lowQualScore : 1 3 1111 44 222222 44444444444 11111111 1 444444444444 111111 111 1 22222 1 2222 111111 111111 33333333333 1 11 11111 22 11 1
lowQualScore : 2 5 4 3 7777 0 0000 7 1 3 1 11 3 1 4 8888 66 444444 3 55 33333333333 0 0 3 888 44444444 5 888 888 66 9999 4 66 9999 4 6 9999 2 4 4 0 9999 4 9999 4 3 8888 777 0 333333333333 4 0 444444 111 5 5 99 5 1 00000 9999 1 5 5 5 5 1 3 99 3 1 6666 5 222222 000000 9999 55 4 2 66 4 4 5 55555555555 3 1 55 66 5 44444 2 0 666 4 44 77 8888 9 4 4 4 2 1 4 4 6
lowQualScore : . . . . .... . .... . . . . .. . . . .... .. ...... . .. ........... . . . ... ........ . ... ... .. .... . .. .... . . .... . . . . .... . .... . . .... ... . ............ . . ...... ... . . .. . . ..... .... . . . . . . . .. . . .... . ...... ...... .... .. . . .. . . . ........... . . .. .. . ..... . . ... . .. .. .... . . . . . . . . .
lowQualScore : 2 6 0 6 7777 1 6666 3 4 7 4 00 9 4 9 3333 99 555555 1 22 99999999999 1 2 4 888 66666666 0 888 888 11 4444 4 11 4444 4 2 4444 2 4 4 1 4444 4 4444 4 8 1111 222 2 000000000000 3 7 777777 777 7 7 66 7 4 99999 4444 7 7 7 7 7 0 0 00 7 7 9999 0 888888 999999 4444 22 4 9 11 4 4 8 99999999999 2 4 55 11 0 88888 2 1 444 0 00 99 5555 4 0 0 5 2 0 4 1 7
consensus : TACAGTTGACTCCGGGTATA-ACGAGGT-G----GATGGGGAACG----AAAAATATCTCGTTATAACCGNCATTCGTTGT--ATCCGTCATCACAATTTTGAAATTC-ACAAT--TTTTGTTTCCAA-TGAAATCGC-TT--T--TTTGCGTG---AAGCCA-----TT-GT---TG---AA--AGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AATT-TGCG----A-TTTTTAAG--T-TAATTAAAT--GAACTTTTGTTAGGA-TGTTAGGAGACACCTGTG---T--CGTACCG--TTA-CCTA-CC-TG-ATAAAGT--CCTGT-G--CGATC-AACCAT-G-TA-GCGAGCACGCCTCGTTATATCCGAGGACGCN-TTC-TG------TAGAAGGGG--T-TNAA----ATAT-TACC-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-TTG---T---AACAGGAATATTTCTAATAGAAAT-AT-GA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTATATGCGGT----ATCTCGT-TA-TATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Reference ( gi|1 ) : TACAGTGGACTC-GGGTATA-ACGAGGT-G----GATGGGGAATG----AAAAATATCTCGTCATAACCGTCATTCGTTGTGAATCCATCATCACAATTTTGAAATTC-ACAAT--TTTTGTTTTCAA-TGAAATCGCATT--T--TTTGCATG---AAGCCA-----TT-GT---TG---AA--AGTGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-ATGAAAACAACTC----AATT-TGTG----A-TTTTCAAA--T-TAATTAAAT--AAACTTTTGTTAGGAGTGTTAGGAGACACCTGTG---T--CGTACCA--TTA-TCTA-CT-TG-ATCAAGT--CCAGT-G--CGATC-AACCAT-G-TA-GCAAGCATGCCTCATTCTATTCGAGGACACA-TTT-TG------TAGAAGGGG--T-TAAA----ATAT-TACC-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC---G---T---AACAGGAATATTTCTAATAGCAAA-AT-GA-A----AGAAATTGGCCAGGACACAAA-ATT-TG-TCTTTTTATATGCGGT----ATCTCAT-TA-TATCTGAGGTTGTTATA-CCCGAAGCTCACTGTA
gi|5 : TACAGATGACTCCGGGTGTA-ACAAGGT-G----GATGGGAAACA----AAAAATATCTCGTTATA-CCGTC-TTCGTTGTTATTCCATCATCACAAT---------------T--TTTGGCTTCCAA-AAAAAT--------------ACGTG---AAGCCA-----TT-GT---TG---AA--TGTGAAG----ACCGT--TGG----TG-TGAAGTTACCT----GAGGACT-ATAAACACAAATC----ATTT-TGCA----A-TTTT-AAA--G-TAATTAAAT--AAACTATTGTTCGGAATGTTAGGAGACACCCGTG---T--CGCACCG--ATA-CATA-CC-TG--------------T-A--TGATC-AACCAT-G-TAAGCGAGCACACCTCGTTATATCCGAGGACGCT-TTT-TG------TAGAAGGAA--T-TGAA----ATAT-TACC-TCTTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC---G---T---TACAGGAATATATCTACTAGAAAT-AT-GA-A----GGAAATTGGCTGGGACACAAT-TTT-TT-TCTCGTTATATGCGGT----ATCTCGT-TA-TACTCGA
gi|3 : aTACAGTTGACTCCGGGTATA-ACGAGGT-G----GAGGGGGA--G----AAAAA-ACTTC--------------TCGTTAT--ATCCGTCATTATCATTTTGAAATTC-ACAAT--TTTTGTTTTCAA-TTAAATCA-ATT--T--T-------------CCT-----TT-CT---TG---AA--AATGAAA----AT-AT--TGG----TA-TGAAGTTACAC----GAAAACT-GTGAAAATAACTG----AATT-TGTG----A-TTTTTAAG--T-TAATTAAAT--GAACTT---------GTGTTAGGAGACATCTCTG---C--CGTACCG--CTA-TCCA-GC-TA-ATAAAGT--TCTGT-G--CGGTC-AACCAT-G-TA-GCGAGTATGCCTCGTTATA-TCGAGGGCTCT-TTC-TG------TAGAAGGGA--TATAAACATTACATGTACA-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTCGTTG---T---AACAGGAATATTTCTAATAGAAAT-AT-TACATTTTAGAAATAGGTCGGGACATAAA-TTTATT-TCTCCTTATATGC-GT----ATCTCGT-TA-TATTCAAGCTTGTTATA-CCCGAAatcc
gi|17 : TACAGTGGATTTTGGGTATA-ACGAGCTCG----GATtaccaccg
gi|19 : cacaacatttttctcattatatgcggtatttcgtataTACAGTTGACTCCGGATATA-ACGAGGT-G----AATGGGGA
gi|20 : gTACAGTTGACTCCGGGTATA-ACGAGGT-G----G
gi|10 : aACAGTTGACTCCGGGTATA-ACGAGGT-GCATGGATGGGGAATG----AAAAATATCTTGTTATAACCGACATTCGTTGT--ATCTGTCATCACA----------------AT--TTTT---TCCAA-TGAAATCGC-TT--T--TTTGCGTG---AAGACA-----TT-GT---TG---AA--AATGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-AT-------ACTC----AGTT-TGCG----A-GTTTTAAA--
