lowQualScore : 44444444444444 11 1 11 77777777777777777777 1111 1111111 1 111 11111 1 11 1111 11 222222 1 111 1 222 5555555555555 2 1111 3333333333 1111 11 6666666 11 111 222 2222 1 11 1 1 2
lowQualScore : 4 11111111111111 6 33 2 8 0 9 8 8 88 8 44444444444444444444 88 6 3 5 8888 99 1 5555555 1 3 5 88 6 2 333 77 888 3 6 5 8 1 44444 2 0 11 7777 999 88 0 2 888888 3 777 3 6 0 999 0000000000000 3 6666 3 6666666666 4 4444 66 6 5555555 88 88 777 7 333 8888 7 4 4 6 3 44 6 3 2 0 2 4
lowQualScore : . .............. . .. . . . . . . .. . .................... .. . . . .... .. . ....... . . . .. . . ... .. ... . . . . . ..... . . .. .... ... .. . . ...... . ... . . . ... ............. . .... . .......... . .... .. . ....... .. .. ... . ... .... . . . . . .. . . . . . .
lowQualScore : 0 00000000000000 5 88 2 0 0 2 0 0 22 0 00000000000000000000 22 7 2 2 8888 22 0 3333333 3 7 0 33 7 9 444 11 000 2 7 2 8 2 00000 5 0 00 0000 666 22 8 5 333333 3 777 3 7 7 000 0000000000000 7 2222 2 8888888888 2 8888 55 5 0000000 00 33 777 3 333 3333 3 7 0 7 3 00 7 3 3 0 5 0
consensus : NAGTAGTATAGNGCG-GGATTCATATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAA-TTTGCACATTTGGT-CGAGA-GGT-AAG--CAA--GG-GGC-GGTNC-TAAGGGAAT-GAAC-CAATCANAAA-TCAGGAAG-TGACAAAACGGAC-CGATCAGAATTTAGAGGGAATGATAGATTGTCAGG-TTTAAAGAAATATC--ACGTG-ATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTNTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCACCA-TCTT-TTGAACGAC-T-AAT-CCTATTATCG--ACACGG-----CTGTACA-GTGTA-TGAGCTNT--CGCAATCAATTAG-GGGCGAATAAATA-T--GTAN-ANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTTAACGTTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGANTNACAAAG-AAATGTAAAGCTA-TTGTGACTNTACANGTGTAA
Reference ( gi|2 ) : TAGTAGTATAGTGTGTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAA-TTTGCACATTTGGT-CGAGA-TGT-AAG--CAATTGG-GGC-AGTAC-TAAGGGAAT-GAAC-CAATCAGAAG-CTAGGAAG-TGACAAACCGGAC-CAATCAGAATTTAGAGGGAATGATGGATGGTCAGA-TTGAAAGAAATATT--ACGTG-GTGAAAGGGGTACCCGAGAGGACA-GTATCA-AATTATTCTAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AAT-CCTCTCATCAACACACGG-----CTGTACGAGTGTATTGAGCTTT--CGTAATCAACCAG-TGACGAATAGATA-T--GTAG-ACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAAGCATGAACATATATGTTAG
gi|1 : AGTAGTATAGAGCG---ATTCA-ATAT---CATCCTGGGG-TAAGGTTTGCACGGTAAAA-TTTGCACATTTGGT-CGAGA-GGT-ATGA-CAA-GGG-GGT-GGTCC-TAAAGGAAG-GAAC-CCATCAAAAA-TCAGGAAG-GAACAAAACGGAC-CACTCAGAATTGAGAGGGAATGATAAAGTGTCAGG-TTGAAAGAAATATC--ACGTG-ATAAAAGAGGTACCCTAGAGGATT-GTATCA-AACTATTATAATTATAAATTTCCTCTTACATATTGGAGCCCCTCCACA-GAGTA--CGAATCGAAGCACGCC------GAAAATC------CTT-TAGACCGACTT-AAT-CCTATTATCG--ACACGG-----CTGTACAAGTGTA-TGAGCAAC--CGTAATCAA---------------ATA-T--GTAC-AATAAAGTGATATTGTTAA-------TTTTGGTGTATTTTAACGCTTGA--TAG-A-GATAGATGG-AA---AATGTC----AGATAATGAATGACAAAGTAAAT-TAAAACCACTTGTGACTGTACAAGTGTAA
gi|4 : GTAGTATAGTGTGTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTTTGCACATTTGGTCCGAGATTGTAAAG--C-ATTGACGGCGAGTAC-TAAGG--ATAGAAC-C-ATCAGAAGCCTAGGAAGTTGACAAACCGGACTCAATCAGAA-TTAGAGGGAATGATGGATGGTCAGATTTGAAAGAAATATT--ACGTG-GTGAAA-GGGTACCCGAGAGGACACGTATCATAATTAT--TAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----G-A-CACGT-GTATCA-GAAGT-ATCATTCTTATTGAACAAC-T-AATCCCTCTCAACGAAACACGACGTGTCTGTAC--GTGTATTGAGCTTT--CGT-ATCAACCAGTTGAC-AATAGATACT--GTAG-ACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTC-ACATTTGGACTAGTATGAAAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TT-TAA-TCTACATGTATAcctaggtacttgaaccaaagcatttgtgtacatacattacgaacatgaatcggaaattgagaggaaaaacatggttgttacataacccctcaaacaattgattatctctacacggaagtataagacggtttgtcgtacttatgagacaattccaactgtaatggaattaaggtgaataