lowQualScore : 22222222222222222222222 11111111111111111111111111111111111 111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111 111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 4 1 4 1 44444444444444444444444 55 1 4 11 4 55555 1 22 55 2 88888888888888 4 1 4 22 4 1 2 888888888888888888 4444 66666666 4444 2222 22 66666666666666666666666666666666666 22 33 22222 222 22222222 333333 222222 11 88888888888888888888 3333 222 11 111 666666 11 5555555555555555 111 222222 1 111 1 3 2222 111 11 11 3333333333 2 1111 111 77777777777777777777 11 333333 111 1 1 3 222222 1 11 44444444 1 111 1 1 5555555 11 3333 1 1 44444 11 222222 1 111111111111111111111111111111 11 1111 1 1 33 3333333 11 1 111111 22 2222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 1111 1 333333 4 22 4 333333 11 11 4444 999999999999999999999999999999 22222 222 222 44444 11 222 111 33333333 2222 1 1 11 44444 111 2 333 22 22 44 22 2 44444 2 222 2 777777777 2 11 2 1 2 2 22 33333 2 2 2222 2 2 55555555 33 4444444 22 1 22 3333 1 222 2222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111 1 2 1 1 88888888888888888888 1 22222 1 2 333 222222 2222 1 33 666666666666666666666666666666666 44 1 1 4 111 1 1 3 44444 888888888888888888888888888888888888888888888888 3333 4 222222 11 555555555555555555 111111111111111111111111111111111111111111111111111111 3333 222222 4 77777777777777 222 11 4 444444444 1 1 3 4 22 44 44 555
lowQualScore : 0 6 6 7 0 5 6 00000000000000000000000 55 5 0 6 22 6 0 6 11111 6 6 7 33 6 55 0 11111111111111 0 0 0 11 0 5 0 555555555555555555 55 1111 77777777 3 2 5555 2 8888 77 33333333333333333333333333333333333 2 77 00 6 77777 333 77777777 6 222222 7 999999 88 88888888888888888888 1111 1 333 11 444 111111 11 2222222222222222 444 8 333333 2 0 777 0 0 0000 777 66 33 3333333333 0 0 4444 2 3 777 55555555555555555555 3 33 999999 777 0 0 0 555555 0 3 44 77777777 0 777 0 0 0 7777777 8 44 1111 0 2 0 11111 33 888888 0 333333333333333333333333333333 33 9999 0 3 0 77 2222222 33 6 111111 8 66 2222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 3333 3 111111 0 11 0 2 777777 4 77 88 2222 111111111111111111111111111111 00000 333 333 11111 88 7 333 999 77777777 8888 0 11 0 2 88 00000 4 7 777 2 0 555 77 77 77 11 66 2 2 0 99999 55 0 66 111 2 3 000000000 0 99 0 6 5 0 0 77 22222 6 0 2 0 2222 0 0 77777777 11 3 7777777 77 5 44 3333 5 111 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9999 5 0 3 3 6 7 77777777777777777777 8 3 99999 3 6 111 777777 3 7777 3 33 333333333333333333333333333333333 11 5 5 0 000 5 5 7 1 88888 888888888888888888888888888888888888888888888888 2222 999 0 0 0 222222 11 8 8 000000000000000000 0 222222222222222222222222222222222222222222222222222222 8 4444 333333 0 8 33333333333333 777 33 0 000000000 0 0 0 0 88 00 1 11 333
lowQualScore : . . . . . . . ....................... .. . . . .. . . . ..... . . . .. . .. . .............. . . . .. . . . .................. .. .... ........ . . .... . .... .. ................................... . .. .. . ..... ... ........ . ...... . ...... .. .................... .... . ... .. ... ...... .. ................ ... . ...... . . ... . . .... ... .. .. .......... . . .... . . ... .................... . .. ...... ... . . . ...... . . .. ........ . ... . . . ....... . .. .... . . . ..... .. ...... . .............................. .. .... . . . .. ....... .. . ...... . .. ....... ................................................................................................................................................................................................................................................................. . .... . ...... . .. . . ...... . .. .. .... .............................. ..... ... ... ..... .. . ... ... ........ .... . .. . . .. ..... . . ... . . ... .. .. .. .. .. . . . ..... .. . .. ... . . ......... . .. . . . . . .. ..... . . . . .... . . ........ .. . ....... .. . .. .... . ... .... ............................................................................................................................................................. .... . . . . . . .................... . . ..... . . ... ...... . .... . .. ................................. .. . . . ... . . . . ..... ................................................ .... ... . . . ...... .. . . .................. . ...................................................... . .... ...... . . .............. ... .. . ......... . . . . .. .. . .. ...
lowQualScore : 0 0 0 0 0 0 0 00000000000000000000000 00 0 0 0 00 0 0 0 00000 0 0 0 00 0 00 0 00000000000000 0 5 0 00 0 0 0 000000000000000000 55 0000 00000000 0 5 5555 5 5555 55 00000000000000000000000000000000000 5 55 55 7 00000 333 77777777 0 333333 0 000000 33 00000000000000000000 0000 0 333 00 000 777777 00 0000000000000000 000 0 222222 0 0 555 0 0 0000 555 55 22 8888888888 0 2 8888 0 5 555 88888888888888888888 2 88 222222 555 0 0 0 888888 0 2 88 22222222 0 888 0 0 2 5555555 0 00 5555 0 5 0 55555 88 222222 0 555555555555555555555555555555 88 2222 0 2 0 55 5555555 88 0 666666 0 00 0000000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7777 3 777777 0 00 0 5 000000 0 55 00 5555 222222222222222222222222222222 00000 333 333 00000 33 3 333 000 33333333 1111 0 55 0 0 33 00000 7 3 777 5 0 000 55 55 55 00 55 5 5 0 00000 00 0 55 000 5 0 000000000 0 55 0 0 0 0 0 55 55555 0 0 5 0 0000 0 0 55555555 00 0 5555555 55 0 00 5555 5 000 0000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5555 0 0 3 3 0 0 00000000000000000000 3 3 33333 3 7 000 000000 7 0000 3 77 888888888888888888888888888888888 00 0 0 0 777 0 0 3 7 88888 555555555555555555555555555555555555555555555555 5555 222 0 8 8 000000 00 0 0 666666666666666666 6 444444444444444444444444444444444444444444444444444444 0 0000 000000 0 0 88888888888888 222 88 0 000000000 0 0 0 0 33 77 0 00 777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAAACA-CTATNACNNTNCAATACCGTCANNAAAAGCCAATTCTTAGGGAGAGTTTCTAAAANGGNTTGTCCGAAGNCTNNNGAACGATTAGTTGGAAATNCCAATTTACCCTNGCTGCAGCGATCGAGAGTNATCAGACACCTGTANTAAGCTTGAT--ACAAAGG---ATGT---TG---TCGATTCAGACAGTAG-CTACCATCGATAC-TTA--AGAGAT--ATTGGAGCAAA-GCA---A---------TATACCGA-G-TTCTT---AGAC--AGGATCA---CAAATGAG--GGGCAAC--TTGACTTAT--T--ATG------ATC---CTATCA-AAA-G----AATAA-CTTC---CCTTTA-TTCAGCC---GAA---AAGCGAAACCAAA-TCCTGGAT-CG-T-----CGACAAGAAAAGCT-T--CATCNATT---GAAAA--ATGAT-----TGCGT--TACCTGT--TTTCTAG----GCT---TTTC-ATT-TCCTGCCAA-AGCA-GA-CAGTGCGATA-T------GGAAG-ATN--TTTTCAGT-CA-TCGAAA-TTCC-AAA-ATCACCCCTC-CTTC-ATTNTCACAG-GATN--G-GA--ACTG-TATTACACC-GGG------------------AGT-------TGA--TG--GAAT-GTA-TTCGAAG--CAAACGT-------TGA--TGTTCCAGCAAA-G-AGAT-CCAG-ATTC--T----GAAGCC----TTC---AT-NATT------GATGGCGC----------------AG-GATGGTGGATTCAAAATCACCANAAGA-CT--A-----AG-ACATT---TG-A---CTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCCA-TACA--TAAGACTCC--TGTTTGAGCTACTGAGTACATGCNTTCACGGGTAGTATAATATTGCTCTCGTCTGATACCTGAGGGAGTGTAAACTAACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----G-AGAGGCCCTGGTGTTAGGCGTAAGGTGGTTGGAACAAGNATAAAAACACCNAAGNATTGGGACAACGTGCTTTCTCTTACCAGACATCGNACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AAGTCAGC--TGATTTTGACC---ATTGAGA--TCA---ACAGACAAGTATT-T--TA-ACTCTG-GGTGAAAATGTC--CTAA-C---AACGCAAATGTA-A-CACTACGCTNTTGTTATCCCCTTGGATAACCCCACGAAGAAGCTGACNNAGGAATNTTNATTCCACGTCNCAAGCATNNTGACAGTCAATGGTNNTAAGGCTGTTTNCATTGTACAGNAAACAGTATACTGAATGTTGTNGCGTTTTAGCAGTTTCGGACCTTTTGCACAACTTGGCTTAGATAGAATTTGTGGATANGTTTATGGCCGAAANAAAAGACTTTTCGCTGGCCCCCCGACANTCGNAGATATTGGAGCATTCTTTGGGGATTCCGGTCTCTGCNCTNCCGCCCTCTTTCCGGCACGCTTTTACNTGGATGTNAATTACTGTGTCAGACATTTCGTAGTCAGACAGTGAGGANGCAAGGGAAAANAAAAAAAAAAAAAAACCAGGTTCGCCATGGGCATCAGACCATGGGGATGTTTCANAGACGGCTTACANAAGTCATTCATCTCTTTCACGCNCCTCTGGGCATCAGACAACCCTGTATATCGGATANNTCCAGAAGNTGACATTGGACGATC-CTG-GAGGCC------T-T-TGTGCGCA--TTTTATATGACAG-GGCAAC-TCTACA-TTTGCGGTC-AATGAGGCACGCTTTGAATTGTT-CGCAA--G-AAA-CAACG--CCCTCGAT-GCTATCCCCCCCCCCNACNAGACTAGAA-ATGCTTTACTCCAGCACATCAAGAGGGCANCATTNCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGT-A--------TTACA---------------GAC-----CTAGTC----CTGAACACTG---GGNGTTGGG-TGAAAGACAAAGGC-G----ATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGC-GT---CCTGTACA---GAACTTTT-GAAATGTG---GTTG-CAAAAA--ATCAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-TG-G-ACTTCCATGTA-CAGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTAATGAAG-TTCACCTTATTAC-GACCATCTGATGCAATGCG-CCTTAA---GAAAA
Reference ( gi|1 ) : ATTACGCAAGATGGCTTCTAATACATGTGCGGGATATGCGTCGATTCACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTT-CAGTAAGTCCTTGCGAAGACGAC-AACACCCATGACGATCAAATAACGTCACAAAAAGCT--TTCTTAGGGAGG-----T-AAAAGGCTTG-C--AAGGC-GTTGAACGATT--TTGGAAATGC----TT--CCTTG----AG-------G-GTGATTAGAC--CTGT-CTAAGCTT-AT--ACAAAGG---ATGT---TG---TCGGTTCAGACAATAA-CTACAATCGATAC-TTA--AGAGAT--ATTGGAGC-AA-GC----A---------TATACCGA-GCTTTTT---AGAC--AGGATCA---CAAA------GGACAAC--CTGACTT----T--ATG------ATT---CTATCA-AAA-G----AACAA-CTTT---CCTTTA-TTC-GCC---GAA---AAGCAGAACCAAA-TCCTGGATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-TATAAT-----TTCAT--TACTTGT--TTTCT-G----GCT---TTTC-ATT-TCCT-CCAA-A-CA-GA-CAGTGCCGTACT------GGAAG-ATA--TTTTCAGT-CA-TCAAAAATTCCAAAA-ATCACCCCCT-ATTC-ATTGTCACAG-GAT---G-GA--ACT--TATTACACC-G--------------------AGT-------TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT-------TGA--TGTT-CAGCAAA-G-AGAT-CCAGTATTC--T----GAAGCC----TTC---AT-AATT------GATGGCAC----------------A----------ATTCAAAACCACCACGAGA--C--A-----AG-ACATT---TG-A---CTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCC--TACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---AATAT-GTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----G-AGAGGCCCTGG-GTTACACGTAAGGTGGTTG-AACAAGCA-AA---CACCAAAGCATTGGAACA----GCTTTCTTT----AGA----AGACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---A-GTCAGC--TGATTTTGACC---ATTGAGA--CCA---ACA--CAAGTATT-T--TA-ACTCTG-GGTGGAAATGTC--CTAA-C---AATGCAAATGTA-A-CACTATGCTGT-GTT---CCCTTG--TAACC--ACGA-TAAGACGACTCAAGAATGTTGATTC-ACG-CT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACA-TA--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACCTTT-GCACAACTTGGCTTAGATAAA--TTGTGGATATA-T-ATAGTCG-AACAAA-GAC-TT-CGCTGG-TCCC-GATAC-CAT---TATTGGAGCATTCTTTGGGGATTCCAGTCTCTGCATTA-CA---TTTTTTC--CACGCTTTTACA-GGAT-TG-ATTACTGTATCAG-CA-TTCG---------AG---AGA---AAGGGAAAAAA---------------CAG------CATGA----CAGA-C-TGGA-ATGCTTACCAGACG--CTACAG-AGT-ATTCAGCTC------GCG-TT---GACAT--GACA--C-TGTATTTCG----TTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAGAC------TGT-TGTGT-C---TTTAATATGACAG-GGCGAT-TCTACA-TT-GCGGTC-A-TGAGGCACGCTTTGAA-TGGT-CGCAA--G-AAA-CAACG-GCCCTCTATGGCTA---CTTCCCCCCACT-G------A-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGT-A--------TCA-----------------GAC-----CAAGTC-GGTCTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGC-A----ATGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GC-GT---CCTG-ACA---AAAC-TTT-GAAATGTG--TGTTG-CAAAAA--A-CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--G-ACTT---TGTAACAGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-ATGAAGCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTGAAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAAACA-CTATGACGTTACAATACCGTCACAAAAAGCC--TTCTTAGAGAGA-----TAAAAAGGCTTGTC--AAGCC-TGTGAACGATT--TTGGAAATCCT---TT--TCTAG----AG-------GAGTCATCAGAC--CTGT-ATAAGCTTGAT--ACAAAGG---ATGC---TG---TCGATTCAGAC-ATAG-CTACCATCGATACTTTA--AGATAT--ATTGGAGCAAA-GCA---A---------TATACCGA-G-TTCTT---AGAT--AGGATCA---CAAATGAG--GGGCAAC--CTGACTTATTCT--ATGATCATAATT---ATAAAA-AAA-G----AATAA-CTTT---CCTTTA-TTCAGCC---GAA---AAGCGAAACCAAA-TCCTGGAT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA--ATGAT-----T--AT--AATCTGT--TTTCT-A----GCT---TTTC-ATT-TCTTGCCAA-AGCA-GA-CAGTGCGATA-T------GGAAG-GTT--TTTTCAGT-CA-TGAAAA--TC--AAA-AT-ACTCTTC-CTTC-ATTGTCACAG-GATG--G-GA--ACT--TA-TACACC-GGAGACTCCGAGTAAAGCCTCAGT-------TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT-------TGA--TGTTCCAGC-AA-G-AGAT-CCAG-ATTC--T----AAAGCC----TTTAAAAT-TATT------GATGGCGC----------------AGCGATGATGGATTCAAAACCACCACAAGGATCA-A-----AG-ACATTTGATG-A---CTA------TG-----CAAA---AGA-TG--TTA-------TTCT-GCCA-TACA--T-AGACTCC--TGTTTGA
gi|19 : -TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : GAAGAT-AC-AACA----TTACCATC------CGTCAACAAAAG-TAATTCTTAAGGAGAGTTTCT-AAACGGATTA-TCGAAGGCTGTGAAACGATTAGTTG---ATACCAATTTACCTTTGCTGCAGCGATCGAA-GTGATTAGACACCTGTATTAAA--T-ATGAACAAAGGCAAATGTATATGAAATCGATTCAGACA-TAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGC-AAAGC----AAAGCGAACTCAGACCGAAGTTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGACCTATA-T--ATGT-----ATCGCACTTTCACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGC-GAACCAG--TCCTAGAT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA--ATGATGGATATGCA----ATCTGTCATTTCTAG----GGTATGTTTC-ATTATACT-CAAG-A-GG-GAACAG--CTGTACTTGATTGGAAAGCATAACTGTTCAGTACT-TCAAA--TTCC--AA-ATTATTCCTTCCTTCAATTTTCACAG-GACTGAG-GAACACTGACATTACACC-G--------------------GATATGTGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGACTGA--TACA-CAGCAAACA-AGCTCCCAGGATTCCTC----GAAGAA----ATC---ATCAATT------GAT-GCACAAAGACAGAGGTGTTGA----------ATTCAACA-CACCATGAGA--TCAA-----AG-ACATC---TGAA---ATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCA-TAAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATAATAT-GCTCTCGTCTGATACCTGAGGGAATGTAAACTAACAG--ATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGG-AGAG
gi|16 : CTTGAT--ACAAAGG---ATGT---TG---TCGATTCAGACAG-AG-CTAACATTGATTC-T-----GAGAT--ATTGGAGCAAA-GCAATTA---------TATACCGA-GA-TCTT---GGAC--AGGATCA---CAAA------tggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|10 : AC--AGGATCA---CAAATGAG--GAACAAC--CTGACTT----TT-ATG------ATT---CTATCA-AAAAG----AACAA-CTTT---CCTTTA-TTCAGCC---GAA---AAGCGAAACCAAA-TCCTGGAT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA--ATAAT-----TT-GT--TACTTGT--TTTCTAG----GCT---TTTC-ATT-TCCTGCCAA-AGCA-GA-CAGTGCGATA-T------GGAAG-ATA--TTTTCAGT-CA-TCAAAA--TC--AAA-ATCAtg
gi|20 : C--AGGATCA---CAAATGAG--GGGCAAT--TTGACTTC---T--ATG------ATC---CTATCA-AAA-
