lowQualScore : 1 44444444444 222 4444444
lowQualScore : 3 3 1 555 2 33 2 7 11111111111 99 6 111 6 0000000 7
lowQualScore : . . . ... . .. . . ........... .. . ... . ....... .
lowQualScore : 3 3 3 888 7 77 7 1 88888888888 22 7 888 0 8888888 3
consensus : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAG--C-C---NAGG--TCATTGAGAAG-ATAT--ACCT-------TGTATGAGGAAAAAGTTC
Reference ( gi|3 ) : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTC-AAG--CGC---AACG--TCATTGAGAAG-ATAA--ACTT-------TGTATGAGGAAAAAGTTC
gi|1 : TTCAA-CAGTT-TAAG---AAATTTCGTTC-TGGT--A-C-TCTCAAAG--C-C---AAGGTTTCATTGAGAAG-ATTACTACCT-------TGT-TGAGGAAAAAGTTC
gi|2 : cttgtatatgaaaataaaacacttcaatatgtatacaatatTTCAA-CAGTT-ATTG---AA-TTTCGTTT-CGAT---TC-TATC-AAA---GC---CAGG--TCAATGAGAAG-ATAT--ACCT-------TGct
gi|15 : gtatatgaaaaataaacttcattTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|14 : catttcaacaatatTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|8 : tcatttcagcaatatTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|10 : aaaataaacttcatttcaacaatatTTCAA-CAGTT-ATTG---AACTTTCTTTC-TGAT--ATA-TCT
gi|17 : atatgataataaacgtaatTTCAAACAGTT-AT-G---AACTTTCGTTC-TGAT--ATCTTCTC-A
gi|11 : ataaTTCAA-CATTT-ATTG---AACTTTTGTTC-TAAG--ATC-TC
gi|16 : ccttcactttaacaatatTTAAA-CAATT-ATTG---AACTTTCGTTC-TTAG--ATC-TC
gi|6 : ctttaacaatatTCCAA-CAGTT-AA-G---AACTTTCGTTCATGATTAATC-TCTc
gi|18 : tcttgtatatgaaaataaaacacttcatttaacaatatTTCAA-CAGTT-ATTG---AACTTT
gi|4 : gattcatttcaacaatatTCAA-CAGTTGACTGTGAAACTTTCGTTC-TGAT--AT--TCT
gi|9 : tatatcttgtgtttgaaaataaacttcatttcaacaatataACTTTCGTTC-TGAT--ATC-TCTC-AAAGCCACCTTAAGG--TCATTGAGAAG-ATAT--ACCT-------
gi|7 : CTTTCGTTC-TGAT--ATC-TCTC-AAG--C-C---TATG--TCATTGAGAAGAATAT--ACCTTGTACA-TGTATGAGGAAAAAGTTC
gi|5 : CTTTCGTTC-TGAT--ATC-TCTCAAAG--C-C---TATG--TCATTGAGAAG-ATAT--ACCTTGTACAATGTATGAGGAAAAAGTTCa
gi|13 : CTTTTGTTC-TGAT--AGC-TCTCAAAG--C-C---AAGG--TCATGGAGAAG-ATAT--ACCT-------a
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TAATCTTGTATATGGACCCAATAAACTTTCATTTCAACAATATTTCACCA
Alignments
lowQualScore : 222222 3333333
lowQualScore : 3 3 0 555 2 33 2 3 5 000000 0 77 5 5 5 5555555 3
lowQualScore : . . . ... . .. . . . ...... . .. . . . ....... .