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatcaaaactttcaaacattattttttatctaaaatttacacattacatgattactattaacgatgaaaagttctccaccaaatactgtctgtaacattatttaagtattttaagaagactcatatactgtatatgcagaaatataattaaactatgtgattattaaaaatttatatagcggtataagcaatcgataaagttttatttacataaatatgcaatgttaatcgtaattaagtggtacattattcatactgatgtatttctaaatttgataaagaaagataactctcaactacagagaaaatccttaatatgtgaatagtaaaccagtatgaatgtgtcagctgagtcattagtcctacaagcggacattatcaaaattaacgagatcaaagttggtgatgataccaacgcaatttgtactattaatgtgaaatttacaggtataactaatgaattttatttgtgcactatttaaaaacc
gi|6 : GTAGTGTAGTGTTAGGGTTT-TG---GCGCGCCT--GGT-TAAGGTTTGCTCCTTAAAA-TTTGCTAATTCGGT-AGAGA-GGT-AAGT-CAA-------------------GGAGC-GAACATAAT----------GGAA--TGA--------AT-CGATCAGAATTTAGAGCGAATGATAGATTGCCAGG-TTTAGAAAAAGATC--ATGTG-ATG-AAGGGGTACCTGAGAAGATA-
gi|14 : GTAGTATAGAGCG---ATTCA-ATAT-CGT-CCT--GGGCTAAGGTTTGCACACTAGAA-TTTGCACATTGGGT-CGAGA-GGC-AAG--C
gi|8 : t-TAAGGTTTGCATGTTAAGA-TTTGCACATCTGGT-TGATA-GGT-AAAGCCAA--AG-GTC-GG-ACGTAAAGGAAT-GAAC-CAATCATAAA-TCAGGAGG-TGACGAA----AC-TGTTC--TATATAGAGGGAATGATAGATTGTCAGG-TTTAAATAAc
gi|7 : tttataatccacagtGG-GGT-GGCTC-TAAGGGAAG-GAAC-CAATCATAAA-TCAGGAAT-GGATAAAACGG----AATCAGAATTGAGAGGGAATGATAG-T-GTCAGG-GTTAAAGAAATATC--ACG
gi|9 : tagtagtatatagcgatccaatttgatccatgggtaaggttttgctcaggtatgctaaaAAGGGAGT-AAAC-CAATCAGAAA-TTAGAAAG-TTACAAAACAGAC-CAATCAGAATTTA-AGGGAATGATAGATTGTCAGG-TTTA--GACATTTTTCACAAG-ATGAGAGGGGTACCCGAGAGGATA-GTATTA-AATTATTCTAATT
gi|13 : TCAGAATTGAGAGGGAATGATAGAGTGTCATT-TTGAAAGAAATATC--ACGTG-ATAAAGGGGGGACCCAACAGGAGA-GGATCA-AATTATTCTAATTAAA
gi|11 : CAGG-TTTCAA-AAATAT----CGTGTATGAAAGAG-TACCCGGG--GAAA-G---CT-GGTCCTTT--ATCAAAAATATTCCCT-----ATTGGAGTCC-TCTGCACGAGTG--TG----GA--CACGT-GTATCAGGAAATaa
gi|12 : GA-TTCAAACAAATATC--ACGTG-GTGAAAGGGATACCCGAGAGGAGA-GTATCA-AATTATTGTGATTAAAAATGTCCCCTTGC--ATTGAGGCTCCTCCGCG-AAGTT--TG----GAA-CACGCCGgtctt
gi|5 : AGTAGTTG----GAA-CACGTTTTGTCAGAAAGTCACTAATCCT-TTGGACAAC-TTAAT-CCTATTATCATTACACAG---------ACA--TGTA---AGCTCTATCACAATCAATTAG-GGGCAAATAAATA-TATGTAATATTAAAGTGATATTGTTAACTCATTATTTTGGTGTAATTTAAAATTTGA--TAG-A-GATAACTTGAGAATGAATGACAAGGAGA-AATGGCTCGCAATG-GAA-GAGAAG-TA-TTATa
gi|15 : cgtaCTAT--CACAATCAATTAG-GGGCGAATAAATA-T--GTAT-AATAAAGTGATATTGATAACTCATTCTTTTGGTGTA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TATCAAGATTAGCAAAATTACATGTCAATAATTACTATTAAATGATGAAGGTTATTCAACCAAATACATCTACTGTCCTGTAACATATCATTGCAACTCTTTGTATTCTAAAAGACATTAATAATGCAACTATATATTGGCAGATTATTATGTTATCTTTAGACGATCTCATATGCGATTATATTCAAATAATTATATAAGTAATCGATAAATAATTGTTTCCATAAAATACACGATTTTAAATCTAATTGGTATATTACCTACCTAATGGTGATTTATTGGGAAATAATTGATAAAGGGAAGGAGTAATACTAACATCAACTATACAGAGAAAAGAAGCATTATAAATGAATAAAATAATGGATAGTTAAATATCCAGGTATATGAACATCTGTCCAGCCGAGTCAGTTTTCCGTTTTTTTTTGTCTAACACAAAAAAAAAGCTGGAATAAAATTAACGAGATCTAAAGTCGGTGATGATATCCAATAAAATTTGTGGAATATCTATTATGTG
Unaligned ( gi|10 ): AAGTGATTGCTATTAAAAATTTATATACATATATGTATAAATAATCAATAAAGTTTTATTTGTAAACATAACTATCCACGATGTTCATCGTAAACATACTGGTGTATTTCAAAATTT
Unaligned ( gi|16 ): CAGTATAGAGCGATTCAATATCGCCCTGGG
Alignments
lowQualScore : 333 2 11 11 1111 11 333333 1 111 1 44 222222 222 2 111 6666666 11 111 111 2222 1 1 1 2
lowQualScore : 1 99 000 3 3 6 9 99 5 3 5 1 5 5 5 99 77 99 99 9999 55 0 77 3 77 0 5 1 77 6 6 4 4 4 1 5 1 5 88 0 11 8 99 4444 7 6 11 777777 0 2 111 0 3 11 777777 555 0 1 0 0 33 66666 8 444 1 1 2222222 3 2 33 111 3 777 1111 3 1 1 3 0 55 2 0 0 0 3 1 1 0
lowQualScore : . .. ... . . . . .. . . . . . . . .. .. .. .. .... .. . .. . .. . . . .. . . . . . . . . . .. . .. . .. .... . . .. ...... . . ... . . .. ...... ... . . . . .. ..... . ... . . ....... . . .. ... . ... .... . . . . . .. . . . . . . . .
