lowQualScore : 1111111111111111111111111111111111111 1111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 7777777777777777777777 11 1 22222222 3333333333333333333333333333333333333 2 11 1 11 1 111 333 1 55555555555555 3333333 0000000000000000000000000000000000000000 2222222222222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 111 1 11 11 22 1 22 333333333333333 111 6666 22222 444444444444444444444444444 333
lowQualScore : 6 9999999999999999999999 8 8 3 99 0 8 1 1 99999999 9999999999999999999999999999999999999 0 33 0 66 5 000 5 444 1 00000000000000 5 4444444 1111111111111111111111111111111111111111 3 5 0000000000000000000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 777 0 22 33 22 6 5 7 6 8 66 6 999999999999999 111 1 88 0000 00000 6 999999999999999999999999999 0 333 3
lowQualScore : . ...................... . . . .. . . . . ........ ..................................... . .. . .. . ... . ... . .............. . ....... ........................................ . . ................... ...................................................................................................................................................................................... .. ... . .. .. .. . . . . . .. . ............... ... . .. .... ..... . ........................... . ... .
lowQualScore : 0 0000000000000000000000 0 0 0 44 8 0 8 0 00000000 8888888888888888888888888888888888888 0 88 0 00 0 000 2 333 0 11111111111111 7 4444444 3333333333333333333333333333333333333333 9 3 8888888888888888888 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 555 0 55 88 33 0 0 3 0 3 77 0 222222222222222 000 8 00 0000 00000 4 777777777777777777777777777 2 222 0
consensus : NNNNNNNNNNNNNNAGTAAAGGTCCGTTTACACNNCAAGTCAAAACAGGGGCG-TAGC-TAGGGGGTG-ATTGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGGGGCGAAGCTGGCGAGTTTTCAGCATTTTCTG--ACACTTAA-TTTTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCC-GAGTTCCAACGTTTAAA--AT---GCTTATTTCCTC-ATCA---T---GAAAT------T----A------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAATA-A--TTTTG-----TGCTATCTATNNNNGNTNNTTATGNNNTTTTTGATNNANNAANAANNANNNGTNAGAAAAAAAAA-AA----------------------AATG--CTGTTACAATACAAAAATTAT--ATT--AA--TA-ATT-TTTGCATGAATTTNAA--GAT-TCCGCTTATT-TCTCTCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAAAGGAGAA-TCTCGTCT-TGCTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTTT--TAGGCTTTCCG-----AACAAATCGG-AAATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACGT
Reference ( gi|1 ) : TGAAATATTGTTAAAGTGAAGGT----TTATATTCCTATACAAGGCAGGGGCG-TAGC-TAGAGGGTG-TTTGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCA-TTTCTG--ACACTTAA-TTTTGAGCGTCAAGA---AAATGAGATTTACATTAAAATAATCC-CTGTTCAAACGTTTAAA--GG---GCTTATTTCCTC-ATCA---T---GAAAT------T----A------ACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAATA-A--TTTTGT---TTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAA-AA----------------------AATGTACTGTTAGTATACAAAAATTAT--ATT--AA--TA-ATTATTTACATGAA-TTGAA--GAT-TCCGCTTATTGTCTTTCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGAT-TCTCATCTATATTAGGTGTGCTCTTTG-TTAATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT-----TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACAT
gi|20 : AGTAAAGGTCCGTTTATACAGCAAGTCAAAAAAGGGGTG-TAGA-TGGAGGGCG-AT-GAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGG
gi|2 : tgaaatT----TTACATTTC------AAACAGGGGTG-TAGC-TAGGAGGTG-ATTGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------T
gi|3 : tCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TTAAAATAT---GCTTATTTCCTC-ATCATTTT---GAAAT------T----A------ACGATTGATAAAAA--------GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTATAGA--TTTTA-----TGCTA-----------------TCTGTCCTGATGCTCTATGATAATTTTCAAGAAGAAAAAAAAA-AA----------------------GATG--CTGTTACAACACAAAAATTAT--A----AATCTATATTTTGTGCATGAATTTAAA--GAT-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|17 : cCAGGGGCG-TAGC-TAGGGGGTG-ATTGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCA-TTTCTGATACACTTAA-TTTTGATTATCCAGA---AA
gi|21 : CAGGGGCG-TAGC-TAGGGACTG-GTTAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|2 : gttttagcaatattcatCTG--ACACTTAA-TTTTGAGTGTCCAGA---AAATGAGATTTACATTAAAATAATCC-GAGTTCCAAC-TTTAAA--AAAATGCTTA-TTCCTC-ATCA---T---GAAAT------T--------------------------AGACAAAGGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATT-A--GTTTTTAAATTGCTATCTATCCTAGCGCTCTATGATATTTTTGATAAAAAAAAAAAAAAAAGCAAAAAAAAAAAACAAAACAAAAAAGCCAAAACAAAACAATGTACTGTTACGATACAAAAATTATAAATT--TA--TA-AATATTAGTATGAA-TTTAAGGGA--TCCACTTATT
gi|7 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG--ACACTTAA-TATTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCC-GAGTTCCAATG--------------CTTATTTCCTC-ATCA---TTTTGAAAT------T----ACATGTAACGATAAATAA--AAAGAA---GGATTGCCTGATTTATGATGGGATT----------------TA-A--TTTT---------TATCCAAAAGGTTTTATGCAATATGTCCTGATCAATGCTCTATGGTATTTTTGAAG--AAAA-AA----------------------AAT---CTGTTGCAATACAAAAATTAT--ATT-------------TGTGCATGAA-TT--------------------TTTCTCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ct
gi|5 : TTTGATTGTCCAGA---AAATGATATATACATTTAAATA-TTT-GAGTTCAA-CGCTTAAA--AA---GCTTATTTCCTCCATCA---TTTTGAAAT------A----A------ACAATAAATAA---AAGAA---GGAT-GCCTGCTTTATTATGGGATTTAATTTATTCT-CCAA-A-AGGTTTTG-----TGCTATCTGTTTCTGATGCTTATGATATTTTTGAGATATCAAAAGATAACTGTTAC------AAT-AA----------------------AATG----------AT---AAATTTAT--ATT----------TTGTT--GATGAA-TTTAA---ATATTCGCTTATT---TT----TAAT---TTT---TGGTGTGTTTACATAGTAATCAAA
gi|12 : GTCCAGA---AAATGAAATTTGCATTAAAATAATCC-GAGTTCCAACGTTTAAA--AT---GCTTATTTCCTT-ATCA---T---GAAAT------TATTAA------ACAATAAAGAAAAAA--------GATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAATA-AG-TTTTG-----TGCTAatcatgtgctttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|9 : GTCCAGA---AAATGAGATTTACATTAAAATAATCC-GAGTTCCAAT--------------GCTTATTTCCTC-ATCATTTT---GAAATTACATAT----A------ACGATAAATA--AAAAGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAATAGA--TTTTAT---tcaatcctgatgtgttatgatatatt
