lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444 22222 222 11111 2222222222 1 222 222 2 44 77777777777 11111111 111 55555 222 1111 44444444444 222222222 33
lowQualScore : 6 4 4 4 66 4 99999999999999999999999999999999999999999999999999999999999999999999999999 0 4 3 88 77777 3 1 3 3 3 9999 7777 3 3 666 4 4 77 4 11111 4 4 9999999999 77 5 4 4 3 55 2 4 777 1 99 77 111 5 999 0 77 2 3 33333333333 99999999 6 444 22222 8 555 3 0000 77777777777 555555555 33 3
lowQualScore : . . . . .. . .......................................................................... . . . .. ..... . . . . . .... .... . . ... . . .. . ..... . . .......... .. . . . . .. . . ... . .. .. ... . ... . .. . . ........... ........ . ... ..... . ... . .... ........... ......... .. .
lowQualScore : 0 4 4 4 11 4 66666666666666666666666666666666666666666666666666666666666666666666666666 8 0 6 66 77777 6 4 6 6 6 9999 7777 6 6 555 0 0 22 0 11111 4 4 4444444444 99 7 4 4 6 00 5 0 999 4 66 99 000 7 333 3 22 5 0 00000000000 33333333 5 000 44444 0 888 2 2222 00000000000 888888888 88 2
consensus : NTAAAATAGGAGAGG-CAGTT-A-AT--GTTGC-CGT----CC------CC---CTCTCATGCAAACAG-TAAA-AC-ATTATTT---G-T----C--AATAATAAA--GATTGGAAAT-T-A--AA--TT-TTG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-T-AT-G-TATACAAATA-GC-TG-A-AAACG-----AA-C-TTTTGATTACGAC--CC--C-AAAA-ATCTAA-TCGCA-C--AGNGTCCGAGT-CA-CAGCTC-GAAG--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAAT-TTTAGAAGACGGG
Reference ( gi|2 ) : ATGAAATAGGAGAGG-CAGTT-A-AT--GTTGC-CGT----TC------CT---TTCTCATGAAAACAG-TAAA-AC-ATTATTT---A-T----C--AATAATTAA--AATTGGAAAT-T-A--AA--TT-TTG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-T-AT-T-TATACAAATA-GC-TG-A-AAACG-----AA-C-TTTTGGTTACTAC--CC--C-AAAA-ATCTAA-TCGCA-C--AGCGTCCAAGT-CACCAGCCC-AAAG--T-C-G-TGTACTACGTTTGAAAATTGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAACGGTC---TCA---T-CACCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAG
gi|6 : TAAAATAGCACAGG-CAGTT-A-CT--GTTGC-CGC----TG------TT---ATTTCATGCAA-CAG-TAAA--C-AGTATGT---G-T----TG-AATGATAGA--TATTGGAAAT-T-A--AAA-TTGTTG-TATTTGTTAATC-ATGT-AT-C-TA-TATG----G-T-ATATGTATACAAATC-GC-TA-A-AAACT-----AA-CATTTTGA-TACGAC--CT--C-AAAA-TTCTAT-TCGCA-C--AG
gi|7 : tgTAAAATAGGAGAGG-CAGTT-A-AT--GTTGC-CGC----TG------CA---CTCTTATG-TAACAA-TACA-AC-TTTAGTT---GTT----C--TATA--------------------A--GA--TT-TTG-TATC----------------------TACG----G-T-AT-A-TATACAAATA-GC-TG-A-AAACG-----AA-C-TTTCGATT-CGAC--CC--C-GAAA-ATCTAA-CCGCA-C--AAAGTCCGAGTACACTAG
gi|8 : gTAAAAT-GGAGAGG-CAGTT-A-AT--GCTGTTCGT----GC------CC---CT-TCATGCA--CAG-TAAA-AC-AT-ATTT---G-TGTTTC--AATAAATAACAGATTGGAAAT-T-A--AAAATTGTTG-TAATTGT-AATCCATGT-ATTC-GAATATG----G-T-AC----ATACAAATA-GC-TG-A-AAACGTCTTAAA-A-TTTTGaaatgtc
gi|5 : TAAAATAGTAGAGGGCAGTT-ACAT--GTTGC-CG-------------CT---GTCCTAT-----CAG-TAA-------TA-----------------------AA--GACTGGGAAT-TAA--AA--TG-TTG-TATATGTTATTC-A--T-AT-C-------------------------CAAA-A-GA-T-----AATA-----TA-C-TTTTTTTTAATACAACCCGC-AAAA-ATATAATTCGCA-CTGAG-GTCCGAAT-CAca
gi|1 : tgAAATAGGA-AGG-CAGTT-A-ATATGTTGC-CGT----TTGCACCACA---TTCTCATGCAA-CAG-TAAA-AC-ATTAATT---A-T----TCAAATAA--AC--GATTGGAAAT-T-AACAA--TG-TT--TATTT-TTAATC-ATGT-AT-C-GA-TATG----G-TAATGT-TATACTAATA-GCTTG-ACAAACG-----AA-C-ATTTGA-TACAAC--CC--CAAAAA-ATCTAA-T-GCACC--AGCGTCCAAGT-CA-CAGCTC-GAAGTAT-G-G-TGTACTACATTAGAAA--TGTCTAATAgggctcgaaaatacggtgtatatacaagaaagtc
gi|19 : atgttAAATAGGAGATG-CAGAA-A-AT--GCTAC-CA-----CC------CC---CTCTCATG-CAACAG-TAAA-AC-TTTAGTT---GTT----C--AATAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|17 : AAGTAGG-GAGG-CAGTT-A-AG--GTTGT-CGTGGTGCC------CT---CCATCATG-CAACAGTTAAA-ACAATTATGT---GTT----C--AATGAca
gi|10 : AATAATAGAGG-C---T-A-AT--ATTAT-TGA----CC------CTGCCCTCTCATG----C------A-AC-A-TGTTTGAGA-TG---A--AATAATAAA--GATTGGGAAT-T-A--A-----------ATTTGTTAATG-ATGT-AT-C-TA-TATG----G-T-AT-G-TGTACAAATA-GC-TA-A-a
gi|3 : ATAGGAGAGG-CAGTTTA-AT--GTTGC-CGT----TG------CC---TTCT-ATGCAAACAG-TAAAGAT-ATGA-TT---A-T----T--CTTAA-TAA--AA-TGGAAATGT-A--AAATTT-CTGTTATTTGTT-GTC-ATGTCAT-CAGA-CTTG----G-T-ATGT-TATACAAATA-GC-TGTA-AAACG-----AA-C-TTTTG---ACTA---CC--C-AAAA-ATCTA---TGCA-C--AG-GT--AAGT-CACC-GCCCGAAGG--T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|21 : tgtaaat-T----C--AATAATAAA--GATTGGAAAT-T-AG-AA--TG-TTG-TATTTGTTAATC-AGAT-AT-C-GA-TATG----A-T-Atgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|13 : tttgt----C--AATAGTAAA--GATTGGAAAT-T-A--AAA-TG-GTG-TAATTGTTAATC-ATAT-AT-C-GA-TATG----G-T-AT-G-TATACACATA-GC-TG-A-AAACG----------TTTT
gi|9 : TAGAAAT-T-A--AA--T--------------AAAC-ATGT-AC-A-TG-TATGTTTTG-T-AT-G-TATATAGAAA-GC-TG-A-AAAAA-----AAAC-TTTTGAT-ACGGC--AC--A-AAAA-ATCTAA-TCGCA-C--AGAGTCCAAGT-AAGT-GCTC-GAAG--T-T-G--GTG-TACGCTAGAAAaaatttatgcaggtatataa
gi|11 : aaga-A--AA--TTGTTG-TATTTGTTA-TC-ATGT-AT-T-TA-TATG----AAT-AT-G-TATACAAATAAGG-T--A-AAACG-----AA-C-TTTT-TTTAATACAAAC--C-AGAATAGCTAA-TCGCA-C--TGGGTCCGAGT-CAtc
gi|23 : aaAAA-ATCTAA-TCACA-C--AAAGTCCGAGT-CA-GAGCTT-GGAG--TCC-G-TG---TACGCTAGAAA--TGTCgaatctcga
gi|22 : gAAA-ATCTAA-TCACA-C--AAAGTCCGAGT-CA-GAGCTT-GGAG--TCC-G-TG---TACGCTAGAAA--TGTC
gi|15 : gCA-C--AGCGTCCAAAT-CA-CAGCCC-GAAG--T-CGG-TGTACTACGTT--ACAAATGTCTGATA
gi|16 : -C--AGCGTCCAAGT-CA-CAGCTC-GAAG--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|4 : TACAAGGGGTCATATCACCGT-CACCC-------CCCTT--AT---TTACAAAT----GAGG-AAGA--TAATGGA---TTTT----------TTTGTTT-----GCGCGGCAT--TTC--AAGACGGGtgccaacgttcatgtacaaggcatt
gi|14 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagACAAACGGGC---CAA---TACACCCTCCCCCC---TTCAATGATTTAGAAATATGA-AGA-AAAGGATAACGGAtt