lowQualScore : 0 22 888 7 7 7 3 22 7 0 7 7 7 7 7 33 99 22 22 7777 22 7 00 0 44 7 7 3 44 3 1 0 1 5 0 0 4 7 00 8 00 0 22 2222 3 7 88 222222 0 0 000 0 0 22 555555 888 0 0 8 8 66 44444 0 000 0 0 6666666 2 0 88 000 2 555 2222 2 0 0 0 0 88 5 0 5 7 3 0 0 7
consensus : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AAT-CCTNTCATCGANACACGG-----CTGTACGAGTGTATTGAGCTATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
Reference ( family-7190 ) : NAGTAGTATAGNGC--G-GGATTCATATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCANAAATC-AGGAAGT-GACAAAACGGAC-CGATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTNTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCACCA-TCTT-TTGAACGAC-T-AAT-CCTATTATCG--ACACGG-----CTGTAC-AGTGTA-TGAGCTNTCGCAATCAATTAGGGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTTAACGTTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGANTNACAAAG-AAATGTAAAGCTA-TTGTGACTNTACANGTGTAA
gi|1 : AGTAGTATAGAGC--G---ATTCA-ATAT---CATCCTGGGG-TAAGGTTTGCACGGTAAAATTT-GCACATTTGGTC-GAGAG-GTAT-GA-C--AA--GG--GGGTG-GTCCTAAAGGAAG-GAACCCATCAAAAATC-AGGAAGG-AACAAAACGGAC-CACTCAGAATTGAGAGGGAATGATAAAGTGTCAGGTTG-AAAGAAATATCACGTGATAAAAGAGGTACCCTAGAGGATT-GTATCA-AACTATTATAATTATAAATTTCCTCTTACATATTGGAGCCCCTCCACA-GAGTA--CGAATCGAAGCACGCC------GAAAATC------CTT-TAGACCGACTT-AAT-CCTATTATCG--ACACGG-----CTGTACAAGTGTA-TGAGCAACCGTAATC--------------AAATA-TGT---ACAATAAAGTGATATTGTTAA-------TTTTGGTGTATTTTAACGCTTGA--TAG-A-GATAGATGG-AA---AATGTC----AGATAATGAATGACAAAGTAAAT-TAAAACCACTTGTGACTGTACAAGTGTAA
gi|11 : CAGGTTT-CAA-AAATATCGTGT-ATGAAAGAG-TACCCGGG--GAAA-G---CT-GGTCCTTT--ATCAAAAATATTCCCT-----ATTGGAG-TCCTCTGCACGAGTG--TG----G-A-CACGT-GTATCAGGAAATcctaggtacttgaaccaaagcatttgtgtacatacattacgaacatgaatcggaaattgagaggaaaaacatggttgttacataacccctcaaacaattgattatctctacacggaagtataagacggtttgtcgtacttatgagacaattccaactgtaatggaattaaggtgaataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatcaaaactttcaaacattattttttatctaaaatttacacattacatgattactattaacgatgaaaagttctccaccaaatactgtctgtaacattatttaagtattttaagaagactcatatactgtatatgcagaaatataattaaactatgtgattattaaaaatttatatagcggtataagcaatcgataaagttttatttacataaatatgcaatgttaatcgtaattaagtggtacattattcatactgatgtatttctaaatttgataaagaaagataactctcaactacagagaaaatccttaatatgtgaatagtaaaccagtatgaatgtgtcagctgagtcattagtcctacaagcggacattatcaaaattaacgagatcaaagttggtgatgataccaacgcaatttgtactattaatgtgaaatttacaggtataactaatgaattttatttgtgcactatttaaaaacc
gi|12 : GATTC-AAACAAATATCACGTGGTGAAAGGGATACCCGAGAGGAGA-GTATCA-AATTATTGTGATTAAAAATGTCCCCTTGC--ATTGAGGCTCCTCCGCG-AAGTT--TG----GAA-CACGCCGgtctt
gi|13 : TCAGAATTGAGAGGGAATGATAGAGTGTCATTTTG-AAAGAAATATCACGTGATAAAGGGGGGACCCAACAGGAGA-GGATCA-AATTATTCTAATTAAAAAa
gi|14 : GTAGTATAGAGC--G---ATTCA-ATAT-CGT-CCT--GGGCTAAGGTTTGCACACTAGAATTT-GCACATTGGGTC-GAGAG-GCAA-G--C--
gi|15 : tCTATCACAATCAATTAGGGGCGAATAAATA-TGT---ATAATAAAGTGATATTGATAACTCATTCTTTTGGTGTAc
gi|2 : AGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTT-GCACATTTGGTC-GAGAT-GTAA-G--C--AATTGG--GG-CA-GTACTAAGGGAAT-GAACCAATCAGAAGCT-AGGAAGT-GACAAACCGGAC-CAATCAGAATTTAGAGGGAATGATGGATGGTCAGATTG-AAAGAAATATTACGTGGTGAAAGGGGTACCCGAGAGGACA-GTATCA-AATTATTCTAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AAT-CCTCTCATCAACACACGG-----CTGTACGAGTGTATTGAGCTTTCGTAATCAACCAGTGACGAATAGATA-TGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|4 : tGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTTTGCACATTTGGTCCGAGATTGTAAAG--C--AT--TGACGG-CGAGTACTAAGG--ATAGAACCA-TCAGAAGCCTAGGAAGTTGACAAACCGGACTCAATCAGAATT-AGAGGGAATGATGGATGGTCAGATTTGAAAGAAATATTACGTGGTGAAAGGG-TACCCGAGAGGACACGTATCATAATTATT--AATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----G-A-CACGT-GTATCA-GAAGT-ATCATTCTTATTGAACAAC-T-AATCCCTCTCAACGAAACACGACGTGTCTGTAC--GTGTATTGAGCTTTCGT-ATCAACCAGTTGACAATAGATACTGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTC-ACATTTGGACTAGTATGAAAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TT-TAA-TCTACATGTATAgcatgaacatatatgttag
gi|5 : AGTAGTTG----GAA-CACGTTTTGTCAGAAAGTCACTAATCCT-TTGGACAAC-TTAAT-CCTATTATCATTACACAG---------AC-A-TGTA-AGCTCTATCACAATCAATTAGGGGCAAATAAATA-TATGTAATATTAAAGTGATATTGTTAACTCATTATTTTGGTGTAATTTAAAATTTGA--TAG-A-GATAACTTGAGAATGAATGACAAGGAGA-AATGGCTCGCAATG-GAA-GAGAAG-TA-TTAT
