4 777 4 666 8 4 4 222222 66 4 4 0 4 22 4 4 777 66 000 4 4 4 222222 4 11111111111 99 4 4 2 4 4 4 4 111111 8888 777 55555555 0 3 44 3 5555555555555 3 4444 5 44 1
lowQualScore : . . . . . .... . .. . ..... ....... . ....... .. .. . . . .. .... . . ... . . ..... ... . ... .. . .... ... . . . . ........ .. .. . .. ... . . . . ...... . . ..... .... .. ................................................................................. . . . . . . . ..... .................................. . . . .... . ........ ... ... . . .............. . . . .................... . .. . ... ............. . .. . . . . .... .... . . . ... ....... . .... . ... . ... . . . ...... .. . . . . .. . . ... .. ... . . . ...... . ........... .. . . . . . . . ...... .... ... ........ . . .. . ............. . .... . .. .
lowQualScore : 3 7 7 5 8 0000 8 88 2 66666 5555555 7 5555555 33 88 0 7 6 77 3333 3 8 000 0 0 00000 000 0 000 00 0 0000 000 0 0 0 0 00000000 22 11 4 99 444 4 7 7 7 333333 7 7 33333 7777 66 666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 0 0 0 0 0 88888 1111111111111111111111111111111111 0 0 0 6666 0 11111111 555 888 7 0 99999999999999 0 0 0 88888888888888888888 0 55 0 000 9999999999999 7 55 0 0 0 9 5555 5555 0 0 0 000 0000000 0 5555 0 000 0 666 3 0 0 888888 11 4 4 8 6 22 4 4 888 11 888 4 4 4 888888 4 66666666666 55 0 0 0 0 0 0 0 555555 5555 222 00000000 5 6 66 3 5555555555555 3 2222 5 66 0
consensus : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGAAGTCTCA-GTA-CACAGATTCATCCCCTCTT-GTTT--TTTC-TCTTAA-----C-TCGTAATTTTGAAA-GTGTTA-GTACN---AAAAAAATGCAGATCTGNACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTA-TGGATTTT--TTTT---AAAGA-TCATA-TTCTA-GAGGGTT-A----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTGA--TC--TANTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------GAA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
Reference ( family-7566 ) : GAAGTTTTTAAATCTA-TGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGAAGTCTCACGTAGCACAGATTCATCCCCTCTTGGTCT--TTTC-TCTTAA-----C-TCGTAATTGCGNAA-GTGTTA-GTACC---AAAAAAGTGCAGATCTNNGCGNCNACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTA-TGGATTTT--TTTT---AAAGA-TCATA-TTCTA-GAGGGTT-A----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGNTANCAGCT-----GNCCT--AG-CTTGA--TC--TAATACAGT-GTG--GAC-TGTTCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------GNA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACANAT
gi|1 : AGGTTTTTAA-TC-A-TGTAGAATCAGAGACATA-AGTTATATTATGTCTCTGAAGTGTGGAAGTCT-A-GTA-CACAGATTCATCCCCTCTT----T--TTTT-TCTTAA-------TCGTATTTTTGAAA-GTGTTATACACA---AAAAAAATGCAGATTT
gi|1 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaAAGAA-TCGCTA--------TCATTTTCTTCTA-TGGATTTT--TTTTT--AGGGA-TCATA-TTCTT-G-GGGTT-A----GATA------TCAATTTAGCTCAGATT-----TCTAGTTTGAAAGGNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----TACC-CTCC-CG-TCTGCAGGCA-T-CTA-GTG-----GCAGACAAATTTGGAA---G-----TT----GG---A-C-G-C----GAT-CGCCGAGACTCTA-TCT---ATAGAA-TG-------A------A-TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--T----CC-AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTC------TATTGAGGTTTTT-CTTAT-ATCATAG--TAAAGCGTGTTGAT-GT-CA---CTGAA--CTTC---TCA-TAAGAACCT-TTTT-TAAATTCCCT-TTAGATT--TA-------AATTTTTTT--TCGTT-ATAT-AAA-TTC-C-C------AC----AA--ACCCAG------CGGATGCACGCGC-GTT-CAAGTG-GTAT-C--------T-C-ACTTTC-AAT-TGTCAGCCC--GC-GGCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|10 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcGAAGTTTTT-AATCCA-TGTGAA--CAGAGA
gi|12 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaGAAGTTTTTAAATCTA-TGTGGAA-CAGAGA-GCATAGT-AG-TT---------A--TATGGAAGTCTCA-GTA-CACGATTTCATCCCCTCTT-GTTTGGTTCC-TCTTAA-----CTTCGTATTTTTGAAA-GGGTTA-GTACC---CAAAAAATGCAG-TCTGTACGCCAAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|13 : tgcacgaatgaagaaaCACAGATTCATCCCCTCTT--TTT--TTCT-TCTTTATTATTC-TCGT-ATTTTGAAA-GTGTTA-GTACA---AAAAAAgcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|13 : tcAGAA-TCGCTA--------TCATTTTCT-TTA-TGGAATTT--aaattataaaaataaaatgcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatcgctatcattttctttatggaattt
gi|14 : tccacagattcatcccctctttttttcttctttattattctcgtattttgaaagtgttagtacaaaaaaaaaattataaaaataaaatgcagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAAACC-TTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--TCG-T-ATAT-TAA-TTC-C-C------AC----AA-TACCCAG------C-GGAGCATGCGCAGTT-CAA--G-AGAT-A--------T-C-CCACTTCAATATGTCAGCCC--GCGGGCTGA
gi|16 : -CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGC----TC-AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|17 : CTCA-GTA-CACAAATTCATCCCCTCTT----T--TTTCTTCTTAA-----C-TCAT-ATTTTGAAG-GAGTTA-GTACA---AAAAAAATc
gi|18 : CAG------T-AACGCACGCGCAGTT-CAA--GTATAA-ATGCA----C-T-ACAATT-----TGTCAGCCC--GCGGACTGACAcaacaataaaatgcagtcc
gi|19 : AA--G-ATAA-A--------C-CCACAAT--AATATGTCAGCCCGAGCGGGCTGACAAATa
gi|2 : TTTTTA--TCTA-TGTGGAA-CAGAGACATATg
gi|2 : agaagttttttA-TCGCTAAA------TCATTTTCT-CTA-TGGATTTT--TTTA---AAAGA-TCATA-TTCTA-GAGGGT--A----G-TA-CT-ACTAAATTTAGNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----T----C-CC-CG-TC-G-AGGCC-T-CTA-G-G--T--GT-----------GAA---G-----TT----G----A-C-G-C----GAC-C--------TCTA--TA----TAAGAATG-------ATAC---C-TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--T----CC-AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTCTT-TCA-TAAGAAACC-TTTT-T-A------T-TCAGATTTTTA-------A---TTTTTG-TCG-TAAT-TATTG-TCC-C-C------AC----AA-TACCCAG------C-GGAGCACGCGCA-TT-CGA--A-GTGCTA--------T-C-TCAATTCAATTTGTCAG-CC--GCGGGATGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|3 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacGAAGTTTTTAAATCTACTGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGAAGTCTCACGTAGCACAGATTCATCCCCTCTTGGTCT--TTTC-TCTTAA-----C-TCGTAATTGTGAAA-GTGTTA-GTACC---AAAAAAATGCAGTTCT--GTAACGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTAAGAA-TCGCTAAGCGCTATTCATTTTCT-TTATTGGATTTT--TTTTA--AAAGATTCATA-TTCTACGAGGGTTAA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAA----AACAGCT-----GACCT--AG-CTTGA--TC--TAATACAGT-GTG--GAC-TGTTCCGGGAAGGG--GCCCTTGCT----A----CTCC-CG-TC-G-AGGCC-TCCTC-GCG--T--GC-----------GTA---AGCT--TT----G----A-C-G-C----GAC-CT-------TCTATATA---ATAGGAATG-------A------CTCTC-T-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-C----CCAAAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTC------TTATGGG--TTTTCCTTAT-ATCATAG-TTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-TATCA-TAAGAAACC-TTTTGTAA------TGTCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCACTTCAC-C------ACCGCAGA-TCCCAAT------C-AACG-GCCCGCAGTT-CAA--G-ATAA-AC-------C-C-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|4 : aGAAGTTTTTAA-TCTA-TGTGGAA-CAGAGACATATNNN-NN-NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN-NNNNNN-----N-NNNNNNNNNCCAAA----------------AAAAAAATGCAG--TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAA-TCGCTA--------TCATTTTCT-TTA-TGGATTTTTTTTTT---AAAGA-TCATA-TTCTA-GAGGGTT-A----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------GTA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------AATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACT-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCAAACGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|5 : GAAACGTGTTA--TACCCAAAAAAAAGTGCAGATCTGGACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTTAGAA-TCGCTAG-------TCGATGTCT--TA--GGA--TT--TTTA---AAAGATTCATATTTCTA-GAGGGGT-A------TAGCTAACAAAA--TAGCTT---TTTTCGATCTAG-TTGAAAGCGACTAGCTTGTGAGAATTTGAGACTTAAAGTCCTTATTAC-GTGGTGATGAC-TGTCC----AAGGGCCTCCCTAGCT----A----C-CC-CGTTC-G-AGG-C-T-CTAGGCGTTT--GC-----------GAA---AAATTTTC----GAAGTA-C-G-C----GAC-A--------TCT--ATA---GTA