gi|11 : attTTTAAA--AT---GTTTATTTCCTC-ATC--------GAAAT------T----A------AC---------GAAAAGAAAGAGGATTTTTTTTTTTAactttatgtcctgatgctctatgatatttttgaagaagaacaaaaattcagttgcattacaaatattataaatctatgatatttt
gi|11 : AAAA-AA----------------------GAT---CTGTTATAATACAAAATTTA---ATTTAAA--TT-ATT-TTTGCATGAATTTAAA--GAT-TCT-CTTCTCATCTccaattccattaagttttttgctaactatcctaatcctctatattattttcgtgcaaaaaagatctgttataatacaaaatttaatttaaattatttttgcatgaatttaaagattctcttctcatctcaatttatct
gi|13 : tttaaaatgtttatttcctcatcgaaattaacgaaaagaaagaggatttttttttttaccaattccattaagttttttgctaactatcctaatcctctatattattttcgtgcAATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGAA-TCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGT--GTTATACTTTCCGAAAAAAAAAAATCGGAAAATTT-----TC--TGcaatttatct
gi|6 : TTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGT
gi|16 : TACAAGATAAAAAAGGAGAA-TCTCGTCT----------------CTG-CTAATTCTTCTGCCTTTT--TAGGCTTTCCG-----AACAAACTGGTAA-TTT-----TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACATgctttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|4 : tcTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT-CT-TCTG-C-----CTTTT---------TAGGCTTTCCG-----AACAAACTGG-TAATTT-----TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACATttaa
gi|5 : tcTGTGCTTTTTG-TAAATTTATTTGCCGTTT--TAGGGTTTCCG-----AATAAAT-----AGTTTTTATCTC--TGTTGTTTTTTTTTTTAAACATG-TTTCTCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatcaTGTGCTTTTTG-TTAATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG----TT---------------------TTTTGAAACATGTTTTCTCACAACGT
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|18 ): AGGATTTTTAACCAATATAGGTTTTGTGCTATCTGTCTTGATGCTCTATATAATTTTTGAAGAAGAAAAAAAGATACTGTTGCAATACAAAAATTATAAAT
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 222 222222 22222222 77777777777777777777777777777777777 11 1111111 333 222222 11111111 333333 1111111 222222222222 00000000000000000000000000000000000000000000000000000000000000000 333333333333 222222222222222 1 111 11 111 1 3333 11111 22 11111 22222 1
lowQualScore : 000 0 222 333333 6 6 6 6 44444444 33333333333333333333333333333333333 7 7 11 8 888 3 0 5 5 6666666 66 5 555 888888 0 55555555 3 0 888 1 4 4 66 222222 6666666 66 777 4 999999999999 333 33333333333333333333333333333333333333333333333333333333333333333 222222222222 6 1 1 777777777777777 0 0 111 8 8 11 222 3 4 0 9999 33 2 1 6 99 66666 3 55 66666 99 00000 5 8 2
lowQualScore : ... . ... ...... . . . . ........ ................................... . . .. . ... . . . . ....... .. . ... ...... . ........ . . ... . . . .. ...... ....... .. ... . ............ ... ................................................................. ............ . . . ............... . . ... . . .. ... . . . .... .. . . . .. ..... . .. ..... .. ..... . . .
lowQualScore : 000 7 777 000000 7 7 7 7 22222222 77777777777777777777777777777777777 3 3 00 0 888 0 1 7 0 1111111 99 0 000 888888 4 99999999 9 2 888 0 4 4 33 111111 4444444 11 888 4 888888888888 000 44444444444444444444444444444444444444444444444444444444444444444 444444444444 7 0 0 666666666666666 0 8 777 0 0 00 222 2 0 0 5555 22 5 5 7 22 77777 7 22 77777 22 00000 4 8 0
consensus : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNCAA--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTTCTG--ACACTTAA-TTTTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCT-CATCATTTTGAAAT------TAACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA---AG-TTTT----G--TGC--TAT---CT-AT-CCCTGNTNCT-TATGATATTTTTGA---A--AA-A----------AGAAAAAAAAA-AAAA------------------------TG--CTGTTGCAATACAAAAATTAT--ATT---AT-AATT-TTTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTGTT-AATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
Reference ( family-710 ) : NNNNNNNNNNNNNNAGTAAAGGTCCGTTTACACNNCAAGTCAAAACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGGGGCGAAGCTGGCGAGTTTTCAGCATTTTCTG--ACACTTAA-TTTTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCT-CATCA---TGAAAT------TAACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA---A--TTTT----G--TGC--TAT---CT-AT-NNNNGNTNNT-TATGNNNTTTTTGATNNANNAANAANNANNNGTNAGAAAAAAAAA-AAAA------------------------TG--CTGTTACAATACAAAAATTAT--ATT--AAT-AATT-TTTGCATGAATTTNAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAAAGGAGA-ATCTCGTCT-TGCTACGTGTGCTTTTTGTT-AATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG-AAATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACGT
gi|1 : AGTGAAGGT----TTATATTCCTATACAAGGCAGGGGCG-TAGC-TAGAGGGTGTT-TGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCATTT-CTG--ACACTTAA-TTTTGAGCGTCAAGA---AAATGAGATTTACATTAAAATAATCCCT-GTTCAAACGTTT---AAA--GGGCTTATTTCCT-CATCA---TGAAAT------TAACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAA-TA---A--TTTT----GTTTGC--TAN---NN-NN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAA-AAAA------------------------TGTACTGTTAGTATACAAAAATTAT--ATT--AAT-AATTATTTACATGAA-TTGAAGATTCCGCTTATTGTCTT-TCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGA-TTCTCATCTATATTAGGTGTGCTCTTTGTT-AATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT-----TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACA
gi|11 : tgaaatattgttaaTTT---AAA--ATGTTTATTTCCT-CATC-----GAAAT------TAACGA-----AA-AGAAAGA---GGATTTTTTTTTTTA---------CCAAT------T-CCAT-TA---AG-TTTT----T--TGC--TAA---CT-AT-CCTAATCCTC-TATATTATTTTCG-TGCA------------------------AAA-AAGA------------------------T---CTGTTATAATACAAAATTTA---ATTTAAAT-TATT-TTTGCATGAATTTAAAGATTCT-----CT-TCTCATCT-CAATTTATCT---
gi|12 : GTCCAGA---AAATGAAATTTGCATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCT-TATCA---TGAAAT------TATTAAACAATAA-AGAAAAA---AGATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAA-TA---AG-TTTT----G--TGC--TAT---CA-AT-CCTGATGTGT-TATGATATATT
gi|13 : AATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGA-ATCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGTG--TTATACTTTCCGAAAAAAAAAAATCGGAAAATTT-----TC--TG