gi|6 : cgtaGTAGTGTAGTGTTAG-GGTTTTG-----GCGCGCCT--GGT-TAAGGTTTGCTCCTTAAAATTT-GCTAATTCGGTA-GAGAG-GTAA-GT-C--AA--GG--AG-C----------------GAAC--AT----AAT---GGAA-T-GA--------AT-CGATCAGAATTTAGAGCGAATGATAGATTGCCAGGTTT-AGAAAAAGATCATGTGATG-AAGGGGTACCTGAGAAGATA-
gi|7 : AGTAGTATATAGC--G---ATCCA-ATTTGATC-CAT--GGG-TAAGGTTT-------------T-GC--------TC----AG-GTAT-G--CTAAA--GG--GG-TG-GCTCTAAGGGAAG-GAACCAATCATAAATC-AGGAATG-GATAAAACGGA----ATCAGAATTGAGAGGGAATGATAG--TGTCAGGGTT-AAAGAAATATCACG
gi|8 : t-TAAGGTTTGCATGTTAAGATTT-GCACATCTGGTT-GATAG-GTAA-AGCC--AA--AG--GT-CG-GACGTAAAGGAAT-GAACCAATCATAAATC-AGGAGGT-GACGAAACTGTT-CTAT-A-----TAGAGGGAATGATAGATTGTCAGGTTT-AAATAA
gi|9 : tttataatccacagtAAGGGAGT-AAACCAATCAGAAATT-AGAAAGT-TACAAAACAGAC-CAATCAGAATTTA-AGGGAATGATAGATTGTCAGGTTT-AGACATTTTTCACAAGATGAGAGGGGTACCCGAGAGGATA-GTATTA-AATTATTCTAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TATCAAGATTAGCAAAATTACATGTCAATAATTACTATTAAATGATGAAGGTTATTCAACCAAATACATCTACTGTCCTGTAACATATCATTGCAACTCTTTGTATTCTAAAAGACATTAATAATGCAACTATATATTGGCAGATTATTATGTTATCTTTAGACGATCTCATATGCGATTATATTCAAATAATTATATAAGTAATCGATAAATAATTGTTTCCATAAAATACACGATTTTAAATCTAATTGGTATATTACCTACCTAATGGTGATTTATTGGGAAATAATTGATAAAGGGAAGGAGTAATACTAACATCAACTATACAGAGAAAAGAAGCATTATAAATGAATAAAATAATGGATAGTTAAATATCCAGGTATATGAACATCTGTCCAGCCGAGTCAGTTTTCCGTTTTTTTTTGTCTAACACAAAAAAAAAGCTGGAATAAAATTAACGAGATCTAAAGTCGGTGATGATATCCAATAAAATTTGTGGAATATCTATTATGTG
Unaligned ( gi|10 ): AAGTGATTGCTATTAAAAATTTATATACATATATGTATAAATAATCAATAAAGTTTTATTTGTAAACATAACTATCCACGATGTTCATCGTAAACATACTGGTGTATTTCAAAATTT
Unaligned ( gi|16 ): CAGTATAGAGCGATTCAATATCGCCCTGGG
Alignments
lowQualScore : 333 1111111111 11 11 1111 11 1 111 1 11 222222 11 1 111 111 6666666 11 111 111 2222 1 1 1
lowQualScore : 1 77 444 5555555555 77 5 3 5 1 5 5 5 99 77 99 99 9999 55 0 77 3 77 0 5 1 1 5 0 6 4 4 4 1 5 1 5 88 0 11 8 99 4444 6 11 6 777777 0 111 0 1 44 777777 88 5 222 0 0 22 55555 8 444 1 1 2222222 3 33 111 3 777 1111 3 1 0 1 0 55 2 0 7 3
lowQualScore : . .. ... .......... .. . . . . . . . .. .. .. .. .... .. . .. . .. . . . . . . . . . . . . . . .. . .. . .. .... . .. . ...... . ... . . .. ...... .. . ... . . .. ..... . ... . . ....... . .. ... . ... .... . . . . . .. . . . .
lowQualScore : 0 99 333 6666666666 99 0 0 7 7 7 7 7 33 99 22 22 7777 22 7 00 0 44 7 7 3 7 7 1 1 0 1 5 0 0 4 7 00 8 00 0 22 2222 7 88 4 222222 0 000 0 0 22 555555 00 5 444 8 8 88 22222 0 000 0 0 6666666 2 88 000 2 555 2222 2 2 8 0 0 88 5 0 0 3
consensus : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
Reference ( family-7190 ) : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|1 : AGTAGTATAGAGC--G---ATTCA-ATAT---CATCCTGGGG-TAAGGTTTGCACGGTAAAATTT-GCACATTTGGTC-GAGAG-GTAT-GA-C--AA--GG--GGGTG-GTCCTAAAGGAAG-GAACCCATCAAAAATC-AGGAAGG-AACAAAACGGAC-CACTCAGAATTGAGAGGGAATGATAAAGTGTCAGGTTG-AAAGAAATATCACGTGATAAAAGAGGTACCCTAGAGGATT-GTATCA-AACTATTATAATTATAAATTTCCTCTTACATATTGGAGCCCCTCCACA-GAGTA--CGAATCGAAGCACGCC------GAAAATC------CTT-TAGACCGACTT-AATCC-TATTATCG--ACACGGC-----TGTACAAGTGTA-TGAGCA--ACCGTAATC--------------AAATA-TGT---ACAATAAAGTGATATTGTTAA-------TTTTGGTGTATTTTAACGCTTGA--TAG-A-GATAGATGG-AA---AATGTC----AGATAATGAATGACAAAGTAAAT-TAAAACCACTTGTGACTGTACAAGTGTAA
gi|11 : CAGGTTT-CAA-AAATATCGTGT-ATGAAAGAG-TACCCGGG--GAAA-G---CT-GGTCCTTT--ATCAAAAATATTCCCT-----ATTGGAG-TCCTCTGCACGAGTG--TG----G-A-CACGT-GTATCAGGAAATcctaggtacttgaaccaaagcatttgtgtacatacattacgaacatgaatcggaaattgagaggaaaaacatggttgttacataacccctcaaacaattgattatctctacacggaagtataagacggtttgtcgtacttatgagacaattccaactgtaatggaattaaggtgaataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatcaaaactttcaaacattattttttatctaaaatttacacattacatgattactattaacgatgaaaagttctccaccaaatactgtctgtaacattatttaagtattttaagaagactcatatactgtatatgcagaaatataattaaactatgtgattattaaaaatttatatagcggtataagcaatcgataaagttttatttacataaatatgcaatgttaatcgtaattaagtggtacattattcatactgatgtatttctaaatttgataaagaaagataactctcaactacagagaaaatccttaatatgtgaatagtaaaccagtatgaatgtgtcagctgagtcattagtcctacaagcggacattatcaaaattaacgagatcaaagttggtgatgataccaacgcaatttgtactattaatgtgaaatttacaggtataactaatgaattttatttgtgcactatttaaaaacc