gi|1 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCCCCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAA
gi|12 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAAT-TTTAGAAGACGA
gi|20 : AT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAAT-TTTAGAAGACGtttctccttcgactgtctcaacacat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 2222222222 1111111 111 111111 22222 11111 11111 1111111111 33333333333 111111 111 33333333333 22222
lowQualScore : 4 4 4 4 55 4 3333333333 0000000 1 666 4 4 4 4 3 4 888888 3 0 3 3 3 3 77 33333 3 3 3 3 3 55 3 7777 3 3 8888 3 3 3 55 3 00000 444 88888 3 666 4 3 4 3 55 3 8888888888 4 1 6 66 1 1 88888888888 888888 2 3 111 9 6 888 1 11 0 55555555555 00000 8 0 88 0
lowQualScore : . . . . .. . .......... ....... . ... . . . . . . ...... . . . . . . .. ..... . . . . . .. . .... . . .... . . . .. . ..... ... ..... . ... . . . . .. . .......... . . . .. . . ........... ...... . . ... . . ... . .. . ........... ..... . . .. .
lowQualScore : 0 0 0 0 55 0 9999999999 5555555 6 999 0 0 0 0 1 4 111111 3 4 3 6 6 6 99 22222 3 3 3 3 3 88 3 1111 3 3 4444 6 6 6 66 6 00000 666 77777 7 222 0 3 5 6 00 6 2222222222 4 9 7 11 0 0 00000000000 222222 5 2 777 8 7 777 0 88 8 88888888888 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTGC-CGT----T----CC---CC--TCTCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TA--AAA-TT-TTGT-ATTTGTTAATC-ATGT-AT-C-GA-TATG----G-T-AT--G-T-ATACAAATA-GC-TG-A-AAACG-----AA-C-TTTTGA--T--TACGACCC-C-AAAAATCTAAT-CGCA-CAGNG-TCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCC-CCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTGC-CGT----C----CC---CC--TCTCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TA--AA--TT-TTGT-ATTTGTTAATC-ATGT-AT-C-GA-TATG----G-T-AT--G-T-ATACAAATA-GC-TG-A-AAACG-----AA-C-TTTTGA--T--TACGACCC-C-AAAAATCTAAT-CGCA-CAGNG-TCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCC-CCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAGTT-A-ATATGTTGC-CGT----TTGCACC---ACATTCTCATGCAA-CA-G-TAAA-AC-ATTAATTATT----C-A--AA-TAA-ACGATTGGAAAT-TAACAA--TG-TT-T-ATTT-TTAATC-ATGT-AT-C-GA-TATG----G-TAAT--GTT-ATACTAATA-GCTTG-ACAAACG-----AA-C-ATTTGA-----TACAACCC-CAAAAAATCTAAT--GCACCAGCG-TCCAAGTCA-CAG-CTCGAA---GTAT-G-G-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCC-CCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-C---T-A-AT--ATTAT-TGA----C----CCTGCCC--TCTCATGCAA-CATG-TTTG-AG-ATGA------------AATAA-TAA-A-GATTGGGAAT-TA--AA--TT-T--------GTTAATG-ATGT-AT-C-TA-TATG----G-T-AT--G-T-GTACAAATA-GC-TA-A-
gi|11 : A--AA--TTGTTGT-ATTTGTTA-TC-ATGT-AT-T-TA-TATG----AAT-AT--G-T-ATACAAATAAGG-T--A-AAACG-----AA-C-TTTTTT--TAATACAAACC-A-GAATAGCTAAT-CGCA-CTGGG-TCCGAGTCA-GAATCTCGA
gi|12 : aaCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : ----C-AATAG-TAA-A-GATTGGAAAT-TA--AAA-TG-GTGT-AATTGTTAATC-ATAT-AT-C-GA-TATG----G-T-AT--G-T-ATACACATA-GC-TG-A-AAACG----------TTTTAAATT--TATGatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTC-CCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGG-ATAACGGAcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCA-CAGCG-TCCAAATCA-CAG-CCCGAA---G--T-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : -CAGCG-TCCAAGTCA-CAG-CTCGAA---G--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAGTT-A-AG--GTTGT-CGTGGTGC----CC---TC--CATCATGC-AACA-GTTAAA-ACAATTATGTGTT----C-AATGA-tgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAGAA-A-AT--GCTAC-CA-----C----CC---CC--TCTCATGC-AACA-G-TAAA-AC-TTTAGTTGTT----C-AATAA-CAa
gi|2 : TGAA-ATAGGAGAGG-CAGTT-A-AT--GTTGC-CGT----T----CC---TT--TCTCATGAAAACA-G-TAAA-AC-ATTATTTA-T----C-AATAA-TTA-A-AATTGGAAAT-TA--AA--TT-TTGT-ATTTGTTAATC-ATGT-AT-C-GA-TATG----G-T-AT--T-T-ATACAAATA-GC-TG-A-AAACG-----AA-C-TTTTGG--T--TACTACCC-C-AAAAATCTAAT-CGCA-CAGCG-TCCAAGTCACCAG-CCCAAA---G--T-C-G-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcaAT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG-TT---C-AATAA-TAA-A-GATTGGAAAT-TAG-AA--TG-TTGT-ATTTGTTAATC-AGAT-AT-C-GA-TATG----A-T-Ata
gi|22 : AAAATCTAAT-CACA-CAAAG-TCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAATCTAAT-CACA-CAAAG-TCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTGC-CGT----T----GC---CT--TCT-ATGCAAACA-G-TAAAGAT-ATGATTAT-T----C-T-TAA-TAA-A-A--TGGAAATGTA--AAATTT-CTGTTATTTGTTG-TC-ATGTCAT-CAGA-CTTG----G-T-AT--G-TTATACAAATA-GC-TGTA-AAACG-----AA-C-TTTTGA--C--TAC----C-C-AAAAATCTA---TGCA-CAG-G-T--AAGTCA-CCG-CCCGAA---GG-T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CA--------CCCCCCTT--AT---TTACAAAT---GAGGA-A---GATAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAGTT-ACAT--GTTG--------------CC---GC--TGTC-------------------------CTA-T----C-AGTAA-TAA-A-GACTGGGAAT-TA--AAA-TG-TTGT-ATATGTTATTC-AT---AT-C-CA-AAAG----A-T-A---A-T-ATAC-------T-T-----------------T-TTTTTA--A--TACAACCCGC-AAAAATATAATTCGCA-CTGAGGTCCGAATCA-GGG-CTCGAAAATA--C-G-G-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAGTT-A-CT--GTTGC-CGC----T----GT---TA--TTTCATGCAA-CA-G-TAAA--C-AGTATGTG-T----TGAATGA-TAG-A-TATTGGAAAT-TA--AAA-TTGTTGT-ATTTGTTAATC-ATGT-AT-C-TA-TATG----G-T-ATATG-T-ATACAAATC-GC-TA-A-AAACT-----AA-CATTTTGA-----TACGACCT-C-AAAATTCTATT-CGCA-CAG
gi|7 : tgTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTGC-CGC----T----GC---AC--TCTTATGT-AACA-A-TACA-AC-TTTAGTTGTT----C-TATA--------------------A--GA--TT-TTGT-ATC----------------------TACG----G-T-AT--A-T-ATACAAATA-GC-TG-A-AAACG-----AA-C-TTTCGA--T--T-CGACCC-C-GAAAATCTAAC-CGCA-CAAAG-TCCGAGT-A-CA--CTAGAA---A--T-