gi|16 : TACAAGATAAAAAAGGAGA-ATCTCGTCT-C---------------TGCT-AATTCTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGG-TAATTT-----TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACA
gi|17 : tcCAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCA-TTTCTGATACACTTAA-TTTTGATTATCCAGA---AAttaa
gi|18 : ATTT-TTAA-CCAA-TATAGG--TTTT----G--TGC--TAT---CT-GT--CTTGATGCTCTATATAATTTTTGA--------------------AG-AAGAAAAA-AAGA------------------------TA--CTGTTGCAATACAAAAATTAT--A
gi|2 : aggTTTACATTTCAA------ACAGGGGTG-TAGC-TAGGAGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------Taat
gi|2 : tCTG--ACACTTAA-TTTTGAGTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAAC-TTTAAAAAA--ATGCTTA-TTCCT-CATCA---TGAAAT------TA--GACA-----------AA---GGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATTA---G--TTTTTAAAT--TGC--TAT---CT-AT-CCTAGCGCTC-TATGATATTTTTGATAAAAAAAAAAAAAAAAGCAAAAAAAAAAAACAAAACAAAAAAGCCAAAACAAAACAATGTA--CTGTTACGATACAAAAATTATAAATT--TATAAATA-TTAGTATGAATTTAAGGGATCCACTTATT-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|20 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTAAAGGTCCGTTTATACAGCAAGTCAAAAAAGGGGTG-TAGA-TGGAGGGCGA--TGAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGG
gi|21 : tgaaatCAGGGGCG-TAGC-TAGGGACTGGT-TAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|3 : gttttagcaatattcatCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TT---AAAATATGCTTATTTCCT-CATCATTTTGAAAT------TAACGATTGATAA-A----AA---GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTA-TAG--A--TTTT----A--TGC--TAT---CT-GT--CCTGATGCTCTATGATAATTTT-------CAAGA----------AGAAAAAAAAA-AAGA------------------------TG--CTGTTACAACACAAAAATTATAAATC--TAT-ATTT-TGTGCATGAATTTAAAGATT
gi|4 : cTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT---------------CTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGG-TAATTT-----TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACA
gi|5 : tcTTTGATTGTCCAGA---AAATGATATATACATTTAAAT-ATTTGA-GTT-CAACGCTT---AAA--AAGCTTATTTCCTCCATCATTTTGAAAT------AAACAATAAAT---AAAAGAA---GGA-TGCCTGCTTTATTATGGGATTTAATTTATTCT-CCAA--A---AGGTTTT----G--TGC--TAT---CT-GT-TTCTGATGCT-TATGATATTTTTGAGATATCAAAAGATAACTGTT------ACAAT-AAAA------------------------TG----------AT---AAATTTAT--ATT--------TT-GTTG-ATGAATTTAAATATT-CGCTTATT-T------T-TAAT---TTT---TGGTGTGTTTACATAGTAATCAAAA---TCATGTGCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|5 : CATGTGCTTTTTGTA-AATTTATTTGCCGTT--TTAGGGTTTCCG-----AATAAAT-----AGTTTTTATCTC--TGTTGTTTTTTTTTTTAAACATGTT-TCTCtttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatTTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGTGC
gi|6 : CATGTGCTTTTTGTT-AATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG----T---------------------TTTTTGAAACATGTTTTCTCACAACGtttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|7 : ttttagcgtgttacatgtacaaacattG--ACACTTAA-TATTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCC------------A--ATGCTTATTTCCT-CATCATTTTGAAATTACATGTAACGATAAAT-A-AAAAGAA---GGATTGCCTGATTTATGATGGGATTTAATTT-TTAT-CCAA--A---AGGTTTT----A--TGCAATATGTCCTGAT-CAATGCTC---TATGGTATTTTTG-------------------------AAGAAAA-AAAA------------------------T---CTGTTGCAATACAAAAATTAT------------ATT-TGTGCATGAATTTT------------------TC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ctaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|9 : ATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCC------------A--ATGCTTATTTCCT-CATCATTTTGAAATTACATATAACGATAAAT-A-AAAAGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAA-TAG--A--TTTT----A--TAC----T---TT-ATGTCCTGATGCTCTATGATATTTTTGA----------------------AGAAGAACA-AAAA------------------------TT--CAGTTGCATTACAAATATTAT--A
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG
Alignments
lowQualScore : 222 3333333333 22222222 66666666666666666666666666666666666 2 11 11111111 111 111111 1111111 1111 1111111 3333333333333333333333333333333333333 222222222222 222 44444444 111111 1111 1 111 11 111 1 11111 33 11111 22222 1
lowQualScore : 000 1 5555555555 6 6 6 6 44444444 77777777777777777777777777777777777 3 11 8 888 3 5 0 66666666 66 5 888 444444 4444444 444 0 5 3333 888 1 4 4 66 6666666 5555555555555555555555555555555555555 4 777777777777 55 444 33333333 66 666 5 1 3 222222 8 3333 0 0 111 8 8 11 222 3 1 0 5 888 2 1 6 99 66666 3 11 66666 99 00000 5 8
lowQualScore : ... . .......... . . . . ........ ................................... . .. . ... . . . ........ .. . ... ...... ....... ... . . .... ... . . . .. ....... ..................................... . ............ .. ... ........ .. ... . . . ...... . .... . . ... . . .. ... . . . . ... . . . .. ..... . .. ..... .. ..... . .
lowQualScore : 000 0 3333333333 7 7 7 7 22222222 00000000000000000000000000000000000 7 00 0 888 0 7 7 88888888 99 0 444 444444 8888888 555 1 0 4444 888 0 4 4 11 4444444 0000000000000000000000000000000000000 4 666666666666 22 555 99999999 00 111 7 0 2 666666 0 8888 0 8 777 0 0 00 222 2 0 0 6 888 5 5 7 22 77777 7 77 77777 22 00000 4 8
consensus : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCA-TTTCTG--ACACTTAA-TTTTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCTC-ATCATTTTGAAAT------TA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAATA--GGTTTT----G--TGCTA----------------TCTGT-CCTG----ATGC-TCTATGATA-TTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTATAAATTT---AT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
Reference ( family-710 ) : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTTCTG--ACACTTAA-TTTTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCTC-ATCATTTTGAAAT------TA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAATA--AGTTTT----G--TGCTA----------------TCTATCCCTG----NTNC-T-TATGATA-TTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTGCAATACAAAAATTATA---TT---AT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
gi|1 : AGTGAAGGT----TTATATTCCTATA--CAAGGCAGGGGCG-TAGC-TAGAGGGTGTT-TGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCA-TTTCTG--ACACTTAA-TTTTGAGCGTCAAGA---AAATGAGATTTACATTAAAATAATCCCT-GTTCAAACGTTT---AAA--GGGCTTATTTCCTC-ATCA---TGAAAT------TA------ACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAATA--A-TTTT----GTTTGCTANNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN-N-NNNNNNN-NNNNNN---NNNNNNNNNNNAAAAAAA-AATGTACTGTTAGTATACAAAAATTATA---TTA--AT-AAT-TAT-TTACATGAA-TTGAAGATTCCGCTTATTGTCTT-TCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGA-TTCTCATCTATATTAGGTGTGCTCTTTG-TTAATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT-----TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACAT
gi|11 : tgaaatattgttaaTTT---AAA--ATGTTTATTTCCTC-ATC-----GAAAT------TA------ACGA-----AA-AGAAAGA---GGATTTTTTTTTTTAC---------CAATT-------CCATTA--AGTTTT----T--TGCTA----------------ACTATCC-TA----ATCC-TCTATATTA-TTTTCGTGCAAAAAAGA-------------T---CTGTTATAATACAAAATTTA-A---TTTAAAT-TAT-T-T-TTGCATGAATTTAAAGATTCT-----CT-TCTCATCT-CAATTTATCT---
gi|12 : GTCCAGA---AAATGAAATTTGCATTAAAATAATCCGA-GTTCCAACGTTT---AAA--ATGCTTATTTCCTT-ATCA---TGAAAT------TA------TTAAACAATAA-AGAAAAA---AGATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAATA--AGTTTT----G--TGCTA----------------TCAAT-CCTG----ATGTGT-TATGATA-TATT
gi|13 : AATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGA-ATCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGTG--TTATACTTTCCGAAAAAAAAAAATCGGAAAATTT-----TC--TG
gi|16 : TACAAGATAAAAAAGGAGA-ATCTCGTCT----------------CTG-CTAATTCTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACAT
gi|17 : tcCAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCA-TTTCTGATACACTTAA-TTTTGATTATCCAGA---AAttaa
gi|18 : ATTT-TTAA-CCAATATAGGTTTT----G--TGCTA----------------TCTGTCT-TG----ATGC-TCTAT-ATAATTTTTG---AAGAAG-----AAAAAAA-GATA--CTGTTGCAATACAAAAATTATA---
gi|2 : aggTTTACATTTC-A-A------ACAGGGGTG-TAGC-TAGGAGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------Taat
gi|2 : tCTG--ACACTTAA-TTTTGAGTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAAC-TTTAAAAAA--ATGCTTA-TTCCTC-ATCA---TGAAAT------TA--------GACA-----------AA---GGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATT--AGTTTTTAAAT--TGCTA----------------TCTAT-CCTA----GCGC-TCTATGATA-TTTTTG---ATAAAAAAAAAAAAAAAA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|2 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---AAAAAAGCCAAAACAAAACAATGTACTGTTACGATACAAAAATTATAAATTT---ATAAAT-A-T-TAGTATGAATTTAAGGGATCCACTTATT-Tgcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|20 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacAGTAAAGGTCCGTTTATACAGC-A-AGTCAAAAAAGGGGTG-TAGA-TGGAGGGCGAT--GAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGG
gi|21 : tgaaatCAGGGGCG-TAGC-TAGGGACTGGT-TAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|3 : gttttagcaatattcatCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TT---AAAATATGCTTATTTCCTC-ATCATTTTGAAAT------TA------ACGATTGATAA-A----AA---GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTATA--GATTTT----A--TGCTA----------------TCTGT-CCTG----ATGC-TCTATGATA-ATTTT----CAAGAAGAAAAAAAAAAA-GATG--CTGTTACAACACAAAAATTATAAATCT---AT-ATT-T-T-GTGCATGAATTTAAAGATT
gi|4 : cTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT---------------CTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACAT
gi|5 : tcTTTGATTGTCCAGA---AAATGATATATACATTTAAATA-TTTGA-GTTC-AACGCTT---AAA--AAGCTTATTTCCTCCATCATTTTGAAAT------AA------ACAATAAATAA-AA--GAA---GGA-TGCCTGCTTTATTATGGGATTTAATTTATTCT-CCAAAA--GGTTTT----G--TGCTA----------------TCTGTTTCTG----ATGC-T-TATGATA-TTTTTG---AGATATCAAAAGATAA---------CTGTTACAAT---AAAATGATAAATTT---AT-ATT-T-TGTTG-ATGAATTTAAATATT-CGCTTATT-T------T-TAAT---TTT---TGGTGTGTTTACATAGTAATCAAAA---TCATGTGCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|5 : CATGTGCTTTTTG-TAAATTTATTTGCCGTT--TTAGGGTTTCCG-----AATAAAT-----AGTTTTTATCTC--TGTTGTTTTTTTTTTTAAACATGTT-TCTCtttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatTTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGTGC
gi|6 : ACATT-CATGTGCTTTTTG-TTAATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG----T---------------------TTTTTGAAACATGTTTTCTCACAACGTtttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|7 : ttttagcgtgttacatgtacaaG--ACACTTAA-TATTGATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCC------------A--ATGCTTATTTCCTC-ATCATTTTGAAATTACATGTA------ACGATAAAT-A-AAAAGAA---GGATTGCCTGATTTATGATGGGATTTAATTT-TTAT-CCAAAA--GGTTTT----A--TGCAA----------------TATGT-CCTGATCAATGC-TCTATGGTA-TTTTTG------------AAGAAAAAA-AAT---CTGTTGCAATACAAAAATTAT-------------AT-T-T-GTGCATGA-----------------ATT-TTTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ctaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|9 : ATTGTCCAGA---AAATGAGATTTACATTAAAATAATCCGA-GTTCCAA--------------TGCTTATTTCCTC-ATCATTTTGAAAT------TACATATAACGATAAATAA-AA-AGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAATA--GATTTT----A--TACTT----------------TATGT-CCTG----ATGC-TCTATGATA-TTTTTG---A------AGAAGAACAAA-AATT--CAGTTGCATTACAAATATTATAAATCT---AT-GATAT-T-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG
Alignments
lowQualScore : 222 3333333333 22222222 66666666666666666666666666666666666 11 22222222 111 2222222 111 2222222222222222 333333333333 222 111111 1111 1 111 11 111 1 11111 33 11111 22222 1
lowQualScore : 000 1 5555555555 6 6 6 6 44444444 77777777777777777777777777777777777 8 11 6 888 3 0 5 00000000 66 5 555 9999999 444 0 5 666 888 1 4 4 4 66 333 9999999999999999 4 9999 4 111111111111 55 444 888 3 6666 666 5 1 3 222222 8 3333 0 0 111 8 8 11 222 3 1 0 5 888 2 1 6 99 66666 3 11 66666 99 00000 5 8
lowQualScore : ... . .......... . . . . ........ ................................... . .. . ... . . . ........ .. . ... ....... ... . . ... ... . . . . .. ... ................ . .... . ............ .. ... ... . .... ... . . . ...... . .... . . ... . . .. ... . . . . ... . . . .. ..... . .. ..... .. ..... . .