gi|3 : AG------GGGCAAT--TTGACTT----TCTATG------ATC---CTATCA-AAA-ACAGTAGTAA-CTTC---CTTTTA-TTC-GC----GAACAAAAGCGAAACCAAAATCCTGCTAACG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAAATTTACT-----TGTGTAATACT-GC--TTTCC-ATAGAGCT---TTTCCATT-TCTTGCCAACG-CATGA-CAGTGCGATA-T------AGAAG-ATT--CTTTCAGT-CAATTGAAAAT--CAAAATACC-CCTCCG-CTTC-ATTTTCACAGTGAT---AAGA--ACCG-TAT-ACACC-GGG------------------AGT-------TGAAATG--GAATCGTAATTCGAAGCTCAAACGT-------TGAAATGTT-CCATAAA-GGAGAT-CCAGT--TC--T----GAAGTCCTTATTCT--AT-GATGCGAGAAGATGGTG-----------------A----------ATTCAAA-TCACCA-AAAA--T--ATCTAAAGTACATT---TG-ATTACTA------TAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---A-TATTGTTTTC-----AT----------GTGTA-AT---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA----GGAGAGGTCCTGGTGTTAGGCGTAAGGTGATTGGAACAAGCA-AAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAA-GTCAGC--TGATTGTGACG---ATTGAGA--TCA---ACAGATAAGCATTCT--TGTACCACGTGGTGAAAATGTCGCCTAA-CGCAAAAGCAA-TGTA-AACACTACGCTTT-GTTATCCTCTTGGATAACCCCACGA--AAGCTGACAAAGGAATTTTTATTCCACG-CCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACA-GAAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGCACAACTTGGCTTAGATAGAATTTGTGGATAGG-TTATGACCG-AAAAAAAGAC-TTTCGCTGG-CCCCCGACAA-CACAGATATTGGAGCAT-CTTTGGGGATTCCGGTCTCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTTCG---------AG---GGAGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACC-TGG----------CAGATG--TTACAGAAGT-ATTCA-CTC------GCGCTT---GGCAT--GACAACC-TGTA--TCG----ATTTCAGAAGATGACATT-GA-GATC-CTG-GAGGCC------T-T-TGTGTGCA--TTTTATATGACAG-GG-AA---CTACATTT-GCGGTCAA-TGAGGCACGCTTTGAATTGTT-CTCAAAGA-AAA-CAACGCACCTTCGAT-GCTATCCCCCCCCCCCACG-GACTAGAA-ATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACA--TAATGGAGC--AGATGTGACATGT-A--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGC-G----ATGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGC-AT---CATG-TCA------------------------TTG-CAAAAA--ATCAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-TG-G-ACTTCCATGTA--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTAATGAAG-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---GAAAAag
gi|14 : AAA-AT-ACCCCTC-CTTC-ATTGTCACAG-GATA--G-GA--ACT--TA-TACACCGG--------------------ATT-------TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT-------TGA--TATTCCAGC-AA-G-AGAT-CCAG-ATTC--TGATCGAAGCC----TT
gi|18 : TC-CAGTAA--G-AGAT-CCAG-ATTC--T----GAAGCC----TT----AT-CATT------GATGGCGC----------------AGAGATGGTGAATTCAAAATCACCAAAAAATCT--A-----AG-ACATT---TG-A---TTA------atc
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----G-AGAGGCCCTGGTGTTActat
gi|2 : GGTTGGAACAAGAATAA---TACTTAA-CAT--GGACAACGTGCTTTTTTT-----GA----ACATAGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT---AAGTCAGCGCTGA-TTTGACCAGTATTCGGAATTCAATTATA--CAAGTCTC-TCGTA-ACTTTC-GGTGGgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|6 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaCAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AAGTCAGC--TGATTTTGACC---ATTGAGA--CCA---ACAGACAAGTATT-TG-TA-ACTCTG-GGTGAAAATGTC--CTAA-CC--AATGCAAATGTAGA-CACTATGCTGTTGTT---CCCTTG--TAACC--ACGAAGAAGCTGACTCAAGAATGTTGATTC-ACGTCA--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTG-TACGTTTT-GCAGTTTCA-ACCTTT-GCACAACTTGGCTTAGATAAA--TTGTGGATATATT-ATGGTCGAAACAAA-GACTTT-CGCTGGCTCCC-GATACTCGA---TATTGGAGCA-TCTTTGGGGATTCCAGTCTCTGtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|21 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--TA-ACACTG-GGTGAAAATGTC--CTAACC---AACGCAAATGTA-A-
gi|2 : tgCTCTGCACTT-CGCCCTCTTTTCGGTAC-CTTTTATTTGGAT-TC-AT-ACTGTATCAGACA-TTTGTAGTCAGACAGTGAAGAC--AAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGA-CATGGGGATGTTTCAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCC-CTCTGGACATCAGACA--CCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGTTTAGTATATGTGC-CAAATTTAGTCTGACAGAGGCAAa
gi|17 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcaATC-CTG-GAGGCC------T-T-TGTGTGCA--TTTTATATAACAG-GGCAACGTCTACA-TTTGCGGCC-AATGAGGCACGTTTTGAATTGTT-CGCAA--GAAAA-CCACG-CCCCaatatcta
gi|13 : T-TCTACA-TTTGCGGTC-AATGAGGCACACTTTGAA-TTGTTCACAA--G-AAAACAACG--CCCTC----------------CCCGACTAG------AGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|7 : c-ATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTAA--------TCA-----------------GAC-----AATGTCGGGTCTGAACACT----GGGGTTGGG-TGAAAGACAAAGGC-A----ATGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGC-GT---CCTGTACA---GAACTTTT-GAAATGTG---GTTG-CAAAAA--ATCAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-TG-G-ACTTTTATGT-ACAGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTAATGAAG-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA-GTAAAAA
gi|8 : agTGGAGCCAAGATGTGACATGT-AATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---GTG-TTGGG-TGAAAGACAAAGGC-G----ATGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGC-AT---CATG-TCA------------------------TTG-CAAAAA--ATCAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T--GGACTTCCATGTA-CAGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTAATGAAG-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---GAAAA
gi|12 : gaaC-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCGA----ATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGC-AT---CCTGTAAA---GAACTTTT-GAAATGTG---GTTC-CAAAAA--ATCAAATTGTG------TTGG-TAACTGT-TAAa
gi|5 : TCGGG-TGACAAACAAAGGC-AGCCCGTAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGC-ACAGTCTCCCTG-ATAAAGAAAT-TTTAGAAATGTGAAGGTTGACAAAAAATA-CAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGG-ACTTCTATGTACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCT-AT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 2 2 11 55555555555555 22 2 1 1 1 11 1 777777777 2 2 1 444 444444 444 2222 33 111111111111111111111111111 111 22 111 111 111 22 11111 11 4444444444444 1 1 2222 111 2222 2222 1111 111 2222222 22222 2 11 111 11 33333333333 11 11 111 1 1111 11 111 11 22 1 11 111 11 22 11 77777777777777777777777 11 11 1111 11 111 11 1111111 2222 1 5555555555 3333333 11 111 222 3333333333333 111 1 11 3333333 1 11 11 11 44444 666666666 333 2 000000000000000000 3333333 2 2 1 3333 11 222222 4444 5555555555555 111 1 111 11 111 111 11 11 111 11 1 2222 33333333333 11 11 222222222222 1 1 22 3333 1 333 11 1111 1 2 444 2 1 444 22 2 22 33 1 1 1 11 4444444444 11 33 55555555 333 111 333333 1 4444444 11 22 2222 11 11 11 4444444 222 22 22 2 9999999999999999999999999999999999999999999999999999999999999999 4444444444444444 33 22 2 1 7777777777777777777777777777777777777777777777 22 1 1 1 2222222 2222 1 22 1111 1 1 11 888888888888888888888888 1 11 0000000000000000000000000000 22222 3333 111111 2222 2222222222222222 22222222222 333333333333333333333 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 0 4 0 3 77 22222222222222 77 2 0 5 5 5 4 4 88 5 999999999 6 7 11 0 6 2 0 0 5 1 22 1 7 22 222 222222 88 1 555 1 3333 00 6 1 777777777777777777777777777 1 0 333 11 2 3 777 777 777 22 2 88888 33 3 8888888888888 0 0 1111 99 111 99 99 7777 6 5555 99 6 6 7777 8 444 8 3 1111111 3 88 8 8 88888 3 99 1 444 8 11 00000000000 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 77 00 6 7 6 11 8 1 8 999 11 88 11 99999999999999999999999 8 11 11 11 0000 99 444 11 8 8 6 7 88 99 6 6666666 0000 99 8 0 6666666666 3 4 0 6 1 8888888 11 444 222 3333333333333 777 0 33 2222222 0 33 33 66 33 00000 222222222 0 777 3 0 0 111111111111111111 4444444 6 0 0 0 1111 22 3 33 6 999999 1 77 7 0 4444 0 3333333333333 444 0 777 3 33 777 777 33 3 33 3 777 33 0 55 0000 8 8 8 88888888888 11 99 8 666666666666 6 8 6 0 66 1111 0 222 77 9999 0 22 0 1 1 3 999 22 3 22 7 1 2 999 22 3 77 44 0 11 5 0 3 0 33 3 6666666666 33 1 11 2 11111111 888 777 555555 0 2 9999999 33 44 1111 33 33 33 11 3333333 0 888 6 44 22 1 7 7 0 3 7 6 1111111111111111111111111111111111111111111111111111111111111111 6666666666666666 00 44 3 5 6666666666666666666666666666666666666666666666 0 1 6 22 0 0 0 6666666 88 0000 4 0 2 22 3 3 3 0 7777 0 0 33 555555555555555555555555 7 3 0 3 1 3 8 00 1 3333333333333333333333333333 00000 1 1111 666666 6 0000 99 6 6 4444444444444444 44444444444 666666666666666666666 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 3 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . .. . . .. ... ...... .. . ... . .... .. . . ........................... . . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. .... . .... .. . . .... . ... . . ....... . .. . . ..... . .. . ... . .. ........... . .. .. ... ... . . . . . .... .. .. ... . . .. .. . . . .. . . . ... .. .. .. ....................... . .. .. .. .... .. ... .. . . . . .. .. . ....... .... .. . . .......... . . . . . ....... .. ... ... ............. ... . .. ....... . .. .. .. .. ..... ......... . ... . . . .................. ....... . . . . .... .. . .. . ...... . .. . . .... . ............. ... . ... . .. ... ... .. . .. . ... .. . .. .... . . . ........... .. .. . ............ . . . . .. .... . ... .. .... . .. . . . . ... .. . .. . . . ... .. . .. .. . .. . . . . .. . .......... .. . .. . ........ ... ... ...... . . ....... .. .. .... .. .. .. .. ....... . ... . .. .. . . . . . . . ................................................................ ................ .. .. . . .............................................. . . . .. . . . ....... .. .... . . . .. . . . . .... . . .. ........................ . . . . . . . .. . ............................ ..... . .... ...... . .... .. . . ................ ........... ..................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 0 0 0 0 55 00000000000000 55 5 0 5 0 5 0 0 55 5 000000000 7 3 77 7 7 5 0 0 5 0 00 0 3 00 777 000000 33 0 000 0 3333 33 7 0 000000000000000000000000000 0 7 000 33 5 2 555 555 555 55 5 00000 88 2 0000000000000 0 0 2222 22 777 22 22 5555 7 8888 22 7 7 0000 0 000 0 8 2222222 8 88 0 0 00000 2 00 0 000 0 00 66666666666 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 66 66 7 7 7 00 0 0 0 888 00 00 44 22222222222222222222222 0 00 00 66 0000 00 000 00 0 0 7 3 33 22 7 8888888 4444 00 0 0 2222222222 2 6 8 8 0 0000000 00 000 000 0000000000000 555 0 88 5555555 0 22 88 55 88 00000 000000000 7 777 7 7 7 333333333333333333 7777777 7 0 0 0 2222 88 2 88 7 000000 0 77 3 7 0000 7 3333333333333 000 0 555 2 88 555 555 88 2 88 2 555 88 0 88 0000 0 0 0 00000000000 00 00 0 666666666666 0 0 0 0 22 0000 0 888 55 0000 0 00 7 0 0 3 000 00 7 00 3 0 3 333 00 7 55 88 2 88 5 0 2 0 88 2 5555555555 88 0 22 0 88888888 555 555 222222 0 0 0000000 88 88 2222 88 88 88 77 3333333 7 333 7 77 33 0 3 3 7 7 3 7 0000000000000000000000000000000000000000000000000000000000000000 3333333333333333 00 77 3 3 3333333333333333333333333333333333333333333333 7 0 7 33 0 0 0 0000000 55 8888 0 0 5 00 2 2 2 2 8888 0 0 88 000000000000000000000000 3 2 8 2 0 2 0 66 4 5555555555555555555555555555 00000 4 0000 000000 7 8888 22 7 7 0000000000000000 00000000000 555555555555555555555 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 5 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCC--TTCTTAGGGAGAGT---TAAAAAGGCTTGTC--AAGGCTGTTGAACGATT--TTGGAAATNC---TTT--CCTTG----AG------AGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGACTT-T--TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---G---AAAAGCGAAACC-AAATCCTG-GAT-CG-----TCGA-AAGAAAAGCT--TCGTCAATT---GAAAA-A--TAAT---T-CGT--TACCTGT--TTTC--TAG-GCT---TTT-CATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-C-ATC-GAAATTCC-AAAATCA-CCCCTC--CTTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TG--ATG--GAAT-GT-ATTCGAAGC-CAAACGT---TG--A-TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATGGCGCA-------GA-GATGGTGAATTCAAAACCACCACGAG-ATCT--AAG--ACATT---TGA--ACTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCCA-TACA--TAAGACTCC--TGTTTGAGC-AC-GAGTAC---CAT---CGGGTAG---AATA-TGTTTTCGT--GATA---------GTGTAAACT-ACGGAGATAGTCTCAA-AGCA-AATACC-AGGACAAAG---GAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCA-AAAAACACCAAAGCATTGGAACA----GCTTTCTTT-A--AGACAT-GGACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCA--GCTGATTTTGACC---ATTGAGA--CCAA-CAGACAAGTATT-T--TA-ACTCT-G-G-----------GTGAAA--ATGT--CCT-AACC---AAC----GCAAATGT-AGAC-ACTACGCTGTTGTT-ATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATT-CACG---CAAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG---ACAG-ATACTG-ATGTTGTAGCGTTTT-GCAGTTTC-GACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATG-TTATGGTCGAA-----ACAAAAGAC--TTT---CGCTG---G-CCCCC-GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTAC-GC-CTTTTTCC--CACGCTTTTACA-GGAT-TCGATTACTGTATCAG-CATTTCG-AG--AGA------GGA--CAAGGGAAAAAA---------------CAG------CATGA----CAGACC-TGGGGATGCTT--CAGACG--TTACAG-AGT-ATTCA-CT------CGCGCCT-T-GACAT--GACA--CCTGTGTATCG----TTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-G--CCCTC-AT-GCTACCCCCCCCCCC-----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----ATGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-TA-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATNACNNTNCAATACCGTCANNAAAAGCCAATTCTTAGGGAGAGTTTCTAAAANGGNTTGTCCGAAGNCTNNNGAACGATTAGTTGGAAATNCCAATTTACCCTNGCTGCAGCGATCGAGAGTNATCAGACACCTGTANTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACAGTAGCTACCATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--TTGACTTAT--TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTC---CCTTT-ATTCAGCC---G---AAAAGCGAAACC-AAATCCTG-GAT-CG-----TCGACAAGAAAAGCT--TCATCNATT---GAAAA-A--TGAT---TGCGT--TACCTGT--TTTC--TAG-GCT---TTT-CATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-C-ATC-GAAATTCC-AAAATCA-CCCCTC--CTTC-ATTNTCACAG-GAT--NGGA--ACTG-TATTACACCGG----G------------------AGT-TG--ATG--GAAT-GT-ATTCGAAG--CAAACGT---TG--A-TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATGGCGCA-------G--GATGGTGGATTCAAAATCACCANAAG-A-CT--AAG--ACATT---TG---ACTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCCA-TACA--TAAGACTCC--TGTTTGAGCTACTGAGTACATGCNTTCACGGGTAGTATAATATTGCTCTCGTCTGATACCTGAGGGAGTGTAAACTAACGGAGATAGTCTCAA-AGCA-AATACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGNATAAAAACACCNAAGNATTGGGACAACGTGCTTTCTCTTACCAGACATCGNACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCA--GCTGATTTTGACC---ATTGAGA--TCAA-CAGACAAGTATT-T--TA-ACTCT-G-G-----------GTGAAA--ATGT--CCT-AA-C---AAC----GCAAATGT-A-AC-ACTACGCTNTTGTT-ATCCC-CTTGGATAACCCCACG-AAGAAG-CTGACNNAGGAATNTTNATTCCACGTCNCAAGCATNNTGACAGTCAATGGTNNTAAGGCTGTTTNCATTGTACAGNAAACAGTATACTGAATGTTGTNGCGTTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATANGTTTATGGCCGAA-----ANAAAAGAC-TTTT---CGCTG---GCCCCCC-GACANTCGNAGATATT--GGAGCATTCT----TTGGGG--ATT--CCGGTC--TCTGCNCTNCCGCCCTCTTTCCGGCACGCTTTTACNTGGATGTNAATTACTGTGTCAGACATTTCGTAGTCAGACAGTGAGGANGCAAGGGAAAANAAAAAAAAAAAAAAACCAGGTTCGCCATGGGCATCAGACCATGGGGATGTTTCANAGACGGCTTACANAAGTCATTCATCTCTTTCACGCNCCTCTGGGCATCAGACAACCCTGTATATCGGATANNTCCAGAAGNTGACATTGGACGATC-CTG-GAGG-CCT-T-----TGTGCGC---ATTTTATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-G--CCCTCGAT-GCTATCCCCCCCCCCNACNAGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCANCATTNCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTC----CTGAACACTG---GGNGTTGGG-TGAAAGACAAAGGCG----ATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-TACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT--TTCTTAGGGAG-GT-----AAAAGGCTTGC---AAGGC-GTTGAACGATT--TTGGAAATGC----TT--CCTTG------------AGGGTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGACT--T--TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---G---AAAAGCAGAACC-AAATCCTG-GATACG-----TCGA-AAGAAAAGCT--TCGTCAATT---GAAAATA--TAAT---TTCAT--TACTTGT--TTTC--T-G-GCT---TTT-CATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-C-ATCAAAAATTCCAAAAATCA-CCCCCT--ATTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TG--ATG--GAAT-GT-ATTCGAAGC-CAAACGT---TG--A-TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATGGCACA------------------ATTCAAAACCACCACGAG-A-C---AAG--ACATT---TG---ACTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCC--TACA--TAAGACTCC--TGTTTGAGC----AAGTAC---CAT---CAGGTAG---AATA-TGTTTTC----GATA----------TGTACAT--ACAGA-ATAGTCTCAA-AGCA-AATACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC----AAACACCAAAGCATTGGAACA----GCTTTCTTT----AGA----AGACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--T-AGTCA--GCTGATTTTGACC---ATTGAGA--CCAA-C--ACAAGTATT-T--TA-ACTCT-G-G-----------GTGGAA--ATGT--CCT-AA-C---AAT----GCAAATGT-A-AC-ACTATGCTG-TGTT----CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATT-CACG---CTAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT---ACA--ATACTG-ATGTTGTTACGTTTT-GCAATGTC-AACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA--TATAGTCGAA-------CAAAGAC---TT---CGCTG---G--TCCC-GATAC-CAT---TATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTA---CATTTTTTC---CACGCTTTTACA-GGA--TTGATTACTGTATCAG-CA-TTCG-AG--AGA------------AAGGGAAAAAA---------------CAG------CATGA----CAGACT---GGAATGCTTACCAGACG--CTACAG-AGT-ATTCAGCT------CGCG----TTGACAT--GACA---CTGTATTTCG----TTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGG--CCCTCTATGGCTACTTCCCCCC--------ACT--GAATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----ATGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG--ACAAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGACTT-T--TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---G---AAAAGCGAAACC-AAATCCTG-GAT-CG-----TCGA-AAGAAAAGCT--TCGTCAATT---GAAAA-A--TAAT---T-TGT--TACTTGT--TTTC--TAG-GCT---TTT-CATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-C-ATC-AAAAT--C-AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCGA---ATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAAAGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-G--CCCTC----------------CCC-----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct-AAAAT-A-CCCCTC--CTTC-ATTGTCACAG-GAT--AGGA--ACT--TAT-ACACCGG-----------------------ATT-TG--ATG--GA-T-GT-ATTCGAAG--CAAACGT---TG--A-TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-G--CCC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATGGCGCA-------GA-GATGGTGAATTCAAAATCACCAAAAA-ATCT--AAG--ACATT---TG---ATTA------c
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTActat
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGT-AATTCTTAAGGAGAGTTTCTAAA-CGGATTATC-GAAGGCTGTGAAACGATTAGTTG---ATACCAATTTACCTTTGCTGCAGCGATCGA-AGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGACCTATA-TATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATA---AAAGGCG-AACC--AGTCCTA-GAT-CGA----TCGATAAGAAAGCCTA-TAATTCATTTCGGAAAA-A--TGATGGATATGC--AATCTGTCATTTC--TAG-GGTATGTTT-CATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTAC-TTC--AAATTCC--AAATTATTCCTTC--CTTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCG--ATGGAGAAT-A--ATTCGAAG--TAGACGTATCTG--ACTGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGAT-GCACAAAGACAGA--GGTGTTGAATTCAACA-CACCATGAG-ATCA--AAG--ACATC---TGA--AATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCA-TAAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATAATA-TGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAATACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAGAATAA---TACTTAA-CAT--GGACAACGTGCTTTTTTTGA----ACAT-----AGTGGAACTAACCTGAAAACGT-ACT--TTTCTATAGTATATTTC--TAAGTCAGCGCTGA-TTTGACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCG-GTGGTGTGGCCAGTGAAATCATATG-CCTAAA-T---AGCTATTGGTAATGT-AGACTACTACGCAA--GTTCATCCCTCTT--CTAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaTGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTTC-GCCCTCTTTTCGGTAC-CTTTTATTTGGAT-TCA--TACTGTATCAGACATTT-GTAGTCAGACAGTGAAGA--CAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGAC-ATGGGGATGTTTCAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGC-CCTCTGGACATCAGACA--CCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGACTT-C--TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT-G-G-----------GTGAAA--ATGT--CCT-AACC---AAC----GCAAATGT-A-Aag
gi|3 : tgAGGGGCAAT--TTGACTTTC--TATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CGTGTGTTTGACAAGAAAAACCTATCATCTATT---GAAAA-ATTTACT---TGTGTAATA-CTGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAAT-C-AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TA-TACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAA-TG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGAT-GCG-A-------GAAGATGGTGAATTC-AAATCACCAAAAATATCT--AAAGTACATT---TGATTACTA------TAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TA--ACTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG----ATATTGTTTTCAT---------------GTGTAA--T--CGGAGATAGTCTCAACGGCAGAGTGCC-AGGGCAAAG---GAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCA-AAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCA--GCTGATTGTGACG---ATTGAGA--TCAA-CAGATAAGCATTCT--TGTACCAC-GTG-----------GTGAAA--ATGTCGCCT-AA-CGCAAAA----GC-AATGTAA-AC-ACTACGCT-TTGTT-ATCCT-CTTGGATAACCCCACG-A--AAG-CTGACAAAGGAATTTTTATTCCACG-CCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGG-TTATGACCGAA-----A-AAAAGAC--TTT---CGCTG---G-CCCCC-GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTTCG-AG-----------GGAGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACC-TGG----------CAGATG--TTACAGAAGT-ATTCA-CT------CGCGCTT---GGCAT--GACAACC---TGTATCG----ATTTCAGAAGATGACATTGA--GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACG-GACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----ATGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C--------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC--TTCTTAGAGAGA-----TAAAAAGGCTTGTC--AAGCCT-GTGAACGATT--TTGGAAATCC---TTT--TCTAG----AG-------GAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATTCTATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---G---AAAAGCGAAACC-AAATCCTG-GAT-CG-----TCGA-AAGAAAAGCT--TCATCAATT---GAAAA-A--TGAT---T--AT--AATCTGT--TTTC--TA--GCT---TTT-CATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-C-ATG-AAAAT--C-AAAAT-A-CTCTTC--CTTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TA--ATG--G-AT-GT-ATTCGAAG--CAAATGT---TG--A-TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATGGCGCA-------GC-GATGATGGATTCAAAACCACCACAAG-G-ATCAAAG--ACATTTGATG---ACTA------TG-----CAAA---AGA-TG--TTA-------TTCT-GCCA-TACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCGTAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAAAGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AATACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCA--GCTGATTTTGACC---ATTGAGA--CCAA-CAGACAAGTATT-TG-TA-ACTCT-G-G-----------GTGAAA--ATGT--CCT-AACC---AAT----GCAAATGT-AGAC-ACTATGCTGTTGTT----CC-CTTG--TAA--CCACG-AAGAAG-CTGACTCAAGAATGTTGATT-CACGT--CAAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGT--ACAG-ATACTG-ATGTTGTA-CGTTTT-GCAGTTTC-AACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TTATGGTCGAA-----AC-AAAGAC--TTT---CGCTG---G-CTCCC-GATACTC---GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----ATGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT---GT-----TGCAGCGT---CCTG-TACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----ATGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C--------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 11111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 4444444 1 11 2222 2222 11 55555555 111 11 111 111 111 22 11111 11 555555555555 1 1 2222 111 111 111 2222 1111 111 111 111 22222 1 11 111 11 3333333333333 11 11 111 1 1111 11 111 111 1 11 111 11 22 11 77777777777777777777777 11 1111 22 111 11 1111111 2222 1111111 111 11 4444444444444444444 111 1 11 3333333 1 1 11 11 33333 333333333 22222 00000000000000000 3333333 2 1 1 1 22222 11 1 2222 1 55555555555 111 1 111 11 111 111 11 11 111 11 1 2222 333333333333333 11 11 2222222222 1 11111 222 1 11 1111 1 1 33 1 1 33 22 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 222 222 1 2222 1 4444444444444444444 999999999999999999999999 2222 11 3333333333333 11 1 1 44444 3333333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 777777777777777777777777 1 11 0000000000000000000000000000000000000000000000 111 111111 2222222222222222 222 11111 5555555555555555555555 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 77 6666666 7 3 7 7 88 2222 4444 11 7 11111111 333 99 2 3 777 777 777 00 1 88888 33 3 777777777777 0 0 1111 99 111 99 99 111 666 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 00 9999999999999 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 9 444 6 7 6 11 8 8 444 11 88 11 44444444444444444444444 8 11 1111 8 0 8 88 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 33 3 77 3 222 6 11 3333333333333333333 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 33333333333333333 6666666 6 0 0 0 0 22222 22 3 33 6 6 6 6 7 8888 3 44444444444 444 0 777 3 33 777 777 33 3 33 3 777 33 0 8 0000 8 444444444444444 11 99 2222222222 6 6 0 66666 111 0 33 2 66 9999 0 3 11 3 6 2 11 00 3 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 44 33 4444444 33 33 1111 33 33 33 555 0 333 6 3 8888 7 3 7 2222222222222222222 222222222222222222222222 8888 11 5555555555555 88 3 3 66666 2222222 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 222222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 444444 99 6 6 3333333333333333 444 66666 0000000000000000000000 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ....... . . . . .. .... .... .. . ........ ... .. . . ... ... ... .. . ..... .. . ............ . . .... .. ... .. .. ... ... . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . .. ............. . .. .. ... ... . . . . . .... .. .. ... . . . ... . . . .. . . ... .. .. .. ....................... . .. .... . . . .. ... .. . . . .. .. . ....... .... .. . ....... .. . .. . ... . .. ................... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . ..... .. . .. . . . . . .... . ........... ... . ... . .. ... ... .. . .. . ... .. . . .... . ............... .. .. .......... . . . ..... ... . .. . .. .... . . .. . . . .. .. . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... .. .. ....... .. .. .... .. .. .. ... . ... . . .... . . . ................... ........................ .... .. ............. .. . . ..... ....... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ........................ . . . . . . . . .. . .............................................. ... .. . ...... .. . . ................ ... ..... ...................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 00 3333333 3 3 3 3 33 7777 3333 00 7 00000000 000 33 5 2 555 555 555 55 0 00000 88 2 000000000000 0 0 2222 22 777 22 22 777 000 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 22 4444444444444 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 6 888 7 7 7 00 0 0 888 00 00 44 22222222222222222222222 0 00 6666 0 8 0 00 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 88 2 22 2 444 2 00 8888888888888888888 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 55555 88 2 88 7 7 0 7 3 3333 3 00000000000 000 0 555 2 88 555 555 88 2 88 2 555 88 0 8 0000 0 000000000000000 00 00 6666666666 0 4 0 55555 000 0 88 5 88 0000 0 3 77 3 7 0 77 00 3 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 55 88 5555555 88 22 2222 88 88 88 333 7 333 7 3 0000 3 3 3 0000000000000000000 777777777777777777777777 3333 00 0000000000000 33 3 3 77777 0000000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 000000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 333333 22 7 7 7777777777777777 777 77777 0000000000000000000000 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGAGTT---AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTNGAG-G-----AGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-AT---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TCGAAA-TTCCAAAA-TCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTGATTACTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT---------A-TGTAAA-T-ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAA-AACACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT--CCTAAC-C-AAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATT-CACGC-CAAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG--ACAG-ATACT-GATGTTGTAGCGTTTT-GCAGTTTC-GACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTACGC-TTTTTTCC---ACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----CGAGA----GAGG-CAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG-CTT---GACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGGGAGAGTT--AAAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---NCTTTCCTTGAGAG-----AGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-AT---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TCGAAA-TTCCAAAA-TCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCTAAG--ACATTTGA--ACTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC-GAGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT---------AGTGTAAACT-ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAAACACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT-GGACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT--CCTAAC-C-AAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATT-CACG--CAAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG--ACAG-ATACT-GATGTTGTAGCGTTTT-GCAGTTTC-GACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCCCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTACGCCTTTTTCCC---ACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----CGAGA----GAGGACAAGGGAAAAAA---------------CAG------CATGA----CAGACCTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCGCCTT---GACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTC--AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAG-GT----AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTTGAGGG-------TGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGCAA-GCA------------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGAC---TT-T--ATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATA-AT---TTCAT----TACTTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACCG------------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC--AGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----ACA----------ATTCAAAACCACCACGA-G-AC--AAG--ACATTTGA---CTA------TG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTCG----AT---------A-TGTACA-T-ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---G-AGAGGCCCTGG-GTT--ACACGTAAGGTGGTTG-AACAAGCAAA---CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TA-GTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-A--CAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT--CCTAAC---AAT----GCAAATGTA-AC-ACTATGC-TGT-GTT---CC-CTTG--TAACC--ACG-A-TAAG-ACGACTCAAGAATGTTGATT-CACG--CTAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT--ACA--ATACT-GATGTTGTTACGTTTT-GCAATGTC-AACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTACA--TTTTTTCC---ACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----CGAGA----GA----AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG--TT---GACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG-A-C-AAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGAC---TT-T-TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-AT---T-TGT----TACTTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TCAAAA-T--CAAAA-TCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCG----AATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAA-AGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTC-----------------CCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ctAAAA-T-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTGATTACTA------Tc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCTAAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGAC---CTATATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATG-ATGGATATGC----AATCTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC-AAA-TTCC-AAA-TTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGA--AATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG--AATAATACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTC--TAAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATG-CCTAAA-T-AGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaTGTTGTGGCACAT----ATTTTC-TACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTTCGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTC-AGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGAC---TT-C-TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT--CCTAAC-C-AAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGAC---TT-TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-ATTTAC---T-TGTGTAATAC-TGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATTGAAA-ATC-AAAA-T-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TAT-ACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTGATTACTA------TAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA--T--CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGTCGCCTAACGCAAAA----GC-AATGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-A--AAG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATG---GTATTGCTGTTTACATTGTACAGAAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTAC-CATTTTTCCC---ACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----CGAGG----GAGG-CAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG-CTT---GGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA--T--AAAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTAGAG-G-----AGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATT-C-TATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATG-AT---T--AT----AATCTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TGAAAA-T--CAAAA-T-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTGATGACTA------TG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCG-TAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAA-AGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTA--TAAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT--CCTAAC-C-AAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAA--CCACG-AAGAAG-CTGACTCAAGAATGTTGATT-CACGT-CAAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGT-ACAG-ATACT-GATGTTGTA-CGTTTT-GCAGTTTC-AACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCGT---CCTG-T-ACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 444444 1 11 2222 222 22222 11 111 11 111 111 111 22 11111 11 4444444444444 1 1 2222 111 22222222 2222 1111 111 111 111 22222 1 11 111 333333333333333333 11 11 111 1 1111 11 111 11 1111 1 11 111 11 22 11 7777777777777777777777777 11 1111 22 111 11 1111111 2222 1111111 111 11 1111111 22222 111 1 11 3333333 1 1 11 11 22222 333333333 22222 88888888888888888 3333333 2 1 1 1 3333 11 11 1 2222 1 55555555555 111 1 111 11 111 111 111 11 111 11 111 2222 333333333333333 11 11 11 22222 1 11111 222 1 11 11 1 1 22 1 1 22222222 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 3333 11 1 2222 1 3333333 222222 999999999999999999999999 2222 3333333333333 11 1 1 44444 33333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 66666666666666666666666 1 11 0000000000000000000000000000000000000000000000 111 111111 2222222222222222 222 11111 5555555555555555555555 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 44 555555 7 3 7 7 88 2222 333 88 99999 88 7 333 99 2 3 777 777 777 00 1 88888 33 3 8888888888888 0 0 1111 99 111 99 99 00000000 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 333333333333333333 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 77 7777 7 6 11 8 8 444 11 88 11 4444444444444444444444444 8 11 1111 8 0 8 88 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 3 0 3 77 3 222 0 1 11 9999999 55555 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 44444444444444444 1111111 6 0 0 0 0 2222 22 3 33 6 44 3 6 7 8888 3 22222222222 444 0 777 3 33 777 777 777 33 3 777 33 555 0000 8 444444444444444 11 8 11 33 66666 0 6 0 66666 111 0 33 2 66 33 8 0 3 00 3 7 2 33333333 0 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 2 33 4444444 33 33 1111 33 33 33 7777 88 6 3 8888 7 3 7 6666666 444444 222222222222222222222222 8888 88 5555555555555 88 3 3 66666 55555 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 22222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 444444 99 6 6 3333333333333333 444 66666 0000000000000000000000 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ...... . . . . .. .... ... .. ..... .. . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. ........ . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . .................. . .. .. ... ... . . . . . .... .. .. ... . . .. .... . . .. . . ... .. .. .. ......................... . .. .... . . . .. ... .. . . . .. .. . ....... .... .. . ....... . . . .. . ... . . .. ....... ..... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . .... .. . .. . .. . . . .... . ........... ... . ... . .. ... ... ... .. . ... .. ... .... . ............... .. . .. .. ..... . . . ..... ... . .. . .. .. . . . .. . . . ........ . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... . .. ....... .. .. .... .. .. .. .... .. . . .... . . . ....... ...... ........................ .... .. ............. .. . . ..... ..... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ....................... . . . . . . . . .. . .............................................. ... .. . ...... .. . . ................ ... ..... ...................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 33 333333 3 3 3 3 33 7777 333 33 33333 33 3 000 33 5 2 555 555 555 55 0 00000 88 2 0000000000000 0 0 2222 22 777 22 22 33333333 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 888888888888888888 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 66 3333 7 7 00 0 0 888 00 00 44 2222222222222222222222222 0 00 6666 0 8 0 00 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 8 6 2 22 2 444 8 0 00 0000000 00000 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 5555 88 2 88 7 00 3 7 3 3333 3 33333333333 000 0 555 2 88 555 555 000 88 2 555 88 888 0000 0 000000000000000 00 0 00 00 44444 8 4 0 55555 000 0 88 5 88 22 8 0 3 77 3 3 0 77777777 0 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 5 88 5555555 88 22 2222 88 88 88 0000 33 7 3 0000 3 3 3 7777777 777777 777777777777777777777777 3333 33 0000000000000 33 3 3 77777 00000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 00000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 333333 22 7 7 7777777777777777 777 77777 0000000000000000000000 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-TT---AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTACG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGAGTT---AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATTACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTACGC--TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAGG--T---AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTT----GA--GG-GTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGAC----T-T-TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATA-ATT---T-CAT----TACTTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----AC----------AATTCAAAACCACCACGA-G-A--CAAG--ACATTTG-------ACTATG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC--AAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC---ACAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT-C--CTAA--CAAT----GCAAATGTA-AC-ACTATGC-TG-TGTT---CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATTC-ACGCT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT-A--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTACA---TTTTTTC--CACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----C-GAGAG---A---AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG-----TTGACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG-A-C-AAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGAC---TT-T-TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-A-T---T-TGT----TACTTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TC-AAAAT--C-AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCG----AATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAA-AGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTCC-----------------CC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct-AAAAT-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTG----ATTACTATc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCTAAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGAC---CTATATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATG-A-TGGATATGC----AATCTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC--AAATTCC--AAATTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGAAATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG-AATAA-TACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT--AAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATGC--CTAAA-TAGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttca-TGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTTCGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTCAGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGAC---TT-C-TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGAC---TT-TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-ATTTA-C---T-TGTGTAATAC-TGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAATC--AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TAT-ACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTG----ATTACTATAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA-T---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGT-CGCCTAACGCAAAA---GCAA-TGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-AA--AG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA--TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----C-GAGGG---AGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG----CTTGGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA-TA---AAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTA----GA--GGAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATT-C-TATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATG-A-T---T--AT----AATCTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TG-AAAAT--C-AAAAT-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTG----ATGACTATG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCG-TAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAA-AGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAACC--ACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGTC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTGTA-CGTTTT-GCAGTTTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCGT---CCTG-T-ACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 444444 1 11 2222 222 22222 11 111 11 111 111 111 22 11111 11 4444444444444 1 1 2222 111 22222222 2222 1111 111 111 111 22222 1 11 111 333333333333333333 11 11 111 1 1111 11 111 11 1111 1 11 111 11 22 11 7777777777777777777777777 11 1111 22 111 11 1111111 2222 1111111 111 11 11111 22222 111 1 11 3333333 1 1 11 11 22222 333333333 22222 88888888888888888 3333333 2 1 1 1 3333 11 11 1 2222 1 55555555555 111 1 111 11 111 111 111 11 111 11 111 2222 333333333333333 11 11 11 22222 1 11111 222 1 11 11 1 1 22 1 1 22222222 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 222222 11 1 2222 1 3333333 222222 999999999999999999999999 2222 3333333333333 11 1 1 44444 33333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 66666666666666666666666 1 11 0000000000000000000000000000000000000000000000 111 111111 2222222222222222 222 11111 5555555555555555555555 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 44 000000 7 3 7 7 88 2222 333 88 99999 88 7 333 99 2 3 777 777 777 00 1 88888 33 3 8888888888888 0 0 1111 99 111 99 99 00000000 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 333333333333333333 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 77 7777 7 6 11 8 8 444 11 88 11 4444444444444444444444444 8 11 1111 8 0 8 88 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 3 0 3 77 3 222 0 1 11 77777 3 55555 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 44444444444444444 1111111 6 0 0 0 0 2222 22 3 33 6 44 3 6 7 8888 3 22222222222 444 0 777 3 33 777 777 777 33 3 777 33 555 0000 8 444444444444444 11 8 11 33 66666 0 6 0 66666 111 0 33 2 66 33 8 0 3 00 3 7 2 33333333 0 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 2 33 4444444 33 33 1111 33 33 33 777777 88 6 3 8888 7 3 7 6666666 444444 222222222222222222222222 8888 88 5555555555555 88 3 3 66666 55555 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 22222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 444444 99 6 6 3333333333333333 444 66666 0000000000000000000000 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ...... . . . . .. .... ... .. ..... .. . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. ........ . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . .................. . .. .. ... ... . . . . . .... .. .. ... . . .. .... . . .. . . ... .. .. .. ......................... . .. .... . . . .. ... .. . . . .. .. . ....... .... .. . ....... . . . .. . ... . . .. ..... . ..... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . .... .. . .. . .. . . . .... . ........... ... . ... . .. ... ... ... .. . ... .. ... .... . ............... .. . .. .. ..... . . . ..... ... . .. . .. .. . . . .. . . . ........ . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... . .. ....... .. .. .... .. .. .. ...... .. . . .... . . . ....... ...... ........................ .... .. ............. .. . . ..... ..... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ....................... . . . . . . . . .. . .............................................. ... .. . ...... .. . . ................ ... ..... ...................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 33 333333 3 3 3 3 33 7777 333 33 33333 33 3 000 33 5 2 555 555 555 55 0 00000 88 2 0000000000000 0 0 2222 22 777 22 22 33333333 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 888888888888888888 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 66 3333 7 7 00 0 0 888 00 00 44 2222222222222222222222222 0 00 6666 0 8 0 00 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 8 6 2 22 2 444 8 0 00 88888 8 00000 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 5555 88 2 88 7 00 3 7 3 3333 3 33333333333 000 0 555 2 88 555 555 000 88 2 555 88 888 0000 0 000000000000000 00 0 00 00 44444 8 4 0 55555 000 0 88 5 88 22 8 0 3 77 3 3 0 77777777 0 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 5 88 5555555 88 22 2222 88 88 88 333333 33 7 3 0000 3 3 3 7777777 777777 777777777777777777777777 3333 33 0000000000000 33 3 3 77777 00000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 00000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 333333 22 7 7 7777777777777777 777 77777 0000000000000000000000 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA----TTAAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAGG----T-AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTT----GA--GG-GTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGAC----T-T-TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATA-ATT---T-CAT----TACTTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----AC----------AATTCAAAACCACCACGA-G-A--CAAG--ACATTTG-------ACTATG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC--AAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC---ACAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT-C--CTAA--CAAT----GCAAATGTA-AC-ACTATGC-TG-TGTT---CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATTC-ACGCT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT-A--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTA-CA---TTTTTTC--CACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----C-GAGAG---A---AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG-----TTGACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG-A-C-AAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGAC---TT-T-TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-A-T---T-TGT----TACTTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TC-AAAAT--C-AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCG----AATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAA-AGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTCC-----------------CC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct-AAAAT-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTG----ATTACTATc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCTAAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGAC---CTATATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATG-A-TGGATATGC----AATCTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC--AAATTCC--AAATTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGAAATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG-AATAA-TACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT--AAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATGC--CTAAA-TAGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttca-TGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTT-CGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTCAGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGAC---TT-C-TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGAC---TT-TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-ATTTA-C---T-TGTGTAATAC-TGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAATC--AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TAT-ACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTG----ATTACTATAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA-T---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGT-CGCCTAACGCAAAA---GCAA-TGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-AA--AG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----C-GAGGG---AGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG----CTTGGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA----TAAAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTA----GA--GGAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATT-C-TATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATG-A-T---T--AT----AATCTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TG-AAAAT--C-AAAAT-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTG----ATGACTATG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCG-TAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAA-AGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAACC--ACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGTC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTGTA-CGTTTT-GCAGTTTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCGT---CCTG-T-ACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 3333333 1 11 2222 222 22222 11 111 11 111 111 111 22 11111 11 4444444444444 1 1 2222 111 22222222 2222 1111 111 111 111 22222 1 11 111 333333333333333333 11 11 111 1 1111 11 111 11 1111 1 11 111 11 22 11 7777777777777777777777777 11 1111 22 111 11 1111111 2222 1111111 111 11 11111 22222 111 1 11 3333333 1 1 11 11 22222 333333333 22222 88888888888888888 3333333 2 1 1 1 3333 11 11 1 2222 1 55555555555 111 1 111 11 111 111 111 11 111 11 111 2222 333333333333333 11 11 11 22222 1 11111 222 1 11 11 1 1 22 1 1 22222222 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 222222 11 1 2222 1 3333333 222222 999999999999999999999999 2222 3333333333333 11 1 1 44444 33333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 66666666666666666666666 1 11 0000000000000000000000000000000000000000000000 111 111111 2222222222222222 222 11111 5555555555555555555555 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 44 7777777 7 3 7 7 88 2222 333 88 99999 88 7 333 99 2 3 777 777 777 00 1 88888 33 3 8888888888888 0 0 1111 99 111 99 99 00000000 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 333333333333333333 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 77 7777 7 6 11 8 8 444 11 88 11 4444444444444444444444444 8 11 1111 8 0 8 88 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 3 0 3 77 3 222 0 1 11 77777 3 55555 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 44444444444444444 1111111 6 0 0 0 0 2222 22 3 33 6 44 3 6 7 8888 3 22222222222 444 0 777 3 33 777 777 777 33 3 777 33 555 0000 8 444444444444444 11 8 11 33 66666 0 6 0 66666 111 0 33 2 66 33 8 0 3 00 3 7 2 33333333 0 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 2 33 4444444 33 33 1111 33 33 33 777777 88 6 3 8888 7 3 7 6666666 444444 222222222222222222222222 8888 88 5555555555555 88 3 3 66666 55555 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 22222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 444444 99 6 6 3333333333333333 444 66666 0000000000000000000000 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ....... . . . . .. .... ... .. ..... .. . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. ........ . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . .................. . .. .. ... ... . . . . . .... .. .. ... . . .. .... . . .. . . ... .. .. .. ......................... . .. .... . . . .. ... .. . . . .. .. . ....... .... .. . ....... . . . .. . ... . . .. ..... . ..... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . .... .. . .. . .. . . . .... . ........... ... . ... . .. ... ... ... .. . ... .. ... .... . ............... .. . .. .. ..... . . . ..... ... . .. . .. .. . . . .. . . . ........ . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... . .. ....... .. .. .... .. .. .. ...... .. . . .... . . . ....... ...... ........................ .... .. ............. .. . . ..... ..... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ....................... . . . . . . . . .. . .............................................. ... .. . ...... .. . . ................ ... ..... ...................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 33 7777777 3 3 3 3 33 7777 333 33 33333 33 3 000 33 5 2 555 555 555 55 0 00000 88 2 0000000000000 0 0 2222 22 777 22 22 33333333 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 888888888888888888 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 66 3333 7 7 00 0 0 888 00 00 44 2222222222222222222222222 0 00 6666 0 8 0 00 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 8 6 2 22 2 444 8 0 00 88888 8 00000 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 5555 88 2 88 7 00 3 7 3 3333 3 33333333333 000 0 555 2 88 555 555 000 88 2 555 88 888 0000 0 000000000000000 00 0 00 00 44444 8 4 0 55555 000 0 88 5 88 22 8 0 3 77 3 3 0 77777777 0 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 5 88 5555555 88 22 2222 88 88 88 333333 33 7 3 0000 3 3 3 7777777 777777 777777777777777777777777 3333 33 0000000000000 33 3 3 77777 00000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 00000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 333333 22 7 7 7777777777777777 777 77777 0000000000000000000000 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAGG-----T-AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTT----GA--GG-GTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGAC----T-T-TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATA-ATT---T-CAT----TACTTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----AC----------AATTCAAAACCACCACGA-G-A--CAAG--ACATTTG-------ACTATG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC--AAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC---ACAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT-C--CTAA--CAAT----GCAAATGTA-AC-ACTATGC-TG-TGTT---CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATTC-ACGCT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT-A--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTA-CA---TTTTTTC--CACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----C-GAGAG---A---AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG-----TTGACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG-A-C-AAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGAC---TT-T-TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-A-T---T-TGT----TACTTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TC-AAAAT--C-AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCG----AATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAA-AGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTCC-----------------CC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct-AAAAT-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTG----ATTACTATc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCT-AAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGAC---CTATATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATG-A-TGGATATGC----AATCTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC--AAATTCC--AAATTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGAAATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG-AATAA-TACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT--AAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATGC--CTAAA-TAGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttca-TGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTT-CGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTCAGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGAC---TT-C-TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGAC---TT-TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-ATTTA-C---T-TGTGTAATAC-TGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAATC--AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TAT-ACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTG----ATTACTATAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA-T---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGT-CGCCTAACGCAAAA---GCAA-TGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-AA--AG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----C-GAGGG---AGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG----CTTGGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA-----TAAAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTA----GA--GGAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATT-C-TATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATG-A-T---T--AT----AATCTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TG-AAAAT--C-AAAAT-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTG----ATGACTATG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCG-TAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAA-AGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAACC--ACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGTC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTGTA-CGTTTT-GCAGTTTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCGT---CCTG-T-ACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 3333333 1 11 2222 222 22222 11 111 11 111 111 111 22 11111 11 4444444444444 1 1 2222 111 22222222 2222 1111 111 111 111 22222 1 11 111 333333333333333333 11 11 111 1 1111 11 111 11 1111 1 11 111 11 22 11 7777777777777777777777777 11 1111 22 111 11 1111111 2222 1111111 111 11 11111 22222 111 1 11 3333333 1 1 11 11 22222 333333333 22222 88888888888888888 3333333 2 1 1 1 3333 11 11 1 2222 1 55555555555 111 1 111 11 111 111 111 11 111 11 111 2222 333333333333333 11 11 11 22222 1 11111 222 1 11 11 1 1 22 1 1 22222222 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 222222 11 1 2222 1 3333333 222222 999999999999999999999999 2222 3333333333333 11 1 1 44444 33333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 66666666666666666666666 1 11 0000000000000000000000000000000000000000000000 111 111111 2222222222222222 222 11111 5555555555555555555555 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 44 7777777 7 3 7 7 88 2222 333 88 99999 88 7 333 99 2 3 777 777 777 00 1 88888 33 3 8888888888888 0 0 1111 99 111 99 99 00000000 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 333333333333333333 6 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 77 7777 7 6 11 8 8 444 11 88 11 4444444444444444444444444 8 11 1111 8 0 8 88 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 3 0 3 77 3 222 0 1 11 77777 3 55555 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 44444444444444444 1111111 6 0 0 0 0 2222 22 3 33 6 44 3 6 7 8888 3 22222222222 444 0 777 3 33 777 777 777 33 3 777 33 555 0000 8 444444444444444 11 8 11 33 66666 0 6 0 66666 111 0 33 2 66 33 8 0 3 00 3 7 2 33333333 0 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 2 33 4444444 33 33 1111 33 33 33 777777 88 6 3 8888 7 3 7 6666666 444444 222222222222222222222222 8888 88 5555555555555 88 3 3 66666 55555 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 22222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 444444 99 6 6 3333333333333333 444 66666 0000000000000000000000 66666 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ....... . . . . .. .... ... .. ..... .. . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. ........ . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . .................. . .. .. ... ... . . . . . .... .. .. ... . . .. .... . . .. . . ... .. .. .. ......................... . .. .... . . . .. ... .. . . . .. .. . ....... .... .. . ....... . . . .. . ... . . .. ..... . ..... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . .... .. . .. . .. . . . .... . ........... ... . ... . .. ... ... ... .. . ... .. ... .... . ............... .. . .. .. ..... . . . ..... ... . .. . .. .. . . . .. . . . ........ . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... . .. ....... .. .. .... .. .. .. ...... .. . . .... . . . ....... ...... ........................ .... .. ............. .. . . ..... ..... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ....................... . . . . . . . . .. . .............................................. ... .. . ...... .. . . ................ ... ..... ...................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 33 7777777 3 3 3 3 33 7777 333 33 33333 33 3 000 33 5 2 555 555 555 55 0 00000 88 2 0000000000000 0 0 2222 22 777 22 22 33333333 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 888888888888888888 4 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 66 3333 7 7 00 0 0 888 00 00 44 2222222222222222222222222 0 00 6666 0 8 0 00 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 8 6 2 22 2 444 8 0 00 88888 8 00000 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 5555 88 2 88 7 00 3 7 3 3333 3 33333333333 000 0 555 2 88 555 555 000 88 2 555 88 888 0000 0 000000000000000 00 0 00 00 44444 8 4 0 55555 000 0 88 5 88 22 8 0 3 77 3 3 0 77777777 0 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 5 88 5555555 88 22 2222 88 88 88 333333 33 7 3 0000 3 3 3 7777777 777777 777777777777777777777777 3333 33 0000000000000 33 3 3 77777 00000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 00000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 333333 22 7 7 7777777777777777 777 77777 0000000000000000000000 77777 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAGG-----T-AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTT----GA--GG-GTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGAC----T-T-TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATA-ATT---T-CAT----TACTTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----AC----------AATTCAAAACCACCACGA-G-A--CAAG--ACATTTG-------ACTATG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC--AAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC---ACAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT-C--CTAA--CAAT----GCAAATGTA-AC-ACTATGC-TG-TGTT---CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATTC-ACGCT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT-A--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTA-CA---TTTTTTC--CACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----C-GAGAG---A---AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG-----TTGACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGC-GCGT---CCTG-A-C-AAAAC-TTT-GAAATGT---GTGTTG-CAAAAAA--CAAATTGTG------TTGGCTAACTGT-AAATGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGAC---TT-T-TATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATA-A-T---T-TGT----TACTTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TC-AAAAT--C-AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCG----AATGG--AATATG-GAA-ACCTAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCAT---CCTG-TAA-AGAACTTTT-GAAATGT---G-GTTC-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-TAA
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTCC-----------------CC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct-AAAAT-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG--CAAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTG----ATTACTATc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCT-AAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGAC---CTATATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATG-A-TGGATATGC----AATCTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC--AAATTCC--AAATTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG--TAGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGAAATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG-AATAA-TACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT--AAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATGC--CTAAA-TAGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttca-TGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTT-CGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTCAGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGAC---TT-C-TATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGAC---TT-TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-ATTTA-C---T-TGTGTAATAC-TGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAATC--AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TAT-ACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAGCTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTG----ATTACTATAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA-T---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGT-CGCCTAACGCAAAA---GCAA-TGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-AA--AG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----C-GAGGG---AGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG----CTTGGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTC---TGT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA-----TAAAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTA----GA--GGAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATT-C-TATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATG-A-T---T--AT----AATCTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TG-AAAAT--C-AAAAT-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG--CAAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTG----ATGACTATG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCG-TAGAAAATATGCGAAGACATAAAATATGCACATATCATTGCCATATACTGCTCACATGCACAGTCTCCCTGATAA-AGAAATTTTAGAAATGTGAAG-GTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAACC--ACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGTC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTGTA-CGTTTT-GCAGTTTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCA----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTC---TGT-----TGCAGCGT---CCTG-T-ACAGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-A-------------------AGTACCTTCT---GT-----TGCAGCAT---C---------------------ATGT---C-ATTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
blockSeqs : . T . T CG AGACTGCTAAAGTA . G . T G T T A TA A GTTTGATAA C A TT C C . . A A AA GTTTCT T G T T AG TACC TTA TG GCAGC TC A ACA AT G T CAA ATA AAA TA C TTAT TC A AAAGCGAACT A . TTAA TT AAT GA AG TTATTC T ATAA AA C A CAGT A TAA A A TAT CAA A A T . A GTGTT T A AT A TCG . TTACTTGTGTAAT T CA CA AGA ATG C A G T C TACT A GC AAC A A A TCC C T GC A T TGA AC GA TT GGAGACTCCGAGTAAAGCCTC G AA GAGA C A CT ATC AA A A A AC CA . TGATC TAAA CA A CACAAAG A G AT A AT T GT AAATA T GGGGT GAC C GT ATCTAAT A A T AC A G GA ACTG CCTTCA TATA A GTCTGATACCTGAGGGA ACTAAC G G C G T ACCG GT T GG G CA A G T ACGT C CCAGACATCGA GGA T CTG A GG CTA TAT CTA GC T GTA AT TAT TCG T CGGTGGTGTGGCCA TC G GC CG CTATT G T AAGT ATC T GA C TT TA G T C CA A A T AAACAGT A GG TA GG T G A A AT A TTACCAATA CC T A A GACGAACA ATC GTG TGT C TA ACACAG AC A CAAA TA TG AC CGCCC GG G T TGAA T A T GTAGTCA TGAAGA AAAAAAAAAAAAAACCAG GCAT AT GGATGTTTCAG GC A C TCTCT CCCTC CA A C T G AGAT T G G C T C A TTAGTA G CAAA T A C CG T A T AGA A . A GATGCTATCCCCCCCCCCCACG A G A G T T . CA A TTACATGTTACAATGACACTGGCCTAGTC CAT AT . GCCCG AA C G CATAAAATATGCACAT TAC TCACA CTCCCTGATAAAGAAATTTTA GAAG A A TAACAT . A A G CC . A GC . ATCCTATGA T G ATTAT T . T . . . T
blockSeqs : . C A AC C . C TA T . T . . A . TT A . A A A G T . . . G A TTT . A AATTA . . . . . . . CTATA . GCA . . . . . . . A . . A . . . . . C . . C . . GATGGATATGCA C . . AG . . . G . . . A . A . . G TC T . . . . A . G T GGATATG . . GA . . . . C . . A A . . CTC C C . GC A T AC T GG A . A G . . . . . . A . . A G . TAC ATGTAT AT . ATG TCG G C . . . G GC T . G A . . . . . AACAT A . . A . . . A . T . . AG CT . GTG . . . A AA A . TGTT ATC . . C CC A G . . A . . . TACAG . AG T T T . A . . A AAT . T . A AA T . . C . GTCG . A . . . . CCA . . . CA . . T C AGG CAGGTTCGC . CT C . . . . C . . C . . . A . . . . . . T G A A . C . T A T GA . . . CC A A A T T T . CA A ATTACATGTTACAATGACACTGCCTAGTC . GT . AA . . . CCTAAATGCAC T . CCTGTAAAGAACTTTT G . . . . . . . CT . . . . . . . A . . G . . . .
blockSeqs : G . . . . T C T . A AA . . . . . . . TTTC . . . . . . . . . G . . A . . . . . . . . T . . AATTTGTT C . . AG . . . G . . . A . T . . A C . . . . . A . . T GGG . . G . . . . . . . A G . . T T T . GC G G A A A T . A T . . . . . . A . . . . . . . . . . . T . G . . . . . . A . . . . AG TG . GG . . . C C A . TTT . . . C . A . . . A . A . . . . . . A . T . A AC T . . C . CTCG . . . . . . . . . T G A T . . T A T G . . . G A A . . . CA T ATCAGACAATGTCGGGT . G . A . . . CCCAAATGCAC . . CCTGTACAGAACTTTT C . . . . . . . TT . . . . . . . A . . T . . . .
blockSeqs : . . . . TTT . . . . . . . . . A . . . . . . . . . . . A . . GATTATA . . . A . . . . . . . . . T . . . C . . . . . G . . T GG . . G . . . . . . . . A . . T . T . C A A T C G A . A G . GG . . . C T G . . A . T . A . . . . . . C G . . . . . . . CC . . . . . . . A . .
blockSeqs : . . . . TTC . . . . . . . . . . . . T . A . . . . . . C C . . . . .
blockSeqCons : TTATC*** GATTATA*********** AG* A* A* TC** A** T* GGG********************** GA** ** G** A**** C* CA CCAAATGCAC****** *** CCTGTAAGAATTTT******** N**** CC A****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGAC---TT-T-TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATG-A-T---T-CGT----TACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTCC-AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGC-CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCCAA---ATGCAC--ATCATTACCTTCT--TGT-----TGCAGCGT---CCTG-T-A-AGAACTTTT-GAAATGT---G-GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATC---TATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATGATTATA-----------ACCTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TCA-AAATTC--AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GATA--GGA--ACTG-TAT-ACACCGGG----------------------AGT-TGA--TGGA--AT-GTA-TTCGAAG--CAAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGAG--ATCNAAG--ACATTTGA----TNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCG----A-TGG--AATATG-GAA-ACCAAATGCAC------ATCATTACCTTC---TGT-----TGCAGCGTCCTGTAAGAATTTT--------GAAATGTN----GTTG-CAAAAAAT-CAAATTGTG------TTGG-TAACTGT-AAATGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 55555555555555 11 1 1 1 1 11 1 555555555 1 1 1 11 3333333 1 11 2222 222 22222 11 111 11 111 111 111 22 11111 11 4444444444444 1 1 2222 111 22 2222 1111 111 111 111 22222 1 11 111 333333333333333333333 11 11 111 1 1111 11 111 11 1 1 11 111 11 22222 7777777777777777777777777 11 1111 1111 111 11 1111111 2222 1111111 111 11 11111 22222 111 1 11 3333333 1 1 11 11 22222 333333333 22222 88888888888888888 3333333 2 1 1 1 3333 11 11 1 2222 1 55555555555 111 1 111 11 111 111 111 11 111 11 111 2222 333333333333333 11 11 11 22222 1 11111 222 1 11 11 1 1 22 1 1 22222222 1 11 11 1 1 1 11 444444444 11 1 33333333 222 111 111 11 4444444 11 11 2222 11 11 11 222222 11 1 2222 1 3333333 222222 999999999999999999999999 2222 3333333333333 11 1 1 44444 33333 11 1 1 2222 1 1 1 1 2222222 2222 1 22 1111 1 1 1 66666666666666666666666 1 11 0000000000000000000000000000000000000000000000 111 2222 44444444444444444444 111 11111 77777777777777777777777 11111 111111 11 333333333 11111 1 1 111 1
lowQualScore : 5 1 5 1 77 22222222222222 88 1 5 5 5 5 1 1 88 5 333333333 6 7 11 0 6 1 5 5 5 0 7 44 7777777 7 3 7 7 88 2222 333 88 99999 88 7 333 99 2 3 777 777 777 00 1 88888 33 3 8888888888888 0 0 1111 99 111 99 99 66 1 6 5555 99 6 6 7777 8 444 8 3 444 444 3 0 8 8 8 8 00000 6 8 11 1 444 8 777777777777777777777 8 11 11 888 444 8 8 0 8 8 7777 88 11 222 8 8 11 5 99 7 6 11 8 8 444 11 99999 4444444444444444444444444 8 11 1111 8 0 8 2222 444 99 8 6 7 88 99 6 6666666 0000 99 8 8888888 3 0 3 77 3 222 0 1 11 77777 3 55555 777 0 33 2222222 0 3 0 33 3 2 33 99999 222222222 0 77777 7 44444444444444444 1111111 6 0 0 0 0 2222 22 3 33 6 44 3 6 7 8888 3 22222222222 444 0 777 3 33 777 777 777 33 3 777 33 555 0000 8 444444444444444 11 8 11 33 66666 0 6 0 66666 111 0 33 2 66 33 8 0 3 00 3 7 2 33333333 0 77 33 0 44 5 0 3 0 33 3 444444444 33 3 0 3 44444444 000 777 777 2 33 4444444 33 33 1111 33 33 33 777777 88 6 3 8888 7 3 7 6666666 444444 222222222222222222222222 8888 88 5555555555555 88 3 3 66666 55555 88 3 6 7 2 8888 1 6 6 3 0 0 0 6666666 2 0000 1 0 2 22 3 3 3 0 7777 0 0 0 22222222222222222222222 7 6 3 0 3 0 3 8 00 1 5555555555555555555555555555555555555555555555 444 88 6 0000 99 6 6 33333333333333333333 111 6 66666 00000000000000000000000 99999 6 6 999999 6 6 8 8 44 8 8 11 8 222222222 8 8 77777 8 8 1 0 0 777 0
lowQualScore : . . . . .. .............. .. . . . . . . . .. . ......... . . .. . . . . . . . . .. ....... . . . . .. .... ... .. ..... .. . ... .. . . ... ... ... .. . ..... .. . ............. . . .... .. ... .. .. .. . . .... .. . . .... . ... . . ... ... . . . . . . ..... . . .. . ... . ..................... . .. .. ... ... . . . . . .... .. .. ... . . .. . .. . . .. . . ... .. ..... ......................... . .. .... . . . .... ... .. . . . .. .. . ....... .... .. . ....... . . . .. . ... . . .. ..... . ..... ... . .. ....... . . . .. . . .. ..... ......... . ..... . ................. ....... . . . . . .... .. . .. . .. . . . .... . ........... ... . ... . .. ... ... ... .. . ... .. ... .... . ............... .. . .. .. ..... . . . ..... ... . .. . .. .. . . . .. . . . ........ . .. .. . .. . . . . .. . ......... .. . . . ........ ... ... ... . .. ....... .. .. .... .. .. .. ...... .. . . .... . . . ....... ...... ........................ .... .. ............. .. . . ..... ..... .. . . . . .... . . . . . . . ....... . .... . . . .. . . . . .... . . . ....................... . . . . . . . . .. . .............................................. ... .. . .... .. . . .................... ... . ..... ....................... ..... . . ...... . . . . .. . . .. . ......... . . ..... . . . . . ... .