gi|12 : GATTC-AAACAAATATCACGTGGTGAAAGGGATACCCGAGAGGAGA-GTATCA-AATTATTGTGATTAAAAATGTCCCCTTGC--ATTGAGGCTCCTCCGCG-AAGTT--TG----GAA-CACGCCGgtctt
gi|13 : TCAGAATTGAGAGGGAATGATAGAGTGTCATTTTG-AAAGAAATATCACGTGATAAAGGGGGGACCCAACAGGAGA-GGATCA-AATTATTCTAATTAAAAAa
gi|14 : GTAGTATAGAGC--G---ATTCA-ATAT-CGT-CCT--GGGCTAAGGTTTGCACACTAGAATTT-GCACATTGGGTC-GAGAG-GCAA-G--C--
gi|15 : tCT--ATCACAATCAATTAGGGGCGAATAAATA-TGT---ATAATAAAGTGATATTGATAACTCATTCTTTTGGTGTAc
gi|16 : AGTATAGAGC--G---ATTCA-ATAT-CGC-CCT--GGG-
gi|2 : cAGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTT-GCACATTTGGTC-GAGAT-GTAA-G--C--AATTGG--GG-CA-GTACTAAGGGAAT-GAACCAATCAGAAGCT-AGGAAGT-GACAAACCGGAC-CAATCAGAATTTAGAGGGAATGATGGATGGTCAGATTG-AAAGAAATATTACGTGGTGAAAGGGGTACCCGAGAGGACA-GTATCA-AATTATTCTAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TCTCATCAACACACGGC-----TGTACGAGTGTATTGAGCT--TTCGTAATCAACCAGTGACGAATAGATA-TGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|4 : tGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTTTGCACATTTGGTCCGAGATTGTAAAG--C--AT--TGACGG-CGAGTACTAAGG--ATAGAACCA-TCAGAAGCCTAGGAAGTTGACAAACCGGACTCAATCAGAATT-AGAGGGAATGATGGATGGTCAGATTTGAAAGAAATATTACGTGGTGAAAGGG-TACCCGAGAGGACACGTATCATAATTATT--AATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GA--CACGT-GTATCAG-AAGT-ATCATTCTTATTGAACAAC-T-AATCCCTCTCAACGAAACACGACGTGTCTGTACG--TGTATTGAGCT--TTCGTA-TCAACCAGTTGACAATAGATACTGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCA-CATTTGGACTAGTATGAAAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TT-TAA-TCTACATGTATAgcatgaacatatatgttag
gi|5 : AGTAGTTG----GAA-CACGTTTTGTCAGAAAGTCACTAATCCT-TTGGACAAC-TTAATCC-TATTATCATTACACAG---------ACA--TGTA---AGCTCTATCACAATCAATTAGGGGCAAATAAATA-TATGTAATATTAAAGTGATATTGTTAACTCATTATTTTGGTGTAATTTAAAATTTGA--TAG-A-GATAACTTGAGAATGAATGACAAGGAGA-AATGGCTCGCAATG-GAA-GAGAAG-TA-TTAT
gi|6 : cgtaGTAGTGTAGTGTTAG-GGTTTTG-----GCGCGCCT--GGT-TAAGGTTTGCTCCTTAAAATTT-GCTAATTCGGTA-GAGAG-GTAA-GT-C--AA--GG--AG-C----------------GAAC--AT----AAT---GGAA-T-GA--------AT-CGATCAGAATTTAGAGCGAATGATAGATTGCCAGGTTT-AGAAAAAGATCATGTGATG-AAGGGGTACCTGAGAAGATA-
gi|7 : AGTAGTATATAGC--G---ATCCA-ATTTGATC-CAT--GGG-TAAGGTTT-------------T-GC--------TC----AG-GTAT-G--CTAAA--GG--GG-TG-GCTCTAAGGGAAG-GAACCAATCATAAATC-AGGAATG-GATAAAACGG----AATCAGAATTGAGAGGGAATGATAG--TGTCAGGGTT-AAAGAAATATCACG
gi|8 : t-TAAGGTTTGCATGTTAAGATTT-GCACATCTGGTT-GATAG-GTAA-AGCC--AA--AG--GT-CG-GACGTAAAGGAAT-GAACCAATCATAAATC-AGGAGGT-GACGAAACTGTT-C--T----ATATAGAGGGAATGATAGATTGTCAGGTTT-AAATAA
gi|9 : tttataatccacagtAAGGGAGT-AAACCAATCAGAAATT-AGAAAGT-TACAAAACAGAC-CAATCAGAATTTA-AGGGAATGATAGATTGTCAGGTTT-AGACATTTTTCACAAGATGAGAGGGGTACCCGAGAGGATA-GTATTA-AATTATTCTAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TATCAAGATTAGCAAAATTACATGTCAATAATTACTATTAAATGATGAAGGTTATTCAACCAAATACATCTACTGTCCTGTAACATATCATTGCAACTCTTTGTATTCTAAAAGACATTAATAATGCAACTATATATTGGCAGATTATTATGTTATCTTTAGACGATCTCATATGCGATTATATTCAAATAATTATATAAGTAATCGATAAATAATTGTTTCCATAAAATACACGATTTTAAATCTAATTGGTATATTACCTACCTAATGGTGATTTATTGGGAAATAATTGATAAAGGGAAGGAGTAATACTAACATCAACTATACAGAGAAAAGAAGCATTATAAATGAATAAAATAATGGATAGTTAAATATCCAGGTATATGAACATCTGTCCAGCCGAGTCAGTTTTCCGTTTTTTTTTGTCTAACACAAAAAAAAAGCTGGAATAAAATTAACGAGATCTAAAGTCGGTGATGATATCCAATAAAATTTGTGGAATATCTATTATGTG
Unaligned ( gi|10 ): AAGTGATTGCTATTAAAAATTTATATACATATATGTATAAATAATCAATAAAGTTTTATTTGTAAACATAACTATCCACGATGTTCATCGTAAACATACTGGTGTATTTCAAAATTT
Alignments
lowQualScore : 333 1111111111 11 11 1111 11 1 111 1 11 222222 11 1 111 111 6666666 11 111 111 2222 1 1 1
lowQualScore : 1 77 444 5555555555 77 5 3 5 1 5 5 5 99 77 99 99 9999 55 0 77 3 77 0 5 1 1 5 0 6 4 4 4 1 5 1 5 88 0 11 8 99 4444 6 11 6 777777 0 111 0 1 44 777777 88 5 222 0 0 22 55555 8 444 1 1 2222222 3 33 111 3 777 1111 3 1 0 1 0 55 2 0 7 3
lowQualScore : . .. ... .......... .. . . . . . . . .. .. .. .. .... .. . .. . .. . . . . . . . . . . . . . . .. . .. . .. .... . .. . ...... . ... . . .. ...... .. . ... . . .. ..... . ... . . ....... . .. ... . ... .... . . . . . .. . . . .