gi|8 : CAGTTGACTCAGGGTATA-ACGAGGT-G----GATAGGGAACG----AAAAATATCTCGTTATAATCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATTT-ATAAT--CCC--CCCCCAA-GAAAATCGTGTTTCT--TTTATGTG---AAGCCT-----TT-GT---TA---AA--AGTGAAT----AC-GG--TGG----TG-TGAAGTAACAC----GAGGACT-ATGAAAACAACTC----AATT-TGCC----A-TTTT-GAA--G-TGATTAAAT--GATCTATT
gi|18 : AGTTGACTCCGGGTATA-ATGAGGT-G----GATGGGGAATG----AAAAATA
gi|4 : GTTGACTC-CGGTATATGCGTGGT-G----GATTG--ACTACTCTAAAATTATC-CGTTATAACGAGCATTTGTTGT---TGTGTCATAACAAATT-GAAATTCCAAAAT--TTCC----CCCA-TGAAAT-G---T--T--TTTCTATAGATAAGT-------TT-GT---TG---AACAAGTGAAG----GC-ATGATGG----TG-T--AATTACAT----G-GGACT-ATAAAAA-A--TT----ACTT-TGTA----ATTTTTCGTA--TGTAATTGA----AAAGTTTGGTTAAGA-----AG-----ACCTGTGTTTT--TGTACGGATTTA-TCTAGCC-AG-AT-AAGT--C--GTGG--CGTTCAAAATAT-GTTA-ACA-----GACT--TTTCATCCAAGGATTC--TTC-TG------TA------------AAG----ATA----------TTGTAAG--CAAAATTCTCCGCTGTAAC-AATCTC---G---TA--AACAGG-ATA-TTCTATT--CAAA-ATAGA-A----GGAAATTGGCCAG-----AAATATT-T--TCTCTCGATATAAGATATGAATCTC-T-TGTTACCCGA-GCTGTAATATTCTGAAGCCCA-TGTA
gi|2 : tataatGGTATA-AAGAGGT-G----GATGGAGAATG----AAAATTATCTCATTATAACCGCCATTCATTG--AATCCGTCATTACAATTTTGAAATTC-ACAAT--TTTT---CCCAA-TGAAATTTTTTT--TCTTTTGCGTG---AAGCTA-----TT-AT---TG---AA--AGTGAAGGTCTAC-AT--TGG----TG-TGAAGATACAC----GTGGACT-ATGAAAACAACTC----AATT-TGTG----G-TTTTTTAG--T-AAATTTAAT--GAACTTTTGT----A-----AGGAGAAACCTGTG---T--CGTACCA--TTG-TGTA-CC-TG-ATAAAGT--CCTGT-G--CGATT-AACCAT-G-TA-GCAAGCACGCCTCGTTATATCCGAGGACGCC-TTC-TG------TTGAAGGGG--T-TTAA----ATAT-CACC-TCTTTGTAAG--TGAAA-TCT-CGTTGTAACTGATCTCATTG---T---AATAGGAATATTTCTAATAAAAAT-AT-GA-A----GGAAATTGGCCAGGACAC-AA-GTT-TGTTCTCGTTATATGCGGT----ATCTCGT-TG-TATCCGAGCTCGTTATA-CCCGAAGCTCA
gi|14 : GT-G----GATGGGGAATG----AAAAATACCTCGTTATAATCGTCATCCGTTGT--ATCTGTCATCACAATTTTGAAATTT-ACAATTATTTTCTTTCCCATTGAAAT
gi|13 : AAT--TTTTGTTTCC--------TT---TC--T--TTTGCGTG---AAGTGAAGTAATT-GT---TG---AA--AATGAAG----AC-AT--TAG----TG-TAAAGTTACAT----GTGGACT-ATGAAAACAACTC-----ATT-TGCG----A-TCTTTAAG--T-TAATCAAAT--GAACTTTTGCTAAGgatgttt
gi|11 : GAAATCGCTTT--TG-TTTGCATG---TA--CA-----TTTGTAAATGCATGA--AGTGAAG----AC-AA--TGG----TG-TGAAGTTCCAC----GAGAACT-ATGAACACACTTC----AATT-TGCG----A-TTTTAAAG--T-TAATTAAAT--GACCTTT---------TGTTAGGAGACACCTGTG---A--CGTATCG--TTA-CCTA-CC-TG-ATCAAGT--CCTGT-T--CAATC-AACCAT-G-AA-Gt
gi|6 : A--AGTGAAG----AC-AA--TGGGATATGATGAAGTTCCACCCAAGAGAACTTATGAA--CAACTCTACAAATGGTGTGCTCGA-TTTTAAGAGTT-TAATTAAATCGAACCTTTTGTTAG------TAG-ACAGACCTGTG---TTGCGTATCG--TTAGCCTA-CTCTGCATCAAGTATCCTGT-GTTC-ATC-AACCATTG-AA-GTGAGCATGCCTCGTTATATCCTAGGACGTAGTTT-TGGGCTTATAGAAGGGGA-T-CTAA----ATAT-TTCCATCTTTG-GAGCCCCAAA-CCC-CATAGTA--------------------AACAGGAATA-TTCTAATA
gi|7 : GTGTTAGGAGACACCTGTG---T--CAAACCG--TTA-TCTA-CC-TG-ATAAAGT--CCTGA-G--CAATC-AACCAT-G-TA-GCGAGCACGCCTTGTTATATCCGAGGACGCT-TTC-GG------TAGAAGGGG--T-TTAG----ATAT-TACC-TCGTTGTAAG--TGAAA-TCT-CGCTGTAATCAATCTCATTG---T---AACAGGAATATTTCTAATAGAAAT-AT-AA-A----GGTAACTGGCTGGGACACAAA-ACT-T--TCTCGTTATATGCGGT----ATCTCGC-TA-TATCCGAGCTTGTTATA-CCCAAAGCCCACTGT
gi|9 : AGCACACCTTGTTATATTCAAGGACG-A-TTTCTA------TAGAAAGGG--T-TAAA----ATAT-TACC-TCAATGTAAG--GGAAA-TCT-CGATGTAACCGATCTC---GATGT---AACAGGGATGTATTTAATATAAAT-AT-AA-T----GGAAATTGGCCGGGACACAAC-ATT-TT-TCTCGTTATATGCGGT----ATATCGT-TA-TATCCGAACTCGTTATT-CCCGAAGCCCAC
gi|12 : -TG------TAGGAGGGT--T-TTAA----ATAT-TACC-TCGTTGTAAG--CGAAA-TCT-TGCTGTAATCAATCTC---G---TTGTAACAGGAATATTTTTAATAGAAAT-AT-AA-A----GGAAATTGGCTGGGACACAGA-GTT-TT-TGTCGTTATATGCAGT----ATTTCGT-TA-TATCTGAGCTCGTTATA-CCCGAAGCCC
gi|14 : acttccG------TGGATGGGGAAT-GAAA----A-AT--ACC-TCGTTATAAT--CGTCA-TC--CGTTGTATCTG
gi|15 : AAATAT-AA-A----GGAAATTGGCTGGGACA-----ATT-T----TCGTTATATGCGGT----ATTTCGT-TA-TATCCGAGCTCGTTAAA-CCAAAAGCCCACTGtcatcacaattttgaaatttacaattattttctttcccattgaaatgatgttt
gi|17 : gCACAAC-ATT-TT-TCTCATTATATGCGGT----ATTTCGTATA--ATCCGAGCTCGTTATA-CCCAAAATCCACTGTA
gi|16 : TT-TT-TCTCGTTAAATACGGT----ATCTCGT-TA-TTTCCGAGCTCATTACA-CCTGAAGCCCA-TGTA
Alignments
lowQualScore : 11 11111111 2222222 222222222222 1111111 4444444444 111111 111111 1111111 3333
lowQualScore : 4 7777 1 66 0 2 0 11 0 5 33333333 1 4 0 0000000 111111111111 0 4 777 777 55 8888 4 55 8888 4 8888 1 4 3 8888 55 4 55 5 2222222 4 0000000000 66 111111 66 5 666 5 6 66 0 66 0 5 5 2 0 0 99 222222 4 2 2222222 2 66 4 4 1 6666 4 1 4 9999 666 3 3 666 3 4 2
lowQualScore : . .... . .. . . . .. . . ........ . . . ....... ............ . . ... ... .. .... . .. .... . .... . . . .... .. . .. . ....... . .......... .. ...... .. . ... . . .. . .. . . . . . . .. ...... . . ....... . .. . . . .... . . . .... ... . . ... . . .