lowQualScore : 5 0 0 0 55 00000000000000 00 0 5 5 0 5 0 0 55 5 333333333 7 3 77 7 7 0 0 0 5 7 3 33 7777777 3 3 3 3 33 7777 333 33 33333 33 3 000 33 5 2 555 555 555 55 0 00000 88 2 0000000000000 0 0 2222 22 777 22 22 22 0 7 8888 22 7 7 0000 0 000 0 8 000 000 8 8 0 0 0 0 00000 0 0 00 0 000 0 666666666666666666666 0 00 00 888 000 0 0 0 0 0 0000 88 00 000 0 0 88 8 22 7 7 00 0 0 888 00 00000 2222222222222222222222222 0 00 6666 0 8 0 2222 000 00 0 7 3 33 22 7 8888888 4444 00 0 2222222 8 6 2 22 2 444 8 0 00 88888 8 00000 555 0 88 5555555 0 2 0 88 2 5 88 33333 000000000 7 77777 3 00000000000000000 0000000 7 0 0 0 0 5555 88 2 88 7 00 3 7 3 3333 3 33333333333 000 0 555 2 88 555 555 000 88 2 555 88 888 0000 0 000000000000000 00 0 00 00 44444 8 4 0 55555 000 0 88 5 88 22 8 0 3 77 3 3 0 77777777 0 88 22 2 22 5 0 2 0 88 2 555555555 88 2 0 2 00000000 888 555 555 5 88 5555555 88 22 2222 88 88 88 333333 33 7 3 0000 3 3 3 7777777 777777 777777777777777777777777 3333 33 0000000000000 33 3 3 77777 00000 33 3 7 3 0 3333 0 7 7 3 0 0 0 0000000 5 8888 0 0 5 00 2 2 2 2 8888 0 0 0 00000000000000000000000 3 5 2 8 2 2 2 0 66 4 8888888888888888888888888888888888888888888888 000 88 7 8888 22 7 7 22222222222222222222 777 7 77777 33333333333333333333333 33333 7 7 222222 7 7 0 0 66 0 0 00 0 000000000 0 0 88888 0 0 0 0 0 555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGACTT--TCTATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATGA-T---T--A------T--AAT-CTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-GAAATTC--AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TATTACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAG-C--AAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCGA----TGGAA--TATG-GAA-A-C-C-AAA---TGCACAT--CATTACCTT---C-TGTT-----GCAGCGTC---CTG-TA-A-G--AA-TTTT-GAAATGT-C---GTTG-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTAAA-TGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
Reference ( family-71 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAACTCATCCAAATATAGCGCGANAATTGTGCTAACGNTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCAGAAACATNGCAGGTTGATCAAGCTCACGAACAGAACAACGCTTGATATAGGGAGATGGTGGTGCTATCGGATTGACTGAGGACCCGTCAGCTCTGNGGCGCNGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAANCGTCGTTAGTTCCAGTAANCCCTTGCGAAGACGACAACACACTACGACGTTACAATACCGTCACAAAAAGCN-TTCTTAGGGAGA-----T-AAAAGGCTTGTC-AAGGCTGTTGAACGATT--TTGG-A--AAT---CCTTTNCTN----GA--GGAGTGATTAGACACCTGTACTAAGCTTGATACAAAGG---ATGT---TG---TCGATTCAGACANTAGCTACNATCGATAC-T--TAAGAGAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAC--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTA-TCTATG-ATC----CTAT--CA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATGA-T---T--A------T--AAC-CTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--NTTTTCAGT-CA-TC-AAAATTC--AAAATCA-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACTG-TA-TACACCGG----G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAG-C--AAACGT---TGA--TG-TTC-CAGCAAA-GAGATCC--AG-ATTC--T----GAAGCCTTC---AT-NAT-TGATG-GC----GCAGAGATGGTGAATTCAAAACCACCACGA-G-ATCNAAG--ACATTTG----ATNACTATG-----CACA---AGA-TA--TTA-------TTCT-GCCAT-ACA--TAAGACTCC--TGTTTGAGC-AC--AGTAC---CAT---CGGGTAG---A-ATATGTTTTCG--TGAT----------ATGTAAAT--ACGGAGATAGTCTCAA-AGCA-AA-TACC-AGGACAAA---GGAGAGGCCCTGGTGTT--AGGCGTAAGGTGGTTGGAACAAGCAAAAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--AGACAT--GACAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-T--TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAGAC-ACTACGC-TGTTGTTATCCC-CTTG--TAACCCCACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGCC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAG-A--CAG-ATACTGA-TGTTGTAGCGTTTT-GCAGTTTCG-ACCTTTTGC-ACAACT-TGGC--TTAGATAA-----AAT-TTGTG--GATATGTTA-TGGTCGAA-----ACAAAAGAC--TTT---CGCTG---GCTCCC--GATANTCGC-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCATTA-CG---TTTTTTC--CACGCTTTTACA-GGATTCG-ATTACTGTATCAG-CATTT-----C-GAGAG---AGGCAAGGGAAAAAA---------------CAG------CATGA----CAGACNTGGGGATGCTT--C--AGACG--TTACAG-AGT-ATTCA-----CTCGCG----CTTGACAT--GAC-ACCTGTGTATC----GTTTCTAGAAGNTGACATTGGA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTNATATGACAG-GGCAAC-TCTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCGCAA--G-AAA-CAAC-GC-CCTCC-AT-GCTACCCCCCCCCCC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCANCATTGCAAGGTGGACATGTA-TGGAGCCAAGATGTGACATGTA--------TTACA---------------GAC-----CTAGTCGG--CTGAACACTG---GGTGTTGGG-TGAAAGACAAAGGCGA----TGGAA--TATG-GAA-A-C-C-AAA---TGCACAT--CATTACCTT---C-TGTT-----GCAGCGTC---CTG-TA-A-G--AA-TTTT-GAAATGT-N---GTTG-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTAAA-TGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCNTATTAC-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|1 : ACAGAACTCATCCAAATATAGCACGAAAATTGTGCTAACGGTAATTTTACG--GTTCATA--------------TTTTCAGAAACATCGCAGGTTGATCAAGCTCATGAACAGAACAACGCTTGATA-AAGGAGATGGTG-TGC-ATCGGATTGACTGAAGACCCGTCAGCTCTGAGGCGCTGGATAG--GCTGG-TCAGAGAT---------CAGC-GGTTGGTAG-TGAATTTGAAAGTGTTGTTAGTTC-AGTAAGTCCTTGCGAAGACGACAACAC-CCATGACGATCAAATAACGTCACAAAAAGCT-TTCTTAGGGAGG-----T-AAAAGGCTTG-C-AAGGC-GTTGAACGATT--TTGG-A--AAT---GCTT-CCTT----GA--GG-GTGATTAGAC--CTGT-CTAAGCTT-ATACAAAGG---ATGT---TG---TCGGTTCAGACAATAACTACAATCGATAC-T--TAAGAGAT--ATTGGAGC-AAGC----A--------TATACCG-AGCTTTTT----AGAC--AGGATCA---C--AAA----GGACAAC--CTGACTT----TATG-ATT----CTAT--CA-AAA-G----AAC-AACTTT---CCTTT-ATTC-GCC---GAA---AAGCAGAACCAAA-TCCTGG-ATACG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAATATAA-T---TTCA------T--TAC-TTGT--TTTC--T-G-GCT---TTTC-ATT-TCCT-CCAAA-CA-GACAG-TG----CCGTACTGGAAG--AT--ATTTTCAGT-CA-TCAAAAATTCCAAAAATCA-CCCCCTA--TTC-ATTGTCACAG-GAT---GGA--ACT--TATTACACC------G------------------AGT-TGA--TG--GAAT-GTA-TTCGAAGCC--AAACGT---TGA--TG-TT--CAGCAAA-GAGATCC--AGTATTC--T----GAAGCCTTC---AT-AAT-TGATG-GC----AC----------AATTCAAAACCACCACGA-G-A--CAAG--ACATTTG-------ACTATG-----CACA---AGA-TA--TTA-------TTCT-GCC-T-ACA--TAAGACTCC--TGTTTGAGC-A---AGTAC---CAT---CAGGTAG---A-ATATGTTTTC----GAT----------ATGTACAT--ACAGA-ATAGTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGG-GTT--ACACGTAAGGTGGTT-GAACAAGC--AAA-CACCAAAGCATTGGAACA----GCTTTCT-TTA--GAA-----GACAGTT--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT---AGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC---ACAAGTATT-T--TA-ACTCT---------G-G---GTGGAA--ATGT-C--CTAA--CAAT----GCAAATGTA-AC-ACTATGC-TG-TGTT---CC-CTTG--TAA--CCACG--ATAAG-ACGACTCAAGAATGTTGATTC-ACGCT--AGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCACTGTACAT-A--CA--ATACTGA-TGTTGTTACGTTTT-GCAATGTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATA-TA-TAGTCG-A-----AC-AAAGAC---TT---CGCTG---G-TCCC--GATAC---C-ATTATT--GGAGCATTCT----TTGGGG--ATT--CCAGTC--TCTGCATTA-CA---TTTTTTC--CACGCTTTTACA-GGATT-G-ATTACTGTATCAG-CA-TT-----C-GAGAG---A---AAGGGAAAAAA---------------CAG------CATGA----CAGACT--GGAATGCTTACC--AGACG--CTACAG-AGT-ATTCAG----CTCGCG-----TTGACAT--GAC-A-CTGTATTTC----GTTTCTAGAAGCTGACATTGGA-GATC-CTG-GAAG-ACTGT-----TGTGT-C----TTTAATATGACAG-GGCGAT-TCTACA-TTGCGGTC-ATGAGGCACGCTTTGAA-TGGTCGCAA--G-AAA-CAACGGC-CCTCT-ATGGCTACTTCCCCCC-------ACT-GA-ATGCTTTACTCT-GCACATCACGAGTGCA-CATTGCAATGTGGAAATGTACTGGAGC--AATTGTGACATGTA--------T--CA---------------GAC-----CAAGTCGGT-CTGAACACTG---GGGGTTGGGCTGAAAGACAAAGGCAA----TGGAA--TATG-GAA-ACC-C-AAA---TGCACAT--CATTACCTT---CTTGTT-----GC-GCGTC---CTG-AC-A-A--AA-CTTT-GAAATGTGT---GTTG-CAAAAAA--CAAATTGTGT------TGGCTAACTGTAAA-TGCTACCGTTT-T--GACTT---TGTAAC-AGGT--TTGATGTACCTGT---------AA-TTGTC-AGATCT-----ATGAA-GCTTCACGATATTACGGACCATCTGATACAATGCATCCTTAAGGTG-AAAA
gi|10 : attacgcaagatggcttctaatacatgtgcgggatatgcgtcgattcAC--AGGATCA---C--AAATGAGGAACAAC--CTGACTT---TTATG-ATT----CTAT--CA-AAAAG----AAC-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CGTCAATT---GAAAA-ATAATT---T--G------T--TAC-TTGT--TTTC--TAG-GCT---TTTC-ATT-TCCTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--AT--ATTTTCAGT-CA-TC-AAAA-TC--AAAATCA-
gi|12 : C-----CTAGTC----CTGAACACTGCATGATATTGGG-TGAAAGAAAAAGGCGAA---TGGAA--TATG-GAA-A-C-CTAAA---TGCACAT--CATTACCTT---C-TGTT-----GCAGCATC---CTG-TA-AAG--AACTTTT-GAAATGT-G---GTTC-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTTAA-
gi|13 : -TCTACATTTGCGGTCAATGAGGCACACTTTGAATTGTTCACAA--G-AAAACAAC-GC-CCTCC-----------------CC----GACTAGAGATGCTTTACTCCAGCACATCAAGAGGGCAGCATACCAAGGTGGACATGTA-TGGAGCCAAGATGTGACAT
gi|14 : ct--AAAAT-A-CCCCTCC--TTC-ATTGTCACAG-GAT--AGGA--ACT--TA-TACACC-G----G------------------ATT-TGA--TG--G-AT-GTA-TTCGAAG-C--AAACGT---TGA--TA-TTC-CAGC-AA-GAGATCC--AG-ATTC--TGATCGAAGCCTT
gi|16 : CTTGATACAAAGG---ATGT---TG---TCGATTCAGACAG-AGCTAACATTGATTC-T-----GAGAT--ATTGGAGCAAAGCAATTA--------TATACCG-AG-ATCTT----GGAC--AGGATCA---C--AAATGatc
gi|17 : ATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATAACAG-GGCAACGTCTACATTTGCGGCCAATGAGGCACGTTTTGAATTGTTCGCAA--GAAAA-CCAC-GC-CC
gi|18 : TC-CAGTAA--GAGATCC--AG-ATTC--T----GAAGCCTT----AT-CAT-TGATG-GC----GCAGAGATGGTGAATTCAAAATCACCAAAA-A-ATCTAAG--ACATTTG----ATTACTATc
gi|19 : TCAGAGATGTTTGATAACAGCCGGTTGGTAGATGAATTTGAAATTGTTGTTAGTTCCAGTA
gi|2 : TACAACATTACCAT-CCGTCAACAAAAGTAATTCTTAAGGAGAGTTTCT-AAACGGATTATCGAAGGCTGTGAAACGATTAGTTGATACCAATTTACCTTTGCTGCAGCGATCGAAGTGATTAGACACCTGTATTAAATATGA-ACAAAGGCAAATGTATATGAAATCGATTCAGACATAAGCTACAATCCGTAC-TTATAAGAGATTCATTGGAGCAAAGCA---AAGCGAACTCAGACCGAAG-TTTTTTTAAAGACTTACGATCAAATCGAAAATCCGGAACAACAGTTGACCTA-TATATGTATCGCA-CTTT--CACAGA-G----GATAAACTTCTAACCTTTAATTCAGCCTATAAA---AGGCG-AACC-AG-TCCTAG-AT-CGAT-----CGATAAGAAAGCCTAT--AATTCATTTCGGAAAA-ATGA-TGGAT--A------TGCAAT-CTGTCATTTC--TAG-GGTATGTTTC-ATTATACT-CAAGAGGG-AACAGCTGTACTTGAT--TGGAAAGCATAACTGTTCAGTACT-TC--AAATTC--CAAATTATTCCTTCC--TTCAATTTTCACAG-GACTGAGGAACACTGACATTACACCGGATATG------------------TGTGCGA--TGGAGAAT-A-A-TTCGAAG-T--AGACGTATCTGAC-TGATACACAGCAAACAAGCTCCCAGG-ATTCCTC----GAAGAAATC---ATCAAT-TGATGCACAAAGACAGAGGTGTTGAATTCAACA-CACCATGA-G-ATCAAAG--ACATCTGAAATATGAGTCTG-----CACAGACGGACTAGTTTAATCTAATTTCTAGCCAT-AAAACTAAGACTCTGATATTGAAGC-ACTGAGTAT---CCTTCACAGGTAATATA-ATATGCTCTCGTCTGATACCTGAGGGAATGTAAACTAAC--AGATAGTTCCAAGAACACAA-TACCTAGGACAAAACCGGAGAG----TGGTATCGGAGGCAT