gi|8 : gTAAA-AT-GGAGAGG-CAGTT-A-AT--GCTGTTCGT----G----CC---CC--T-TCATGCA--CA-G-TAAA-AC-AT-ATTTG-TGTTTC-AATAAATAACA-GATTGGAAAT-TA--AAAATTGTTGT-AATTGT-AATCCATGT-ATTC-GAATATG----G-T-AC------ATACAAATA-GC-TG-A-AAACGTCTTAAA-A-TTTTGgtc
gi|9 : A-A-GAT-AGAAAT-TA--AA--T--------------AAAC-ATGT-AC-A-TG-TATGTTTTG-T-AT--G-T-ATATAGAAA-GC-TG-A-AAAAA-----AAAC-TTTTGA--T---ACGGCAC-A-AAAAATCTAAT-CGCA-CAGAG-TCCAAGTAA-GTG-CTCGAA---G--T-T-G--GTG-TACGCTAGAAA--Tca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 111111111 111 111111 1111111 11111111111 1111 1111111111 33333333333 111 33333333333 22222
lowQualScore : 4 4 4 4 55 44 666666666 0 55 55 666 4 4 4 4 3 4 777777 3 3 3 3 3 3 4444444 3 0 0 3 3 3 55 3 7777 3 888888 3 3 999 3 44444444444 1111 0 5 4 4 3 77 55 3 8888888888 4 1 6 66 1 1 88888888888 6 0 2 3 111 9 6 888 1 11 0 55555555555 00000 8 0 88 0
lowQualScore : . . . . .. .. ......... . .. .. ... . . . . . . ...... . . . . . . ....... . . . . . . .. . .... . ...... . . ... . ........... .... . . . . . .. .. . .......... . . . .. . . ........... . . . . ... . . ... . .. . ........... ..... . . .. .
lowQualScore : 0 0 0 0 55 77 666666666 7 55 55 999 0 0 0 0 1 4 888888 3 3 6 6 6 3 9999999 3 4 5 3 3 3 88 3 1111 3 555555 6 6 333 6 22222222222 9999 9 0 0 0 3 99 00 6 2222222222 4 9 7 11 0 0 00000000000 7 2 5 2 777 8 7 777 0 88 8 88888888888 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGT--T----NCCC--TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TAA-AA-TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--G-T-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGT--T----CCCC--TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TAA-AA-TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--G-T-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAG-TTA-ATATGTTGC-CGT--TTGCACCACATTC--TCATGCAA-CA-G-TAAA-AC-ATTAATTA-TT---C-AA--A-TAA-ACGATTGGAAAT-TAACAA-TG-T-T--TATTT-TTAATC-ATGT-AT-C-GA-TATG----G-TAAT--G-TTATACTAAT-AGCTTG-ACAAACG-----AA-C--ATTTGA--T-ACAACCC-CAAAAAATCTAA-T-GCACCAG-CGTCCAAGTCA-CAG-CTCGAA---GTAT-G-G-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCCCCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-CTA-ATA-TT--ATTGA-CCC--T----GCCC--TC--TCATGCAA-CATG-TTTG-AG-ATGA------------AATAA-TAA-A-GATTGGGAAT-TAA-A------------TTTGTTAATG-ATGT-AT-C-TA-TATG----G-TA-T--G-T-GTACAAAT-AGCT-A-A-
gi|11 : AA-AA-TTGT-TG-TATTTGTTA-TC-ATGT-AT-T-TA-TATG----AATA-T--G-T-ATACAAATAAGGT---A-AAACG-----AA-CTTTTTTTA--ATACAAACC-AGAATA-GCTAA-TCGCAC-TG-GGTCCGAGTCA-GAATCTCGA
gi|12 : aCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : ----C-AATAG-TAA-A-GATTGGAAAT-TAA-AA-TG-G-TG-TAATTGTTAATC-ATAT-AT-C-GA-TATG----G-TA-T--G-T-ATACACAT-AGCT-G-A-AAACG-----------TTTTAAATTTATGatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTCCCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGG-ATAACGGAcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCAC-AG-CGTCCAAATCA-CAG-CCCGAA---G--T-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : C-AG-CGTCCAAGTCA-CAG-CTCGAA---G--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAG-TTA-AG--GTTGT-CGTGGT----GCCC--TCCATCATGC-AACA-GTTAAA-ACAATTATGTGTT----C-AATGA-tgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAG-AAA-AT--GCTAC-CA---C----CCCC--TC--TCATGC-AACA-G-TAAA-AC-TTTAGTTGTT----C-AATAA-CAa
gi|2 : TGAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGT--T----CCTT--TC--TCATGAAAACA-G-TAAA-AC-ATTATTTA-T----C-AATAA-TTA-A-AATTGGAAAT-TAA-A--TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--T-T-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGG--TTACTACCC-CAAAAA-TCTAA-TCGCAC-AG-CGTCCAAGTCACCAG-CCCAAA---G--T-C-G-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCACCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatAT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG-TT---C-AATAA-TAA-A-GATTGGAAAT-TAG-AA-TG-T-TG-TATTTGTTAATC-AGAT-AT-C-GA-TATG----A-TA-ta
gi|22 : AAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTGC-CGT--T----GCCT--TC--T-ATGCAAACA-G-TAAAGAT-ATGATTAT-T----C--TTAA-TAA-A-A--TGGAAATGTAA-AA-TT-TCTGTTATTTGTT-GTC-ATGTCAT-CAGA-CTTG----G-TA-T--GTT-ATACAAAT-AGCT-GTA-AAACG-----AA-C--TTTTGA--CTA----CC-CAAAAA-TCTA---TGCAC-AG--GT--AAGTCA-CCG-CCCGAAG--G--T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CA-------CCCCCCTT--AT---TTACAAAT---GAGGA-A---GATAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAG-TTACAT--GTTG------------CCGC--TG--TC-------------------------CTA-T----C-AGTAA-TAA-A-GACTGGGAAT-TAA-AA-TG-T-TG-TATATGTTATTC-A--T-AT-C-CA-AAAG----A-TA----A-T-ATAC-------TT------------------T--TTTTTA--ATACAACCCGCAAAAA-TATAATTCGCAC-TGAGGTCCGAATCA-GGG-CTCGAAAATA--C-G-G-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAG-TTA-CT--GTTGC-CGC--T----GTTA--TT--TCATGCAA-CA-G-TAAA--C-AGTATGTG-T----TGAATGA-TAG-A-TATTGGAAAT-TAA-AA-TTGT-TG-TATTTGTTAATC-ATGT-AT-C-TA-TATG----G-TA-TATG-T-ATACAAAT-CGCT-A-A-AAACT-----AA-CA-TTTTGA---TACGACCT-CAAAAT-TCTAT-TCGCAC-AG-
gi|7 : tgTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGC--T----GCAC--TC--TTATGTAA-CA-A-TACA-AC-TTTAGTTGTT----C-------TA---------------TAA-GA-TT-T-TG-TATCT----------------------ACG----G-TA-T--A-T-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTCGA--TT-CGACCC-CGAAAA-TCTAA-CCGCAC-AA-AGTCCGAGT-A-CA--CTAGAA---A--T-
gi|8 : gTAAA-AT-GGAGAGG-CAG-TTA-AT--GCTGTTCGT--G----CCCC--T---TCATGCA--CA-G-TAAA-AC-AT-ATTTG-TGTTTC-AATAAATAACA-GATTGGAAAT-TAA-AAATTGT-TG-TAATTGT-AATCCATGT-ATTC-GAATATG----G-TA-C------ATACAAAT-AGCT-G-A-AAACGTCTTAAA-A--TTTTGgtc