lowQualScore : 000 0 3333333333 7 7 7 7 22222222 00000000000000000000000000000000000 0 00 7 888 0 1 7 33333333 99 0 444 1111111 555 1 0 666 888 0 4 4 4 11 999 4444444444444444 4 4444 4 222222222222 22 555 888 2 6666 111 7 0 2 666666 0 8888 0 8 777 0 0 00 222 2 0 0 6 888 5 5 7 22 77777 7 77 77777 22 00000 4 8
consensus : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
Reference ( family-710 ) : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
gi|1 : AGTGAAGGT----TTATATTCCTATA--CAAGGCAGGGGCG-TAGC-TAGAGGGTGTT-TGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GAGCGTCAAGAAA---ATGAGATTTACATTAAAATAATCCCT-GTTCAAACGTTT---AAAGG--GCTTATTTCCT-CATCA---TGAAATTA------ACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAA-TA---ATTTTGTT-TGCTANNNNNNNNNNNNNNNNNNNN-NNNNN----NNNNNNNNNNNN-NNNNNNN---NNNNNNNNNNNAAAAAAA-AATGTACTGTTAGTATACAAAAATTA---T--ATTAAT-AAT-TAT-TTACATGAA-TTGAAGATTCCGCTTATTGTCTT-TCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGA-TTCTCATCTATATTAGGTGTGCTCTTTG-TTAATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT-----TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACAT
gi|11 : tgaaatattgttaaTTT---AAAAT--GTTTATTTCCT-CATC-----GAAATTA------ACGA-----AA-AGAAAGA---GGATTTTTTTTTTTAC---------CAATT-------CCAT-TA--AGTTTTT---TGCTA----------------ACTA-TCCTA----ATCCTCTATATT-ATTTTCGTGCAAAAAAGA-------------T---CTGTTATAATACAAAATTTAATTTAAATT-----AT-T-T-TTGCATGAATTTAAAGATTCT-----CT-TCTCATCT-CAATTTATCT---
gi|12 : GTCCAGAAA---ATGAAATTTGCATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-TATCAT---GAAATTA------TTAAACAATAA-AGAAAAA---AGATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAA-TA--AGTTTTG---TGCTA----------------TCAA-TCCTG----ATGTGTTATGAT-ATATT
gi|13 : AATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGA-ATCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGTG--TTATACTTTCCGAAAAAAAAAAATCGGAAAATTT-----TC--TG
gi|16 : TACAAGATAAAAAAGGAGA-ATCTCGTCT----------------CTG-CTAATTCTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACAT
gi|17 : tcCAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCATTTCT-GATACACTTAATTTT-GATTATCCAGAAA---ttaa
gi|18 : ATTT-TTAA-CCAA-TATAGGTTTTG---TGCTA----------------TCTG-TCTTG----ATGCTCTAT-ATAATTTTTG---AA-----GAAGAAAAAAA-GATA--CTGTTGCAATACAAAAATTA---TAAAT
gi|2 : aggTTTACATTTC-A-A------ACAGGGGTG-TAGC-TAGGAGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------T
gi|2 : tCT-G--ACACTTAATTTT-GAGTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAAC-TTTAAAAAAAT--GCTTA-TTCCT-CATCA---TGAAATTA--------GACA-----------AA---GGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATTA--GTTTTTAAATTGCTA----------------TCTA-TCCTA----GCGCTCTATGAT-ATTTTTG---ATAAAAAAAAAAAAAAAA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|2 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---AAAAAAGCCAAAACAAAACAATGTACTGTTACGATACAAAAATTA---TAAATTTATAAAT-A-T-TAGTATGAATTTAAGGGATCCACTTATT-Tgcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|20 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacAGTAAAGGTCCGTTTATACAGC-A-AGTCAAAAAAGGGGTG-TAGA-TGGAGGGCGAT--GAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGG
gi|21 : tgaaatCAGGGGCG-TAGC-TAGGGACTGGT-TAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|3 : gttttagcaatattcatCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TT---AAAATATGCTTATTTCCT-CATCATTTTGAAATTA------ACGATTGATAA-AAA-------GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTA-TA--GATTTTA---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-AATTTT----CAAGAAGAAAAAAAAAAA-GATG--CTGTTACAACACAAAAATTA---TAAATCTAT-ATT-T-T-GTGCATGAATTTAAAGATT
gi|4 : cTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT---------------CTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACAT
gi|5 : tcTTT-GATTGTCCAGAAA---ATGATATATACATTTAAAT-ATTTGA-GTT-CAACGCTT---AAAAA--GCTTATTTCCTCCATCATTTTGAAATAA------ACAATAAAT---AAAAGAA---GGA-TGCCTGCTTTATTATGGGATTTAATTTATTCT-CCAA-AA--GGTTTTG---TGCTA----------------TCTGTTTCTG----ATGCT-TATGAT-ATTTTTG---AGATATCAAAAGATAA---------CTGTTACAAT---AAAATGA---TAAATTTAT-ATT-T-TGTTG-ATGAATTTAAATATT-CGCTTATT-T------T-TAAT---TTT---TGGTGTGTTTACATAGTAATCAAAA---TCATGTGCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|5 : CATGTGCTTTTTG-TAAATTTATTTGCCGTT--TTAGGGTTTCCG-----AATAAAT-----AGTTTTTATCTC--TGTTGTTTTTTTTTTTAAACATGTT-TCTCtttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatTTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGTGC
gi|6 : ACATT-CATGTGCTTTTTG-TTAATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG----T---------------------TTTTTGAAACATGTTTTCTCACAACGTtttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|7 : ttttagcgtgttacatgtacaa-G--ACACTTAATATT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATGTAACGATAAATAA-AA-AGAA---GGATTGCCTGATTTATGATGGGATTTAATTT-TTAT-CCAA-AA--GGTTTTA---TGCAA----------------TATG-TCCTGATCAATGCTCTATGGT-ATTTTTG------------AAGAAAAAA-AAT---CTGTTGCAATACAAAAATTA---T----------AT-T-T-GTGCATGA-----------------ATT-TTTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ctaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|9 : ATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATATAACGATAAATAA-AA-AGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAA-TA--GATTTTA---TACTT----------------TATG-TCCTG----ATGCTCTATGAT-ATTTTTG---A------AGAAGAACAAA-AATT--CAGTTGCATTACAAATATTA---TAAATCTAT-GATAT-T-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG
Alignments
lowQualScore : 222 3333333333 22222222 66666666666666666666666666666666666 11 22222222 111 2222222 111 2222222222222222 333333333333 222 111111 1111 1 111 11 111 1 11111 33 11111 22222 1
lowQualScore : 000 1 5555555555 6 6 6 6 44444444 77777777777777777777777777777777777 8 11 6 888 3 0 5 00000000 66 5 555 9999999 444 0 5 666 888 1 4 4 4 66 333 9999999999999999 4 9999 4 111111111111 55 444 888 3 6666 666 5 1 3 222222 8 3333 0 0 111 8 8 11 222 3 1 0 5 888 2 1 6 99 66666 3 11 66666 99 00000 5 8
lowQualScore : ... . .......... . . . . ........ ................................... . .. . ... . . . ........ .. . ... ....... ... . . ... ... . . . . .. ... ................ . .... . ............ .. ... ... . .... ... . . . ...... . .... . . ... . . .. ... . . . . ... . . . .. ..... . .. ..... .. ..... . .