lowQualScore : 0 7777 7 11 1 8 1 99 1 0 11111111 8 4 7 7777777 000000000000 1 4 888 888 55 5555 0 55 5555 0 5555 1 0 1 5555 55 0 55 0 0000000 4 5555555555 99 888888 99 0 222 0 1 99 4 99 2 0 0 2 2 2 88 888888 4 6 8888888 9 11 4 4 9 6666 4 9 4 4444 666 6 6 444 6 0 5
consensus : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC-TTTCTG------TAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Reference ( family-729 ) : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGNCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-CCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC-NTTCTG------TAGAAGGGG-TTNAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
gi|1 : TACAGTGGACTC-GGGTATA-ACGAGGTG----GATGGGGAATG--AAAAATATCTCGTCATAACCGTCATTCGTTGTGAATCCATCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TGAAATCG---CATTTT---TTGC-----ATGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-ATGAAAACAACTC----AAT--T-TGT--GATTTTCAAA---T---TAATTAAAT-AAACTTTTGTTAGGAGTGTTAGGAGACA--CCTGTG---T--CGTACCA--TTA-TCTA-C-TTG-ATCAAGT--CCAGTG--CGATCAACCAT-GTA-GCAAGCATGCCTCATTCTATTCGAGGACAC-ATTTTG------TAGAAGGGG-TTAAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-AACAGGAATATTTCTAATAGCAAAATGA-A----AGAAATTGGCCAGGACACAAA-ATT-TG-TCTTTTTAT---ATGCGGTATCTCAT-TATATCTGAGGTTGTTATA-CCCGAAGCTCACTGTA
gi|10 : ACAGTTGACTCCGGGTATA-ACGAGGTGCATGGATGGGGAATG--AAAAATATCTTGTTATAACCGACATTCGTTGT--ATCTGTCATCACAATTTT----------------------TTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGACATT-GT---TG---A--AAATGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-AT-------ACTC----AGT--T-TGC--GAGTTTTAA
gi|11 : GAAATCG---C-TTTTGT-TTGC-----ATGTA--CATTTGTAAATGCATG--AAGTGAAG----AC-AA--TGG----TG-TGAAGTTCCAC----GAGAACT-ATGAACACACTTC----AAT--T-TGC--GATTTTAAAG---T---TAATTAAAT-GACCTTT---------TGTTAGGAGACA--CCTGTG---A--CGTATCG--TTA-CCTA-C-CTG-ATCAAGT--CCTGTT--CAATCAACCAT-GAA-Ga
gi|12 : C-TTCCTG------TAGGAGGGT-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-TGCTGTAATCAATCTCGT-TGT-AACAGGAATATTTTTAATAGAAATATAA-A----GGAAATTGGCTGGGACACAGA-GTT-TT-TGTCGTTAT---ATGCAGTATTTCGT-TATATCTGAGCTCGTTATA-CCCGAAGCCC
gi|13 : aAAT--TTTTG-TTTCC---T----------T-TCTT---TTGCGTGAAGTGAAGTAATT-GT---TG---A--AAATGAAG----AC-AT--TAG----TG-TAAAGTTACAT----GTGGACT-ATGAAAACAACTC-----AT--T-TGC--GATCTTTAAG---T---TAATCAAAT-GAACTTTTGCTAAG
gi|14 : GTG----GATGGGGAATG--AAAAATACCTCGTTATAATCGTCATCCGTTGT--ATCTGTCATCACAATTTTGAAATT-TACAATTATTTTC-TTTCCCATTGAAATt
gi|15 : GAAATATAA-A----GGAAATTGGCTGGGACA-----ATT-TT----CGTTAT---ATGCGGTATTTCGT-TATATCCGAGCTCGTTAAA-CCAAAAGCCCACTGgatgttt
gi|16 : TT-TT-TCTCGTTAA---ATACGGTATCTCGT-TATTTCCGAGCTCATTACA-CCTGAAGCCCA-TGTA
gi|17 : ggtcagactattCACAAC-ATT-TT-TCTCATTAT---ATGCGGTATTTCGTATA-ATCCGAGCTCGTTATA-CCCAAAATCCACTGTA
gi|18 : AGTTGACTCCGGGTATA-ATGAGGTG----GATGGGGAATG--AAAAATA
gi|19 : TACAGTTGACTCCGGATATA-ACGAGGTG----AATGGGGA
gi|2 : gGGTATA-AAGAGGTG----GATGGAGAATG--AAAATTATCTCATTATAACCGCCATTCATTGA--ATCCGTCATTACAATTTTGAAATT-CACAAT--TTTT----CCCAA-TGAAATTT---T-TTTTCTTTTGC-----GTGAAGCTATT-AT---TG---A--AAGTGAAGGTCTAC-AT--TGG----TG-TGAAGATACAC----GTGGACT-ATGAAAACAACTC----AAT--T-TGT--GGTTTTTTAG---T---AAATTTAAT-GAACTTTTGT----A-----AGGAGAAA--CCTGTG---T--CGTACCA--TTG-TGTA-C-CTG-ATAAAGT--CCTGTG--CGATTAACCAT-GTA-GCAAGCACGCCTCGTTATATCCGAGGACGC-CTTCTG------TTGAAGGGG-TTTAAATATCAC-----C-TCTTTGTAAG--TGAAA-TCT-CGTTGTAACTGATCTCAT-TGT-AATAGGAATATTTCTAATAAAAATATGA-A----GGAAATTGGCCAGGACACAAG-TTT-GT-TCTCGTTAT---ATGCGGTATCTCGT-TGTATCCGAGCTCGTTATA-CCCGAAGCTCA
gi|20 : TACAGTTGACTCCGGGTATA-ACGAGGTG----G
gi|3 : aTACAGTTGACTCCGGGTATA-ACGAGGTG----GAGGGGGA--G--AAAAA-ACTTC--------------TCGTTAT--ATCCGTCATTATCATTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TTAAATCA---A-TTTT------------------CCTTT-CT---TG---A--AAATGAAA----AT-AT--TGG----TA-TGAAGTTACAC----GAAAACT-GTGAAAATAACTG----AAT--T-TGT--GATTTTTAAG---T---TAATTAAAT-GAACTT--------G-TGTTAGGAGACA--TCTCTG---C--CGTACCG--CTA-TCCA-G-CTA-ATAAAGT--TCTGTG--CGGTCAACCAT-GTA-GCGAGTATGCCTCGTTATAT-CGAGGGCTC-TTTCTG------TAGAAGGGA-TATAAACATTACATGTACATCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTCGT-TGT-AACAGGAATATTTCTAATAGAAATATTACATTTTAGAAATAGGTCGGGACATAAA-TTTATT-TCTCCTTAT---ATGC-GTATCTCGT-TATATTCAAGCTTGTTATA-CCCGAATACCACCG
gi|4 : GTTGACTCCGG-TATATGCGTGGTG----GATTGACTACTCTAAAATTATC-CGTTATAACGAGCATTTGTTGT---TGTGTCATAACAA-ATTGAAATTCCAAAAT--T-----TCCCCCA-TGAAAT-G---T-TTTT---CTATA----GATAAGT--TT-GT---TG---AACAAGTGAAG----GC-ATGATGG----TG-T--AATTACAT----G-GGACT-ATAAAAA-A--TT----ACT--T-TGT--AATTTTT-CG---TATGTAATTGAA---AAGTTTGGTTAAGA-----AG-----A--CCTGTGTTTT--TGTACGGATTTA-TCTAGC-CAG-AT-AAGT--CGTG-G--CGTTCAA-AAT-AT--GTTAACA-GACT--TTTCATCCAAGGATTC--TTCTG------TA-AAG---------ATA--------------TTGTAAG--CAAAATTCTCCGCTGTAA-CAATCTC----GTAAACAGG-ATA-TTCTATTCAAAATA-GA-A----GGAAATTGGCCAG-----AAATATT-TTCTCTCGATATAAGATATGA-ATCTCTT-GTTACCCGAGCT-GTAATATTCTGAAGCCCA-TGTA
gi|5 : tataatTACAGATGACTCCGGGTGTA-ACAAGGTG----GATGGGAAACA--AAAAATATCTCGTTATA-CCGTC-TTCGTTGTT-ATTC--CATCA------------T-CACAAT--TTTTGGCTTCCAA-AAAAAT----------------AC-----GTGAAGCCATT-GT---TG---A--ATGTGAAG----ACCGT--TGG----TG-TGAAGTTACCT----GAGGACT-ATAAACACAAATC----ATT--T-TGC--AATTTTAAAG---T----AATTAAAT-AAACTATTGTTCGGAATGTTAGGAGACA--CCCGTG---T--CGCACCG--ATA-C----------ATA------CCTGTA--TGATCAACCAT-GTAAGCGAGCACACCTCGTTATATCCGAGGACGC-TTTTTG------TAGAAGGAA-TTGAAATATTAC-----C-TCTTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-TACAGGAATATATCTACTAGAAATATGA-A----GGAAATTGGCTGGGACACAAT-TTT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATACTCGA
gi|6 : a--AAGTGAAG----AC-AA--TGGGATATGATGAAGTTCCACCCAAGAGAACTTATGAA--CAACTCTACAAATGGTGTGCTCGATTTT-AAGAGTT---TAATTAAATCGAACCTTT--------TGTTAGTAGACAGACCTGTG---TTGCGTATCG--TTAGCCTA-CTCTGCATCAAGTATCCTGTGTTC-ATCAACCATTGAA-GTGAGCATGCCTCGTTATATCCTAGGACGTAGTTTTGGGCTTATAGAAGGGGATCTAAATATTTC-----CATCTTTG-GAGCCCCAAA-CCC-CATAGTA----------------AACAGGAATA-TTCTAATAatcc
gi|7 : -TGTTAGGAGACA--CCTGTG---T--CAAACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGAG--CAATCAACCAT-GTA-GCGAGCACGCCTTGTTATATCCGAGGACGC-TTTCGG------TAGAAGGGG-TTTAGATATTAC-----C-TCGTTGTAAG--TGAAA-TCT-CGCTGTAATCAATCTCAT-TGT-AACAGGAATATTTCTAATAGAAATATAA-A----GGTAACTGGCTGGGACACAAA-A-C-TT-TCTCGTTAT---ATGCGGTATCTCGC-TATATCCGAGCTTGTTATA-CCCAAAGCCCACTGT
gi|8 : gCAGTTGACTCAGGGTATA-ACGAGGTG----GATAGGGAACG--AAAAATATCTCGTTATAATCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-TATAAT--CCC---CCCCCAA-GAAAATCGTGTT-TCTT---TTAT-----GTGAAGCCTTT-GT---TA---A--AAGTGAAT----AC-GG--TGG----TG-TGAAGTAACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--CATTTTGAAG-------TGATTAAAT-GATCTATT
gi|9 : AGCACACCTTGTTATATTCAAGGACGA-TTTCTA------TAGAAAGGG-TTAAAATATTAC-----C-TCAATGTAAG--GGAAA-TCT-CGATGTAACCGATCTC-GATGT-AACAGGGATGTATTTAATATAAATATAA-T----GGAAATTGGCCGGGACACAAC-ATT-TT-TCTCGTTAT---ATGCGGTATATCGT-TATATCCGAACTCGTTATT-CCCGAAGCCCAC
Alignments
lowQualScore : 111 11111111 2222222 222222222222 1111111 4444444444 111111 11111 1111111 3333
lowQualScore : 4 7777 6666 0 222 1 2 0 5 33333333 1 4 0 0000000 111111111111 0 4 777 777 55 8888 4 55 8888 4 8888 1 4 3 8888 55 4 55 5 2222222 4 0000000000 66 111111 66 5 5 5 5 6 66 0 66 0 5 5 2 0 0 777 11111 4 2 2222222 2 66 4 4 1 6666 4 1 4 9999 666 3 3 666 3 4 2
lowQualScore : . .... .... . ... . . . . ........ . . . ....... ............ . . ... ... .. .... . .. .... . .... . . . .... .. . .. . ....... . .......... .. ...... .. . . . . . .. . .. . . . . . . ... ..... . . ....... . .. . . . .... . . . .... ... . . ... . . .