gi|9 : A-A-GAT-AGAAAT-TAA-A-----------------TAAAC-ATGT-AC-A-TG-TATGTTTTG-TA-T--G-T-ATATAGAA-AGCT-G-A-AAAAA-----AAAC--TTTTGA--T-ACGGCAC-AAAAAA-TCTAA-TCGCAC-AG-AGTCCAAGTAA-GTG-CTCGAA---G--T-T-G--GTG-TACGCTAGAAA--Tca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 11111111 111 111111 1111111 11111 111111 1111111111 33333333333 111 111 33333333333 22222
lowQualScore : 4 4 4 4 55 4 00000000 777 55 666 4 4 4 4 3 4 777777 3 3 3 3 3 3 4444444 3 0 0 3 3 3 55 3 7777 3 888888 3 3 999 3 00000 444 555555 0 5 4 4 3 77 55 3 8888888888 4 1 6 66 1 1 88888888888 222 333 3 111 9 6 888 1 11 0 55555555555 00000 8 0 88 0
lowQualScore : . . . . .. . ........ ... .. ... . . . . . . ...... . . . . . . ....... . . . . . . .. . .... . ...... . . ... . ..... ... ...... . . . . . .. .. . .......... . . . .. . . ........... ... ... . ... . . ... . .. . ........... ..... . . .. .
lowQualScore : 0 0 0 0 55 0 33333333 000 55 999 0 0 0 0 1 4 888888 3 3 6 6 6 3 9999999 3 4 5 3 3 3 88 3 1111 3 555555 6 6 333 6 00000 666 111111 9 0 0 0 3 99 00 6 2222222222 4 9 7 11 0 0 00000000000 888 000 2 777 8 7 777 0 88 8 88888888888 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGC--TG---CC---CTC--TCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TAA-AA-TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--G-T-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTGA--T--TACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCC-CCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGT--TN---CC---CTC--TCATGCAAACA-G-TAAA-AC-ATTATTTG-T----C-AATAA-TAA-A-GATTGGAAAT-TAA-AA-TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--G-T-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTGA--T--TACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCC-CCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAG-TTA-ATATGTTGC-CGT--TTGCACCACATTC--TCATGCAA-CA-G-TAAA-AC-ATTAATTA-TT---C-AA--A-TAA-ACGATTGGAAAT-TAACAA-TG-T-T--TATTT-TTAATC-ATGT-AT-C-GA-TATG----G-TAAT--G-TTATACTAATA-GCTTG-ACAAACG-----AA-C-ATTTGA--T---ACAACCC-CAAAAAATCTAA-T-GCACCAG-CGTCCAAGTCA-CAG-CTCGAA---GTAT-G-G-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCC-CCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-CTA-ATA-TT--ATTGA-CCC--TG---CC---CTC--TCATGCAA-CATG-TTTG-AG-ATGA------------AATAA-TAA-A-GATTGGGAAT-TAA-A------------TTTGTTAATG-ATGT-AT-C-TA-TATG----G-TA-T--G-T-GTACAAATA-GCT-A-A-
gi|11 : AA-AA-TTGT-TG-TATTTGTTA-TC-ATGT-AT-T-TA-TATG----AATA-T--G-T-ATACAAATAAGGT---A-AAACG-----AA-C-TTTTTT--TAATACAAACC-AGAATA-GCTAA-TCGCAC-TG-GGTCCGAGTCA-GAATCTCGA
gi|12 : aCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : ----C-AATAG-TAA-A-GATTGGAAAT-TAA-AA-TG-G-TG-TAATTGTTAATC-ATAT-AT-C-GA-TATG----G-TA-T--G-T-ATACACATA-GCT-G-A-AAACG----------TTTTAAATT--TATGatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTC-CCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGG-ATAACGGAcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCAC-AG-CGTCCAAATCA-CAG-CCCGAA---G--T-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : C-AG-CGTCCAAGTCA-CAG-CTCGAA---G--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAG-TTA-AG--GTTGT-CGTGGTG---CC---CTCCATCATGC-AACA-GTTAAA-ACAATTATGTGTT----C-AATGA-tgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAG-AAA-AT--GCTAC-CA---CC---CC---CTC--TCATGC-AACA-G-TAAA-AC-TTTAGTTGTT----C-AATAA-CAa
gi|2 : TGAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGT--TC---CT---TTC--TCATGAAAACA-G-TAAA-AC-ATTATTTA-T----C-AATAA-TTA-A-AATTGGAAAT-TAA-A--TT-T-TG-TATTTGTTAATC-ATGT-AT-C-GA-TATG----G-TA-T--T-T-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTGG--T--TACTACCC-CAAAAA-TCTAA-TCGCAC-AG-CGTCCAAGTCACCAG-CCCAAA---G--T-C-G-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcaAT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG-TT---C-AATAA-TAA-A-GATTGGAAAT-TAG-AA-TG-T-TG-TATTTGTTAATC-AGAT-AT-C-GA-TATG----A-TA-ta
gi|22 : AAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTGC-CGT--TG---CC---TTC--T-ATGCAAACA-G-TAAAGAT-ATGATTAT-T----C--TTAA-TAA-A-A--TGGAAATGTAA-AA-TT-TCTGTTATTTGTT-GTC-ATGTCAT-CAGA-CTTG----G-TA-T--GTT-ATACAAATA-GCT-GTA-AAACG-----AA-C-TTTTGA--C--TA----CC-CAAAAA-TCTA---TGCAC-AG--GT--AAGTCA-CCG-CCCGAAG--G--T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CACCC--------CCCTT--AT---TTACAAAT---GAGGA-A---GATAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAG-TTACAT--GTTGC-CGC--TG---TC---C--------------------------------TA-T----C-AGTAA-TAA-A-GACTGGGAAT-TAA-AA-TG-T-TG-TATATGTTATTC-A--T-AT-C-CA-AAAG----A-TA----A-T-ATAC-------TT------------------T-TTTTTA--A--TACAACCCGCAAAAA-TATAATTCGCAC-TGAGGTCCGAATCA-GGG-CTCGAAAATA--C-G-G-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAG-TTA-CT--GTTGC-CGC--TG---TT---ATT--TCATGCAA-CA-G-TAAA--C-AGTATGTG-T----TGAATGA-TAG-A-TATTGGAAAT-TAA-AA-TTGT-TG-TATTTGTTAATC-ATGT-AT-C-TA-TATG----G-TA-TATG-T-ATACAAATC-GCT-A-A-AAACT-----AA-CATTTTGA-----TACGACCT-CAAAAT-TCTAT-TCGCAC-AG-
gi|7 : tgTAAA-ATAGGAGAGG-CAG-TTA-AT--GTTGC-CGC--TG---CA---CTC--TTATGTAA-CA-A-TACA-AC-TTTAGTTGTT----C-------TA---------------TAA-GA-TT-T-TG-TATCT----------------------ACG----G-TA-T--A-T-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTCGA--T--T-CGACCC-CGAAAA-TCTAA-CCGCAC-AA-AGTCCGAGT-A-CA--CTAGAA---A--T-
gi|8 : gTAAA-AT-GGAGAGG-CAG-TTA-AT--GCTGTTCGT--GC---CC---CT---TCATGCA--CA-G-TAAA-AC-AT-ATTTG-TGTTTC-AATAAATAACA-GATTGGAAAT-TAA-AAATTGT-TG-TAATTGT-AATCCATGT-ATTC-GAATATG----G-TA-C------ATACAAATA-GCT-G-A-AAACGTCTTAAA-A-TTTTGgtc