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--T----CC-A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------ATTGGT--TTAT-CTTATGATCAT--TTTAAACAGTGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCA-TAAGAAACG-TGTT-TAA------T-TCCGATGTCTA-------A----TTTT--TAG-T-A----TCA-TGC-CGC------AC----AA---CACAG------TAAACGCACGCGCAGTT-CAA--G-ATAA-A--------G-C-ACTA-T-AATATGTCAGCCC--GCGGGCTGACAActacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|6 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAA-T-GCTA--------TCATTTTGT-CT---GGATTTT--TTTT---AAAGA-TCATA-TTCTA-GAGGGTT-A----A-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTGAAAAGCTACTAGCT-----G--------------------TNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NNCC-GA-TC-G-AGGCC-T---A-GCG--TTGGC-----------GAACCAA-----TT----G----AAC-G-C----GAC-C--------TCTATATA---ATAGAA-TG-------ATA----C-CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--T----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-C-TAT-ATCATGGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TTA-TAAGAAACCTTTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--TCG-T-ATAT-TAA-AAC-C-C------AC----AA-TATCCAG------C-GGAGCACGCGCAGTT-CGA--G--TGCTA--------T-C-TCAATTCAATTTGTCAGCCC--
gi|7 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacAAGAAATCGCTA--------TCATTTTCT-CTA-TGGATTTT--TTTTTTAAAAGA-TCATA-TTTTA-GAGGGTT-AATTAG-TG-CT-ACTAATTTTAGCTCAGATT-----TCTAGTTTGAA----ACTAATT-----G------AG-ACTGA--AT--T--TATAGT-GTG--GAC-T----------------------------------CCC-CG-TC-G-AGGCCTT-CTA-GCG--T--GC-----------GAATTTGTAGC-TT----G----A-T-GAC----GACAC--------TCTC-ATATATATAG-AATGACTTTATA------C-CTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCC-CAGTTCTA-AGCGTT---AT-CA---TTTCTCTA-TG--------ATTTTTTC------TA---GG--CTT----------------------------GAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAACC-GTTT-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--TTG-T-AT-A-TCC-CTT-C-C------AC----AATTTCCCAT------T-CAAGCATGCGCAACT-GAA--A-TTAG-C--------C-C-AC--TA-AAT-TGTCAGCCC--GCGGGCTGACA
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcG--GACCTGTCC--GGAAGCG--GCC-TTGCTAAACTGCGACGCCGCG-TC-G-GCGCC-T-CTA-GCGAGT--GC-----------GTA---G-----TCTTGCG----A-CCG-CACTGGAC-C--------TCTA-ATAT--ATAGCCATG-------AATTAAAC-CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--TCG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCACGCGCAGTT-CAA--G-ATAA-A--------CAC-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--T----TC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTATTGGG---TTT-CTTAT-A-CATAGTTTAAA--GTGTTGATAAT-CA---CTGAA--CTTC---TCA-TAAGAAAC
gi|9 : TCCTA-------A---TTTTTCTTCG-T-AT-T--CA-TTC-C-CGGCCTCAC----AA-TTCCCAGTAACCGC-GACCCTCGCGCAGTTTCAA--G-ATAA-AACGTTGAAC-C-ATA-TC-AATATGTCAGCCC--GCGGGCTGACAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTAAAAAATTCCGACGAAAATATTTACCAACAATCCAGTCGAAAGGTGCAAAGTGTTTATTCTTTACTGCTTAAACCACAGGGTAAATGTGAAAGCCCTAAAGGAAAACGGCCAAGGATTTGCCGAACAGATTTAATGCTAAAAAAATGTACCCGATTTATAAAAGACAAGTTTTTTAACCGTATGTGGATAGTTCAGTTACACAGACTTTTTTTCAACTCCCTTTGTTTCTTAAAAACTCGTCACTTTGAACCAATGTGTTACGTACAAAAAAAAAG
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11111111 111111 111 2222222 11111 11 3333333333333333 333333333 33333333 222 1 222222 11111 000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 55555555555555555555555555555555555 1111 22222222 111 111 44444444444444 22222222222222222222 1111111111111 1 1111111 1 333333333333333333333333333 11 111 111111 11111111111 1 111111 11111111 2222222222222 1111
lowQualScore : 1 1 6 1 3 3 5 0 0 11111111 8 0 0 6 6 5 666666 444 77 44 8888888 99 22222 00 9999 3333333333333333 777777777 1 4 2 33333 33333 333 22 1 4444 333 111 1 5 00000000 77 55 333 5 1 5 5 333333 5 5 44444 2 88 111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 5 5 5 5 5 77777 00000000000000000000000000000000000 5 5 5 0000 5 33333333 000 333 5 5 33333333333333 5 4 4 55555555555555555555 4 55 8 777 8888888888888 0 55 4 4 4 0 8888 8888 4 4 2 777 6666666 4 8888 4 777 4 999 0 6666 444444444444444444444444444 66 4 4 0 4 22 4 4 777 66 000 4 4 4 222222 4 77777777777 99 4 4 4 2 4 4 4 4 111111 8888 777 55555555 0 3 44 3 5555555555555 3 4444 5 44
lowQualScore : . . . . . . . . . ........ . . . . . . ...... ... .. .. ....... .. ..... .. .... ................ ......... . . . ..... ..... ... .. . .... ... ... . . ........ .. .. ... . . . . ...... . . ..... . .. ................................................................................. . . . . . . . ..... ................................... . . . .... . ........ ... ... . . .............. . . . .................... . .. . ... ............. . .. . . . . .... .... . . . ... ....... . .... . ... . ... . .... ........................... .. . . . . .. . . ... .. ... . . . ...... . ........... .. . . . . . . . . ...... .... ... ........ . . .. . ............. . .... . ..
lowQualScore : 3 7 7 0 3 8 6 0 0 11111111 0 2 2 7 7 7 444444 444 99 33 7777777 77 99999 22 8888 1111111111111111 555555555 0 4 6 55555 55555 000 00 0 0000 000 555 0 0 00000000 22 11 666 7 4 7 7 000000 7 7 33333 9 99 777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 0 0 0 0 0 88888 88888888888888888888888888888888888 0 0 0 6666 0 11111111 555 888 7 0 99999999999999 0 0 0 88888888888888888888 0 55 0 000 9999999999999 7 55 0 0 0 9 5555 5555 0 0 0 000 0000000 0 5555 0 000 0 000 7 9999 888888888888888888888888888 11 4 4 8 6 22 4 4 888 11 888 4 4 4 888888 4 66666666666 55 0 0 0 0 0 0 0 0 555555 5555 222 00000000 5 6 66 3 5555555555555 3 2222 5 66
consensus : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTACA---AAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTTTTTTT--AAA-GAT-CATATT-CTA-GAGGGTTA----G-TA-CTA-CTAAATTTAGCTCAGATTT-----CTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGTG-TG--GAC-TGTCCCGGGAAGGGGC--CCTTGCT----T----CTCC-CGT-C-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TA-------------------TTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
Reference ( family-7566 ) : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTTCTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTACN---AAAA----------------AAATGCAG--------ATCTGNACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTTTTTT---AAA-GAT-CATATT-CTA-GAGGGTTA----G-TA-CTA-CTAAATTTAGCTCAGATTT-----CTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTGA--TC--TANTACAGTG-TG--GAC-TGTCCCGGGAAGGGGC--CCTTGCT----T----CTCC-CGT-C-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TA-------------------TTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|1 : AGGTTTTTAA-TC-A-TGTAGAATCAGAGACATA-AGTTATATTATGTCTCTGAAGTGTGGA-AGTCT-A-GT-A-CACAGA------TTCATCCCCTC----TTT--TTTTTCTTAA-------TCGTATTTTTGAA--A--GTGTTATACACA---AAAA----------------AAATGCAG--------ATTT
gi|1 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaAAGAA-TCGCTA--------TCATTTTCTTCTAT-GGATTTTTTTTT--AGG-GAT-CATATT-CTT-G-GGGTTA----GATA------TCAATTTAGCTCAGATTT-----CTAGTTTGAAAGGNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNNN-NN--NNN-NNNNNNNNNNNNNNNN--NNNNNNN----TACC-CTCC-CGT-CTGCAGGCA-T-CTA-GTG-----GCAGACAAATTTGG-AA---G-----TT----GG---A-C-G-C----GAT-CGCCGAGACTCTA-TCT---ATAGAA-TG-------A------A-TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--T----CC-AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTC------TA-------------------TTGAGGTTTTT-CTTAT-ATCATAG--TAAAGCGTGTTGAT-GT-CA---CTGAA--CTTC---TCA-TAAGAACCT-TTTT-TAAATTCCCT-TTAGATT--TA-------AATTTTTTT--T-CGTT-ATAT-AAA-TTC-C-C------AC----AA--ACCCAG------CGGATGCACGCGC-GTT-CAAGTG-GTAT-C--------T-C-ACTTTC-AAT-TGTCAGCCC--GC-GGCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|10 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcGAAGTTTTT-AATCCA-TGT-GAA-CAGAGA
gi|11 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaA--TGTGGATAGT-TCA-GTTA-CACAGACTTTTTTTCAACTCCCTTTG-TTT-------CTTAAAAA--C-TCGTCACTTTGAACCAATGTGTTACGTACA---AAAA----------------AAAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|12 : ttaaaaaattccgacgaaaatatttaccaacaatccagtcgaaaggtgcaaagtgtttattctttactgcttaaaccacagggtaaatgtgaaagccctaaaggaaaacggccaaggatttgccgaacagatttaatgctaaaaaaatgtacccgatttataaaagacaagttttttaaccgtGAAGTTTTTAAATCTA-TGTGGAA-CAGAGA-GCATAGT-AG-TTATAT-----------GGA-AGTCTCA-GT-A-CACGAT------TTCATCCCCTCTTG-TTTGGTTCCTCTTAA-----CTTCGTATTTTTGAA--A--GGGTTA-GTACC---CAAA----------------AAATGCAG---------TCTGTACGCCAAag
gi|13 : tgcacgaatgaagaaa-CACAGA------TTCATCCCCTCTT--TTT--TTCTTCTTTATTATTC-TCGTA-TTTTGAA--A--GTGTTA-GTACA---AAAAAAAAATTATAAAAATAAAATGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA-TCGCTA--------TCATTTTCT-TTAT-GGAATTTgcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|14 : tcAGAAACC-TTTT-TAA------T-TCAGATTTTTA-------A---TTTTT--TTCG-T-ATAT-TAA-TTC-C-C------AC----AA-TACCCAG------C-GGAGCATGCGCAGTT-CAA--G-AGAT-A--------T-C-CCACTTCAATATGTCAGCCC--GCGGGCTGA