lowQualScore : 1 1 5 444 5 44 5 2 7 999999 7 99 7 7 7 0000000 2
consensus : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
Reference ( family-7092 ) : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----NAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
gi|1 : TTCAA-CAGTT-TAAG---AAATTTCGTTC-TGGT--A-C-TCTCAAAGC-C-----AAGGTTTCATTGAGAAG-ATTACTACCT-------TGT-TGAGGAAAAAGTTC
gi|10 : cttgtatatgaaaataaaacacttcaatatgtatacaatatTTCAA-CAGTT-ATTG---AACTTTCTTTC-TGAT--ATA-TCTct
gi|11 : atatgataataaacgtaatTTCAA-CATTT-ATTG---AACTTTTGTTC-TAAG--ATC-TC
gi|13 : ccttcactttaacaatatCTTTTGTTC-TGAT--AGC-TCTCAAAGC-C-----AAGG--TCATGGAGAAG-A-TA-TACCT-------
gi|14 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|15 : tcatttcagcaatatTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|16 : catttcaacaatatTTAAA-CAATT-ATTG---AACTTTCGTTC-TTAG--ATC-TC
gi|17 : ctttaacaatatTTCAAACAGTT-AT-G---AACTTTCGTTC-TGAT--ATCTTCTCAc
gi|18 : ataaTTCAA-CAGTT-ATTG---AACTTT
gi|2 : gattcatttcaacaatatTTCAA-CAGTT-ATTG---AA-TTTCGTTT-CGAT---TC-TATCAAAGC-C------AGG--TCAATGAGAAG-A-TA-TACCT-------TG
gi|3 : gtatatgaaaaataaacttcattTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTC-AAGCGC-----AACG--TCATTGAGAAG-A-TA-AACTT-------TGTATGAGGAAAAAGTTC
gi|4 : TCAA-CAGTTGACTGTGAAACTTTCGTTC-TGAT--AT--TCT
gi|5 : tatatcttgtgtttgaaaataaacttcatttcaacaatataCTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----TATG--TCATTGAGAAG-A-TA-TACCTTGTACAATGTATGAGGAAAAAGTTC
gi|6 : TCCAA-CAGTT-AA-G---AACTTTCGTTCATGATTAATC-TCTa
gi|7 : tcttgtatatgaaaataaaacacttcatttaacaatatCTTTCGTTC-TGAT--ATC-TCTC-AAGC-C-----TATG--TCATTGAGAAGAA-TA-TACCTTGTACA-TGTATGAGGAAAAAGTTC
gi|8 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCa
gi|9 : aaaataaacttcatttcaacaatatACTTTCGTTC-TGAT--ATC-TCTCAAAGC-CACCTTAAGG--TCATTGAGAAG-A-TA-TACCT-------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATCTTGTATATGGACCCAATAAACTTTCATTTCAACAATATTTCACCA
Alignments
lowQualScore : 11111 3333333
lowQualScore : 3 3 0 555 2 33 2 3 5 44444 0 77 5 5 5 5555555 3
lowQualScore : . . . ... . .. . . . ..... . .. . . . ....... .
lowQualScore : 1 1 5 444 5 44 5 2 7 33333 7 99 7 7 7 0000000 2
consensus : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
Reference ( family-7092 ) : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
gi|1 : TTCAA-CAGTT-TAAG---AAATTTCGTTC-TGGT--A-C-TCTCAAAGC-C-----AAGGTTTCATTGAGAAG-ATTACTACCT-------TGT-TGAGGAAAAAGTTC
gi|10 : cttgtatatgaaaataaaacacttcaatatgtatacaatatTTCAA-CAGTT-ATTG---AACTTTCTTTC-TGAT--ATA-TCTct
gi|11 : atatgataataaacgtaatTTCAA-CATTT-ATTG---AACTTTTGTTC-TAAG--ATC-TC
gi|13 : ccttcactttaacaatatCTTTTGTTC-TGAT--AGC-TCTCAAAGC-C-----AAGG--TCATGGAGAAG-A-TA-TACCT-------
gi|14 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|15 : tcatttcagcaatatTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|16 : catttcaacaatatTTAAA-CAATT-ATTG---AACTTTCGTTC-TTAG--ATC-TC
gi|17 : ctttaacaatatTTCAAACAGTT-AT-G---AACTTTCGTTC-TGAT--ATCTTCTCAc
gi|18 : ataaTTCAA-CAGTT-ATTG---AACTTT
gi|2 : gattcatttcaacaatatTTCAA-CAGTT-ATTG---AA-TTTCGTTT-CGAT---TC-TATCAAAGC-C-----A-GG--TCAATGAGAAG-A-TA-TACCT-------TG
gi|3 : gtatatgaaaaataaacttcattTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTC-AAGCGC-----AACG--TCATTGAGAAG-A-TA-AACTT-------TGTATGAGGAAAAAGTTC
gi|4 : TCAA-CAGTTGACTGTGAAACTTTCGTTC-TGAT--AT--TCT
gi|5 : tatatcttgtgtttgaaaataaacttcatttcaacaatataCTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----TATG--TCATTGAGAAG-A-TA-TACCTTGTACAATGTATGAGGAAAAAGTTC
gi|6 : TCCAA-CAGTT-AA-G---AACTTTCGTTCATGATTAATC-TCTa
gi|7 : tcttgtatatgaaaataaaacacttcatttaacaatatCTTTCGTTC-TGAT--ATC-TCTC-AAGC-C-----TATG--TCATTGAGAAGAA-TA-TACCTTGTACA-TGTATGAGGAAAAAGTTC
gi|8 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCa
gi|9 : aaaataaacttcatttcaacaatatACTTTCGTTC-TGAT--ATC-TCTCAAAGC-CACCTTAAGG--TCATTGAGAAG-A-TA-TACCT-------
blockSeqs : A G TGA A TA T A G ACCTT . A . . TGTACAA A
blockSeqs : . . . . . . A . . . . . . TGTACA A
blockSeqs : . . . . . . A . . . . . . . A
blockSeqs : . . . . . . A . . . . . . .