gi|9 : A-A-GAT-AGAAAT-TAA-A-----------------TAAAC-ATGT-AC-A-TG-TATGTTTTG-TA-T--G-T-ATATAGAAA-GCT-G-A-AAAAA-----AAAC-TTTTGA--T---ACGGCAC-AAAAAA-TCTAA-TCGCAC-AG-AGTCCAAGTAA-GTG-CTCGAA---G--T-T-G--GTG-TACGCTAGAAA--Tca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 111 1111 1111 11111111111 1111 1111111111 33333333333 111 33333333333 22222
lowQualScore : 4 4 4 4 55 4 666 4 4 8888 55 666 4 4 4 4 0 4 8888 6 3 3 3 3 3 3 3 3 3333 3 0 3 3 3 3 999 7777 3 8888 7 3 999 3 44444444444 1111 3 5 4 4 3 77 55 3 8888888888 4 1 6 66 1 1 88888888888 6 0 2 3 111 9 6 888 1 11 0 55555555555 00000 8 0 88 0
lowQualScore : . . . . .. . ... . . .... .. ... . . . . . . .... . . . . . . . . . .... . . . . . . ... .... . .... . . ... . ........... .... . . . . . .. .. . .......... . . . .. . . ........... . . . . ... . . ... . .. . ........... ..... . . .. .
lowQualScore : 0 0 0 0 55 0 999 0 0 5555 55 999 0 0 0 0 7 4 6666 7 3 3 6 6 6 3 3 2 3333 3 4 3 3 3 3 222 1111 3 2222 3 6 333 6 22222222222 9999 7 0 0 0 3 99 00 6 2222222222 4 9 7 11 0 0 00000000000 7 2 5 2 777 8 7 777 0 88 8 88888888888 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAGTT-A-ATATGTTG-CCGT--TTGCACCACATTC--TCATGCAA-CA-G-TAAA-AC-ATTAATTA----TTC-AA---ATAA-ACGATTGGAAAT-T-AACAATG-T-T-T-ATTT-TTAAT-CATGT-A-TC-G-ATATG----G-TAAT--GTTATACTAAT-AGCTTG-ACAAACG-----AA-C--ATTTGA--T-ACAACCC-CAAAAAATCTAA-T-GCACCAG-CGTCCAAGTCA-CAG-CTCGAA---GTAT-G-G-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCCCCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-CTAAT-A-TT--ATTG-ACCC--T-GC-CC----TC--TCATGCAA-CATG-TTTG-AG-ATGA------------AAT-AATAA-A-GATTGGGAAT-T-AA-A-----------TTTGTTAAT-GATGT-A-TC-T-ATATG----G-TA-T--GT-GTACAAAT-AGCT-A-A-
gi|11 : -AA-AATTGT-TGT-ATTTGTTA-T-CATGT-A-TT-T-ATATG----AATA-T--GT-ATACAAATAAGGT---A-AAACG-----AA-CTTTTTTTA--ATACAAACC-AGAATA-GCTAA-TCGCAC-TG-GGTCCGAGTCA-GAATCTCGA
gi|12 : aCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : -C-AAT-AGTAA-A-GATTGGAAAT-T-AA-AATG-G-TGT-AATTGTTAAT-CATAT-A-TC-G-ATATG----G-TA-T--GT-ATACACAT-AGCT-G-A-AAACG-----------TTTTAAATTTATGatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTCCCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGG-ATAACGGAcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCAC-AG-CGTCCAAATCA-CAG-CCCGAA---G--T-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : C-AG-CGTCCAAGTCA-CAG-CTCGAA---G--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAGTT-A-AG--GTTG-TCGTGGT-GC-CC----TCCATCATGC-AACA-GTTAAA-ACAATTATGTGT---T-C-AAT-GAtgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAGAA-A-AT--GCTA-CCAC--C--C-CC----TC--TCATGC-AACA-G-TAAA-AC-TTTAGTTGT---T-C-AAT-AACAa
gi|2 : TGAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGT--T-CC-TT----TC--TCATGAAAACA-G-TAAA-AC-ATTATTTA----T-C-AAT-AATTA-A-AATTGGAAAT-T-AA-A-TT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--TT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGG--TTACTACCC-CAAAAA-TCTAA-TCGCAC-AG-CGTCCAAGTCACCAG-CCCAAA---G--T-C-G-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCACCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatAT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG----TTC-AAT-AATAA-A-GATTGGAAAT-T-AG-AATG-T-TGT-ATTTGTTAAT-CAGAT-A-TC-G-ATATG----A-TA-ta
gi|22 : AAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTG-CCGT--T-GC-CT----TC--T-ATGCAAACA-G-TAAAGAT-ATGATTAT----T-C-T-T-AATAA-A-A--TGGAAATGT-AA-AATT-TCTGTTATTTGTTG-T-CATGTCA-TCAG-ACTTG----G-TA-T--GTTATACAAAT-AGCT-GTA-AAACG-----AA-C--TTTTGA--CTAC----C-CAAAAA-TCTA---TGCAC-AG--GT--AAGTCA-CCG-CCCGAA---GG-T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CA-------CCCCCCTT--AT---TTACAAAT---GAGGA-A---GATAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAGTT-ACAT--GTTG-CCGC--T-GT-CC------------------------------------TA----T-C-AGT-AATAA-A-GACTGGGAAT-T-AA-AATG-T-TGT-ATATGTTATT-CA--T-A-TC-C-AAAAG----A-TA----AT-ATAC-------TT------------------T--TTTTTA--ATACAACCCGCAAAAA-TATAATTCGCAC-TGAGGTCCGAATCA-GGG-CTCGAAAATA--C-G-G-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAGTT-A-CT--GTTG-CCGC--T-GT-TA----TT--TCATGCAA-CA-G-TAAA--C-AGTATGTG----T-TGAAT-GATAG-A-TATTGGAAAT-T-AA-AATTGT-TGT-ATTTGTTAAT-CATGT-A-TC-T-ATATG----G-TA-TATGT-ATACAAAT-CGCT-A-A-AAACT-----AA-CA-TTTTGA---TACGACCT-CAAAAT-TCTAT-TCGCAC-AG-
gi|7 : tgTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-AC----TC--TTATGTAA-CA-A-TACA-AC-TTTAGTTGT---T-C-------TA---------------T-AA-GATT-T-TGT-ATCT----------------------ACG----G-TA-T--AT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTCGA--TT-CGACCC-CGAAAA-TCTAA-CCGCAC-AA-AGTCCGAGT-A-CA--CTAGAA---A--T-
gi|8 : gTAAA-AT-GGAGAGG-CAGTT-A-AT--GCTGTTCG---T-GC-CC----CT--TCATGC--ACA-G-TAAA-AC-A-TATTTGTGTTT-C-AATAAATAACA-GATTGGAAAT-TAAA-AATTGT-TGT-AATTG-TAATCCATGT-ATTC-GAATATG----G-TA-----C-ATACAAAT-AGCT-G-A-AAACGTCTTAAA-A--TTTTGgtc
gi|9 : A-A-GAT-AGAAAT-T-AA-A----------------TAAA-CATGT-A-CA-T-GTATGTTTTG-TA-T--GT-ATATAGAA-AGCT-G-A-AAAAA-----AAAC--TTTTGA--T-ACGGCAC-AAAAAA-TCTAA-TCGCAC-AG-AGTCCAAGTAA-GTG-CTCGAA---G--T-T-G--GTG-TACGCTAGAAA--Tca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 111 1111 1111 11111111111 1111 1111111111 33333333333 111 33333333333 22222
lowQualScore : 4 4 4 4 55 4 666 4 4 8888 55 666 4 4 4 4 0 4 8888 6 3 3 3 3 3 3 3 3 3333 3 0 3 3 3 3 999 7777 3 8888 7 3 999 3 44444444444 1111 3 5 4 4 3 77 55 3 8888888888 4 1 6 66 1 1 88888888888 6 0 2 3 111 9 6 888 1 11 0 55555555555 00000 8 0 88 0
lowQualScore : . . . . .. . ... . . .... .. ... . . . . . . .... . . . . . . . . . .... . . . . . . ... .... . .... . . ... . ........... .... . . . . . .. .. . .......... . . . .. . . ........... . . . . ... . . ... . .. . ........... ..... . . .. .