gi|16 : -CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGC----TC-AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|17 : CTCA-GT-A-CACAAA------TTCATCCCCTCT---TTT--TTCTTCTTAA-----C-TCAT-ATTTTGAA--G--GAGTTA-GTACA---AAAA----------------AAATc
gi|18 : CAG------T-AACGCACGCGCAGTT-CAA--GTATAA-ATGCA----C-T-ACAATT-----TGTCAGCCC--GCGGACTGACAAcaacaataaaatgcagtcc
gi|19 : AA--G-ATAA-A--------C-CCACAAT--AATATGTCAGCCCGAGCGGGCTGACAAAT
gi|2 : TTTTTA--TCTA-TGTGGAA-CAGAGACATATg
gi|2 : agaagttttttA-TCGCTAAA------TCATTTTCT-CTAT-GGATTTTTTTA---AAA-GAT-CATATT-CTA-GAGGGT-A----G-TA-CTA-CTAAATTTAGNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNNN-NN--NNN-NNNNNNNNNNNNNNNN--NNNNNNN----T----C-CC-CGT-C-G-AGGCC-T-CTA-G-G--T--GT-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA--TA----TAAGAATG-------ATAC---C-TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--T----CC-AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TA-------------------TTGGG--TTTT-CTTAT-ATCATAGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTCTT-TCA-TAAGAAACC-TTTT-T-A------T-TCAGATTTTTA-------A---TTTTTG-T-CG-TAAT-TATTG-TCC-C-C------AC----AA-TACCCAG------C-GGAGCACGCGCA-TT-CGA--A-GTGCTA--------T-C-TCAATTCAATTTGTCAG-CC--GCGGGATGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|3 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacGAAGTTTTTAAATCTACTGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCACGT-AGCACAGA------TTCATCCCCTCTTGGTCT--TTTCTCTTAA-----C-TCGTAATTGTGAA--A--GTGTTA-GTACC---AAAA----------------AAATGCAG--------TTCTGTAA--CGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTAAGAA-TCGCTAAGCGCTATTCATTTTCT-TTATTGGATTTTTTTT---AAAAGATTCATATT-CTACGAGGGTTAA---G-TA-CTA-CTAAATTTAGCTCAGATTT-----CTAGTTTGAAAAC----AGCT-----GACCT--AG-CTTGA--TC--TAATACAGTG-TG--GAC-TGTTCCGGGAAGGGGC--CCTTGCT----A----CTCC-CGT-C-G-AGGCC-TCCTC-GCG--T--GC-----------GTAA---GCT---TT----G----A-C-G-C----GAC-CT-------TCTATATA---ATAGGAATG-------A------CTCTC-T-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-C----CCAAAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTC------TT-------------------ATGGG--TTTTCCTTAT-ATCATAG-TTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-TATCA-TAAGAAACC-TTTTGTAA------TGTCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCACTTCAC-C------ACCGCAGA-TCCCAAT------C-AACG-GCCCGCAGTT-CAA--G-ATAA-AC-------C-C-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|4 : aGAAGTTTTTAA-TCTA-TGTGGAA-CAGAGACA-----T-AT-NNNNNNNNNNNN--NNNNNN-NNNNNNN-NN-N-NNNNNN------NNNNNNNNNNNNNN-NNN--NNNNNNNNNN-----N-NNNNNNNNNNNNN--N--NNNCCA-A---A---AAAA----------------AAATGCAG----------TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAA-TCGCTA--------TCATTTTCT-TTAT-GGATTTTTTTTTT-AAA-GAT-CATATT-CTA-GAGGGTTA----G-TA-CTA-CTAAATTTAGCTCAGATTT-----CTAGTTTGAAAGNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNNN-NN--NNN-NNNNNNNNNNNNNNNN--NNNNNNN----N----NTCC-CGT-C-G-AGGCC-T-CTA-GCG--T--GC-----------G-TA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT------------------------CATTTTCTC------TATTGTTTATCATTTTCTCAATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACT-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCAAACGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|5 : GAA--AC-GTGTTA--TACCCAAAAAA----------------AAGTGCAG--------ATCTGGACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTTAGAA-TCGCTAG-------TCGATGTCT--TA--GGATTTTTA-----AAA-GATTCATATTTCTA-GAGGGGTA------TAGCTAACAAAAT--AGCTT---TTTTCGATCTAGTT-GAAAGCGACTAGCTTGTGAGAATTTGAGACTTAAAGTCCTTATTAC-GTGGTGATGAC-TGTCC----AAGGGCCTCCCTAGCT----A----C-CC-CGTTC-G-AGG-C-T-CTAGGCGTTT--GC-----------G-AA---AAATTTTC----GAAGTA-C-G-C----GAC-A--------TCT--ATA---GTA
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--T----CC-A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------A-------------------TTGGT--TTAT-CTTATGATCAT--TTTAAACAGTGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCA-TAAGAAACG-TGTT-TAA------T-TCCGATGTCTA-------A----TTTT--T-AG-T-A----TCA-TGC-CGC------AC----AA---CACAG------TAAACGCACGCGCAGTT-CAA--G-ATAA-A--------G-C-ACTA-T-AATATGTCAGCCC--GCGGGCTGACAAActacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|6 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAA-T-GCTA--------TCATTTTGT-CT---GGATTTTTTTT---AAA-GAT-CATATT-CTA-GAGGGTTA----A-TA-CTA-CTAAATTTAGCTCAGATTT-----CTAGTTGAAAAGCTACTAGCT-----G--------------------TNNNNNNNNN-NN--NNN-NNNNNNNNNNNNNNNN--NNNNNNN----N----NNCC-GAT-C-G-AGGCC-T---A-GCG--TTGGC-----------G-AACCAA-----TT----G----AAC-G-C----GAC-C--------TCTATATA---ATAGAA-TG-------ATA----C-CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--T----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TA-------------------TTGGG--TTTT-C-TAT-ATCATGGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TTA-TAAGAAACCTTTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--T-CG-T-ATAT-TAA-AAC-C-C------AC----AA-TATCCAG------C-GGAGCACGCGCAGTT-CGA--G--TGCTA--------T-C-TCAATTCAATTTGTCAGCCC--
gi|7 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacAAGAAATCGCTA--------TCATTTTCT-CTAT-GGATTTTTTTTTTAAAA-GAT-CATATT-TTA-GAGGGTTAATTAG-TG-CTA-CTAATTTTAGCTCAGATTT-----CTAGTTTGAA----ACTAATT-----GAG-----A-CTGAA--T-----TTATAGTG-TG--GAC-T----------------------------------CCC-CGT-C-G-AGGCCTT-CTA-GCG--T--GC-----------G-AATTTGTAGC-TT----G----A-T-GAC----GACAC--------TCTC-ATATATATAG-AATGACTTTATA------C-CTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCC-CAGTTCTA-AGCGTT---AT-CA---TTTCTCTA-TG--------ATTTTTTC------TA----------------------GG--CTT----------------------------GAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAACC-GTTT-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--T-TG-T-AT-A-TCC-CTT-C-C------AC----AATTTCCCAT------T-CAAGCATGCGCAACT-GAA--A-TTAG-C--------C-C-AC--TA-AAT-TGTCAGCCC--GCGGGCTGACA
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcG--GACCTGTCC--GGAAGCGGC--C-TTGCTAAACTGCGACGCCGCGT-C-G-GCGCC-T-CTA-GCGAGT--GC-----------G-TA---G-----TCTTGCG----A-CCG-CACTGGAC-C--------TCTA-ATAT--ATAGCCATG-------AATTAAAC-CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTC------TA-------------------TTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCACGCGCAGTT-CAA--G-ATAA-A--------CAC-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--T----TC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTA-------------------TTGGG---TTT-CTTAT-A-CATAGTTTAAA--GTGTTGATAAT-CA---CTGAA--CTTC---TCA-TAAGAAAC
gi|9 : TCCTA-------A---TTTTTCTT-CG-T-AT-T--CA-TTC-C-CGGCCTCAC----AA-TTCCCAGTAACCGC-GACCCTCGCGCAGTTTCAA--G-ATAA-AACGTTGAAC-C-ATA-TC-AATATGTCAGCCC--GCGGGCTGACAAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC
Alignments
lowQualScore : 1 1 1 1 11111111 111111 111 1111111 11111 11 3333333333333333 333333333 33333333 222 222222 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 55555555555555555555555555555555555 1111 22222222 111 111 44444444444444 22222222222222222222 1111111111111 1 1111111 111111 11 111 111111 11111111111 1 111111 11111111 2222222222222 1111
lowQualScore : 1 1 6 1 3 66 0 0 11111111 8 0 0 6 6 5 666666 444 77 8888888 99 22222 00 888 3333333333333333 777777777 4 2 33333 33333 333 22 1 4444 333 111 1 5 00000000 77 55 0 5 000 5 5 5 5 333333 5 5 44444 88 999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 5 5 5 77777 00000000000000000000000000000000000 5 5 5 0000 5 33333333 000 333 5 5 33333333333333 5 4 4 55555555555555555555 4 55 8 777 8888888888888 0 55 4 4 4 0 8888 8888 4 4 2 777 6666666 4 8888 4 777 4 666 8 4 4 222222 66 4 4 0 4 22 4 4 777 66 000 4 4 4 222222 4 77777777777 99 4 4 4 2 4 4 4 4 111111 8888 777 55555555 0 3 44 3 5555555555555 3 4444 5 44
lowQualScore : . . . . . .. . . ........ . . . . . . ...... ... .. ....... .. ..... .. ... ................ ......... . . ..... ..... ... .. . .... ... ... . . ........ .. .. . . ... . . . . ...... . . ..... .. ................................................................................. . . . . . . . ..... ................................... . . . .... . ........ ... ... . . .............. . . . .................... . .. . ... ............. . .. . . . . .... .... . . . ... ....... . .... . ... . ... . . . ...... .. . . . . .. . . ... .. ... . . . ...... . ........... .. . . . . . . . . ...... .... ... ........ . . .. . ............. . .... . ..