blockSeqs : . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : **
originalCons : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
finalCons : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATCTTGTATATGGACCCAATAAACTTTCATTTCAACAATATTTCACCA
Alignments
lowQualScore : 11111 3333333
lowQualScore : 3 3 0 555 2 33 2 3 5 44444 0 77 5 5 5 5555555 3
lowQualScore : . . . ... . .. . . . ..... . .. . . . ....... .
lowQualScore : 1 1 5 444 5 44 5 2 7 33333 7 99 7 7 7 0000000 2
consensus : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
Reference ( family-7092 ) : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----AAGG--TCATTGAGAAG-A-TA-TACCT-------TGTATGAGGAAAAAGTTC
gi|1 : TTCAA-CAGTT-TAAG---AAATTTCGTTC-TGGT--A-C-TCTCAAAGC-C-----AAGGTTTCATTGAGAAG-ATTACTACCT-------TGT-TGAGGAAAAAGTTC
gi|10 : cttgtatatgaaaataaaacacttcaatatgtatacaatatTTCAA-CAGTT-ATTG---AACTTTCTTTC-TGAT--ATA-TCTct
gi|11 : atatgataataaacgtaatTTCAA-CATTT-ATTG---AACTTTTGTTC-TAAG--ATC-TC
gi|13 : ccttcactttaacaatatCTTTTGTTC-TGAT--AGC-TCTCAAAGC-C-----AAGG--TCATGGAGAAG-A-TA-TACCT-------
gi|14 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|15 : tcatttcagcaatatTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TC
gi|16 : catttcaacaatatTTAAA-CAATT-ATTG---AACTTTCGTTC-TTAG--ATC-TC
gi|17 : ctttaacaatatTTCAAACAGTT-AT-G---AACTTTCGTTC-TGAT--ATCTTCTCAc
gi|18 : ataaTTCAA-CAGTT-ATTG---AACTTT
gi|2 : gattcatttcaacaatatTTCAA-CAGTT-ATTG---AA-TTTCGTTT-CGAT---TC-TATCAAAGC-C-----A-GG--TCAATGAGAAG-A-TA-TACCT-------TG
gi|3 : gtatatgaaaaataaacttcattTTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCTC-AAGCGC-----AACG--TCATTGAGAAG-A-TA-AACTT-------TGTATGAGGAAAAAGTTC
gi|4 : TCAA-CAGTTGACTGTGAAACTTTCGTTC-TGAT--AT--TCT
gi|5 : tatatcttgtgtttgaaaataaacttcatttcaacaatataCTTTCGTTC-TGAT--ATC-TCTCAAAGC-C-----TATG--TCATTGAGAAG-A-TA-TACCTTGTACAATGTATGAGGAAAAAGTTC
gi|6 : TCCAA-CAGTT-AA-G---AACTTTCGTTCATGATTAATC-TCTa
gi|7 : tcttgtatatgaaaataaaacacttcatttaacaatatCTTTCGTTC-TGAT--ATC-TCTC-AAGC-C-----TATG--TCATTGAGAAGAA-TA-TACCTTGTACA-TGTATGAGGAAAAAGTTC
gi|8 : TTCAA-CAGTT-ATTG---AACTTTCGTTC-TGAT--ATC-TCa
gi|9 : aaaataaacttcatttcaacaatatACTTTCGTTC-TGAT--ATC-TCTCAAAGC-CACCTTAAGG--TCATTGAGAAG-A-TA-TACCT-------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAATCTTGTATATGGACCCAATAAACTTTCATTTCAACAATATTTCACCA