lowQualScore : 0 7777 9999 4 000 4 5 1 0 11111111 8 4 7 7777777 000000000000 1 4 888 888 55 5555 0 55 5555 0 5555 1 0 1 5555 55 0 55 0 0000000 4 5555555555 99 888888 99 0 0 0 0 1 99 4 99 2 0 0 2 2 2 111 11111 4 1 8888888 9 11 4 4 9 6666 4 9 4 4444 666 6 6 444 6 0 5
consensus : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Reference ( family-729 ) : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
gi|1 : TACAGTGGACTC-GGGTATA-ACGAGGTG----GATGGGGAATG--AAAAATATCTCGTCATAACCGTCATTCGTTGTGAATCCATCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TGAAATCG---CATTTT---TTGC-----ATGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-ATGAAAACAACTC----AAT--T-TGT--GATTTTCAAA---T---TAATTAAAT-AAACTTTTGTTAGGAGTGTTAGGAGACA--CCTGTG---T--CGTACCA--TTA-TCTA-C-TTG-ATCAAGT--CCAGTG--CGATCAACCAT-GTA-GCAAGCATGCCTCATTCTATTCGAGGACAC--ATT-----TTGTAGAAGGGG-TTAAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-AACAGGAATATTTCTAATAGCAAAATGA-A----AGAAATTGGCCAGGACACAAA-ATT-TG-TCTTTTTAT---ATGCGGTATCTCAT-TATATCTGAGGTTGTTATA-CCCGAAGCTCACTGTA
gi|10 : ACAGTTGACTCCGGGTATA-ACGAGGTGCATGGATGGGGAATG--AAAAATATCTTGTTATAACCGACATTCGTTGT--ATCTGTCATCACAATTTT----------------------TTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGACATT-GT---TG---A--AAATGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-AT-------ACTC----AGT--T-TGC--GAGTTTTAA
gi|11 : GAAATCG---C-TTTTGT-TTGC-----ATGTA--CATTTGTAAATGCATG--AAGTGAAG----AC-AA--TGG----TG-TGAAGTTCCAC----GAGAACT-ATGAACACACTTC----AAT--T-TGC--GATTTTAAAG---T---TAATTAAAT-GACCTTT---------TGTTAGGAGACA--CCTGTG---A--CGTATCG--TTA-CCTA-C-CTG-ATCAAGT--CCTGTT--CAATCAACCAT-GAA-Ga
gi|12 : C--TTC-----CTGTAGGAGGGT-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-TGCTGTAATCAATCTCGT-TGT-AACAGGAATATTTTTAATAGAAATATAA-A----GGAAATTGGCTGGGACACAGA-GTT-TT-TGTCGTTAT---ATGCAGTATTTCGT-TATATCTGAGCTCGTTATA-CCCGAAGCCC
gi|13 : aAAT--TTTTG-TTTCC---T----------T-TCTT---TTGCGTGAAGTGAAGTAATT-GT---TG---A--AAATGAAG----AC-AT--TAG----TG-TAAAGTTACAT----GTGGACT-ATGAAAACAACTC-----AT--T-TGC--GATCTTTAAG---T---TAATCAAAT-GAACTTTTGCTAAG
gi|14 : GTG----GATGGGGAATG--AAAAATACCTCGTTATAATCGTCATCCGTTGT--ATCTGTCATCACAATTTTGAAATT-TACAATTATTTTC-TTTCCCATTGAAATt
gi|15 : GAAATATAA-A----GGAAATTGGCTGGGACA-----ATT-TT----CGTTAT---ATGCGGTATTTCGT-TATATCCGAGCTCGTTAAA-CCAAAAGCCCACTGgatgttt
gi|16 : TT-TT-TCTCGTTAA---ATACGGTATCTCGT-TATTTCCGAGCTCATTACA-CCTGAAGCCCA-TGTA
gi|17 : ggtcagactattCACAAC-ATT-TT-TCTCATTAT---ATGCGGTATTTCGTATA-ATCCGAGCTCGTTATA-CCCAAAATCCACTGTA
gi|18 : AGTTGACTCCGGGTATA-ATGAGGTG----GATGGGGAATG--AAAAATA
gi|19 : TACAGTTGACTCCGGATATA-ACGAGGTG----AATGGGGA
gi|2 : gGGTATA-AAGAGGTG----GATGGAGAATG--AAAATTATCTCATTATAACCGCCATTCATTGA--ATCCGTCATTACAATTTTGAAATT-CACAAT--TTTT----CCCAA-TGAAATTT---T-TTTTCTTTTGC-----GTGAAGCTATT-AT---TG---A--AAGTGAAGGTCTAC-AT--TGG----TG-TGAAGATACAC----GTGGACT-ATGAAAACAACTC----AAT--T-TGT--GGTTTTTTAG---T---AAATTTAAT-GAACTTTTGT----A-----AGGAGAAA--CCTGTG---T--CGTACCA--TTG-TGTA-C-CTG-ATAAAGT--CCTGTG--CGATTAACCAT-GTA-GCAAGCACGCCTCGTTATATCCGAGGACGC--CTT-----CTGTTGAAGGGG-TTTAAATATCAC-----C-TCTTTGTAAG--TGAAA-TCT-CGTTGTAACTGATCTCAT-TGT-AATAGGAATATTTCTAATAAAAATATGA-A----GGAAATTGGCCAGGACACAAG-TTT-GT-TCTCGTTAT---ATGCGGTATCTCGT-TGTATCCGAGCTCGTTATA-CCCGAAGCTCA
gi|20 : TACAGTTGACTCCGGGTATA-ACGAGGTG----G
gi|3 : aTACAGTTGACTCCGGGTATA-ACGAGGTG----GAGGGGGAG-A--AAAAACTTCTCGTTATATCCGTCATT---------------ATCA---TTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TTAAATCA---A-TTTT------------------CCTTT-CT---TG---A--AAATGAAA----AT-AT--TGG----TA-TGAAGTTACAC----GAAAACT-GTGAAAATAACTG----AAT--T-TGT--GATTTTTAAG---T---TAATTAAAT-GAACTT--------G-TGTTAGGAGACA--TCTCTG---C--CGTACCG--CTA-TCCA-G-CTA-ATAAAGT--TCTGTG--CGGTCAACCAT-GTA-GCGAGTATGCCTCGTTATAT-CGAGGGCTC--TTT-----CTGTAGAAGGGA-TATAAACATTACATGTACATCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTCGT-TGT-AACAGGAATATTTCTAATAGAAATATTACATTTTAGAAATAGGTCGGGACATAAA-TTTATT-TCTCCTTAT---ATGC-GTATCTCGT-TATATTCAAGCTTGTTATA-CCCGAATACCACCG
gi|4 : GTTGACTCCGG-TATATGCGTGGTG----GATTGACTACTCTAAAATTATC-CGTTATAACGAGCATTTGTTGT---TGTGTCATAACAA-ATTGAAATTCCAAAAT--T-----TCCCCCA-TGAAAT-G---T-TTTT---CTATA----GATAAGT--TT-GT---TG---AACAAGTGAAG----GC-ATGATGG----TG-T--AATTACAT----G-GGACT-ATAAAAA-A--TT----ACT--T-TGT--AATTTTT-CG---TATGTAATTGAA---AAGTTTGGTTAAGA-----AG-----A--CCTGTGTTTT--TGTACGGATTTA-TCTAGC-CAG-AT-AAGT--CGTG-G--CGTTCAA-AAT-AT--GTTAACA-GACT--TTTCATCCAAGGATTC---TT-----CTGTA-AAG---------ATA--------------TTGTAAG--CAAAATTCTCCGCTGTAA-CAATCTC----GTAAACAGG-ATA-TTCTATTCAAAATA-GA-A----GGAAATTGGCCAG-----AAATATT-TTCTCTCGATATAAGATATGA-ATCTCTT-GTTACCCGAGCT-GTAATATTCTGAAGCCCA-TGTA
gi|5 : tataatTACAGATGACTCCGGGTGTA-ACAAGGTG----GATGGGAAACA--AAAAATATCTCGTTATA-CCGTC-TTCGTTGTT-ATTC--CATCA------------T-CACAAT--TTTTGGCTTCCAA-AAAAAT----------------AC-----GTGAAGCCATT-GT---TG---A--ATGTGAAG----ACCGT--TGG----TG-TGAAGTTACCT----GAGGACT-ATAAACACAAATC----ATT--T-TGC--AATTTTAAAG---T----AATTAAAT-AAACTATTGTTCGGAATGTTAGGAGACA--CCCGTG---T--CGCACCG----A-T--A-C-----ATA------CCTGTA--TGATCAACCAT-GTAAGCGAGCACACCTCGTTATATCCGAGGACGC--TTT-----TTGTAGAAGGAA-TTGAAATATTAC-----C-TCTTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-TACAGGAATATATCTACTAGAAATATGA-A----GGAAATTGGCTGGGACACAAT-TTT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATACTCGA
gi|6 : a--AAGTGAAG----AC-AA--TGGGATATGATGAAGTTCCACCCAAGAGAACTTATGAA--CAACTCTACAAATGGTGTGCTCGATTTT-AAGAGTT---TAATTAAATCGAACCTTT--------TGTTAGTAGACAGACCTGTG---TTGCGTATCG--TTAGCCTA-CTCTGCATCAAGTATCCTGTGTTC-ATCAACCATTGAA-GTGAGCATGCCTCGTTATATCCTAGGACGTAGTTTTGGGCTTATAGAAGGGGATCTAAATATTTC-----CATCTTTG-GAGCCCCAAA-CCC-CATAGTA----------------AACAGGAATA-TTCTAATAatcc
gi|7 : -TGTTAGGAGACA--CCTGTG---T--CAAACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGAG--CAATCAACCAT-GTA-GCGAGCACGCCTTGTTATATCCGAGGACGC--TTT-----CGGTAGAAGGGG-TTTAGATATTAC-----C-TCGTTGTAAG--TGAAA-TCT-CGCTGTAATCAATCTCAT-TGT-AACAGGAATATTTCTAATAGAAATATAA-A----GGTAACTGGCTGGGACACAAA-A-C-TT-TCTCGTTAT---ATGCGGTATCTCGC-TATATCCGAGCTTGTTATA-CCCAAAGCCCACTGT
gi|8 : gCAGTTGACTCAGGGTATA-ACGAGGTG----GATAGGGAACG--AAAAATATCTCGTTATAATCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-TATAAT--CCC---CCCCCAA-GAAAATCGTGTT-TCTT---TTAT-----GTGAAGCCTTT-GT---TA---A--AAGTGAAT----AC-GG--TGG----TG-TGAAGTAACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--CATTTTGAAG-------TGATTAAAT-GATCTATT
gi|9 : AGCACACCTTGTTATATTCAAGGACGA--TTT-----CTATAGAAAGGG-TTAAAATATTAC-----C-TCAATGTAAG--GGAAA-TCT-CGATGTAACCGATCTC-GATGT-AACAGGGATGTATTTAATATAAATATAA-T----GGAAATTGGCCGGGACACAAC-ATT-TT-TCTCGTTAT---ATGCGGTATATCGT-TATATCCGAACTCGTTATT-CCCGAAGCCCAC
Alignments
lowQualScore : 111 11111111 2222222 222222222222 1111111 4444444444 111111 11111 1111111 3333
lowQualScore : 4 7777 6666 0 222 1 2 0 5 33333333 1 4 0 0000000 111111111111 0 4 777 777 55 8888 4 55 8888 4 8888 1 4 3 8888 55 4 55 5 2222222 4 0000000000 66 111111 66 5 5 5 5 6 66 0 66 0 5 5 2 0 0 777 11111 4 2 2222222 2 66 4 4 1 6666 4 1 4 9999 666 3 3 666 3 4 2
lowQualScore : . .... .... . ... . . . . ........ . . . ....... ............ . . ... ... .. .... . .. .... . .... . . . .... .. . .. . ....... . .......... .. ...... .. . . . . . .. . .. . . . . . . ... ..... . . ....... . .. . . . .... . . . .... ... . . ... . . .