lowQualScore : 3 7 7 0 3 44 0 0 11111111 0 2 2 7 7 7 444444 444 99 7777777 77 99999 22 888 1111111111111111 555555555 4 6 55555 55555 000 00 0 0000 000 555 0 0 00000000 22 11 4 0 333 7 7 7 7 000000 7 7 33333 99 111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 0 0 0 0 0 88888 88888888888888888888888888888888888 0 0 0 6666 0 11111111 555 888 7 0 99999999999999 0 0 0 88888888888888888888 0 55 0 000 9999999999999 7 55 0 0 0 9 5555 5555 0 0 0 000 0000000 0 5555 0 000 0 666 3 0 0 888888 11 4 4 8 6 22 4 4 888 11 888 4 4 4 888888 4 66666666666 55 0 0 0 0 0 0 0 0 555555 5555 222 00000000 5 6 66 3 5555555555555 3 2222 5 66
consensus : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
Reference ( family-7566 ) : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|1 : AGGTTTTTAA-TC-A-TGTAGAATCAGAGACATA-AGTTATATTATGTCTCTGAAGTGTGGA-AGTCT-A-GT-A-CACAGA------TTCATCCCCTC----TTT--TTTTTCTTAA-------TCGTATTTTTGAA--A--GTGTTATACAC---AAAAA----------------AAATGCAG--------ATTT
gi|1 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaAAGAA-TCGCTA--------TCATTTTCTTCTAT-GGATTTT-TTTTT--AGGGA-T-CATA-TTCTT-G-GGGTTA----GATA------TCAATTTAGCTCAGATT-----TCTAGTTTGAAAGGNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----TACC-CTCC-CG-TCTGCAGGCA-T-CTA-GTG-----GCAGACAAATTTGG-AA---G-----TT----GG---A-C-G-C----GAT-CGCCGAGACTCTA-TCT---ATAGAA-TG-------A------A-TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--T----CC-AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTC------TATTGAGGTTTTT-CTTAT-ATCATAG--TAAAGCGTGTTGAT-GT-CA---CTGAA--CTTC---TCA-TAAGAACCT-TTTT-TAAATTCCCT-TTAGATT--TA-------AATTTTTTT--T-CGTT-ATAT-AAA-TTC-C-C------AC----AA--ACCCAG------CGGATGCACGCGC-GTT-CAAGTG-GTAT-C--------T-C-ACTTTC-AAT-TGTCAGCCC--GC-GGCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|10 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcGAAGTTTTT-AATCCA-TGT-GAA-CAGAGA
gi|11 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaA--TGTGGATAGT-TCA-GTTA-CACAGACTTTTTTTCAACTCCCTTTG-TTT----CTTAAAAA-----C-TCGTCACTTTGAACCAATGTGTTACGTAC---AAAAA----------------AAAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|12 : ttaaaaaattccgacgaaaatatttaccaacaatccagtcgaaaggtgcaaagtgtttattctttactgcttaaaccacagggtaaatgtgaaagccctaaaggaaaacggccaaggatttgccgaacagatttaatgctaaaaaaatgtacccgatttataaaagacaagttttttaaccgtGAAGTTTTTAAATCTA-TGTGGAA-CAGAGA-GCATAGT-AG-TTATAT-----------GGA-AGTCTCA-GT-A-CACGAT------TTCATCCCCTCTTG-TTTGGTTCCTCTTAA-----CTTCGTATTTTTGAA--A--GGGTTA-GTAC---CCAAA----------------AAATGCAG---------TCTGTACGCCAAag
gi|13 : tgcacgaatgaagaaa-CACAGA------TTCATCCCCTCTT--TTT--TTCTTCTTTATTATTC-TCGTA-TTTTGAA--A--GTGTTA-GTAC---AAAAAAAAAATTATAAAAATAAAATGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA-TCGCTA--------TCATTTTCT-TTAT-GGAATTT-gcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|14 : tcAGAAACC-TTTT-TAA------T-TCAGATTTTTA-------A---TTTTT--TTCG-T-ATAT-TAA-TTC-C-C------AC----AA-TACCCAG------C-GGAGCATGCGCAGTT-CAA--G-AGAT-A--------T-C-CCACTTCAATATGTCAGCCC--GCGGGCTGA
gi|16 : -CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGC----TC-AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|17 : CTCA-GT-A-CACAAA------TTCATCCCCTCT---TTT--TTCTTCTTAA-----C-TCAT-ATTTTGAA--G--GAGTTA-GTAC---AAAAA----------------AAATc
gi|18 : CAG------T-AACGCACGCGCAGTT-CAA--GTATAA-ATGCA----C-T-ACAATT-----TGTCAGCCC--GCGGACTGACAAcaacaataaaatgcagtcc
gi|19 : AA--G-ATAA-A--------C-CCACAAT--AATATGTCAGCCCGAGCGGGCTGACAAAT
gi|2 : TTTTTA--TCTA-TGTGGAA-CAGAGACATATg
gi|2 : agaagttttttA-TCGCTAAA------TCATTTTCT-CTAT-GGATTTT-TTTA---AAAGA-T-CATA-TTCTA-GAGGGT-A----G-TA-CT-ACTAAATTTAGNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----T----C-CC-CG-TC-G-AGGCC-T-CTA-G-G--T--GT-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA--TA----TAAGAATG-------ATAC---C-TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--T----CC-AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTCTT-TCA-TAAGAAACC-TTTT-T-A------T-TCAGATTTTTA-------A---TTTTTG-T-CG-TAAT-TATTG-TCC-C-C------AC----AA-TACCCAG------C-GGAGCACGCGCA-TT-CGA--A-GTGCTA--------T-C-TCAATTCAATTTGTCAG-CC--GCGGGATGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|3 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacGAAGTTTTTAAATCTACTGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCACGT-AGCACAGA------TTCATCCCCTCTTGGTCT--TTTCTCTTAA-----C-TCGTAATTGTGAA--A--GTGTTA-GTAC---CAAAA----------------AAATGCAG--------TTCTGTAA--CGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTAAGAA-TCGCTAAGCGCTATTCATTTTCT-TTATTGGATTTT-TTTTA--AAAGA-TTCATA-TTCTACGAGGGTTAA---G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAAC----AGCT-----GACCT--AG-CTTGA--TC--TAATACAGT-GTG--GAC-TGTTCCGGGAAGGG--GCCCTTGCT----A----CTCC-CG-TC-G-AGGCC-TCCTC-GCG--T--GC-----------GTAA---GCT---TT----G----A-C-G-C----GAC-CT-------TCTATATA---ATAGGAATG-------A------CTCTC-T-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-C----CCAAAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTC------TTATGGG--TTTTCCTTAT-ATCATAG-TTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-TATCA-TAAGAAACC-TTTTGTAA------TGTCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCACTTCAC-C------ACCGCAGA-TCCCAAT------C-AACG-GCCCGCAGTT-CAA--G-ATAA-AC-------C-C-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|4 : aGAAGTTTTTAA-TCTA-TGTGGAA-CAGAGACAT------AT-NNNNNNNNNNNN--NNNNNN-NNNNNNN-NN-N-NNNNNN------NNNNNNNNNNNNNN-NNN--NNNNNNNNNN-----N-NNNNNNNNNNNNN--N--NNNCCA-A------AAAAA----------------AAATGCAG----------TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAA-TCGCTA--------TCATTTTCT-TTAT-GGATTTTTTTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-TA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------AATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACT-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCAAACGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|5 : GAA--AC-GTGTTA--TACCCAAAAAA----------------AAGTGCAG--------ATCTGGACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTTAGAA-TCGCTAG-------TCGATGTCT--TA--GGA---T-TTTTA--AAAGATT-CATATTTCTA-GAGGGGTA------TAGCTAACAAAA--TAGCTT---TTTTCGATCTAG-TTGAAAGCGACTAGCTTGTGAGAATTTGAGACTTAAAGTCCTTATTAC-GTGGTGATGAC-TGTCC----AAGGGCCTCCCTAGCT----A----C-CC-CGTTC-G-AGG-C-T-CTAGGCGTTT--GC-----------G-AA---AAATTTTC----GAAGTA-C-G-C----GAC-A--------TCT--ATA---GTA
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--T----CC-A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------ATTGGT--TTAT-CTTATGATCAT--TTTAAACAGTGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCA-TAAGAAACG-TGTT-TAA------T-TCCGATGTCTA-------A----TTTT--T-AG-T-A----TCA-TGC-CGC------AC----AA---CACAG------TAAACGCACGCGCAGTT-CAA--G-ATAA-A--------G-C-ACTA-T-AATATGTCAGCCC--GCGGGCTGACAAActacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|6 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAA-T-GCTA--------TCATTTTGT-CT---GGATTTT-TTTT---AAAGA-T-CATA-TTCTA-GAGGGTTA----A-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTGAAAAGCTACTAGCT-----G--------------------TNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NNCC-GA-TC-G-AGGCC-T---A-GCG--TTGGC-----------G-AACCAA-----TT----G----AAC-G-C----GAC-C--------TCTATATA---ATAGAA-TG-------ATA----C-CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--T----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-C-TAT-ATCATGGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TTA-TAAGAAACCTTTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--T-CG-T-ATAT-TAA-AAC-C-C------AC----AA-TATCCAG------C-GGAGCACGCGCAGTT-CGA--G--TGCTA--------T-C-TCAATTCAATTTGTCAGCCC--
gi|7 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacAAGAAATCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTTTAAAAGA-T-CATA-TTTTA-GAGGGTTAATTAG-TG-CT-ACTAATTTTAGCTCAGATT-----TCTAGTTTGAA----ACTAATT-----GAG-----A-CTGAA--T-----TTATAGT-GTG--GAC-T----------------------------------CCC-CG-TC-G-AGGCCTT-CTA-GCG--T--GC-----------G-AATTTGTAGC-TT----G----A-T-GAC----GACAC--------TCTC-ATATATATAG-AATGACTTTATA------C-CTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCC-CAGTTCTA-AGCGTT---AT-CA---TTTCTCTA-TG--------ATTTTTTC------TA---GG--CTT----------------------------GAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAACC-GTTT-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--T-TG-T-AT-A-TCC-CTT-C-C------AC----AATTTCCCAT------T-CAAGCATGCGCAACT-GAA--A-TTAG-C--------C-C-AC--TA-AAT-TGTCAGCCC--GCGGGCTGACA
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcG--GACCTGTCC--GGAAGCG--GCC-TTGCTAAACTGCGACGCCGCG-TC-G-GCGCC-T-CTA-GCGAGT--GC-----------G-TA---G-----TCTTGCG----A-CCG-CACTGGAC-C--------TCTA-ATAT--ATAGCCATG-------AATTAAAC-CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCACGCGCAGTT-CAA--G-ATAA-A--------CAC-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--T----TC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTATTGGG---TTT-CTTAT-A-CATAGTTTAAA--GTGTTGATAAT-CA---CTGAA--CTTC---TCA-TAAGAAAC
gi|9 : TCCTA-------A---TTTTTCTT-CG-T-AT-T--CA-TTC-C-CGGCCTCAC----AA-TTCCCAGTAACCGC-GACCCTCGCGCAGTTTCAA--G-ATAA-AACGTTGAAC-C-ATA-TC-AATATGTCAGCCC--GCGGGCTGACAAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC
Alignments
lowQualScore : 1 1 1 1 11111111 111111 111 1111111 11111 11 3333333333333333 333333333 33333333 222 222222 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 55555555555555555555555555555555555 1111 22222222 111 111 44444444444444 22222222222222222222 1111111111111 1 1111111 111111 11 111 111111 11111111111 1 111111 11111111 2222222222222 1111
lowQualScore : 1 1 6 1 3 66 0 0 11111111 8 0 0 6 6 5 666666 444 77 8888888 99 22222 00 888 3333333333333333 777777777 4 2 33333 33333 333 22 1 4444 333 111 1 5 00000000 77 55 0 5 000 5 5 5 5 333333 5 5 44444 88 999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 5 5 5 77777 00000000000000000000000000000000000 5 5 5 0000 5 33333333 000 333 5 5 33333333333333 5 4 4 55555555555555555555 4 55 8 777 8888888888888 0 55 4 4 4 0 8888 8888 4 4 2 777 6666666 4 8888 4 777 4 666 8 4 4 222222 66 4 4 0 4 22 4 4 777 66 000 4 4 4 222222 4 77777777777 99 4 4 4 2 4 4 4 4 111111 8888 777 55555555 0 3 44 3 5555555555555 3 4444 5 44
lowQualScore : . . . . . .. . . ........ . . . . . . ...... ... .. ....... .. ..... .. ... ................ ......... . . ..... ..... ... .. . .... ... ... . . ........ .. .. . . ... . . . . ...... . . ..... .. ................................................................................. . . . . . . . ..... ................................... . . . .... . ........ ... ... . . .............. . . . .................... . .. . ... ............. . .. . . . . .... .... . . . ... ....... . .... . ... . ... . . . ...... .. . . . . .. . . ... .. ... . . . ...... . ........... .. . . . . . . . . ...... .... ... ........ . . .. . ............. . .... . ..