lowQualScore : 000 0 3333333333 7 7 7 7 22222222 00000000000000000000000000000000000 0 00 7 888 0 1 7 33333333 99 0 444 1111111 555 1 0 666 888 0 4 4 4 11 999 4444444444444444 4 4444 4 222222222222 22 555 888 2 6666 111 7 0 2 666666 0 8888 0 8 777 0 0 00 222 2 0 0 6 888 5 5 7 22 77777 7 77 77777 22 00000 4 8
consensus : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
Reference ( family-710 ) : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
gi|1 : AGTGAAGGT----TTATATTCCTATA--CAAGGCAGGGGCG-TAGC-TAGAGGGTGTT-TGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GAGCGTCAAGAAA---ATGAGATTTACATTAAAATAATCCCT-GTTCAAACGTTT---AAAGG--GCTTATTTCCT-CATCA---TGAAATTA------ACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAA-TA---ATTTTGTT-TGCTANNNNNNNNNNNNNNNNNNNN-NNNNN----NNNNNNNNNNNN-NNNNNNN---NNNNNNNNNNNAAAAAAA-AATGTACTGTTAGTATACAAAAATTA---T--ATTAAT-AAT-TAT-TTACATGAA-TTGAAGATTCCGCTTATTGTCTT-TCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGA-TTCTCATCTATATTAGGTGTGCTCTTTG-TTAATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT-----TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACAT
gi|11 : tgaaatattgttaaTTT---AAAAT--GTTTATTTCCT-CATC-----GAAATTA------ACGA-----AA-AGAAAGA---GGATTTTTTTTTTTAC---------CAATT-------CCAT-TA--AGTTTTT---TGCTA----------------ACTA-TCCTA----ATCCTCTATATT-ATTTTCGTGCAAAAAAGA-------------T---CTGTTATAATACAAAATTTAATTTAAATT-----AT-T-T-TTGCATGAATTTAAAGATTCT-----CT-TCTCATCT-CAATTTATCT---
gi|12 : GTCCAGAAA---ATGAAATTTGCATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-TATCAT---GAAATTA------TTAAACAATAA-AGAAAAA---AGATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAA-TA--AGTTTTG---TGCTA----------------TCAA-TCCTG----ATGTGTTATGAT-ATATT
gi|13 : AATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGA-ATCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGTG--TTATACTTTCCGAAAAAAAAAAATCGGAAAATTT-----TC--TG
gi|16 : TACAAGATAAAAAAGGAGA-ATCTCGTCT----------------CTG-CTAATTCTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACAT
gi|17 : tcCAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCATTTCT-GATACACTTAATTTT-GATTATCCAGAAA---ttaa
gi|18 : ATTT-TTAA-CCAA-TATAGGTTTTG---TGCTA----------------TCTG-TCTTG----ATGCTCTAT-ATAATTTTTG---AA-----GAAGAAAAAAA-GATA--CTGTTGCAATACAAAAATTA---TAAAT
gi|2 : aggTTTACATTTC-A-A------ACAGGGGTG-TAGC-TAGGAGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------T
gi|2 : tCT-G--ACACTTAATTTT-GAGTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAAC-TTTAAAAAAAT--GCTTA-TTCCT-CATCA---TGAAATTA--------GACA-----------AA---GGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATTA--GTTTTTAAATTGCTA----------------TCTA-TCCTA----GCGCTCTATGAT-ATTTTTG---ATAAAAAAAAAAAAAAAA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|2 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---AAAAAAGCCAAAACAAAACAATGTACTGTTACGATACAAAAATTA---TAAATTTATAAAT-A-T-TAGTATGAATTTAAGGGATCCACTTATT-Tgcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|20 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacAGTAAAGGTCCGTTTATACAGC-A-AGTCAAAAAAGGGGTG-TAGA-TGGAGGGCGAT--GAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGG
gi|21 : tgaaatCAGGGGCG-TAGC-TAGGGACTGGT-TAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|3 : gttttagcaatattcatCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TT---AAAATATGCTTATTTCCT-CATCATTTTGAAATTA------ACGATTGATAA-AAA-------GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTA-TA--GATTTTA---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-AATTTT----CAAGAAGAAAAAAAAAAA-GATG--CTGTTACAACACAAAAATTA---TAAATCTAT-ATT-T-T-GTGCATGAATTTAAAGATT
gi|4 : cTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT---------------CTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGGT-AATTT-----TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACAT
gi|5 : tcTTT-GATTGTCCAGAAA---ATGATATATACATTTAAAT-ATTTGA-GTT-CAACGCTT---AAAAA--GCTTATTTCCTCCATCATTTTGAAATAA------ACAATAAAT---AAAAGAA---GGA-TGCCTGCTTTATTATGGGATTTAATTTATTCT-CCAA-AA--GGTTTTG---TGCTA----------------TCTGTTTCTG----ATGCT-TATGAT-ATTTTTG---AGATATCAAAAGATAA---------CTGTTACAAT---AAAATGA---TAAATTTAT-ATT-T-TGTTG-ATGAATTTAAATATT-CGCTTATT-T------T-TAAT---TTT---TGGTGTGTTTACATAGTAATCAAAA---TCATGTGCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|5 : CATGTGCTTTTTG-TAAATTTATTTGCCGTT--TTAGGGTTTCCG-----AATAAAT-----AGTTTTTATCTC--TGTTGTTTTTTTTTTTAAACATGTT-TCTCtttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatTTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGTGC
gi|6 : ACATT-CATGTGCTTTTTG-TTAATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG----T---------------------TTTTTGAAACATGTTTTCTCACAACGTtttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|7 : ttttagcgtgttacatgtacaa-G--ACACTTAATATT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATGTAACGATAAATAA-AA-AGAA---GGATTGCCTGATTTATGATGGGATTTAATTT-TTAT-CCAA-AA--GGTTTTA---TGCAA----------------TATG-TCCTGATCAATGCTCTATGGT-ATTTTTG------------AAGAAAAAA-AAT---CTGTTGCAATACAAAAATTA---T----------AT-T-T-GTGCATGA-----------------ATT-TTTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ctaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|9 : ATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATATAACGATAAATAA-AA-AGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAA-TA--GATTTTA---TACTT----------------TATG-TCCTG----ATGCTCTATGAT-ATTTTTG---A------AGAAGAACAAA-AATT--CAGTTGCATTACAAATATTA---TAAATCTAT-GATAT-T-TT
blockSeqs : CCG T AAGTCAAA G C C A AAGGGTTT CCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCG T AT T CAA A T CTTTAAA AT C TTT CATGTAA ACA . AAA . T A C T TA AAT . T ATCA A TGCAAAAAAGA CA GTA ATT A TATA AT G C T CCACTT . CTCA . CTA T A AT GC T T C A ATG G T T . AAAAA C AA TTATC TG TTTTT T G
blockSeqs : G AA . . . . . . . . . . G . CGTTT . . TTT CATATAA TTG . AAA . A . . . . . . . . . ATAAAAAAA G A . A TAT T . T T CGCTT . TTC . . . . . AA T A . C ACA G T . . . T T . . . T G
blockSeqs : . . . . . . . . . T . CGCTT . . TTT A TAA . AAG . A . . . . . . . . . AAAAAAGCC G G . A TAT A . C T CT . . . . . . . AC . A . A CA G T . . . T T . . . . T
blockSeqs : . . . . . . . . . G . CTT . . TTT T TAA . AG . C . . . . . . . . . CAAGAAGAA A T . A TAT T . C T . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . . G . . . . T A TAA . AG . C . . . . . . . . . AGATATCAA A . . A . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . A CA . A . A . . . . . . . . . AAGA . . . A . T .
blockSeqs : . . . . . . . . . T . . . . . . . . . AAG . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : TTT *** *** **************** G** T** CT**** ** T*
originalCons : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTCCGCTTATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG--AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
finalCons : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AATT--T-TTGCATGAATTTAAAGATTCT----ATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGGT-AATTT-----TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG
Alignments
lowQualScore : 222 3333333333 22222222 66666666666666666666666666666666666 11 22222222 111 2222222 111 2222222222222222 333333333333 222 33333333333333 1 111 11 111 1 11111 222 111 22222 1
lowQualScore : 000 1 5555555555 6 6 6 6 44444444 77777777777777777777777777777777777 8 11 6 888 3 0 5 00000000 66 5 555 9999999 444 0 5 666 888 1 4 4 4 66 333 9999999999999999 4 9999 4 111111111111 55 444 888 3 6666 666 5 1 3 11111111111111 0 0 111 8 8 11 222 3 1 0 5 888 2 1 6 99 66666 000 111 99 00000 5 8
lowQualScore : ... . .......... . . . . ........ ................................... . .. . ... . . . ........ .. . ... ....... ... . . ... ... . . . . .. ... ................ . .... . ............ .. ... ... . .... ... . . . .............. . . ... . . .. ... . . . . ... . . . .. ..... ... ... .. ..... . .