lowQualScore : 0 7777 9999 4 000 4 5 1 0 11111111 8 4 7 7777777 000000000000 1 4 888 888 55 5555 0 55 5555 0 5555 1 0 1 5555 55 0 55 0 0000000 4 5555555555 99 888888 99 0 0 0 0 1 99 4 99 2 0 0 2 2 2 111 11111 4 1 8888888 9 11 4 4 9 6666 4 9 4 4444 666 6 6 444 6 0 5
consensus : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Reference ( family-729 ) : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
gi|1 : TACAGTGGACTC-GGGTATA-ACGAGGTG----GATGGGGAATG--AAAAATATCTCGTCATAACCGTCATTCGTTGTGAATCCATCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TGAAATCG---CATTTT---TTGC-----ATGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-ATGAAAACAACTC----AAT--T-TGT--GATTTTCAAA---T---TAATTAAAT-AAACTTTTGTTAGGAGTGTTAGGAGACA--CCTGTG---T--CGTACCA--TTA-TCTA-C-TTG-ATCAAGT--CCAGTG--CGATCAACCAT-GTA-GCAAGCATGCCTCATTCTATTCGAGGACAC--ATT-----TTGTAGAAGGGG-TTAAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-AACAGGAATATTTCTAATAGCAAAATGA-A----AGAAATTGGCCAGGACACAAA-ATT-TG-TCTTTTTAT---ATGCGGTATCTCAT-TATATCTGAGGTTGTTATA-CCCGAAGCTCACTGTA
gi|10 : ACAGTTGACTCCGGGTATA-ACGAGGTGCATGGATGGGGAATG--AAAAATATCTTGTTATAACCGACATTCGTTGT--ATCTGTCATCACAATTTT----------------------TTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGACATT-GT---TG---A--AAATGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-AT-------ACTC----AGT--T-TGC--GAGTTTTAA
gi|11 : GAAATCG---C-TTTTGT-TTGC-----ATGTA--CATTTGTAAATGCATG--AAGTGAAG----AC-AA--TGG----TG-TGAAGTTCCAC----GAGAACT-ATGAACACACTTC----AAT--T-TGC--GATTTTAAAG---T---TAATTAAAT-GACCTTT---------TGTTAGGAGACA--CCTGTG---A--CGTATCG--TTA-CCTA-C-CTG-ATCAAGT--CCTGTT--CAATCAACCAT-GAA-Ga
gi|12 : C--TTC-----CTGTAGGAGGGT-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-TGCTGTAATCAATCTCGT-TGT-AACAGGAATATTTTTAATAGAAATATAA-A----GGAAATTGGCTGGGACACAGA-GTT-TT-TGTCGTTAT---ATGCAGTATTTCGT-TATATCTGAGCTCGTTATA-CCCGAAGCCC
gi|13 : aAAT--TTTTG-TTTCC---T----------T-TCTT---TTGCGTGAAGTGAAGTAATT-GT---TG---A--AAATGAAG----AC-AT--TAG----TG-TAAAGTTACAT----GTGGACT-ATGAAAACAACTC-----AT--T-TGC--GATCTTTAAG---T---TAATCAAAT-GAACTTTTGCTAAG
gi|14 : GTG----GATGGGGAATG--AAAAATACCTCGTTATAATCGTCATCCGTTGT--ATCTGTCATCACAATTTTGAAATT-TACAATTATTTTC-TTTCCCATTGAAATt
gi|15 : GAAATATAA-A----GGAAATTGGCTGGGACA-----ATT-TT----CGTTAT---ATGCGGTATTTCGT-TATATCCGAGCTCGTTAAA-CCAAAAGCCCACTGgatgttt
gi|16 : TT-TT-TCTCGTTAA---ATACGGTATCTCGT-TATTTCCGAGCTCATTACA-CCTGAAGCCCA-TGTA
gi|17 : ggtcagactattCACAAC-ATT-TT-TCTCATTAT---ATGCGGTATTTCGTATA-ATCCGAGCTCGTTATA-CCCAAAATCCACTGTA
gi|18 : AGTTGACTCCGGGTATA-ATGAGGTG----GATGGGGAATG--AAAAATA
gi|19 : TACAGTTGACTCCGGATATA-ACGAGGTG----AATGGGGA
gi|2 : gGGTATA-AAGAGGTG----GATGGAGAATG--AAAATTATCTCATTATAACCGCCATTCATTGA--ATCCGTCATTACAATTTTGAAATT-CACAAT--TTTT----CCCAA-TGAAATTT---T-TTTTCTTTTGC-----GTGAAGCTATT-AT---TG---A--AAGTGAAGGTCTAC-AT--TGG----TG-TGAAGATACAC----GTGGACT-ATGAAAACAACTC----AAT--T-TGT--GGTTTTTTAG---T---AAATTTAAT-GAACTTTTGT----A-----AGGAGAAA--CCTGTG---T--CGTACCA--TTG-TGTA-C-CTG-ATAAAGT--CCTGTG--CGATTAACCAT-GTA-GCAAGCACGCCTCGTTATATCCGAGGACGC--CTT-----CTGTTGAAGGGG-TTTAAATATCAC-----C-TCTTTGTAAG--TGAAA-TCT-CGTTGTAACTGATCTCAT-TGT-AATAGGAATATTTCTAATAAAAATATGA-A----GGAAATTGGCCAGGACACAAG-TTT-GT-TCTCGTTAT---ATGCGGTATCTCGT-TGTATCCGAGCTCGTTATA-CCCGAAGCTCA
gi|20 : TACAGTTGACTCCGGGTATA-ACGAGGTG----G
gi|3 : aTACAGTTGACTCCGGGTATA-ACGAGGTG----GAGGGGGAG-A--AAAAACTTCTCGTTATATCCGTCATT---------------ATCA---TTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TTAAATCA---A-TTTT------------------CCTTT-CT---TG---A--AAATGAAA----AT-AT--TGG----TA-TGAAGTTACAC----GAAAACT-GTGAAAATAACTG----AAT--T-TGT--GATTTTTAAG---T---TAATTAAAT-GAACTT--------G-TGTTAGGAGACA--TCTCTG---C--CGTACCG--CTA-TCCA-G-CTA-ATAAAGT--TCTGTG--CGGTCAACCAT-GTA-GCGAGTATGCCTCGTTATAT-CGAGGGCTC--TTT-----CTGTAGAAGGGA-TATAAACATTACATGTACATCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTCGT-TGT-AACAGGAATATTTCTAATAGAAATATTACATTTTAGAAATAGGTCGGGACATAAA-TTTATT-TCTCCTTAT---ATGC-GTATCTCGT-TATATTCAAGCTTGTTATA-CCCGAATACCACCG