lowQualScore : 3 7 7 0 3 44 0 0 11111111 0 2 2 7 7 7 444444 444 99 7777777 77 99999 22 888 1111111111111111 555555555 4 6 55555 55555 000 00 0 0000 000 555 0 0 00000000 22 11 4 0 333 7 7 7 7 000000 7 7 33333 99 111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 0 0 0 0 0 88888 88888888888888888888888888888888888 0 0 0 6666 0 11111111 555 888 7 0 99999999999999 0 0 0 88888888888888888888 0 55 0 000 9999999999999 7 55 0 0 0 9 5555 5555 0 0 0 000 0000000 0 5555 0 000 0 666 3 0 0 888888 11 4 4 8 6 22 4 4 888 11 888 4 4 4 888888 4 66666666666 55 0 0 0 0 0 0 0 0 555555 5555 222 00000000 5 6 66 3 5555555555555 3 2222 5 66
consensus : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
Reference ( family-7566 ) : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|1 : AGGTTTTTAA-TC-A-TGTAGAATCAGAGACATA-AGTTATATTATGTCTCTGAAGTGTGGA-AGTCT-A-GT-A-CACAGA------TTCATCCCCTC----TTT--TTTTTCTTAA-------TCGTATTTTTGAA--A--GTGTTATACAC---AAAAA----------------AAATGCAG--------ATTT
gi|1 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaAAGAA-TCGCTA--------TCATTTTCTTCTAT-GGATTTT-TTTTT--AGGGA-T-CATA-TTCTT-G-GGGTTA----GATA------TCAATTTAGCTCAGATT-----TCTAGTTTGAAAGGNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----TACC-CTCC-CG-TCTGCAGGCA-T-CTA-GTG-----GCAGACAAATTTGG-AA---G-----TT----GG---A-C-G-C----GAT-CGCCGAGACTCTA-TCT---ATAGAA-TG-------A------A-TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--T----CC-AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTC------TATTGAGGTTTTT-CTTAT-ATCATAG--TAAAGCGTGTTGAT-GT-CA---CTGAA--CTTC---TCA-TAAGAACCT-TTTT-TAAATTCCCT-TTAGATT--TA-------AATTTTTTT--T-CGTT-ATAT-AAA-TTC-C-C------AC----AA--ACCCAG------CGGATGCACGCGC-GTT-CAAGTG-GTAT-C--------T-C-ACTTTC-AAT-TGTCAGCCC--GC-GGCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|10 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcGAAGTTTTT-AATCCA-TGT-GAA-CAGAGA
gi|11 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaA--TGTGGATAGT-TCA-GTTA-CACAGACTTTTTTTCAACTCCCTTTG-TTT----CTTAAAAA-----C-TCGTCACTTTGAACCAATGTGTTACGTAC---AAAAA----------------AAAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|12 : ttaaaaaattccgacgaaaatatttaccaacaatccagtcgaaaggtgcaaagtgtttattctttactgcttaaaccacagggtaaatgtgaaagccctaaaggaaaacggccaaggatttgccgaacagatttaatgctaaaaaaatgtacccgatttataaaagacaagttttttaaccgtGAAGTTTTTAAATCTA-TGTGGAA-CAGAGA-GCATAGT-AG-TTATAT-----------GGA-AGTCTCA-GT-A-CACGAT------TTCATCCCCTCTTG-TTTGGTTCCTCTTAA-----CTTCGTATTTTTGAA--A--GGGTTA-GTAC---CCAAA----------------AAATGCAG---------TCTGTACGCCAAag
gi|13 : tgcacgaatgaagaaa-CACAGA------TTCATCCCCTCTT--TTT--TTCTTCTTTATTATTC-TCGTA-TTTTGAA--A--GTGTTA-GTAC---AAAAAAAAAATTATAAAAATAAAATGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA-TCGCTA--------TCATTTTCT-TTAT-GGAATTT-gcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|14 : tcAGAAACC-TTTT-TAA------T-TCAGATTTTTA-------A---TTTTT--TTCG-T-ATAT-TAA-TTC-C-C------AC----AA-TACCCAG------C-GGAGCATGCGCAGTT-CAA--G-AGAT-A--------T-C-CCACTTCAATATGTCAGCCC--GCGGGCTGA
gi|16 : -CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGC----TC-AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|17 : CTCA-GT-A-CACAAA------TTCATCCCCTCT---TTT--TTCTTCTTAA-----C-TCAT-ATTTTGAA--G--GAGTTA-GTAC---AAAAA----------------AAATc
gi|18 : CAG------T-AACGCACGCGCAGTT-CAA--GTATAA-ATGCA----C-T-ACAATT-----TGTCAGCCC--GCGGACTGACAAcaacaataaaatgcagtcc
gi|19 : AA--G-ATAA-A--------C-CCACAAT--AATATGTCAGCCCGAGCGGGCTGACAAAT
gi|2 : TTTTTA--TCTA-TGTGGAA-CAGAGACATATg
gi|2 : agaagttttttA-TCGCTAAA------TCATTTTCT-CTAT-GGATTTT-TTTA---AAAGA-T-CATA-TTCTA-GAGGGT-A----G-TA-CT-ACTAAATTTAGNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----T----C-CC-CG-TC-G-AGGCC-T-CTA-G-G--T--GT-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA--TA----TAAGAATG-------ATAC---C-TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--T----CC-AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTCTT-TCA-TAAGAAACC-TTTT-T-A------T-TCAGATTTTTA-------A---TTTTTG-T-CG-TAAT-TATTG-TCC-C-C------AC----AA-TACCCAG------C-GGAGCACGCGCA-TT-CGA--A-GTGCTA--------T-C-TCAATTCAATTTGTCAG-CC--GCGGGATGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|3 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacGAAGTTTTTAAATCTACTGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCACGT-AGCACAGA------TTCATCCCCTCTTGGTCT--TTTCTCTTAA-----C-TCGTAATTGTGAA--A--GTGTTA-GTAC---CAAAA----------------AAATGCAG--------TTCTGTAA--CGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTAAGAA-TCGCTAAGCGCTATTCATTTTCT-TTATTGGATTTT-TTTTA--AAAGA-TTCATA-TTCTACGAGGGTTAA---G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAAC----AGCT-----GACCT--AG-CTTGA--TC--TAATACAGT-GTG--GAC-TGTTCCGGGAAGGG--GCCCTTGCT----A----CTCC-CG-TC-G-AGGCC-TCCTC-GCG--T--GC-----------GTAA---GCT---TT----G----A-C-G-C----GAC-CT-------TCTATATA---ATAGGAATG-------A------CTCTC-T-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-C----CCAAAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTC------TTATGGG--TTTTCCTTAT-ATCATAG-TTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-TATCA-TAAGAAACC-TTTTGTAA------TGTCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCACTTCAC-C------ACCGCAGA-TCCCAAT------C-AACG-GCCCGCAGTT-CAA--G-ATAA-AC-------C-C-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|4 : aGAAGTTTTTAA-TCTA-TGTGGAA-CAGAGACAT------AT-NNNNNNNNNNNN--NNNNNN-NNNNNNN-NN-N-NNNNNN------NNNNNNNNNNNNNN-NNN--NNNNNNNNNN-----N-NNNNNNNNNNNNN--N--NNNCCA-A------AAAAA----------------AAATGCAG----------TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAA-TCGCTA--------TCATTTTCT-TTAT-GGATTTTTTTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-TA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------AATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACT-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCAAACGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
gi|5 : GAA--AC-GTGTTA--TACCCAAAAAA----------------AAGTGCAG--------ATCTGGACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTTAGAA-TCGCTAG-------TCGATGTCT--TA--GGA---T-TTTTA--AAAGATT-CATATTTCTA-GAGGGGTA------TAGCTAACAAAA--TAGCTT---TTTTCGATCTAG-TTGAAAGCGACTAGCTTGTGAGAATTTGAGACTTAAAGTCCTTATTAC-GTGGTGATGAC-TGTCC----AAGGGCCTCCCTAGCT----A----C-CC-CGTTC-G-AGG-C-T-CTAGGCGTTT--GC-----------G-AA---AAATTTTC----GAAGTA-C-G-C----GAC-A--------TCT--ATA---GTA
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--T----CC-A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------ATTGGT--TTAT-CTTATGATCAT--TTTAAACAGTGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCA-TAAGAAACG-TGTT-TAA------T-TCCGATGTCTA-------A----TTTT--T-AG-T-A----TCA-TGC-CGC------AC----AA---CACAG------TAAACGCACGCGCAGTT-CAA--G-ATAA-A--------G-C-ACTA-T-AATATGTCAGCCC--GCGGGCTGACAAActacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|6 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAA-T-GCTA--------TCATTTTGT-CT---GGATTTT-TTTT---AAAGA-T-CATA-TTCTA-GAGGGTTA----A-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTGAAAAGCTACTAGCT-----G--------------------TNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NNCC-GA-TC-G-AGGCC-T---A-GCG--TTGGC-----------G-AACCAA-----TT----G----AAC-G-C----GAC-C--------TCTATATA---ATAGAA-TG-------ATA----C-CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--T----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-C-TAT-ATCATGGTTTAGA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TTA-TAAGAAACCTTTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--T-CG-T-ATAT-TAA-AAC-C-C------AC----AA-TATCCAG------C-GGAGCACGCGCAGTT-CGA--G--TGCTA--------T-C-TCAATTCAATTTGTCAGCCC--