lowQualScore : 0 0 0 0 55 0 999 0 0 5555 55 999 0 0 0 0 7 4 6666 7 3 3 6 6 6 3 3 2 3333 3 4 3 3 3 3 222 1111 3 2222 3 6 333 6 22222222222 9999 7 0 0 0 3 99 00 6 2222222222 4 9 7 11 0 0 00000000000 7 2 5 2 777 8 7 777 0 88 8 88888888888 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAGTT-A-ATATGTTG-CCGT--TTGCACCACATTC--TCATGCAA-CA-G-TAAA-AC-ATTAATTA----TTC-AA---ATAA-ACGATTGGAAAT-T-AACAATG-T-T-T-ATTT-TTAAT-CATGT-A-TC-G-ATATG----G-TAAT--GTTATACTAAT-AGCTTG-ACAAACG-----AA-C--ATTTGA--T-ACAACCC-CAAAAAATCTAA-T-GCACCAG-CGTCCAAGTCA-CAG-CTCGAA---GTAT-G-G-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCCCCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGATTAA-GGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-CTAAT-A-TT--ATTG-ACCC--T-GC-CC----TC--TCATGCAA-CATG-TTTG-AG-ATGA------------AAT-AATAA-A-GATTGGGAAT-T-AA-A-----------TTTGTTAAT-GATGT-A-TC-T-ATATG----G-TA-T--GT-GTACAAAT-AGCT-A-A-
gi|11 : -AA-AATTGT-TGT-ATTTGTTA-T-CATGT-A-TT-T-ATATG----AATA-T--GT-ATACAAATAAGGT---A-AAACG-----AA-CTTTTTTTA--ATACAAACC-AGAATA-GCTAA-TCGCAC-TG-GGTCCGAGTCA-GAATCTCGA
gi|12 : aCTCCAAC---TTAGGAATGTGATGGA-AAAGAA-AACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : -C-AAT-AGTAA-A-GATTGGAAAT-T-AA-AATG-G-TGT-AATTGTTAAT-CATAT-A-TC-G-ATATG----G-TA-T--GT-ATACACAT-AGCT-G-A-AAACG-----------TTTTAAATTTATGatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTCCCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGG-ATAACGGAcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCAC-AG-CGTCCAAATCA-CAG-CCCGAA---G--T-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : C-AG-CGTCCAAGTCA-CAG-CTCGAA---G--T-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAGTT-A-AG--GTTG-TCGTGGT-GC-CC----TCCATCATGC-AACA-GTTAAA-ACAATTATGTGT---T-C-AAT-GAtgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAGAA-A-AT--GCTA-CCAC--C--C-CC----TC--TCATGC-AACA-G-TAAA-AC-TTTAGTTGT---T-C-AAT-AACAa
gi|2 : TGAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGT--T-CC-TT----TC--TCATGAAAACA-G-TAAA-AC-ATTATTTA----T-C-AAT-AATTA-A-AATTGGAAAT-T-AA-A-TT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--TT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGG--TTACTACCC-CAAAAA-TCTAA-TCGCAC-AG-CGTCCAAGTCACCAG-CCCAAA---G--T-C-G-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCACCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatAT---TTAGAAATATGAAGGG-AAGGAA-AACGGAATCTTTT-----------CTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG----TTC-AAT-AATAA-A-GATTGGAAAT-T-AG-AATG-T-TGT-ATTTGTTAAT-CAGAT-A-TC-G-ATATG----A-TA-ta
gi|22 : AAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTGGA---G--TCC-G-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTG-CCGT--T-GC-CT----TC--T-ATGCAAACA-G-TAAAGAT-ATGATTAT----T-C-T-T-AATAA-A-A--TGGAAATGT-AA-AATT-TCTGTTATTTGTTG-T-CATGTCA-TCAG-ACTTG----G-TA-T--GTTATACAAAT-AGCT-GTA-AAACG-----AA-C--TTTTGA--CTAC----C-CAAAAA-TCTA---TGCAC-AG--GT--AAGTCA-CCG-CCCGAA---GG-T-C-GATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CA-------CCCCCCTT--AT---TTACAAAT---GAGGA-A---GATAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAGTT-ACAT--GTTG-CCGC--T-GT-CC------------------------------------TA----T-C-AGT-AATAA-A-GACTGGGAAT-T-AA-AATG-T-TGT-ATATGTTATT-CA--T-A-TC-C-AAAAG----A-TA----AT-ATAC-------TT------------------T--TTTTTA--ATACAACCCGCAAAAA-TATAATTCGCAC-TGAGGTCCGAATCA-GGG-CTCGAAAATA--C-G-G-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAGTT-A-CT--GTTG-CCGC--T-GT-TA----TT--TCATGCAA-CA-G-TAAA--C-AGTATGTG----T-TGAAT-GATAG-A-TATTGGAAAT-T-AA-AATTGT-TGT-ATTTGTTAAT-CATGT-A-TC-T-ATATG----G-TA-TATGT-ATACAAAT-CGCT-A-A-AAACT-----AA-CA-TTTTGA---TACGACCT-CAAAAT-TCTAT-TCGCAC-AG-
gi|7 : tgTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-AC----TC--TTATGTAA-CA-A-TACA-AC-TTTAGTTGT---T-C-------TA---------------T-AA-GATT-T-TGT-ATCT----------------------ACG----G-TA-T--AT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTCGA--TT-CGACCC-CGAAAA-TCTAA-CCGCAC-AA-AGTCCGAGT-A-CA--CTAGAA---A--T-
gi|8 : gTAAA-AT-GGAGAGG-CAGTT-A-AT--GCTGTTCG---T-GC-CC----CT--TCATGC--ACA-G-TAAA-AC-A-TATTTGTGTTT-C-AATAAATAACA-GATTGGAAAT-TAAA-AATTGT-TGT-AATTG-TAATCCATGT-ATTC-GAATATG----G-TA-----C-ATACAAAT-AGCT-G-A-AAACGTCTTAAA-A--TTTTGgtc
gi|9 : A-A-GAT-AGAAAT-T-AA-A----------------TAAA-CATGT-A-CA-T-GTATGTTTTG-TA-T--GT-ATATAGAA-AGCT-G-A-AAAAA-----AAAC--TTTTGA--T-ACGGCAC-AAAAAA-TCTAA-TCGCAC-AG-AGTCCAAGTAA-GTG-CTCGAA---G--T-T-G--GTG-TACGCTAGAAA--Tca
blockSeqs : T G T C . T TGG . . . CA AAA T T G A T TGTT T G A C . G A . A TGT T A C C T AG TTTT A TAT T A GT . TCTTAAAA ATTT A G . T . AG CC T AATACG A T C AT G T ATATCACCGT C C C GAT G . ATT C AA GAGTGCCTTGT . G T
blockSeqs : . . . . . . C . . . . AAA . . . . G T . . . . . . . . A TTC . A . . . GA . . T . . A . AACTT AT G . . . . G G . GTCG . T C . . C C . A . GAT C AA T . . T
blockSeqs : . . . . . . C . . . . AA . . . . T T . . . . . . . . A TGT . A . . . T . . T . . G . AACA TT T . . . . C C . GTTG . T C . . C . A . AA C AT T . . T
blockSeqs : . . . . . . T . . . . AA . . . . T T . . . . . . . . A TGT . A . . . T . . T . . G . AAAC CT A . . . . C C . GTCC . T C . . . . . AT C . . . . .