gi|2 : gaagaGGTTGGAACAAG-AATAA-TACTTAA-CAT--GGACAACGTGCTTTTT-TTG--A-ACAT-----AGTGGAACTAACCTGAAAACGTA-CT--TTTCTATAGTATATTTCT--AAGTCAGCGCTGATTT-GACCAGTATTCGGAATTCAATTATACAAGTCTC-TCGTA-ACTTTCGGTGGTGTG-GCCAGTGAAATCATATGC--CTAAA-TAGCTATTGGTAATGTAGACTACTACGCAAGT--TCATCCCTCTTC--TAACCTTACGTAAGAAGTCTGtgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|2 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttca-TGTTGTGGCACAT----ATTTTCT-ACTTATTGCGACA-CTATGGCATTTAG-TAATTACCAATATCGTGCCGATATGTAAATGGTCGAAGACGAACAAGATACATCTTGTGTGCTGTGTGCTCCGTAGATAGTCG---ATATTACGGAGC--TCTCAAATCGGAGTAATTTGCCGGGCACTCTGCACTT-CGCCCTCTTTTCGGTAC-CTTTTATTTGGATTCA---TACTGTATCAGACATTTGTAGTCAGACAGTGAAGACAAGGGAAAATA---------------CAGGTTCGCCATAGGCATCAGACATGGGGATGTTT--CAGAGACGGCTTACAC-AGTCATTCATCTCTTTCACGCCCTCTGGACATCAGAC-ACCTGT-TATCAGATATATCTAGAAGTT--CATTGGACGAGCTCTGCGAGGACGT-TTAGTATATGTGCCAAATTTAGTCTGACAGAGGCAAtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtacctgttgtggcacatattttctacttattgcgacactatggcatttagtaattaccaatatcgtgccgatatgtaaatggtcgaagacgaacaagatacatcttgtgtgctgtgtgctccgtagatagtcgatattacggagctctcaaatcggagtaatttgccgggcactctgcacttcgccctcttttcggtaccttttatttggattcatactgtatcagacatttgtagtcagacagtgaagacaagggaaaatacaggttcgccataggcatcagacatggggatgtttcagagacggcttacacagtcattcatctctttcacgccctctggacatcagacacctgttatcagatatatctagaagttcattggacgagctctgcgaggacgtttagtatatgtgccaaatttagtctgacagaggcaaaatatcta
gi|20 : gaagatacaacattaccatccgtcaacaaaagtaattcttaaggagagtttctaaacggattatcgaaggctgtgaaacgattagttgataccaatttacctttgctgcagcgatcgaagtgattagacacctgtattaaatatgaacaaaggcaaatgtatatgaaatcgattcagacataagctacaatccgtacttataagagattcattggagcaaagcaaagcgaactcagaccgaagtttttttaaagacttacgatcaaatcgaaaatccggaacaacagttgacctatatatgtatcgcactttcacagaggataaacttctaacctttaattcagcctataaaaggcgaaccagtcctagatcgatcgataagaaagcctataattcatttcggaaaaatgatggatatgcaatctgtcatttctagggtatgtttcattatactcaagagggaacagctgtacttgattggaaagcataactgttcagtacttcaaattccaaattattccttccttcaattttcacaggactgaggaacactgacattacaccggatatgtgtgcgatggagaataattcgaagtagacgtatctgactgatacacagcaaacaagctcccaggattcctcgaagaaatcatcaattgatgcacaaagacagaggtgttgaattcaacacaccatgagatcaaagacatctgaaatatgagtctgcacagacggactagtttaatctaatttctagccataaaactaagactctgatattgaagcactgagtatccttcacaggtaatataatatgctctcgtctgatacctgagggaatgtaaactaacagatagttccaagaacacaatacctaggacaaaaccggagagtggtatcggaggcattgtactccaaggattgtagggagtttcatttaatgttgttcaggttggaacaagaataatacttaacatggacaacgtgctttttttgaacatagtggaactaacctgaaaacgtacttttctatagtatatttctaagtcagcgctgatttgaccagtattcggaattcaattatacaagtctctcgtaactttcggtggtgtggccagtgaaatcatatgcctaaatagctattggtaatgtagactactacgcaagttcatccctcttctaaccttacgtaagaagtctgtatgatatctcaaataaaaaaacaatatgaattgttgtcattcacctttcaggcggattagatgctcctttttcataatgatgcgtatggaactgtttcctttgtctttcctcttagtcaaggtactaaatgatattgaccggtcctgtaccC--AGGATCA---C--AAATGAGGGGCAAT--TTGACT---TCTATG-ATC----CTAT--CA-AAA-aatatcta
gi|21 : --TA-ACACT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAC----GCAAATGTAAAag
gi|3 : tgAGGGGCAAT--TTGACTT--TCTATG-ATC----CTAT--CA-AAA-ACAGTAGT-AACTTC---CTTTT-ATTCG--C---GAACAAAAGCGAAACCAAAATCCTGCTAA-CG-TGTGTTTGACAAGAAAAACC-TATCATCTATT---GAAAA-AT---T---T--ACTTGTGT--AATACTGC--TTTCCATAGAGCT---TTTCCATT-TCTTGCCAACGCATGACAG-TG----CGATA-TAGAAG--AT--TCTTTCAGT-CAATT-GAAAATC--AAAAT-A-CCCCTCCGCTTC-ATTTTCACAGTGAT--AAGA--ACCG-TA-TACACCGG----G------------------AGT-TGAAATG--GAATCGTAATTCGAAG-CTCAAACGT---TGAAATG-TTC-CATAAAG-GAGATCC--AG--TTC--T----GAAGTCCTT---AT-TCTATGATG--C----GAGAAGATGGTGAATTCAAA-TCACCAAAA-ATATCTAAAGTACATTTG----ATTACTATAGGGGTTACA---AGA-TA--TTA-------TTCT-GCCATTACA--TAA--CTCC--TGTTTGAGTTAC--AGTACATGTAT---CGGGTAG---ATAT-TGTTTTCA--TG-------------TGTAA-T---CGGAGATAGTCTCAACGGCA-GAGTGCC-AGGGCAAA---GGAGAGGTCCTGGTGTT--AGGCGTAAGGTGATTGGAACAAGCAAAAAACACCAAAGAATTGGAACA----GCTTTCTCTTACCAGACATCGAACAATA--GC-AAA---AAAACGGAAACGGTTT---TAG---AATTATCTAAGTCAGC--TGATTGTGACGA---TTGAGA--TCAAC-AGATAAGCATTCT--TGTACCAC---------GTG---GTGAAA--ATGT-CGCCTAACGCAAAA---GCAA-TGTAAAC-ACTACGC-T-TTGTTATCCT-CTTGGATAACCCCACG-AA--AG-CTGACAAAGGAATTTTTATTCCACGCCCAAGCATTGTGACAGTCAATGGTATT---GCTGTTTACATTGTACAG-AAACAGTATACTAAATGTTGTAGTATTTTAGCAGTTTCGGACCTTTTGC-ACAACT-TGGC--TTAGATAG-----AAT-TTGTG--GATAGGTTA-TGACCGAA-----A-AAAAGAC--TTT---CGCTG---GCCCCC--GACAA-CACAGATATT--GGAGCA-TCT----TTGGGG--ATT--CCGGTC--TCTGCCTTACCA---TTTTTCC--CACGCTTTTACA-GGATGTGAATTAC---GTCAG-CATTT-----C-GAGGG---AGGCAAAAAAAAAAAAAAAAAAAAAAAAACCAG------CATGA----CAGACCTGG----------C--AGATG--TTACAGAAGT-ATTCA-----CTCGCG----CTTGGCAT--GACAACC--TGTATC----GATTTCAGAAGATGACATT-GA-GATC-CTG-GAGG-CCT-T-----TGTGTGC---ATTTTATATGACAG-GG-AA---CTACATTTGCGGTCAATGAGGCACGCTTTGAATTGTTCTCAAAGA-AAA-CAAC-GCACCTTCGAT-GCTATCCCCCCCCCCCACGGACTAGAAATGCTTTACTCCAGCACATCAAGAGGGCATCA-TACCAGGTGGACATA-A-TGGAGC--AGATGTGACATGTA--------TTACATGTTACAATGACACTGGC-----CTAGTC----CTGAACACT----GGTGTTGGG-TG-AAGAC-AAGGCGA----TGGAA--TATG-GAA-A---------------------AGTACCTT---C-TGTT-----GCAGCATC--------------------------ATGT-C---ATTG-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTAAA-TGCTACCGTTC-T-GGACTTCCATGT-A--AGGT--TTG-TGTACCTGT---------AATTTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAA
gi|4 : ACAGA-CTCATTCAAATATAGCGCGATAATT-TGCTAACGTTAACTTTACGCGGTTCGTAAGACTGCTAAAGTATTTTCA--AACATGGC-GATTGATCAAGCTCACAAACAGAACAACGTTTGATATAGGGAGATGGTGGTGCTATCGGATTAACTGAGGACCCGTCAGCTCTGTGGCGTAGGATGGTAGCTGGATCAGAGAT---------CAGCCGGTTGGTAGATGAATTTGAAAACGTCGTTAGTTCCAGTAACCCCTTG-GAAGACGACAA-ACACTATGACGTTACAATACCGTCACAAAAAGCC-TTCTTAGAGAGA-----TAAAAAGGCTTGTC-AAGCCTG-TGAACGATT--TTGG-A--AAT---CCTTTTCTA----GA--GGAGTCATCAG--ACCTGTA-TAAGCTTGATACAAAGG---ATGC---TG---TCGATTCAGACA-TAGCTACCATCGATACTT--TAAGATAT--ATTGGAGCAAAGCA---A--------TATACCG-AG-TTCTT----AGAT--AGGATCA---C--AAATGAGGGGCAAC--CTGACTTATTCTATG-ATCATAATTATAAAA-AAA-G----AAT-AACTTT---CCTTT-ATTCAGCC---GAA---AAGCGAAACCAAA-TCCTGG-AT-CG-T-----CGA-AAGAAAAGCT-T--CATCAATT---GAAAA-ATGA-T---T--A------T--AAT-CTGT--TTTC--TA--GCT---TTTC-ATT-TCTTGCCAAAGCA-GACAG-TG----CGATA-TGGAAG--GT--TTTTTCAGT-CA-TG-AAAA-TC--AAAAT-A-CTCTTCC--TTC-ATTGTCACAG-GAT--GGGA--ACT--TA-TACACCGG----AGACTCCGAGTAAAGCCTCAGT-TAA--TG--G-AT-GTA-TTCGAAG-C--AAATGT---TGA--TG-TTC-CAGC-AA-GAGATCC--AG-ATTC--T----AAAGCCTTTAAAAT-TAT-TGATG-GC----GCAGCGATGATGGATTCAAAACCACCACAAGG-ATCAAAG--ACATTTG----ATGACTATG-----CAAA---AGA-TG--TTA-------TTCT-GCCAT-ACA--T-AGACTCC--TGTTTGA
gi|5 : TCGGG-TGACAAACAAAGGCAGCCCGTAGAAAATATGCGAAGA-CAT-AAAATATGCACATATCATTGCCATATAC-TGCTCACATGCACAGTCTCCCTGATA-A-AGAAA-TTTTAGAAATGT-GAAGGTTGACAAAAAATACAAAATCTGTAACATTTGG-TAAGTGTAAAATGCTACCGTTCATGGGACTTCTATGT-ACAAGGTGCTTG-TATACTTGTATCCTATGAAA-TTGTCGAGTTCTATTATATGAATG-TTC
gi|6 : GTCTCAA-AGCA-AA-TACC-AGGACAAA----GAGAGGCCCTGGTGTT--AGcacattgggttaagcacgtagccaatcgattgacaaatgcagcctatactagtaaaagaataaaatggctcaaaaaaacaaatttcccataaccgcgtaacgcggtgactgtatttgaaattttttgttggaaatagattataaaatatcctatttgagcattccaggtcacattgtgaaaaccggagtatagctatattgattttgttatctttagtgccattgcatacatagtatttatacttcatctatagcagtgaaaatcaccaattacagacataaaatatatacgccagacacacatcaaaagtaataaccgatcattgaccgagtttatatatgaataataacgagtaaatgtaataaatgtacaa
gi|6 : CAGTG--AC-AAC---AAAACGGAACT--TTT---TAG---ATTTAT--AAGTCAGC--TGATTTTGACCA---TTGAGA--CCAAC-AGACAAGTATT-TG-TA-ACTCT---------G-G---GTGAAA--ATGT-C--CTAAC-CAAT----GCAAATGTAGAC-ACTATGC-TGTTGTT---CC-CTTG--TAACC--ACG-AAGAAG-CTGACTCAAGAATGTTGATTC-ACGTC-AAGCATGCTG-CAGTCAATGGTTGTAAGGCTGTTTCCA-TGTACAGTA--CAG-ATACTGA-TGTTGTA-CGTTTT-GCAGTTTCA-ACC-TTTGC-ACAACT-TGGC--TTAGATAA-----A---TTGTG--GATATATTA-TGGTCGAA-----AC-AAAGAC--TTT---CGCTG---GCTCCC--GATACT--C-GATATT--GGAGCA-TCT----TTGGGG--ATT--CCAGTC--TCTGannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgacaacaaaacggaactttttagatttataagtcagctgattttgaccattgagaccaacagacaagtatttgtaactctgggtgaaaatgtcctaaccaatgcaaatgtagacactatgctgttgttcccttgtaaccacgaagaagctgactcaagaatgttgattcacgtcaagcatgctgcagtcaatggttgtaaggctgtttccatgtacagtacagatactgatgttgtacgttttgcagtttcaacctttgcacaacttggcttagataaattgtggatatattatggtcgaaacaaagactttcgctggctcccgatactcgatattggagcatctttggggattccagtctctg
gi|7 : gtctcaaagcaaataccaggacaaagagaggccctggtgttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATGCTTTACTCTAGCACATCAAGAGGGCAACATTGCAAGGTGGACATGTA-TGGAGCCAAGTTGTGACATGTA--------AT-CA---------------GAC-----AATGTCGGGTCTGAACACTG---GG-GTTGGG-TGAAAGACAAAGGCAA----TGGAA--TATG-GAA-A-C-CCAAA---TGCACAT--CATTACCTT---C-TGTT-----GCAGCGTC---CTG-TACA-G--AACTTTT-GAAATGT-G---GTTG-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTAAA-TGCTACCGTTC-T-GGACTTTTATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCGTATTAC-GACCATCTGATACAATGCA-CCTTAA---GTAAAA
gi|8 : A-TGGAGCCAAGATGTGACATGTAATTACATGTTACAAT-------------GACACTGCCTAGTC----CTGAACACTG---G-TGTTGGG-TGAAAGACAAAGGCGA----TGGAA--TATG-GAA-A---------------------AGTACCTT---C-TGTT-----GCAGCATC--------------------------ATGT-C---ATTG-CAAAAAAT-CAAATTGTGT------TGG-TAACTGTAAA-TGCTACCGTTC-T-GGACTTCCATGT-AC-AGGT--TTG-TGTACCTGT---------AA-TTGTC-AGATCTA----ATGAA-G-TTCACCTTATTAT-GACCATCTGATGCAATGCG-CCTTAA---G-AAAAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CAAAAATGTGACCGTATTTGAAATTTTTCATTGTGTCAATAAGATTTTAGATATTCAGTTTACCAATCTGCAGGCGCTATTTAAAACCGTAAAGTTGCATTATTTTGTTTTAATGGCAATTATATTTATATCAGAAACCCATCAGACATAGAATTAAAGACACCACACCACCAAATTTACGATTTGACGCAGTTTTTTATGATAAATATAATGCTAATAATTTACGA
Unaligned ( gi|11 ): ATGTGACCTGTATTTGAAATTTTTATTGTTGTAAATAAGATTTAGATATCAGTTTTACCATTCAGGCGCTATTTTAAAACCGGAAGTTGCATTTATTTTGTTTTAATGGCAATATTTATATATCAGAAAACCATACAGACATAGAATTAAAGACACACACCACAAATTTTACGATTTTGACGGA
Unaligned ( gi|15 ): TGTGACCTGTATTTTTCAATTGTTGTAAATAAGATTTAAATATCAAGTTTTACATTCAGGCGCCATTCCTGAAACCGGAAGTTGCATTTATTTTGCCGAAATTTTTTATGATAATA