gi|7 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacAAGAAATCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTTTAAAAGA-T-CATA-TTTTA-GAGGGTTAATTAG-TG-CT-ACTAATTTTAGCTCAGATT-----TCTAGTTTGAA----ACTAATT-----GAG-----A-CTGAA--T-----TTATAGT-GTG--GAC-T----------------------------------CCC-CG-TC-G-AGGCCTT-CTA-GCG--T--GC-----------G-AATTTGTAGC-TT----G----A-T-GAC----GACAC--------TCTC-ATATATATAG-AATGACTTTATA------C-CTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCC-CAGTTCTA-AGCGTT---AT-CA---TTTCTCTA-TG--------ATTTTTTC------TA---GG--CTT----------------------------GAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAACC-GTTT-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--T-TG-T-AT-A-TCC-CTT-C-C------AC----AATTTCCCAT------T-CAAGCATGCGCAACT-GAA--A-TTAG-C--------C-C-AC--TA-AAT-TGTCAGCCC--GCGGGCTGACA
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcG--GACCTGTCC--GGAAGCG--GCC-TTGCTAAACTGCGACGCCGCG-TC-G-GCGCC-T-CTA-GCGAGT--GC-----------G-TA---G-----TCTTGCG----A-CCG-CACTGGAC-C--------TCTA-ATAT--ATAGCCATG-------AATTAAAC-CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------T-AACGCACGCGCAGTT-CAA--G-ATAA-A--------CAC-ACAA-T-AATATGTCAGCCC--GCGGGCTGACA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--T----TC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTATTGGG---TTT-CTTAT-A-CATAGTTTAAA--GTGTTGATAAT-CA---CTGAA--CTTC---TCA-TAAGAAAC
gi|9 : TCCTA-------A---TTTTTCTT-CG-T-AT-T--CA-TTC-C-CGGCCTCAC----AA-TTCCCAGTAACCGC-GACCCTCGCGCAGTTTCAA--G-ATAA-AACGTTGAAC-C-ATA-TC-AATATGTCAGCCC--GCGGGCTGACAAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
blockSeqs : A C C G T AT . . CTCTGA T C T G CTTTTT TGG GG TTATTC CA CCAAT CG CCA AAAAATTATAAAAATA TNNNNNNNN N N CAGCC TGCCA CTA TA T AGTG TTA TGA T A AGCGCTAT T TT T TTA T T T C ATTAG G A TTCGA NN TGTGAGAATTTGAGACTTAAAGTCCTTATTACGTGGTGATGACTGTCCAAGGGCCTCCCTAGCTAC G T . . T C G TTT GAAAAATTTTCGAAGT A C A ACTG A T ATA TAT G A ACTTTATA T C T GGGCCGACAG T CT A CTG GGTTTCCCGTA AC G G C AACA ACTC G A G CTT CCCTG A TTCT C . . GAT A . A CCCCCT . C G T CA A G AGG GA TT T T G . G TTTTTTTT CT T . A A A C A G GGCCTC CGCA TTT TAACCGC T . T AAACGTTGAAC C CTTC A GA
blockSeqs : A T . G . AT . . NNNNNN . . . . . TG . CT AT AC G . . T N G NNNNN NNNNN NNN NN N NNNN NNN NNN N . AA C T . A . . . . AG . . . NN GACCTAGCTTGATCTAATACAGTGTGGACTGTTCCGGGAAGGGGCCCTTGCTACT . . . . . . . TTG GAATTTGTAGCTTG . . . . . . ATA T G A AATTAAA . . . CGGCGACGG . . T . AAA . . . . . . . . T . AGC . . . . . T T . . . . . . T . . . . . TA . . . . . AT G . . . A . . . . . . TA TA . . . AATGCAC . ATTC A .
blockSeqs : A T . G . AT . . . . . . . . TG . C AA A G . . A G N AGCTG ACATC AAT AT G TTAC GAT GAT A . G T T . T . . . . G . . . CG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT . . . . . . . AGT GTAGTCTTGCG . . . . . . AA . A A ATAC . . . TATAGG . . . . A . . . . . . . . . . AC . . . . . T T . . . . . . T . . . . . T . . . . . A . . . . . . . . . . . TA C . . . CTAT . ATTC T .
blockSeqs : . T . G . . . . . . . NN . C NN A G . . . . C . . T T . A . . . . G . . . CT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC . . . . . . . T GTAAGCTTTG . . . . . . CA . A A ATA . . . CCGCG . . . . A . . . . . . . . . . T . . . . . T T . . . . . . T . . . . . T . . . . . A . . . . . . . . . . . TC T . . . AACC . ATT A .
blockSeqs : . T . . . . . . . T . C A G G . . . . . C T . . . . . . A . . . C GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . T GAACCAATTG . . . . . . AA . C A A . . . CGGG . . . . A . . . . . . . . . . C . . . . . T T . . . . . . T . . . . . T . . . . . A . . . . . . . . . . . TT C . . . CTAT . ATT A .
blockSeqs : . . . . N A A A . . . . C . . . . . . . . . . . . GAGACTGAATTTATAGTGTGGACTC . . . . . . . T GAAGTTG . . . . . . A . . . A . . . CGG . . . . A . . . . . . . . . . T . . . . . T T . . . . . . T . . . . . T . . . . . A . . . . . . . . . . . TA C . . . AACA . AT A .
blockSeqs : N . . . . . . . . . . . . . . . T GTAGTTG . . . . . . A . . . . CGG . . . . A . . . . . . . . . . T . . . . . A . . . . . . . . . . . . . T . . . . . A . . . . . . . . . . . TT T . . . TAT . AT T .
blockSeqs : . . CGG . . . . A . . . . . . . . . . C . . . . . T . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . TT C . . . AAC . AT A .
blockSeqs : . . CGA . . . . . . . . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . T . . . AAC . TA A .
blockSeqs : T . . . AAG . AT . .
blockSeqs : . . GCC . TC . .
blockSeqCons : AT TG* C****** G* T******** C* AG**** T**** GAAGTCG**************************** ******** CGG***************** *** ** ** T** ****** A********** TN* C******* ** AT**
originalCons : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAA----------------AAATGCAG--------ATCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA----G-TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------C-GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAATT-AATATGTCAGCCC--GCGGGCTGACAAAT
finalCons : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAAC------TCGTAATTTTGAA--A--GTGTTAG-TAC---AAAAA----------------AAATGCAGT--------TCTGTACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTAAGAA-TCGCTA--------TCATTTTCTC-TAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTAAG----TA-CT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCGT----GCGAAGTCG----------------------------A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGACGG-----------------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--GTGTTGAT-AT-CA---CTGAA--CTTCT--TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTAA----------TTTTT--T-CG-T-AT-T-TCA-TTC-C-C------AC----AATN-CCCAGC-------GACGCACGCGCAGTT-CAA--G-ATAA-A--------C-C-ACAAT--AATATGTCAGCCC--GCGGGCTGACAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC
Alignments
lowQualScore : 1 1 1 1 11111111 111111 111 1111111 11111 11 2222222222222222 22222222222 33333333 222 1111 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 55555555555555555555555555555555555 1111 22222222 111 111 44444444444444 22222222222222222222 1111111111111 1 1111111 111111 111111 11111111111 1111111 111111 111111111 2222222222222 1111
lowQualScore : 1 1 6 1 3 66 0 0 11111111 8 0 0 6 6 5 666666 444 77 8888888 99 22222 00 888 9999999999999999 3 99 2 3 9 1 33333 333 22 1 4444 333 111 1 55555555555 5 00000000 77 55 0 5 000 5 5 5 5 7777 5 44444 88 999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 5 5 5 5 77777 88888888888888888888888888888888888 5 5 5 0000 5 33333333 000 333 5 5 33333333333333 5 4 4 55555555555555555555 4 55 8 777 8888888888888 0 55 4 4 4 0 8888 8888 4 4 2 777 6666666 4 8888 4 777 4 666 8 4 4 222222 66 4 4 0 66 66 4 4 777 66 555 4 4 4 222222 4 77777777777 99 4 8 3333333 4 4 111111 8888 777 000000000 44 3 77 3333333333333 3 8888 5 44
lowQualScore : . . . . . .. . . ........ . . . . . . ...... ... .. ....... .. ..... .. ... ................ . .. . . . . ..... ... .. . .... ... ... . ........... . ........ .. .. . . ... . . . . .... . ..... .. ................................................................................. . . . . . . . ..... ................................... . . . .... . ........ ... ... . . .............. . . . .................... . .. . ... ............. . .. . . . . .... .... . . . ... ....... . .... . ... . ... . . . ...... .. . . . .. .. . . ... .. ... . . . ...... . ........... .. . . ....... . . ...... .... ... ......... .. . .. ............. . .... . ..
