lowQualScore : 55555555555555555555555555555555 1 222 111 11 2222 11 11111111 111 111 333 222 11 22 11 11 1111 1 44444 1 1 11111 444444444 1111 1111 11111 1 2222 3333333 1111 44444444
lowQualScore : 4 8888 5 00000000000000000000000000000000 6 1 2 0 1 111 111 1 6 00 5 5555 11 88888888 6 777 2 888 111 888 8 2 66 55 3 33 7 33 4444 0 77777 0 2 6 0 99999 6 000000000 6 6 4444 6 6 6 5 7777 5 4 44444 77 0 5 5555 4 6666666 1 3333 88888888 2 6
lowQualScore : . .... . ................................ . . . . . ... ... . . .. . .... .. ........ . ... . ... ... ... . . .. .. . .. . .. .... . ..... . . . . ..... . ......... . . .... . . . . .... . . ..... .. . . .... . ....... . .... ........ . .
lowQualScore : 0 1111 7 66666666666666666666666666666666 7 7 1 7 3 666 777 7 7 33 0 0000 00 66666666 0 555 2 000 000 000 8 5 00 22 0 88 0 88 8888 5 00000 0 5 0 8 88888 7 888888888 7 7 8888 7 7 7 4 9999 7 3 33333 99 9 7 3333 6 9999999 7 3333 33333333 5 7
consensus : ACNTCAAT-C--AAATCACTCACAATC-G----------N----ANT-CNATT--------TCGTC-CGGCCCGGAAGNGCAGGAAAGA--CAACCCAAA---CTAATAT-TCCGAATA-NCATTAAGCATACGA----TGACA--CCGGAAGCTT----CCG-AGAAGA---AATTCGAA-TTTGCTTATGTT--ACTCAACTTACTGA-CGATA-AAGATTNAT--CGCGCA--AGCAAGG--TTTAATT---CTAA-ATNCATGATTAAAAACTGAA-NT--G-ATAGAA-ACAA---GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTCCGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-ACGATTTT-T---TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
Reference ( gi|5 ) : ACTTCAAT-C--AAATCACTCACAATC-G----------C----ATT-CTATT--------TCATC-CAGCCCGGAAAAGCAGGAAAGA--GAACCCAAA---CTAATAT-TCCGAATA-ACATTAAGCCTACGA----TGACA--CCAGAAGCTT----CTG-AGGAGA---AATTTGAA-TATGC-T-TGTT--TCTCAACTTACTGG-CGATATAAGATTTAT--CGTGCA--AGCAAGA--TTAAATT---A-AA-ATGCATTATTAAAAACTGAA-GT--G-ATAGAA-AGAA---AT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTCCAAT----TG-TATAGCTGTTTT-----ATA--TCGAAC-CAC-TCAATTTTAT---TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
gi|20 : ACTTCAAT-C--AAATCACTCACAATC-A----------T----AAT-CTATT--------TCATC-CAGCCTGG-AAAGCAGGAAAGA--CAACCCAA
gi|11 : ACATCGAC-C--GAATTACTCACAATCGG----------CGTCAATT-TCGTTGCTGCGCATCAGC-TGGCCCGGAAGTGCAGGGGCGA--TAACCCAAA---CTAATGT-TTCGAATA-CTATTACGCACAGGA----TGACG--ATGGAATCTA----CCG-AG