blockSeqs : . . . . . . T . . . . AA . . . . T . . . . . . . . . A GG . T . . . G . . T . . A . AAC AT G . . . . C G . GTCC . T . . . . . AA T
blockSeqs : . . . . . . C . . . . AA . . . . T . . . . . . . . . A TT . A . . . G . . T . . G . AAC TT G . . . . A G . GGTC . T . .
blockSeqs : . . . . . . C . . . . AA . . . . G . . . . . . . . . A GT . A . . . G . . T . . G . AAC T G . . . . A C . GTC . . . .
blockSeqs : . . . . . . C . . . . A . . . . T . . . . . . . . . A GT . A . . . C . . T . . G . T T . . . . A G . GTT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . . T . . . . . . . . . . . A C .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : ** **** T*** G** NT** GTCC****** AA* ***** T*
originalCons : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAAT-AGCT-G-A-AAACG-----AA-C--TTTTGA--TTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAA---G--T-C-G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAATAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
finalCons : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TAT---GT-ATACAAAT-AGCTG--A-AAACG-----AA-C--TTTTGANT--ACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCGAAGTCC------G-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGAA-AACGGAAACTTTT----------TCTGTTT-----GT-CGGCAAT-TTTAGAAGACGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT
Alignments
lowQualScore : 111 1111 1111 11111 1 111 111 33333333333 111 11 1 3333333333 22222
lowQualScore : 4 4 4 4 55 4 666 4 4 8888 55 666 4 4 4 4 0 4 8888 6 3 3 3 3 3 3 3 3 3333 3 0 3 3 3 3 999 7777 3 8888 7 3 999 3 00000 444 55 4 5 5 4 4 3 77 55 3 3 444 4 000 66 1 1 88888888888 6 333 3 111 9 6 55 11 0 5555555555 00000 8 0 88 0
lowQualScore : . . . . .. . ... . . .... .. ... . . . . . . .... . . . . . . . . . .... . . . . . . ... .... . .... . . ... . ..... ... .. . . . . . . .. .. . . ... . ... .. . . ........... . ... . ... . . .. .. . .......... ..... . . .. .
lowQualScore : 0 0 0 0 55 0 999 0 0 5555 55 999 0 0 0 0 7 4 6666 7 3 3 6 6 6 3 3 2 3333 3 4 3 3 3 3 222 1111 3 2222 3 6 333 6 00000 666 55 0 4 0 0 0 3 99 00 6 6 666 4 222 11 0 0 00000000000 5 000 2 777 8 7 00 88 6 0000000000 00000 0 8 88 8
consensus : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTG--A-TACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCG-AAGT-CGG-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGA-TAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
Reference ( family-697 ) : NTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-CC----TC--TCATGCAAACA-G-TAAA-AC-ATTATTTG----T-C-AAT-AATAA-A-GATTGGAAAT-T-AA-AATT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--GT-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTG--ANTACGACCC-CAAAAA-TCTAA-TCGCAC-AG-NGTCCGAGTCA-CAG-CTCG-AAGT-CCG-TGTACTACGCTAGAAA--TGTCTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAGNGGNCATACNACCGTACACCCCCCCCCCCCCTTCAAT---TTAGAAATATGAAGGA-AAGGA-AAACGGAAACTTTT----------TCTGTTT-----GT-CGGCAA-TTTTAGAAGACGGG
gi|1 : AA-ATAGGA-AGG-CAGTT-A-ATATGTTG-CCGT--TTGCACCACATTC--TCATGCAA-CA-G-TAAA-AC-ATTAATTA----TTC-AA---ATAA-ACGATTGGAAAT-T-AACAATG-T-T-T-ATTT-TTAAT-CATGT-A-TC-G-ATATG----G-TAAT--GTTATACTAATA-GCTTG-ACAAACG-----AA-C-ATTTG--A-TACAACCC-CAAAAAATCTAA-T-GCACCAG-CGTCCAAGTCA-CAG-CTCG-AAGTATGG-TGTACTACATTAGAAA--TGTCTAATA
gi|1 : atgttCCCCCTTCCCTTTAAT---TTAGAAATATGAAGGATAAGGA-TTAAGGAAAC-TTT----------TCTGTTTTGCCGGT-CGGCAATTTTTAGAAtgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacacccccttccctttaatttagaaatatgaaggataaggattaaggaaacttttctgttttgccggtcggcaatttttagaa
gi|10 : atgttaaataggaaggcagttaatatgttgccgtttgcaccacattctcatgcaacagtaaaacattaattattcaaataaacgattggaaattaacaatgtttatttttaatcatgtatcgatatggtaatgttatactaatagcttgacaaacgaacatttgatacaaccccaaaaaatctaatgcaccagcgtccaagtcacagctcgaagtatggtgtactacattagaaatgtctaatatgccaaacgttcatgtacaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttaacaA-ATAATAGAGG-CTAAT-A-TT--ATTG-ACCC--T-GC-CC----TC--TCATGCAA-CATG-TTTG-AG-ATGA------------AAT-AATAA-A-GATTGGGAAT-T-AA-A-----------TTTGTTAAT-GATGT-A-TC-T-ATATG----G-TA-T--GT-GTACAAATA-GCT-A-A-
gi|11 : -AA-AATTGT-TGT-ATTTGTTA-T-CATGT-A-TT-T-ATATG----AATA-T--GT-ATACAAATAAGGT---A-AAACG-----AA-C-TTTTTTTAATACAAACC-AGAATA-GCTAA-TCGCAC-TG-GGTCCGAGTCA-GAATCTCG-A