lowQualScore : 0 99 333 6666666666 99 0 0 7 7 7 7 7 33 99 22 22 7777 22 7 00 0 44 7 7 3 7 7 1 1 0 1 5 0 0 4 7 00 8 00 0 22 2222 7 88 4 222222 0 000 0 0 22 555555 00 5 444 8 8 88 22222 0 000 0 0 6666666 2 88 000 2 555 2222 2 2 8 0 0 88 5 0 0 3
consensus : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
Reference ( family-7190 ) : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|1 : AGTAGTATAGAGC--G---ATTCA-ATAT---CATCCTGGGG-TAAGGTTTGCACGGTAAAATTT-GCACATTTGGTC-GAGAG-GTAT-GA-C--AA--GG--GGGTG-GTCCTAAAGGAAG-GAACCCATCAAAAATC-AGGAAGG-AACAAAACGGAC-CACTCAGAATTGAGAGGGAATGATAAAGTGTCAGGTTG-AAAGAAATATCACGTGATAAAAGAGGTACCCTAGAGGATT-GTATCA-AACTATTATAATTATAAATTTCCTCTTACATATTGGAGCCCCTCCACA-GAGTA--CGAATCGAAGCACGCC------GAAAATC------CTT-TAGACCGACTT-AATCC-TATTATCG--ACACGGC-----TGTACAAGTGTA-TGAGCA--ACCGTAATC--------------AAATA-TGT---ACAATAAAGTGATATTGTTAA-------TTTTGGTGTATTTTAACGCTTGA--TAG-A-GATAGATGG-AA---AATGTC----AGATAATGAATGACAAAGTAAAT-TAAAACCACTTGTGACTGTACAAGTGTAA
gi|11 : CAGGTTT-CAA-AAATATCGTGT-ATGAAAGAG-TACCCGGG--GAAA-G---CT-GGTCCTTT--ATCAAAAATATTCCCT-----ATTGGAG-TCCTCTGCACGAGTG--TG----G-A-CACGT-GTATCAGGAAATcctaggtacttgaaccaaagcatttgtgtacatacattacgaacatgaatcggaaattgagaggaaaaacatggttgttacataacccctcaaacaattgattatctctacacggaagtataagacggtttgtcgtacttatgagacaattccaactgtaatggaattaaggtgaataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatcaaaactttcaaacattattttttatctaaaatttacacattacatgattactattaacgatgaaaagttctccaccaaatactgtctgtaacattatttaagtattttaagaagactcatatactgtatatgcagaaatataattaaactatgtgattattaaaaatttatatagcggtataagcaatcgataaagttttatttacataaatatgcaatgttaatcgtaattaagtggtacattattcatactgatgtatttctaaatttgataaagaaagataactctcaactacagagaaaatccttaatatgtgaatagtaaaccagtatgaatgtgtcagctgagtcattagtcctacaagcggacattatcaaaattaacgagatcaaagttggtgatgataccaacgcaatttgtactattaatgtgaaatttacaggtataactaatgaattttatttgtgcactatttaaaaacc
gi|12 : GATTC-AAACAAATATCACGTGGTGAAAGGGATACCCGAGAGGAGA-GTATCA-AATTATTGTGATTAAAAATGTCCCCTTGC--ATTGAGGCTCCTCCGCG-AAGTT--TG----GAA-CACGCCGgtctt
gi|13 : TCAGAATTGAGAGGGAATGATAGAGTGTCATTTTG-AAAGAAATATCACGTGATAAAGGGGGGACCCAACAGGAGA-GGATCA-AATTATTCTAATTAAAAAa
gi|14 : GTAGTATAGAGC--G---ATTCA-ATAT-CGT-CCT--GGGCTAAGGTTTGCACACTAGAATTT-GCACATTGGGTC-GAGAG-GCAA-G--C--
gi|15 : tCT--ATCACAATCAATTAGGGGCGAATAAATA-TGT---ATAATAAAGTGATATTGATAACTCATTCTTTTGGTGTAc
gi|16 : AGTATAGAGC--G---ATTCA-ATAT-CGC-CCT--GGG-
gi|2 : cAGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTT-GCACATTTGGTC-GAGAT-GTAA-G--C--AATTGG--GG-CA-GTACTAAGGGAAT-GAACCAATCAGAAGCT-AGGAAGT-GACAAACCGGAC-CAATCAGAATTTAGAGGGAATGATGGATGGTCAGATTG-AAAGAAATATTACGTGGTGAAAGGGGTACCCGAGAGGACA-GTATCA-AATTATTCTAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TCTCATCAACACACGGC-----TGTACGAGTGTATTGAGCT--TTCGTAATCAACCAGTGACGAATAGATA-TGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|4 : tGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTTTGCACATTTGGTCCGAGATTGTAAAG--C--AT--TGACGG-CGAGTACTAAGG--ATAGAACCA-TCAGAAGCCTAGGAAGTTGACAAACCGGACTCAATCAGAATT-AGAGGGAATGATGGATGGTCAGATTTGAAAGAAATATTACGTGGTGAAAGGG-TACCCGAGAGGACACGTATCATAATTATT--AATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GA--CACGT-GTATCAG-AAGT-ATCATTCTTATTGAACAAC-T-AATCCCTCTCAACGAAACACGACGTGTCTGTACG--TGTATTGAGCT--TTCGTA-TCAACCAGTTGACAATAGATACTGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCA-CATTTGGACTAGTATGAAAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TT-TAA-TCTACATGTATAgcatgaacatatatgttag
gi|5 : AGTAGTTG----GAA-CACGTTTTGTCAGAAAGTCACTAATCCT-TTGGACAAC-TTAATCC-TATTATCATTACACAG---------ACA--TGTA---AGCTCTATCACAATCAATTAGGGGCAAATAAATA-TATGTAATATTAAAGTGATATTGTTAACTCATTATTTTGGTGTAATTTAAAATTTGA--TAG-A-GATAACTTGAGAATGAATGACAAGGAGA-AATGGCTCGCAATG-GAA-GAGAAG-TA-TTAT
gi|6 : cgtaGTAGTGTAGTGTTAG-GGTTTTG-----GCGCGCCT--GGT-TAAGGTTTGCTCCTTAAAATTT-GCTAATTCGGTA-GAGAG-GTAA-GT-C--AA--GG--AG-C----------------GAAC--AT----AAT---GGAA-T-GA--------AT-CGATCAGAATTTAGAGCGAATGATAGATTGCCAGGTTT-AGAAAAAGATCATGTGATG-AAGGGGTACCTGAGAAGATA-
gi|7 : AGTAGTATATAGC--G---ATCCA-ATTTGATC-CAT--GGG-TAAGGTTT-------------T-GC--------TC----AG-GTAT-G--CTAAA--GG--GG-TG-GCTCTAAGGGAAG-GAACCAATCATAAATC-AGGAATG-GATAAAACGG----AATCAGAATTGAGAGGGAATGATAG--TGTCAGGGTT-AAAGAAATATCACG
gi|8 : t-TAAGGTTTGCATGTTAAGATTT-GCACATCTGGTT-GATAG-GTAA-AGCC--AA--AG--GT-CG-GACGTAAAGGAAT-GAACCAATCATAAATC-AGGAGGT-GACGAAACTGTT-C--T----ATATAGAGGGAATGATAGATTGTCAGGTTT-AAATAA
gi|9 : tttataatccacagtAAGGGAGT-AAACCAATCAGAAATT-AGAAAGT-TACAAAACAGAC-CAATCAGAATTTA-AGGGAATGATAGATTGTCAGGTTT-AGACATTTTTCACAAGATGAGAGGGGTACCCGAGAGGATA-GTATTA-AATTATTCTAATT
blockSeqs : A TA TGG TAAATGCGCG . C C T A C T A GC TA TT AC CGA TA TA G CT T C A T G G C A A C T T GT . C GT . . CG G CATCAT A TT C C AC CGTGTC AG T CTA TT GGGCG C GTA T A CTCATTC A AC TAT A ATG AAGG T T C . TG C . A .
blockSeqs : A . TGG TAAATGCGCG . . A . A . . . T . . . CA TA T G T . C A . T . G G G . G . CT . . . . . CG G CACTAA . T . C AA C . T A CC TGACG . . G C CTCATTA A . A A . . T T C . TG C . A .