gi|4 : GTTGACTCCGG-TATATGCGTGGTG----GATTGACTACTCTAAAATTATC-CGTTATAACGAGCATTTGTTGT---TGTGTCATAACAA-ATTGAAATTCCAAAAT--T-----TCCCCCA-TGAAAT-G---T-TTTT---CTATA----GATAAGT--TT-GT---TG---AACAAGTGAAG----GC-ATGATGG----TG-T--AATTACAT----G-GGACT-ATAAAAA-A--TT----ACT--T-TGT--AATTTTT-CG---TATGTAATTGAA---AAGTTTGGTTAAGA-----AG-----A--CCTGTGTTTT--TGTACGGATTTA-TCTAGC-CAG-AT-AAGT--CGTG-G--CGTTCAA-AAT-AT--GTTAACA-GACT--TTTCATCCAAGGATTC---TT-----CTGTA-AAG---------ATA--------------TTGTAAG--CAAAATTCTCCGCTGTAA-CAATCTC----GTAAACAGG-ATA-TTCTATTCAAAATA-GA-A----GGAAATTGGCCAG-----AAATATT-TTCTCTCGATATAAGATATGA-ATCTCTT-GTTACCCGAGCT-GTAATATTCTGAAGCCCA-TGTA
gi|5 : tataatTACAGATGACTCCGGGTGTA-ACAAGGTG----GATGGGAAACA--AAAAATATCTCGTTATA-CCGTC-TTCGTTGTT-ATTC--CATCA------------T-CACAAT--TTTTGGCTTCCAA-AAAAAT----------------AC-----GTGAAGCCATT-GT---TG---A--ATGTGAAG----ACCGT--TGG----TG-TGAAGTTACCT----GAGGACT-ATAAACACAAATC----ATT--T-TGC--AATTTTAAAG---T----AATTAAAT-AAACTATTGTTCGGAATGTTAGGAGACA--CCCGTG---T--CGCACCG----A-T--A-C-----ATA------CCTGTA--TGATCAACCAT-GTAAGCGAGCACACCTCGTTATATCCGAGGACGC--TTT-----TTGTAGAAGGAA-TTGAAATATTAC-----C-TCTTTGTAAG--CGAAA-TCT-CGCTGTAACTGATCTC----GT-TACAGGAATATATCTACTAGAAATATGA-A----GGAAATTGGCTGGGACACAAT-TTT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATACTCGA
gi|6 : a--AAGTGAAG----AC-AA--TGGGATATGATGAAGTTCCACCCAAGAGAACTTATGAA--CAACTCTACAAATGGTGTGCTCGATTTT-AAGAGTT---TAATTAAATCGAACCTTT--------TGTTAGTAGACAGACCTGTG---TTGCGTATCG--TTAGCCTA-CTCTGCATCAAGTATCCTGTGTTC-ATCAACCATTGAA-GTGAGCATGCCTCGTTATATCCTAGGACGTAGTTTTGGGCTTATAGAAGGGGATCTAAATATTTC-----CATCTTTG-GAGCCCCAAA-CCC-CATAGTA----------------AACAGGAATA-TTCTAATAatcc
gi|7 : -TGTTAGGAGACA--CCTGTG---T--CAAACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGAG--CAATCAACCAT-GTA-GCGAGCACGCCTTGTTATATCCGAGGACGC--TTT-----CGGTAGAAGGGG-TTTAGATATTAC-----C-TCGTTGTAAG--TGAAA-TCT-CGCTGTAATCAATCTCAT-TGT-AACAGGAATATTTCTAATAGAAATATAA-A----GGTAACTGGCTGGGACACAAA-A-C-TT-TCTCGTTAT---ATGCGGTATCTCGC-TATATCCGAGCTTGTTATA-CCCAAAGCCCACTGT
gi|8 : gCAGTTGACTCAGGGTATA-ACGAGGTG----GATAGGGAACG--AAAAATATCTCGTTATAATCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-TATAAT--CCC---CCCCCAA-GAAAATCGTGTT-TCTT---TTAT-----GTGAAGCCTTT-GT---TA---A--AAGTGAAT----AC-GG--TGG----TG-TGAAGTAACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--CATTTTGAAG-------TGATTAAAT-GATCTATT
gi|9 : AGCACACCTTGTTATATTCAAGGACGA--TTT-----CTATAGAAAGGG-TTAAAATATTAC-----C-TCAATGTAAG--GGAAA-TCT-CGATGTAACCGATCTC-GATGT-AACAGGGATGTATTTAATATAAATATAA-T----GGAAATTGGCCGGGACACAAC-ATT-TT-TCTCGTTAT---ATGCGGTATATCGT-TATATCCGAACTCGTTATT-CCCGAAGCCCAC
blockSeqs : T CATG CTCT TA G C C TATTTTC A T CGTGTT TTGCGTGAA T AAA CAT AC GTCT C GA GATA A CCAA A T C TACA GG G TC T TATG C TGTTCGGAAT GA TTTT AT G G T C C AT TT T A C AGT TGGGC A T ATGTACA G CC T C T GTT A T C TTTT ATA A C AAG A T C
blockSeqs : . . TG A G C . TTTTGG C . CGC CTTTTGC . . . . . . . . . . A . A . . . . A AGTT . GGTTAAGA . TTG . . . . . A . . . . T T . . T CA T . . . C ATT . T . . AG . . . . . C
blockSeqs : . . TG A G C . TTTTG A . CGC GTTTGC . . . . . . . . . . T . A . . . . T T . TGTA . A . . . . . A . . . . C C . . T C G . . . C GTT . T . . CA . . . . . C
blockSeqs : . . TG A G C . TTTTG A . TTT CTATA . . . . . . . . . . T . A . . . . T T . GT . T . . . . . A . . . . T T . . G C T . . . C ATT . T . . GT . . . . . C
blockSeqs : . . TG A G C . TTTT C . CAA TTGC . . . . . . . . . . A . A . . . . T T . TT . C . . . . . C . . . . C T . . T C T . . . T GAT . T . . AT . . . . . C
blockSeqs : . . CA . . . . CCC A . GT TTAT . . . . . . . . . . A . C . . . . T T . T . T . . . . . A . . . . C T . . T C G . . . C . . T . . TT . . . . . .