lowQualScore : 000 0 3333333333 7 7 7 7 22222222 00000000000000000000000000000000000 0 00 7 888 0 1 7 33333333 99 0 444 1111111 555 1 0 666 888 0 4 4 4 11 999 4444444444444444 4 4444 4 222222222222 22 555 888 2 6666 111 7 0 2 33333333333333 0 8 777 0 0 00 222 2 0 0 6 888 5 5 7 22 77777 333 777 22 00000 4 8
consensus : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTC----TATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG-TAATTT---TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
Reference ( family-710 ) : NNNNNNNNNNNNNNAGTGAAGGTCCGTTTATATTNC-A-A--CAAGACAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCGGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-CATCATTTTGAAATTA------ACGATAAATAA-AAAAGAA---GGATTGCCTGNTTTATGATGGGATTTAATTT-TTAT-CCAA-TA--GGTTTTG---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-ATTTTTG---AAAAAAGAAAAAAAAAAA-AATG--CTGTTACAATACAAAAATTA---TAAATTTAT-AAT-T-T-TTGCATGAATTTAAAGATTC----TATT-TCTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--CAAAGCATTCATGTACAAGATAAAAANGGAGA-ATCTCGTCTATATTACGTGTGCTTTTTG-TTAATTCTTCTGCCGTT--TTAGGCTTTCCG-----AACAAATCGG-TAATTT---TC--TGTTG-----TTTTTGAAACATGTTNTCTCACAACAT
gi|1 : AGTGAAGGT----TTATATTCCTATA--CAAGGCAGGGGCG-TAGC-TAGAGGGTGTT-TGAT-GAGGAAGCAAATCAAGGCA--------GGGGG------TT-------------TGGGTCCAGG----AAGCTGGCGAGTTTTCAGCATTTCT-G--ACACTTAATTTT-GAGCGTCAAGAAA---ATGAGATTTACATTAAAATAATCCCT-GTTCAAACGTTT---AAAGG--GCTTATTTCCT-CATCA---TGAAATTA------ACAATAAAGAAGAAAAGAAAACGGATTGTCTGATTTATGATGGGATTTAACTT-TTAT-TCAA-TA---ATTTTGTT-TGCTANNNNNNNNNNNNNNNNNNNN-NNNNN----NNNNNNNNNNNN-NNNNNNN---NNNNNNNNNNNAAAAAAA-AATGTACTGTTAGTATACAAAAATTA---T--ATTAAT-AAT-TAT-TTACATGAA-TTGAAGATTCCGCTTATTGTCTT-TCTGTAATTCATTT---TAGTGTG-TTACAT-GTA--CAAAGCATTCATATAAAAGATAAGAATGGAGA-TTCTCATCTATATTAGGTGTGCTCTTTG-TTAATTCTTTTGTCGTTAGATAGGCTTTCCG-----AACAAATCGGAAAATTT---TC--TGTTG-----CTTTTGAAACAGGTTTTCTCACAACAT
gi|11 : tgaaatattgttaaTTT---AAAAT--GTTTATTTCCT-CATC-----GAAATTA------ACGA-----AA-AGAAAGA---GGATTTTTTTTTTTAC---------CAATT-------CCAT-TA--AGTTTTT---TGCTA----------------ACTA-TCCTA----ATCCTCTATATT-ATTTTCGTGCAAAAAAGA-------------T---CTGTTATAATACAAAATTTAATTTAAATT-----AT-T-T-TTGCATGAATTTAAAGATTC----T-CT-TCTCATCT-CAATTTATCT---
gi|12 : GTCCAGAAA---ATGAAATTTGCATTAAAATAATCCGA-GTTCCAACGTTT---AAAAT--GCTTATTTCCT-TATCAT---GAAATTA------TTAAACAATAA-AGAAAAA---AGATTGCCTGATTTATGATGGGATCTAATTT-TCAT-CCAA-TA--AGTTTTG---TGCTA----------------TCAA-TCCTG----ATGTGTTATGAT-ATATT
gi|13 : AATTTATTTCTATAGTGTG-TTACAT--TA--TAG-GCATTCATGTACACGA-AAAACTGGAGA-ATCTCGTTTATATTATGTATGCTTTTTGTTTGATTCTTGTACCGTG--TTATACTTTCCGAAAAAAAAAAATCGGAAAATTT---TC--TG
gi|16 : TACAAGATAAAAAAGGAGA-ATCTCGTCT----------------CTG-CTAATTCTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGG-TAATTT---TC--TGTTG-----TTTTTGAAACA--TTGTCTCACAACAT
gi|17 : tcCAGGGGCG-TAGC-TAGGGGGTGAT-TGAT-GAGGAAGTAAATCAAGGCA--------GGGGG-------------------------------------GTTGGTGAGTTTTCAGCATTTCT-GATACACTTAATTTT-GATTATCCAGAAA---ttaa
gi|18 : ATTT-TTAA-CCAA-TATAGGTTTTG---TGCTA----------------TCTG-TCTTG----ATGCTCTAT-ATAATTTTTG---AA-----GAAGAAAAAAA-GATA--CTGTTGCAATACAAAAATTA---TAAAT
gi|2 : aggTTTACATTTC-A-A------ACAGGGGTG-TAGC-TAGGAGGTGAT-TGAT-GTGGAAGCAAATCAAGGCA--------GGGGG------TT-------------T
gi|2 : tCT-G--ACACTTAATTTT-GAGTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAAC-TTTAAAAAAAT--GCTTA-TTCCT-CATCA---TGAAATTA--------GACA-----------AA---GGATTGCATGATTTATGATGGGATTTAATTT-TAATCCCAATTA--GTTTTTAAATTGCTA----------------TCTA-TCCTA----GCGCTCTATGAT-ATTTTTG---ATAAAAAAAAAAAAAAAA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|2 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---AAAAAAGCCAAAACAAAACAATGTACTGTTACGATACAAAAATTA---TAAATTTATAAAT-A-T-TAGTATGAATTTAAGGGATC----CACT-Tgcaaaaaaaaaaaacaaaacaaaaaagccaaaacaaaacaatgtactgttacgatacaaaaattataaatttataaatattagtatgaatttaagggatccacttattt
gi|20 : ttttacatttcaaacaggggtgtagctaggaggtgattgatgtggaagcaaatcaaggcagggggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacacttaattttgagtgtccagaaaatgagatttacattaaaataatccgagttccaactttaaaaaaatgcttattcctcatcatgaaattagacaaaggattgcatgatttatgatgggatttaattttaatcccaattagtttttaaattgctatctatcctagcgctctatgatatttttgataaaaaaaaaaaaaaaagcaaaaaaaaaaaacaaaacAGTAAAGGTCCGTTTATACAGC-A-AGTCAAAAAAGGGGTG-TAGA-TGGAGGGCGAT--GAT-GTGGACGGAAATCAAGGCA--------GGGGG------TT-------------TGGGattt