blockSeqs : T . GG ATTTGATC . . A . A . . . . . . . TG CT G T C . A A . T . G G G . T . CT . . . . . TT A ATCAT . T . A TT . . . T CC TTGAC . . G C . . . A A . . . C A . G . . .
blockSeqs : T . . ATATCGT . . T . T . . . . . . . CG AC T T C . A T . G . G G C . T . CT . . . . . G . T TT GGGCA . . T T .
blockSeqs : T . . ATATCGC . . T . A . . . . . . . C . T G T . A A . T . A G C . T . T . . . G
blockSeqs : A . . GCGCG . . . . . . . . . . . . . . . . . T . G . T . . . .
blockSeqs : . . . T . T .
blockSeqs : . C
blockSeqs : . .
blockSeqCons : TANATGCGCG ** ** CG** ** **** CG CC NGGCG
originalCons : NAGTAGTATAGNGC--G-GGATTCA-ATATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
finalCons : NAGTAGTATAGNGC--G-GGATTCATANATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GGCG--GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TATCAAGATTAGCAAAATTACATGTCAATAATTACTATTAAATGATGAAGGTTATTCAACCAAATACATCTACTGTCCTGTAACATATCATTGCAACTCTTTGTATTCTAAAAGACATTAATAATGCAACTATATATTGGCAGATTATTATGTTATCTTTAGACGATCTCATATGCGATTATATTCAAATAATTATATAAGTAATCGATAAATAATTGTTTCCATAAAATACACGATTTTAAATCTAATTGGTATATTACCTACCTAATGGTGATTTATTGGGAAATAATTGATAAAGGGAAGGAGTAATACTAACATCAACTATACAGAGAAAAGAAGCATTATAAATGAATAAAATAATGGATAGTTAAATATCCAGGTATATGAACATCTGTCCAGCCGAGTCAGTTTTCCGTTTTTTTTTGTCTAACACAAAAAAAAAGCTGGAATAAAATTAACGAGATCTAAAGTCGGTGATGATATCCAATAAAATTTGTGGAATATCTATTATGTG
Unaligned ( gi|10 ): AAGTGATTGCTATTAAAAATTTATATACATATATGTATAAATAATCAATAAAGTTTTATTTGTAAACATAACTATCCACGATGTTCATCGTAAACATACTGGTGTATTTCAAAATTT
Alignments
lowQualScore : 22222 222222 11 11 11 1111 11 1 111 1 11 222222 11 1 111 111 6666666 11 111 111 2222 1 1 1
lowQualScore : 1 77777 111111 3 11 6 1 6 5 5 5 99 77 99 99 9999 55 0 77 3 77 0 5 1 1 5 0 6 4 4 4 1 5 1 5 88 0 11 8 99 4444 6 11 6 777777 0 111 0 1 44 777777 88 5 222 0 0 22 55555 8 444 1 1 2222222 3 33 111 3 777 1111 3 1 0 1 0 55 2 0 7 3
lowQualScore : . ..... ...... . .. . . . . . . .. .. .. .. .... .. . .. . .. . . . . . . . . . . . . . . .. . .. . .. .... . .. . ...... . ... . . .. ...... .. . ... . . .. ..... . ... . . ....... . .. ... . ... .... . . . . . .. . . . .
lowQualScore : 0 00000 666666 2 00 7 0 7 7 7 7 33 99 22 22 7777 22 7 00 0 44 7 7 3 7 7 1 1 0 1 5 0 0 4 7 00 8 00 0 22 2222 7 88 4 222222 0 000 0 0 22 555555 00 5 444 8 8 88 22222 0 000 0 0 6666666 2 88 000 2 555 2222 2 2 8 0 0 88 5 0 0 3
consensus : NAGTAGTATAGTGC--GTGGATTTATANATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
Reference ( family-7190 ) : NAGTAGTATAGNGC--G-GGATTCATANATGCGCGCCC--GGG-TAAGGTTTGCACGNTAAAATTT-GCACATTTGGTC-GAGAG-GTAA-G--C--AA--GG--GG-CG-GTNCTAAGGGAAT-GAACCAATCAGAAATC-AGGAAGT-GACAAAACGGAC-CAATCAGAATTTAGAGGGAATGATAGATTGTCAGGTTT-AAAGAAATATCACGTGATGAAAGGGGTACCCGAGAGGANA-GTATCA-AATTATTCTAATTAAAAATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TNTCATCGANACACGGC-----TGTACGAGTGTATTGAGCT--ATCGTAATCAACCAGNGGCGAATAAATA-TGT---ANANTAAAGTGATATTGTTAACTCATT-TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACANAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|1 : AGTAGTATAGAGC--G---ATTCA-ATAT---CATCCTGGGG-TAAGGTTTGCACGGTAAAATTT-GCACATTTGGTC-GAGAG-GTAT-GA-C--AA--GG--GGGTG-GTCCTAAAGGAAG-GAACCCATCAAAAATC-AGGAAGG-AACAAAACGGAC-CACTCAGAATTGAGAGGGAATGATAAAGTGTCAGGTTG-AAAGAAATATCACGTGATAAAAGAGGTACCCTAGAGGATT-GTATCA-AACTATTATAATTATAAATTTCCTCTTACATATTGGAGCCCCTCCACA-GAGTA--CGAATCGAAGCACGCC------GAAAATC------CTT-TAGACCGACTT-AATCC-TATTATCG--ACACGGC-----TGTACAAGTGTA-TGAGCA--ACCGTAATC--------------AAATA-TGT---ACAATAAAGTGATATTGTTAA-------TTTTGGTGTATTTTAACGCTTGA--TAG-A-GATAGATGG-AA---AATGTC----AGATAATGAATGACAAAGTAAAT-TAAAACCACTTGTGACTGTACAAGTGTAA