gi|12 : aCTCCAAC---TTAGGAATGTGATGGA-AAAGA-AAACAGAAATTTTTGAGTGCCTTGTCTGTTT-----GT-CAACAA-TTTTAGAAGACG
gi|13 : -C-AAT-AGTAA-A-GATTGGAAAT-T-AA-AATG-G-TGT-AATTGTTAAT-CATAT-A-TC-G-ATATG----G-TA-T--GT-ATACACATA-GCT-G-A-AAACG----------TTTTA--AATatttctccttcgactgtctcaacacat
gi|14 : ACAAACGGGC---CAA---TACACCCTCCCCCC---TTCAATGATTTAGAAATATGAAGAA-AAGGA-TAACGGAttatgcaggtatataa
gi|15 : tgatttaatgaaaaacagccgtgaatgaacaggattgttaCAC-AG-CGTCCAAATCA-CAG-CCCG-AAGT-CGG-TGTACTACGTTACAAA--TGTCTGATA
gi|16 : C-AG-CGTCCAAGTCA-CAG-CTCG-AAGT-TGG-TATACTATATTAGAAA--TGCCTAATAtgccaacgttcatgtatattgcacgttaattgttgcttgaatatta
gi|17 : AA-GTAGG-GAGG-CAGTT-A-AG--GTTG-TCGTGGT-GC-CC----TCCATCATGC-AACA-GTTAAA-ACAATTATGTGT---T-C-AAT-GAtgccaacgttcatgtacaaggcatt
gi|19 : AA-ATAGGAGATG-CAGAA-A-AT--GCTA-CCAC--C--C-CC----TC--TCATGC-AACA-G-TAAA-AC-TTTAGTTGT---T-C-AAT-AACAa
gi|2 : TGAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGT--T-CC-TT----TC--TCATGAAAACA-G-TAAA-AC-ATTATTTA----T-C-AAT-AATTA-A-AATTGGAAAT-T-AA-A-TT-T-TGT-ATTTGTTAAT-CATGT-A-TC-G-ATATG----G-TA-T--TT-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTTG--GTTACTACCC-CAAAAA-TCTAA-TCGCAC-AG-CGTCCAAGTCACCAG-CCCA-AAGT--CG-TGTACTACGTTTGAAAATTGTCTAATA
gi|2 : aCACCCCCCCCCCCCCTTCAAT---TTAGAAAT-TAATAGA-AAGGATTAACGGAAACTTTT----------TCTGTTT-----GT-TGGCAA--TTTAGAAGACGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatcacccccccccccccttcaatttagaaattaatagaaaggattaacggaaactttttctgtttgttggcaatttagaagacgag
gi|20 : atgaaataggagaggcagttaatgttgccgttcctttctcatgaaaacagtaaaacattatttatcaataattaaaattggaaattaaattttgtatttgttaatcatgtatcgatatggtatttatacaaatagctgaaaacgaacttttggttactaccccaaaaatctaatcgcacagcgtccaagtcaccagcccaaagtcgtgtactacgtttgaaaattgtctaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaaacggtctcatAT---TTAGAAATATGAAGGG-AAGGA-AAACGGAATC-TTT----------TCTGTTT-----GT-CGACAA-TTTTAGAAGACG
gi|21 : TTTG----TTC-AAT-AATAA-A-GATTGGAAAT-T-AG-AATG-T-TGT-ATTTGTTAAT-CAGAT-A-TC-G-ATATG----A-TA-ta
gi|22 : AAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTG-GAGT-CCG-TG---TACGCTAGAAA--TGTC
gi|23 : gAAAA-TCTAA-TCACAC-AA-AGTCCGAGTCA-GAG-CTTG-GAGT-CCG-TG---TACGCTAGAAA--TGTC
gi|3 : gTAAATATAGGAGAGG-CAGTTTA-AT--GTTG-CCGT--T-GC-CT----TC--T-ATGCAAACA-G-TAAAGAT-ATGATTAT----T-C-T-T-AATAA-A-A--TGGAAATGT-AA-AATT-TCTGTTATTTGTTG-T-CATGTCA-TCAG-ACTTG----G-TA-T--GTTATACAAATA-GCT-GTA-AAACG-----AA-C-TTTTG--ACTAC----C-CAAAAA-TCTA---TGCAC-AG--GT--AAGTCA-CCG-CCCG-AAGG-TCGATGTACTACGTTAGAAA--TGTTTA
gi|4 : tgTACAAGGGGTCATATCACCGT-CACCC-------CCCTT--AT---TTACAAAT---GAGGA-A--GA-TAATGGA---TTTT----------TTTGTTT-----GCGCGGC-A-TTTC--AAGACGGGtgcacaacgttcatataaatttcacgttaataaaatgttgcttgatattag
gi|5 : ttttcacatcataatttaagatatattgggccccccccacccccgctatgccccttttttggtgatcttaatcggaatatacagccgtcaatgaacaggttcaatgagTAAA-ATAGTAGAGGGCAGTT-ACAT--GTTG-CCGC--T-GT-CC------------------------------------TA----T-C-AGT-AATAA-A-GACTGGGAAT-T-AA-AATG-T-TGT-ATATGTTATT-CA--T-A-TC-C-AAAAG----A-TA----AT-ATAC-------TT------------------T-TTTTT--AATACAACCCGCAAAAA-TATAATTCGCAC-TGAGGTCCGAATCA-GGG-CTCGAAAATACGG-TGTA-TATACAAGAAA---GTCtt
gi|6 : tgTAAA-ATAGCACAGG-CAGTT-A-CT--GTTG-CCGC--T-GT-TA----TT--TCATGCAA-CA-G-TAAA--C-AGTATGTG----T-TGAAT-GATAG-A-TATTGGAAAT-T-AA-AATTGT-TGT-ATTTGTTAAT-CATGT-A-TC-T-ATATG----G-TA-TATGT-ATACAAATC-GCT-A-A-AAACT-----AA-CATTTTG--A-TACGACCT-CAAAAT-TCTAT-TCGCAC-AG-
gi|7 : tgTAAA-ATAGGAGAGG-CAGTT-A-AT--GTTG-CCGC--T-GC-AC----TC--TTATGTAA-CA-A-TACA-AC-TTTAGTTGT---T-C-------TA---------------T-AA-GATT-T-TGT-ATCT----------------------ACG----G-TA-T--AT-ATACAAATA-GCT-G-A-AAACG-----AA-C-TTTCG--ATT-CGACCC-CGAAAA-TCTAA-CCGCAC-AA-AGTCCGAGT-A-CA--CTAG-AAAT-
gi|8 : gTAAA-AT-GGAGAGG-CAGTT-A-AT--GCTGTTCG---T-GC-CC----CT--TCATGC--ACA-G-TAAA-AC-A-TATTTGTGTTT-C-AATAAATAACA-GATTGGAAAT-TAAA-AATTGT-TGT-AATTG-TAATCCATGT-ATTC-GAATATG----G-TA-----C-ATACAAATA-GCT-G-A-AAACGTCTTAAA-A-TTTTG--gtc
gi|9 : A-A-GAT-AGAAAT-T-AA-A----------------TAAA-CATGT-A-CA-T-GTATGTTTTG-TA-T--GT-ATATAGAAA-GCT-G-A-AAAAA-----AAAC-TTTTG--A-TACGGCAC-AAAAAA-TCTAA-TCGCAC-AG-AGTCCAAGTAA-GTG-CTCG-AAGT-TGG-TG---TACGCTAGAAA--Tca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTAACATCATTTTAGATATGTTTGTGCCCCCCCCCCCCCCCCCACACACACTTTCTGGTGAATTTTAAACG
Unaligned ( gi|24 ): AGAAATGTCTAATATGCCAAAGTTCATGTAAATTTCACGCTAATTGTTTTAAAATAT