gi|21 : tgaaatCAGGGGCG-TAGC-TAGGGACTGGT-TAAT-GTGGAAGCAAATCAAGGCA--------GGGGG------T
gi|3 : gttttagcaatattcatCATGGGCGGTAGCCTAGGCGGTGATCTGAAAGTGGATGCAAATCAAGGCAAAGGGTTTGAGGGCCGTCTTTAAAGGCCCCCCAATGGGTCCGGGGGCGAAACTGGCGAGTTTTCAGCATTTTTTG--ACACTTAATTTTTGATTGTCCAGAAACAAATGA-ATTTACATTAAAATGATTCGGTGTCCCAAC--TT---AAAATATGCTTATTTCCT-CATCATTTTGAAATTA------ACGATTGATAA-AAA-------GGATTGCTTGCTTAATGATGGGATTTAATTT-TTAT-CCTA-TA--GATTTTA---TGCTA----------------TCTG-TCCTG----ATGCTCTATGAT-AATTTT----CAAGAAGAAAAAAAAAAA-GATG--CTGTTACAACACAAAAATTA---TAAATCTAT-ATT-T-T-GTGCATGAATTTAAAGATT
gi|4 : cTACAAGATAAAAAAGGAGACATCTCGTCTCTGCTACATGT---------------CTTCTGCCTTT--TTAGGCTTTCCG-----AACAAACTGG-TAATTT---TCTGTGTTG-----TTTTGAAAACA--TTGTCTCACAACAT
gi|5 : tcTTT-GATTGTCCAGAAA---ATGATATATACATTTAAAT-ATTTGA-GTT-CAACGCTT---AAAAA--GCTTATTTCCTCCATCATTTTGAAATAA------ACAATAAAT---AAAAGAA---GGA-TGCCTGCTTTATTATGGGATTTAATTTATTCT-CCAA-AA--GGTTTTG---TGCTA----------------TCTGTTTCTG----ATGCT-TATGAT-ATTTTTG---AGATATCAAAAGATAA---------CTGTTACAAT---AAAATGA---TAAATTTAT-ATT-T-TGTTG-ATGAATTTAAATATTCGCT-TATT-T------T-TAAT---TTT---TGGTGTGTTTACATAGTAATCAAAA---TCATGTGCttagttataccggagacgactgcactcattcgacaatatattgtaaaaactgtacatgtagatgctatataatattcggaatgattatcgtatatataccatgtattatatgcttcttttatatttcatttactctttaagatgtttcaatttataataatattttaaaagttttactttttgatttttttgtttttggttttgttggggtgggggtggggggggggtgaaaaacactatattgtgtacggcctatgatatagccacgcgcctg
gi|5 : CATGTGCTTTTTG-TAAATTTATTTGCCGTT--TTAGGGTTTCCG-----AATAAATAGT-T--TTTATCTC--TGTTGTTTTTTTTTTTAAACATGTT-TCTCtttttgtaaatttatttgccgttttagggtttccgaataaatagtttttatctctgttgtttttttttttaaacatgtttctc
gi|6 : tttgattgtccagaaaatgatatatacatttaaatatttgagttcaacgcttaaaaagcttatttcctccatcattttgaaataaacaataaataaaagaaggatgcctgctttattatgggatttaatttattctccaaaaggttttgtgctatctgtttctgatgcttatgatatttttgagatatcaaaagataactgttacaataaaatgataaatttatattttgttgatgaatttaaatattcgcttatttttaatttttggtgtgtttacatagtaatcaaaatTTT---TAGCGTG-TTACAT-GTA--CAAA-CATTCATGTGC
gi|6 : ACATT-CATGTGCTTTTTG-TTAATTCTTCTGTCGTT--GTAGTCTTTCCG-----AACAAATCGG-T----------------------TTTTTGAAACATGTTTTCTCACAACGTtttttgttaattcttctgtcgttgtagtctttccgaacaaatcggttttttgaaacatgttttctcacaacgttaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|7 : ttttagcgtgttacatgtacaa-G--ACACTTAATATT-GATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATGTAACGATAAATAA-AA-AGAA---GGATTGCCTGATTTATGATGGGATTTAATTT-TTAT-CCAA-AA--GGTTTTA---TGCAA----------------TATG-TCCTGATCAATGCTCTATGGT-ATTTTTG------------AAGAAAAAA-AAT---CTGTTGCAATACAAAAATTA---T----------AT-T-T-GTGCATGA-----------------ATT-TTTC-TCT-TAATTTATTT---TAGCGTG-TTACAT-GTA--Ctaaagttatatcgaagaagatgaaatcggcattattgtaaaactaaccgatgggatatttaatattcaggaattatgatcgtatatatctatatatggttcttacaaatttcattgtagtccttcaacaatgtttcaattaatcaatgtttactttttacttttgattctctctctctcttttttttttttgttggtaaaaatgatgtggaagcacttgcgtacgcctggctacgcgcctg
gi|9 : ATTGTCCAGAAA---ATGAGATTTACATTAAAATAATCCGA-GTTCCAA------------T--GCTTATTTCCT-CATCATTTTGAAATTACATATAACGATAAATAA-AA-AGAA---GGATTGCCTGTTTTATGAAGGAATTTAAATA-TTAT-CTAA-TA--GATTTTA---TACTT----------------TATG-TCCTG----ATGCTCTATGAT-ATTTTTG---A------AGAAGAACAAA-AATT--CAGTTGCATTACAAATATTA---TAAATCTAT-GATAT-T-TT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGAGACGATGCACTCATTCGACAATTATTGTAAAACTGTAAGCATTTGTACGATTTATTCCGGAAGATATCGATAATTAATACATGTATTTTAAATATGGTTCTTTTATATTTCATTTTACTTCTTTAAAATGTTTCAATTATAATAAATTATTTTTAAAGTTTTACTTTTTATTTTGGGGGGGGGGGGGCTGAAGAAAGCACTAATTGTGTACGCCTATATATAGCCACGCGCCTG
Unaligned ( gi|10 ): GAGATGATGAACTCGACAATGTTGTTAAACTAACCGATGGGATATTCAATATTCCGGAGTTACGATCGTATATTATATATAAATATGTTTTTTTTTTTAAATTTCATTTTAGTCCTCCAACAATGTTTCATTTCGTTTCTTTTTTTTTTCTTTTGGTGAAAATGATGTGGAAGCACTTGCGTACTTGCGTACGCCTAGCTACGCGCC
Unaligned ( gi|14 ): GAAATGATGATCGTATATATTTATATGGTTCTTTTAAATTCTATCTTAGTTCTTCAACAATGTTTCAATTAATCAGTATTTAAGTTTTATTTTTTATTCAATCCTGTTTTTGGTGAAAATGATGTGGAAGCACTT
Unaligned ( gi|15 ): TTTTTAAACATCTTTCCTCACAACGTTGTTAAAGAAGAATTCTACAATAGATTGTAAAACCGTGACTATAATCGATGGGATATTTATTATTCCGGAATTAGTATATATCTATATA
Unaligned ( gi|19 ): AACCGATGGAATATTTAATATTCCGGAATTAAGATCGTATGTATCTATATATGGCTCTTTTAAATATCATTTAGTCCTTCAACAATGTAATGAAAATTTT
Unaligned ( gi|22 ): TTTTTTTTTGGGGGGGGGGGGTGAAAATGACGTGGAAGCACGCGCCTAGCTACGCGCCT
Unaligned ( gi|23 ): TGATGTGGAAGCACGTGCGTACTTGCGTACACCTAACTACGCG