blockSeqs : . . CG . . . . T A . T AC . . . . . . . . . . A . A . . . . A T . . T . . . . . . . . . . . T . . A C A . . . . . . . . . AA . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . A . . . . . . G . . . . . . . . . . . . . . . . . CA . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . .
blockSeqs : . . . . .
blockSeqCons : A** CGT**** TGTA****** GTT*
originalCons : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCG---C-TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTTAGGA-TGTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTC-T-TGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
finalCons : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGTA--TCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAATCGT----TTTT---TTGC-----GTGAAGCCATT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGTA------GTTAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAG--CGAAA-TCT-CGCTGTAACCGATCTCGTT-GT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Alignments
lowQualScore : 111 11111111 222222222 1111 11111 1111111 444444444 111111 11111 1111111
lowQualScore : 4 7777 6666 0 222 1 2 0 5 33333333 1 4 444444444 4444 4 0 11111 4 777 777 55 8888 4 55 8888 4 8888 1 4 3 8888 55 4 55 5 2222222 4 222222222 66 66 111111 66 5 5 5 5 6 66 0 66 0 5 5 2 0 0 777 11111 4 2 2222222 2 4 4 0 0 0 2 4 1 4 9999 666 3 3 666 3 4 2
lowQualScore : . .... .... . ... . . . . ........ . . ......... .... . . ..... . ... ... .. .... . .. .... . .... . . . .... .. . .. . ....... . ......... .. .. ...... .. . . . . . .. . .. . . . . . . ... ..... . . ....... . . . . . . . . . . .... ... . . ... . . .
lowQualScore : 0 7777 9999 4 000 4 5 1 0 11111111 8 4 333333333 7777 4 1 11111 4 888 888 55 5555 0 55 5555 0 5555 1 0 1 5555 55 0 55 0 0000000 4 111111111 99 99 888888 99 0 0 0 0 1 99 4 99 2 0 0 2 2 2 111 11111 4 1 8888888 9 4 4 1 9 9 0 4 9 4 4444 666 6 6 444 6 0 5
consensus : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAAT--CG---T-TTTT---TTGC-GTGAAGCCA-----TT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGT-----A-GT--TAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAGCGAAA-TCT-CGCTGTAACCGATCTCGTTGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
Reference ( family-729 ) : TACAGTTGACTCCGGGTATA-ACGAGGTG----GATGGGGAACG--AAAAATATCTCGTTATAACCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTCCAA-TGAAAT--CG---T-TTTT---TTGC-GTGAAGCCA-----TT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--GATTTTTAAG---T---TAATTAAAT-GAACTTTTGT-----A-GT--TAGGAGACA--CCTGTG---T--CGTACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGTG--CGATCAACCAT-GTA-GCGAGCACGCCTCGTTATATCCGAGGACGC--TTT-----CTGTAGAAGGGG-TTTAAATATTAC-----C-TCGTTGTAAGCGAAA-TCT-CGCTGTAACCGATCTCGTTGT-AACAGGAATATTTCTAATAGAAATATGA-A----GGAAATTGGCCGGGACACAAA-ATT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATATCCGAGCTCGTTATA-CCCGAAGCCCACTGTA
gi|1 : TACAGTGGACTC-GGGTATA-ACGAGGTG----GATGGGGAATG--AAAAATATCTCGTCATAACCGTCATTCGTTGTGAATCCATCATCACAATTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TGAAAT--CG---CATTTT---TTGC-ATGAAGCCA-----TT-GT---TG---A--AAGTGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-ATGAAAACAACTC----AAT--T-TGT--GATTTTCAAA---T---TAATTAAAT-AAACTTTTGTTAGG-A-GTGTTAGGAGACA--CCTGTG---T--CGTACCA--TTA-TCTA-C-TTG-ATCAAGT--CCAGTG--CGATCAACCAT-GTA-GCAAGCATGCCTCATTCTATTCGAGGACAC--ATT-----TTGTAGAAGGGG-TTAAAATATTAC-----C-TCGTTGTAAGCGAAA-TCT-CGCTGTAACTGATCTC---GT-AACAGGAATATTTCTAATAGCAAAATGA-A----AGAAATTGGCCAGGACACAAA-ATT-TG-TCTTTTTAT---ATGCGGTATCTCAT-TATATCTGAGGTTGTTATA-CCCGAAGCTCACTGTA
gi|10 : ACAGTTGACTCCGGGTATA-ACGAGGTGCATGGATGGGGAATG--AAAAATATCTTGTTATAACCGACATTCGTTGT--ATCTGTCATCACAATTTT----------------------TTCCAA-TGAAAT--CG---C-TTTT---TTGC-GTGAAGACA-----TT-GT---TG---A--AAATGAAG----AC-AT--TGG----TG-TGAAGTTGCAT----GAGGACT-AT-------ACTC----AGT--T-TGC--GAGTTTTAA
gi|11 : GAAAT--CG---C-TTTTGT-TTGC-ATGTA--CA-----TTTGTAAATGCATG--AAGTGAAG----AC-AA--TGG----TG-TGAAGTTCCAC----GAGAACT-ATGAACACACTTC----AAT--T-TGC--GATTTTAAAG---T---TAATTAAAT-GACCTTTT---------GT--TAGGAGACA--CCTGTG---A--CGTATCG--TTA-CCTA-C-CTG-ATCAAGT--CCTGTT--CAATCAACCAT-GAA-Ga
gi|12 : C--TTC-----CTGTAGGAGGGT-TTTAAATATTAC-----C-TCGTTGTAAGCGAAA-TCT-TGCTGTAATCAATCTCGTTGT-AACAGGAATATTTTTAATAGAAATATAA-A----GGAAATTGGCTGGGACACAGA-GTT-TT-TGTCGTTAT---ATGCAGTATTTCGT-TATATCTGAGCTCGTTATA-CCCGAAGCCC
gi|13 : aAAT--TTTTG-TTTCC--------T-------T-TCTT---TTGC-GTGAAGTGAAGTAATT-GT---TG---A--AAATGAAG----AC-AT--TAG----TG-TAAAGTTACAT----GTGGACT-ATGAAAACAACTC-----AT--T-TGC--GATCTTTAAG---T---TAATCAAAT-GAACTTTTG