lowQualScore : 3 7 7 0 3 44 0 0 11111111 0 2 2 7 7 7 444444 444 99 7777777 77 99999 22 888 4444444444444444 5 22 0 2 4 0 55555 000 00 0 0000 000 555 0 99999999999 0 00000000 22 11 4 0 333 7 7 7 7 1111 7 33333 99 111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 0 0 0 0 0 88888 00000000000000000000000000000000000 0 0 0 6666 0 11111111 555 888 7 0 99999999999999 0 0 0 88888888888888888888 0 55 0 000 9999999999999 7 55 0 0 0 9 5555 5555 0 0 0 000 0000000 0 5555 0 000 0 666 3 0 0 888888 11 4 4 8 11 11 4 4 888 11 333 4 4 4 888888 4 66666666666 55 0 0 4444444 0 0 555555 5555 222 999999999 22 6 99 1111111111111 3 0000 7 66
consensus : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAAA----------------AATGCAGTTCTG--TACGCCGACGCCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTA--------AGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA---AGTACT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--G--TGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CGT-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------CG-A-CGCACGCGCAGTT-CAAG--ATAA-A--------C-C-ACAA-T--AATATGTCAGCCC--GCGGGCTGACAAAT
Reference ( family-7566 ) : GAAGTTTTTAAATCTA-TGTGGAA-CAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCA-GT-A-CACAGA------TTCATCCCCTCTTG-TTT--TTCTTCTTAA-----C-TCGTAATTTTGAA--A--GTGTTA-GTAC---AAAAAA----------------AATGCAGTTCTG--TACGCCGACGNCGGCNNNCNTNNNANNANAGNNNNCACCGCGTTNNNTNGNTNTCCTA--------AGAA-TCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTT--AAAGA-T-CATA-TTCTA-GAGGGTTA---AGTACT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGCNACTAGCT-----GANCT--AG-CTTAA--TC--TATTACAGT-GTG--GAC-TGTCCCGGGAAGGG--GCCCTTGCT----T----CTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-AA---G-----TC----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--G--TGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CGT-AT-T-TCA-TTC-C-C------AC----AA-TNCCCAG------CG-A-CGCACGCGCAGTT-CAAG--ATAA-A--------C-C-ACAA-T--AATATGTCAGCCC--GCGGGCTGACAAAT
gi|1 : AGGTTTTTAA-TC-A-TGTAGAATCAGAGACATA-AGTTATATTATGTCTCTGAAGTGTGGA-AGTCT-A-GT-A-CACAGA------TTCATCCCCTC----TTT--TTTTTCTTAA-------TCGTATTTTTGAA--A--GTGTTATACAC---AAAAAA----------------AATGCAG
gi|1 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaA--------AGAA-TCGCTA--------TCATTTTCTTCTAT-GGATTTT-TTTTT--AGGGA-T-CATA-TTCTT-G-GGGTTA---GATA-----TCAATTTAGCTCAGATT-----TCTAGTTTGAAAGGNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----TACC-CTCC-CG-TCTGCAGGCA-T-CTA-GTG-----GCAGACAAATTTGG-AA---G-----TT----GG---A-C-G-C----GAT-CGCCGAGACTCTA-TCT---ATAGAA-TG-------A------A-TACCT-C-AT-----------------------------TTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CTTCA---TT--T----CC-AAG----A-ATCGTTTTAATACA--ATTTCTCTATTGTGTGAT-C-CTTTCTC------TATTGAGGTTTTT-CTTAT-ATCATAGT--AAA--GCGTGTTGAT-GT-CA---CTGAA--CTTC-T--CA-TAAGAACCT-TTTT-TAAATTCCCT-TTAGATTT--A-------AATTTTTTT--T-CGTTAT-A-TAAATTC-C-C------AC----AA--ACCCAG------CGGA-TGCACGCGC-GTT-CAAGTGGTAT-C--------T-C-ACTT-TC-AAT-TGTCAGCCC--GC-GGCTGAatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcaagaatcgctatcattttcttctatggatttttttttagggatcatattcttggggttagatatcaatttagctcagatttctagtttgaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccctcccgtctgcaggcatctagtggcagacaaatttggaagttggacgcgatcgccgagactctatctatagaatgaatacctcatttttgagaaaatgtttattgattacatgtaccttcatttccaagaatcgttttaatacaatttctctattgtgtgatcctttctctattgaggtttttcttatatcatagtaaagcgtgttgatgtcactgaacttctcataagaaccttttttaaattccctttagatttaaattttttttcgttatataaattcccacaaacccagcggatgcacgcgcgttcaagtggtatctcactttcaattgtcagcccgcggctga
gi|10 : taaaagaacagccgaggttgcgaatgattactgctaaaaagtgtacctgaattataaaaaaggtttttaatcatgtagaatcagagacataagttatattatgtctctgaagtgtggaagtctagtacacagattcatcccctcttttttttcttaatcgtatttttgaaagtgttatacacaaaaaaaatgcagatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcGAAGTTTTT-AATCCA-TGT-GAA-CAGAGA
gi|11 : aggaaaacagccgaggctttgccgaatgatttaataaatgctaaaaagattaaccccattataacaaaaaaaaA--TGTGGATAGT-TCA-GTTA-CACAGACTTTTTTTCAACTCCCTTTG-TTT----CTTAAAAA-----C-TCGTCACTTTGAACCAATGTGTTACGTAC---AAAAAA----------------AAacagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaaatgccagattctgatgaccgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaagaatcgctatccacttt
gi|12 : ttaaaaaattccgacgaaaatatttaccaacaatccagtcgaaaggtgcaaagtgtttattctttactgcttaaaccacagggtaaatgtgaaagccctaaaggaaaacggccaaggatttgccgaacagatttaatgctaaaaaaatgtacccgatttataaaagacaagttttttaaccgtGAAGTTTTTAAATCTA-TGTGGAA-CAGAGA-GCATAGT-AG-TTATAT-----------GGA-AGTCTCA-GT-A-CACGAT------TTCATCCCCTCTTG-TTTGGTTCCTCTTAA-----CTTCGTATTTTTGAA--A--GGGTTA-GTAC---CCAAAA----------------AATGCAG-TCTG--TACGCCAAag
gi|13 : tgcacgaatgaagaaa-CACAGA------TTCATCCCCTCTT--TTT--TTCTTCTTTATTATTC-TCGTA-TTTTGAA--A--GTGTTA-GTAC---AAAAAAAAAATTATAAAAATAAAATGCAGTNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA-TCGCTA--------TCATTTTCT-TTAT-GGAATTT-gcgttgcagggtaccgcgtttttgcttccctgtgtatacacaatggtacgga
gi|14 : tcAGAAACC-TTTT-TAA------T-TCAGATTTTTA-------A---TTTTT--TTCGT-ATAT-TAA-TTC-C-C------AC----AA-TACCCAG------CG-G-AGCATGCGCAGTT-CAAG--AGAT-A--------T-C-CCAC-TTCAATATGTCAGCCC--GCGGGCTGA
gi|16 : -CTCTT-T---GA-------C---G-G------AGTCC-ATTT--T-TA-AA---A----------A--TG-TCA--C-C-GCATTACAACAATG----TA-C-ATGTA---TTAGC----TC-AAA----ACATCGCT---CT--A--TTTTATC-AATATTT-AT-CA
gi|17 : CTCA-GT-A-CACAAA------TTCATCCCCTCT---TTT--TTCTTCTTAA-----C-TCAT-ATTTTGAA--G--GAGTTA-GTAC---AAAAAA----------------AATc
gi|18 : CAG------TA-A-CGCACGCGCAGTT-CAAGT-ATAA-A--------TGC-ACTA-C--AATTTGTCAGCCC--GCGGACTGACAAcaacaataaaatgcagtcc
gi|19 : AAG--ATAA-A--------C-CCACAA-T--AATATGTCAGCCCGAGCGGGCTGACAAAT
gi|2 : TTTTTA--TCTA-TGTGGAA-CAGAGACATATg
gi|2 : agaagttttttA-TCGCTAAA------TCATTTTCT-CTAT-GGATTTT-TTTA---AAAGA-T-CATA-TTCTA-GAGGGT-----AGTACT-ACTAAATTTAGNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----T----C-CC-CG-TC-G-AGGCC-T-CTA-G-G--T--GT-----------G-AA---G-----TT----G----A-C-G-C----GAC-C--------TCTA--TA----TAAGAATG-------ATAC---C-TTCTT-T-ATGA-------C---G-GCGACGGAGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATGACTCTA-C-CTTCA---TT--T----CC-AAA----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAGA--G--TGTTGAT-AT-CA---CTGAA--CTTCTT-TCA-TAAGAAACC-TTTT-T-A------T-TCAGATTTTTA-------A---TTTTTG-T-CGTAAT-TATTG-TCC-C-C------AC----AA-TACCCAG------CG-G-AGCACGCGCA-TT-CGAA--GTGCTA--------T-C-TCAA-TTCAATTTGTCAG-CC--GCGGGATGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacatcgctaaatcattttctctatggatttttttaaaagatcatattctagagggtagtactactaaatttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgtcgaggcctctaggtgtgaagttgacgcgacctctatataagaatgataccttctttatgacggcgacggagtctattttgagaaaatgtttattgattacatgactctaccttcatttccaaaaatcgttatcattttctctattgtttatcattttctctattgggttttcttatatcatagtttagagtgttgatatcactgaacttctttcataagaaacctttttattcagatttttaatttttgtcgtaattattgtccccacaatacccagcggagcacgcgcattcgaagtgctatctcaattcaatttgtcagccgcgggatgac