gi|11 : CAGGTTT-CAA-AAATATCGTGT-ATGAAAGAG-TACCCGGG--GAAA-G---CT-GGTCCTTT--ATCAAAAATATTCCCT-----ATTGGAG-TCCTCTGCACGAGTG--TG----G-A-CACGT-GTATCAGGAAATcctaggtacttgaaccaaagcatttgtgtacatacattacgaacatgaatcggaaattgagaggaaaaacatggttgttacataacccctcaaacaattgattatctctacacggaagtataagacggtttgtcgtacttatgagacaattccaactgtaatggaattaaggtgaataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttatcaaaactttcaaacattattttttatctaaaatttacacattacatgattactattaacgatgaaaagttctccaccaaatactgtctgtaacattatttaagtattttaagaagactcatatactgtatatgcagaaatataattaaactatgtgattattaaaaatttatatagcggtataagcaatcgataaagttttatttacataaatatgcaatgttaatcgtaattaagtggtacattattcatactgatgtatttctaaatttgataaagaaagataactctcaactacagagaaaatccttaatatgtgaatagtaaaccagtatgaatgtgtcagctgagtcattagtcctacaagcggacattatcaaaattaacgagatcaaagttggtgatgataccaacgcaatttgtactattaatgtgaaatttacaggtataactaatgaattttatttgtgcactatttaaaaacc
gi|12 : GATTC-AAACAAATATCACGTGGTGAAAGGGATACCCGAGAGGAGA-GTATCA-AATTATTGTGATTAAAAATGTCCCCTTGC--ATTGAGGCTCCTCCGCG-AAGTT--TG----GAA-CACGCCGgtctt
gi|13 : TCAGAATTGAGAGGGAATGATAGAGTGTCATTTTG-AAAGAAATATCACGTGATAAAGGGGGGACCCAACAGGAGA-GGATCA-AATTATTCTAATTAAAAAa
gi|14 : GTAGTATAGAGC--G---ATTCA-ATAT-CGT-CCT--GGGCTAAGGTTTGCACACTAGAATTT-GCACATTGGGTC-GAGAG-GCAA-G--C--
gi|15 : tCT--ATCACAATCAATTAGGGGCGAATAAATA-TGT---ATAATAAAGTGATATTGATAACTCATTCTTTTGGTGTAc
gi|2 : AGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTT-GCACATTTGGTC-GAGAT-GTAA-G--C--AATTGG--GG-CA-GTACTAAGGGAAT-GAACCAATCAGAAGCT-AGGAAGT-GACAAACCGGAC-CAATCAGAATTTAGAGGGAATGATGGATGGTCAGATTG-AAAGAAATATTACGTGGTGAAAGGGGTACCCGAGAGGACA-GTATCA-AATTATTCTAATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GAA-CACGTCGTATCAGGAAGTCATCATTCTT-TTGAACAAC-T-AATCC-TCTCATCAACACACGGC-----TGTACGAGTGTATTGAGCT--TTCGTAATCAACCAGTGACGAATAGATA-TGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCAACATTTGA--TAG-A-GATAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TTATAA-TCTACATGTATAA
gi|4 : tGTAGTATAGTGT--GTGGATTTATAAATGCGCGCCC--GAG-TAACGTTTGCACGATAAAATTTTGCACATTTGGTCCGAGATTGTAAAG--C--AT--TGACGG-CGAGTACTAAGG--ATAGAACCA-TCAGAAGCCTAGGAAGTTGACAAACCGGACTCAATCAGAATT-AGAGGGAATGATGGATGGTCAGATTTGAAAGAAATATTACGTGGTGAAAGGG-TACCCGAGAGGACACGTATCATAATTATT--AATTAAACATATCCCCTTAC--ATTGGGGCCCCTCCGCA-GAGTA--TG----GA--CACGT-GTATCAG-AAGT-ATCATTCTTATTGAACAAC-T-AATCCCTCTCAACGAAACACGACGTGTCTGTACG--TGTATTGAGCT--TTCGTA-TCAACCAGTTGACAATAGATACTGT---AGACTAAAGTGATATTGTTAA-------TTTTGGTGTATTTCA-CATTTGGACTAGTATGAAAACTGGAAA---AATGAC----AGATAATGATTTACACAG-AAATGTAAAGCTA-TT-TAA-TCTACATGTATAgcatgaacatatatgttag
gi|5 : AGTAGTTG----GAA-CACGTTTTGTCAGAAAGTCACTAATCCT-TTGGACAAC-TTAATCC-TATTATCATTACACAG---------ACA--TGTA---AGCTCTATCACAATCAATTAGGGGCAAATAAATA-TATGTAATATTAAAGTGATATTGTTAACTCATTATTTTGGTGTAATTTAAAATTTGA--TAG-A-GATAACTTGAGAATGAATGACAAGGAGA-AATGGCTCGCAATG-GAA-GAGAAG-TA-TTAT
gi|6 : cgtaGTAGTGTAGTGTTAG-GGTTTTG-----GCGCGCCT--GGT-TAAGGTTTGCTCCTTAAAATTT-GCTAATTCGGTA-GAGAG-GTAA-GT-C--AA--GG--AG-C----------------GAAC--AT----AAT---GGAA-T-GA--------AT-CGATCAGAATTTAGAGCGAATGATAGATTGCCAGGTTT-AGAAAAAGATCATGTGATG-AAGGGGTACCTGAGAAGATA-
gi|7 : TTTGCTC----AG-GTAT-G--CTAAA--GG--GG-TG-GCTCTAAGGGAAG-GAACCAATCATAAATC-AGGAATG-GATAAAACGG----AATCAGAATTGAGAGGGAATGATAG--TGTCAGGGTT-AAAGAAATATCACG
gi|8 : tagtagtatatagcgatccaatttgatccatgggtaaggt-TAAGGTTTGCATGTTAAGATTT-GCACATCTGGTT-GATAG-GTAA-AGCC--AA--AG--GT-CG-GACGTAAAGGAAT-GAACCAATCATAAATC-AGGAGGT-GACGAAACTGTT-C--T----ATATAGAGGGAATGATAGATTGTCAGGTTT-AAATAA
gi|9 : tttataatccacagtAAGGGAGT-AAACCAATCAGAAATT-AGAAAGT-TACAAAACAGAC-CAATCAGAATTTA-AGGGAATGATAGATTGTCAGGTTT-AGACATTTTTCACAAGATGAGAGGGGTACCCGAGAGGATA-GTATTA-AATTATTCTAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TATCAAGATTAGCAAAATTACATGTCAATAATTACTATTAAATGATGAAGGTTATTCAACCAAATACATCTACTGTCCTGTAACATATCATTGCAACTCTTTGTATTCTAAAAGACATTAATAATGCAACTATATATTGGCAGATTATTATGTTATCTTTAGACGATCTCATATGCGATTATATTCAAATAATTATATAAGTAATCGATAAATAATTGTTTCCATAAAATACACGATTTTAAATCTAATTGGTATATTACCTACCTAATGGTGATTTATTGGGAAATAATTGATAAAGGGAAGGAGTAATACTAACATCAACTATACAGAGAAAAGAAGCATTATAAATGAATAAAATAATGGATAGTTAAATATCCAGGTATATGAACATCTGTCCAGCCGAGTCAGTTTTCCGTTTTTTTTTGTCTAACACAAAAAAAAAGCTGGAATAAAATTAACGAGATCTAAAGTCGGTGATGATATCCAATAAAATTTGTGGAATATCTATTATGTG
Unaligned ( gi|10 ): AAGTGATTGCTATTAAAAATTTATATACATATATGTATAAATAATCAATAAAGTTTTATTTGTAAACATAACTATCCACGATGTTCATCGTAAACATACTGGTGTATTTCAAAATTT
Unaligned ( gi|16 ): CAGTATAGAGCGATTCAATATCGCCCTGGG