gi|14 : GTG----GATGGGGAATG--AAAAATACCTCGTTATAATCGTCATCCGTTGT--ATCTGTCATCACAATTTTGAAATT-TACAATTATTTTC-TTTCCCATTGAAATGATG---T-TTctaagt
gi|15 : GAAATATAA-A----GGAAATTGGCTGGGACA-----ATT-TT----CGTTAT---ATGCGGTATTTCGT-TATATCCGAGCTCGTTAAA-CCAAAAGCCCACTG
gi|16 : TT-TT-TCTCGTTAA---ATACGGTATCTCGT-TATTTCCGAGCTCATTACA-CCTGAAGCCCA-TGTA
gi|17 : ggtcagactattCACAAC-ATT-TT-TCTCATTAT---ATGCGGTATTTCGTATA-ATCCGAGCTCGTTATA-CCCAAAATCCACTGTA
gi|18 : AGTTGACTCCGGGTATA-ATGAGGTG----GATGGGGAATG--AAAAATA
gi|19 : TACAGTTGACTCCGGATATA-ACGAGGTG----AATGGGGA
gi|2 : gGGTATA-AAGAGGTG----GATGGAGAATG--AAAATTATCTCATTATAACCGCCATTCATTGA--ATCCGTCATTACAATTTTGAAATT-CACAAT--TTTT----CCCAA-TGAAAT--TT---T-TTTTCTTTTGC-GTGAAGCTA-----TT-AT---TG---A--AAGTGAAGGTCTAC-AT--TGG----TG-TGAAGATACAC----GTGGACT-ATGAAAACAACTC----AAT--T-TGT--GGTTTTTTAG---T---AAATTTAAT-GAACTTTTGT-----A------AGGAGAAA--CCTGTG---T--CGTACCA--TTG-TGTA-C-CTG-ATAAAGT--CCTGTG--CGATTAACCAT-GTA-GCAAGCACGCCTCGTTATATCCGAGGACGC--CTT-----CTGTTGAAGGGG-TTTAAATATCAC-----C-TCTTTGTAAGTGAAA-TCT-CGTTGTAACTGATCTCATTGT-AATAGGAATATTTCTAATAAAAATATGA-A----GGAAATTGGCCAGGACACAAG-TTT-GT-TCTCGTTAT---ATGCGGTATCTCGT-TGTATCCGAGCTCGTTATA-CCCGAAGCTCA
gi|20 : TACAGTTGACTCCGGGTATA-ACGAGGTG----G
gi|3 : aTACAGTTGACTCCGGGTATA-ACGAGGTG----GAGGGGGAG-A--AAAAACTTCTCGTTATATCCGTCATT---------------ATCA---TTTTGAAATT-CACAAT--TTTTG-TTTTCAA-TTAAAT--CA---A-TTTT--------------CCT-----TT-CT---TG---A--AAATGAAA----AT-AT--TGG----TA-TGAAGTTACAC----GAAAACT-GTGAAAATAACTG----AAT--T-TGT--GATTTTTAAG---T---TAATTAAAT-GAAC--TTGT-------GT--TAGGAGACA--TCTCTG---C--CGTACCG--CTA-TCCA-G-CTA-ATAAAGT--TCTGTG--CGGTCAACCAT-GTA-GCGAGTATGCCTCGTTATAT-CGAGGGCTC--TTT-----CTGTAGAAGGGA-TATAAACATTACATGTACATCGTTGTAAGCGAAA-TCT-CGCTGTAACCGATCTCGTTGT-AACAGGAATATTTCTAATAGAAATATTACATTTTAGAAATAGGTCGGGACATAAA-TTTATT-TCTCCTTAT---ATGC-GTATCTCGT-TATATTCAAGCTTGTTATA-CCCGAATACCACCG
gi|4 : GTTGACTCCGG-TATATGCGTGGTG----GATTGACTACTCTAAAATTATC-CGTTATAACGAGCATTTGTTGT---TGTGTCATAACAA-ATTGAAATTCCAAAAT--T-----TCCCCCA-TGAAAT---G---T-TTTT---CTATAGATAAGT-------TT-GT---TG---AACAAGTGAAG----GC-ATGATGG----TG-T--AATTACAT----G-GGACT-ATAAAAA-A--TT----ACT--T-TGT--AATTTTT-CG---TATGTAATTGAA---AAGTT---T-----G-GT--TAAGA-AGA--CCTGTGTTTT--TGTACGGATTTA-TCTAGC-CAG-AT-AAGT--CGTG-G--CGTTCAA-AAT-AT--GTTAACA-GACT--TTTCATCCAAGGATTC---TT-----CTGTA-AAG---------ATA--------------TTGTAAGCAAAATTCTCCGCTGTAA-CAATCTCGT--A-AACAGG-ATA-TTCTATTCAAAATA-GA-A----GGAAATTGGCCAG-----AAATATT-TTCTCTCGATATAAGATATGA-ATCTCTT-GTTACCCGAGCT-GTAATATTCTGAAGCCCA-TGTA
gi|5 : tataatTACAGATGACTCCGGGTGTA-ACAAGGTG----GATGGGAAACA--AAAAATATCTCGTTATA-CCGTC-TTCGTTGTT-ATTC--CATCA------------T-CACAAT--TTTTGGCTTCCAA-AAAAAT------------------AC-GTGAAGCCA-----TT-GT---TG---A--ATGTGAAG----ACCGT--TGG----TG-TGAAGTTACCT----GAGGACT-ATAAACACAAATC----ATT--T-TGC--AATTTTAAAG---T----AATTAAAT-AAACTATTGTTCGGAATGT--TAGGAGACA--CCCGTG---T--CGCACCG----A-T--A-C-----ATA------CCTGTA--TGATCAACCAT-GTAAGCGAGCACACCTCGTTATATCCGAGGACGC--TTT-----TTGTAGAAGGAA-TTGAAATATTAC-----C-TCTTTGTAAGCGAAA-TCT-CGCTGTAACTGATCTCGTT----ACAGGAATATATCTACTAGAAATATGA-A----GGAAATTGGCTGGGACACAAT-TTT-TT-TCTCGTTAT---ATGCGGTATCTCGT-TATACTCGA
gi|6 : a--AAGTGAAG----AC-AA--TGGGATATGATGAAGTTCCACCCAAGAGAACTTATGAA--CAACTCTACAAATGGTGTGCTCGATTTT-AAGAGTT---TAATTAAATCGAACCTTT-T-------GT--TAGTAGACAGACCTGTG---TTGCGTATCG--TTAGCCTA-CTCTGCATCAAGTATCCTGTGTTC-ATCAACCATTGAA-GTGAGCATGCCTCGTTATATCCTAGGACGTAGTTTTGGGCTTATAGAAGGGGATCTAAATATTTC-----CATCTTTG-GAGC------CC-CA----AAC----CCCATAGTAAACAGGAATA-TTCTAATAatcc
gi|7 : -GT--TAGGAGACA--CCTGTG---T--CAAACCG--TTA-TCTA-C-CTG-ATAAAGT--CCTGAG--CAATCAACCAT-GTA-GCGAGCACGCCTTGTTATATCCGAGGACGC--TTT-----CGGTAGAAGGGG-TTTAGATATTAC-----C-TCGTTGTAAGTGAAA-TCT-CGCTGTAATCAATCTCATTGT-AACAGGAATATTTCTAATAGAAATATAA-A----GGTAACTGGCTGGGACACAAA-A-C-TT-TCTCGTTAT---ATGCGGTATCTCGC-TATATCCGAGCTTGTTATA-CCCAAAGCCCACTGT
gi|8 : gtCAGTTGACTCAGGGTATA-ACGAGGTG----GATAGGGAACG--AAAAATATCTCGTTATAATCGTCATTCGTTGT--ATCCGTCATCACAATTTTGAAATT-TATAAT--CCC---CCCCCAA-GAAAAT--CGTGTT-TCTT---TTAT-GTGAAGCCT-----TT-GT---TA---A--AAGTGAAT----AC-GG--TGG----TG-TGAAGTAACAC----GAGGACT-ATGAAAACAACTC----AAT--T-TGC--CATTTTGAAG-------TGATTAAAT-GATCTATT
gi|9 : AGCACACCTTGTTATATTCAAGGACGA--TTT-----CTATAGAAAGGG-TTAAAATATTAC-----C-TCAATGTAAGGGAAA-TCT-CGATGTAACCGATCTCGATGT-AACAGGGATGTATTTAATATAAATATAA-T----GGAAATTGGCCGGGACACAAC-ATT-TT-TCTCGTTAT---ATGCGGTATATCGT-TATATCCGAACTCGTTATT-CCCGAAGCCCAC