gi|3 : agaagtttttttttttatctatgtggaacagagacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaaaaaaaaaataaaaaatgcagttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatacacaatggcattgtacGAAGTTTTTAAATCTACTGTGGAATCAGAGACATATAGT-AT-TTATGTCTCTGA--TGTGGA-AGTCTCACGT-AGCACAGA------TTCATCCCCTCTTGGTCT--TTTCTCTTAA-----C-TCGTAATTGTGAA--A--GTGTTA-GTAC---CAAAAA----------------AATGCAGTTCTG--TAA--CGACAGCCGTTGCCATCTAATAATAGAGTGTACCGCGTTTTATTGATTTCCTA--------AGAA-TCGCTAAGCGCTATTCATTTTCT-TTATTGGATTTT-TTTTA--AAAGA-TTCATA-TTCTACGAGGGTTA---AGTACT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAAC----AGCT-----GACCT--AG-CTTGA--TC--TAATACAGT-GTG--GAC-TGTTCCGGGAAGGG--GCCCTTGCT----A----CTCC-CG-TC-G-AGGCC-TCCTC-GCG--T--GC-----------GTAA---GCT---TT----G----A-C-G-C----GAC-CT-------TCTATATA---ATAGGAATG-------A------CTCTC-T-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAG-A---A----------A--TGTTTA--T-TGG-ATTAC----ATG----TA-C-CT-CA---TTA-C----CCAAAG----A-ATCGTT---CT-CA--TTTTATCTA-TGTTT-ATACATTTTCTC------TTATGGG--TTTTCCTTAT-ATCATAG-TTAAA--G--TGTTGAT-AT-CA---CTGAA--CTTC-TATCA-TAAGAAACC-TTTTGTAA------TGTCAGATTTCTA-------A---TTTTT--T-CGT-AT-T-TCACTTCAC-C------ACCGCAGA-TCCCAAT------CA-A-CG-GCCCGCAGTT-CAAG--ATAA-AC-------C-C-ACAA-T--AATATGTCAGCCC--GCGGGCTGACA
gi|4 : aGAAGTTTTTAA-TCTA-TGTGGAA-CAGAGACAT------AT-NNNNNNNNNNNN--NNNNNN-NNNNNNN-NN-N-NNNNNN------NNNNNNNNNNNNNN-NNN--NNNNNNNNNN-----N-NNNNNNNNNNNNN--N--NNNCCA-A------AAAAAA----------------AATGCAGTTNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--A--------AGAA-TCGCTA--------TCATTTTCT-TTAT-GGATTTTTTTTTT--AAAGA-T-CATA-TTCTA-GAGGGTT----AGTACT-ACTAAATTTAGCTCAGATT-----TCTAGTTTGAAAGNNNNNNNNN-----NNNNN--NN-NNNNN--NN--NNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NTCC-CG-TC-G-AGGCC-T-CTA-GCG--T--GC-----------G-TA---G-----TT----G----A-C-G-C----GAC-C--------TCTA-ATA---ATAGAAATG-------A------C-CTCTT-T-ATGA-------C---G-G------AGTCT-ATTT--T-GAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------AATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--G--TGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACT-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CGT-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------TA-A-CGCAAACGCAGTT-CAAG--ATAA-A--------C-C-ACAATT--AATATGTCAGCCC--GCGGGCTGACAAAT
gi|5 : GAA--AC-GTGTTA--TACCCAAAAAAA----------------AGTGCAGATCTG--GACGCCCAAGCTGGCACATCTAATAATAGAGTTACCACTGCGTTGATTGATTATCCTT--------AGAA-TCGCTAG-------TCGATGTCT--TA--GGA---T-TTTTA--AAAGATT-CATATTTCTA-GAGGGGTAT--AG--CTAACAAAA--TAGCTT---TTTTCGATCTAG-TTGAAAGCGACTAGCTTGTGAGAATTTGAGACTTAAAGTCCTTATTAC-GTGGTGATGAC-TGTCC----AAGGGCCTCCCTAGCT----A----C-CC-CGTTC-G-AGG-C-T-CTAGGCGTTT--GC-----------G-AA---AAATTTTC----GAAGTA-C-G-C----GAC-A--------TCT--ATA---GTA
gi|5 : TT-T-ATGA-------TATAG-G------AGT-T-ATCT--TAGAGAA---A-------------TGGTTAACT-T-G-ATAAC----ATG----CA-CACT-CACTTTT--T----CC-A-G----A-ATCGTT---GA-CAGATGCTCGCTA--GTTT----CATTTTCT--------ATTGGT--TTAT-CTTATGATCAT--TTTAAACAG--TGTTGAT-ATGCGAGGTCGAAGACT-C-T-TCA-TAAGAAACG-TGTT-TAA------T-TCCGATGTCTA-------A---TTTTT----AGT-AT----CA-TGC-CGC------AC----AA---CACAG------TA-AACGCACGCGCAGTT-CAAG--ATAA-A--------G-C-ACTA-T--AATATGTCAGCCC--GCGGGCTGACAAActacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtcttttatgatataggagttatcttagagaaatggttaacttgataacatgcacactcactttttccagaatcgttgacagatgctcgctagtttcattttctattggtttatcttatgatcattttaaacagtgttgatatgcgaggtcgaagactcttcataagaaacgtgtttaattccgatgtctaatttttagtatcatgccgcacaacacagtaaacgcacgcgcagttcaagataaagcactataatatgtcagcccgcgggctgacaaa
gi|6 : gaaacgtgttatacccaaaaaaaagtgcagatctggacgcccaagctggcacatctaataatagagttaccactgcgttgattgattatccttagaatcgctagtcgatgtcttaggatttttaaaagattcatatttctagaggggtatagctaacaaaatagcttttttcgatctagttgaaagcgactagcttgtgagaatttgagacttaaagtccttattacgtggtgatgactgtccaagggcctccctagctaccccgttcgaggctctaggcgtttgcgaaaaattttcgaagtacgcgacatctatagtactacgcattgatgaataagacatttcgtttaagagatgatgtgttgaatatcccgtctAA-T-GCTA--------TCATTTTGT-CT---GGATTTT-TTTT---AAAGA-T-CATA-TTCTA-GAGGGTTA---A-TACT-ACTAAATTTAGCTCAGATT-----TCTAGTTGAAAAGCTACTAGCT-----G--------------------TNNNNNNNN-NNN--NNN-NNNNNNNNNNNNNN--NNNNNNNNN----N----NNCC-GA-TC-G-AGGCC-T---A-GCG--TTGGC-----------G-AACCAA-----TT----G----AAC-G-C----GAC-C--------TCTATATA---ATAGAA-TG-------ATA----C-CTCTT-TTATGAGGGCCGAC---A-G------AGTCT-ATTT--T-TAGAA---A----------A--TGTTTA--T-T-G-ATTAC----ATG----TA-C-CT-CA---TT--T----CC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-C-TAT-ATCATGGTTTAGA--G--TGTTGAT-AT-CA---CTGAA--CTTC-T-TTA-TAAGAAACCTTTTT-TAA------T-TCAGATTTTTA-------AT--TTTTT--T-CGT-ATAT-TAA-AAC-C-C------AC----AA-TATCCAG------CG-G-AGCACGCGCAGTT-CGAG---TGCTA--------T-C-TCAA-TTCAATTTGTCAGCCC--
gi|7 : aaaaaaaaaaaaaaaatgcgttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtatacataaatgcattgtacAAAAT----------------AATGCAGTTCTGTATACGCCAA-GCCG
gi|7 : A--------AGAAATCGCTA--------TCATTTTCT-CTAT-GGATTTT-TTTTTTAAAAGA-T-CATA-TTTTA-GAGGGTTAATTAGTGCT-ACTAATTTTAGCTCAGATT-----TCTAGTTTGAA----ACTAATT-----GAG-----A-CTGAA--T-----TTATAGT-GTG--GAC-T----------------------------------CCC-CG-TC-G-AGGCCTT-CTA-GCG--T--GC-----------G-AATTTGTAGC-TT----G----A-T-GAC----GACAC--------TCTC-ATATATATAG-AATGACTTTATA------C-CTCTT-T-ATTA-------C---G-A------AGTCT-ATTT--T-GAGAACTGAGGTTTCCCGTA--TGTTTA--T-T-G-ATTAC-----------TAGC-CT-GG---TT--CCCTGCC-CAGTTCTA-AGCGTT---AT-CA---TTTCTCTA-TG--------ATTTTTTC------TA---GG--CTT------------------------------GAT-AT-CA---CTGAA--CTTC-T-TCATTTAGAAACC-GTTT-TAA------T-TCAGATTTCTATTTTTTTT---TTTTT--T-TGT-AT-A-TCC-CTT-C-C------AC----AATTTCCCAT------TC-A-AGCATGCGCAACT-GAAA--TTAG-C--------C-C-ACTA----AAT-TGTCAGCCC--GCGGGCTGACAttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcaagaaatcgctatcattttctctatggattttttttttaaaagatcatattttagagggttaattagtgctactaattttagctcagatttctagtttgaaactaattgagactgaatttatagtgtggactccccgtcgaggccttctagcgtgcgaatttgtagcttgatgacgacactctcatatatatagaatgactttatacctctttattacgaagtctattttgagaactgaggtttcccgtatgtttattgattactagcctggttccctgcccagttctaagcgttatcatttctctatgattttttctaggcttgatatcactgaacttcttcatttagaaaccgttttaattcagatttctatttttttttttttttgtatatcccttccacaatttcccattcaagcatgcgcaactgaaattagcccactaaattgtcagcccgcgggctgaca
gi|8 : aaaataatgcagttctgtatacgccaagccgttgcacactaattataattaatgattttcctgtgtatacacaatgggcatgcggaatggctgtaccccgggctcG--GACCTGTCC--GGAAGCG--GCC-TTGCTAAACTGCGACGCCGCG-TC-G-GCGCC-T-CTA-GCGAGT--GC-----------G-TA---G-----TCTTGCG----A-CCG-CACTGGAC-C--------TCTA-ATAT--ATAGCCATG-------AATTAAAC-CTCTTCT-ATGA-------CC--GCG------AGTCTTATTTCTT-GAGAA---A----------AAATAGTTA--TGT-G-AT-AC----ATG----TA-C-CT-CA---TT--C----CC-AAG----A-ATCGTT---AT-CA--ATTTCTTTATTGTTT-AT-CATTTTCTC------TATTGGG--TTTT-CTTAT-ATCATAGTTTAAA--G--TGTTGAT-AT-CA---CTGAA--CTTC-T-TCA-TAAGAAACC-TTTT-TAA------T-TCAGATTTCTA-------A---TTTTT--T-CGT-AT-T-TCA-TTC-C-C------AC----AA-TTCCCAG------TA-A-CGCACGCGCAGTT-CAAG--ATAA-A--------CAC-ACAA-T--AATATGTCAGCCC--GCGGGCTGACA
gi|9 : CTT-T-ATGA-------C---G-GG-----AGTCT-ATTT--TTGAGAA---A----------A--TGT----------------------G----TA-C-CT-CA---AT--T----TC-AAG----A-ATCGTT---AT-CA--TTTTCTCTATTGTTT-AT--ATTTTCTCCCCCCTTATTGGG---TTT-CTTAT-A-CATAGTTTAAA--G--TGTTGATAAT-CA---CTGAA--CTTC---TCA-TAAGAAAC
gi|9 : TCCTA-------A---TTTTTCTT-CGT-AT-T--CA-TTC-C-CGGCCTCAC----AA-TTCCCAGTAACCGCG-A-CCCTCGCGCAGTTTCAAG--ATAA-AACGTTGAAC-C-ATAT-C--AATATGTCAGCCC--GCGGGCTGACAAAgcggtagtggggtataatatcagcttttattttgcagaaccctttatgggccgttacttttgtctttgttctcctaatttttcttcgtattcattcccggcctcacaattcccagtaaccgcgaccctcgcgcagtttcaagataaaacgttgaaccatatcaatatgtcagcccgcgggctgacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAACCAGTCGATACCATATACATGTATCAAGGTGCAAAGTGTTTATTCTTTACTGCTGAAACGGCCGAGGTTTGCCGAATGTTTTAATTGCCTAGAAAAAAGATTTACCATTAT
Unaligned ( gi|20 ): GGTGCAAAGTGTATATTCTTTACTCATCCGAGGTTTGCC