gi|14 : ttACATCAAT-C--AAATCACTCACAACT-GAGGACAATTTC----GTTGCTGTTCA------TCAGC-TGGCCCGGAAGTGCAGGTACTA--TAACCCAAA---CTAACAA-TCCGAATG-A
gi|22 : aattACATCAAT-C--AAATCACTCACAACT-G----------G----AGT-CAATT--------TCGTatacatgggatgaccgaa
gi|4 : aattCTTCAATTC--AAATCGCTCACAATC-G----------T----AAT-CTATT--------TCGTC-CAGCACGGTAAAGCAGGAAAGA--CAACCCAAA---CTGATAT-TCCGAATA-ACATTAAGCATACGA----TGACA--CCTGAAGCTT----CCG-AGAAGA---AATTCGAA-TTTGC-TATGTT--ACTAAACTTACTGA-TGATA-AAGATTGAT--CGTGCA--AGCAAGG--TTTAATT---CTAA-ATTCATAATTAAAAACTGAA-TTG-G-ATAGAA-ACAAGT-GT-CT-GGAATTGG-TTTTC-GGTAC-ATTTGGTCCGATC---TG-TATAGCTGTTTT------TA--TCGGAC-CGCAACGATTTT-T---CTAACCGGGAACCTT--------GTCCGATCAACCTC-GCAAACtgctg
gi|3 : TTCAAT-TCAAAATCACTCACAATC-G---------------ATT-C-ATT--------TCGTC-CAGCCCAG-AAAGCA-GAAAGA--CAACCCAAA---CTAA-AT-TTCGAATA-TCATTAAGCCCTCGAT---TGACA--CCAGAAGCTT----CAGAAGAAGA---AATTCGAA-TTTGCTT-TGTTAACTTCAATTTACTGATTGATAT----TTTATTCCG-GCA--AGCAAGAGTTTAATTC---T-AA-ATGCATGATTAAAAACTGAA-AT--GTATAGTA-AT-A---AT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTCCGAT----TG-TATAGCTGTTTC-----ATA--TCAGAC-CGC-ACCATT---T---TTTACCGGA---CTT--------GTCCGACGAACTTTGGCGAACa
gi|15 : tttcacttttctgtctctgttgcacttttaaaaactggcaaatatttacggctctAAT-T--ACATCAATCATA----G----------A----AGT-CATTT--------TCATTGCGACCCGGAAGTACAGGAACGA--TAACCCAGA---CT
gi|6 : tttttacttttgtgtttccgttgtatttttaagactcgataatatttacatgtAAGCACGAAAGATTATACCCAAAAAACTGATATATCCGAATATAGATAAAGCATACGAGATTTGACATCCCAGAATCTTAATCCAG-AGAAAAGATAATTTCCACTTTGC-TATGTT--ACT-AACTTA-TGA-CGATAAAAGATTGAT--CGTGTATAAGCAA-A--TTTAATTTCTA-AATATTCATAATCAAAAACTAAATGTCCG-ATAGAA-GGAACAAGT-CT-GGAATT-GCTTCCC-GG-ACTATGTTGTTCAACATAGTGCTTTAGCT-TTTG-----ATAATTCG-AC-CGTATCGATTTTTTTTCTTTACCGA------T--------GTC--AC-AACCTTTGCAAACta
gi|8 : TAT-TCCGAATA-TCATTAAGCCTACGA----TGACA--CCAGAAGCTT----CCA-AGAAGA---AATTCGAA-TTTGCTT-TATT--ACTCTGCTTACTGA-CGATA-AAGATTTAT--GCCGCA--AGCAAGG--TCTAATT---CTAA-ATGCATGATT-AAAATTGAA-AT--G-ATAGAA-ACTA---CTACT-GGAACT-G---TTCGGG-AC-ATTTGGTCTTAT----TG-TATAGCTGTTTT-----ATA--CCAGAC-CGC-ACTATT---T---TTTACCGGA---CTTGTCCAACGGTCCGACGAACCTTGGCGAACactg
gi|1 : ATCAAAAAC-GAA-TT--G-ATAGAACAG------T-CTCGGAATT---TTTCC-GG-AC-ATTTGGTCCGAT----TG-TATAGCT-TTTTACAAAATA--TCGGACGCGT-ACGATTTT-T---TTTATCa
gi|13 : catttttatctgcttttttttgttcatttctttaaaaactcgcaaaattttgactataaacaatcttctaacatcagaagagtcgcacatcaccggatcataactattatgtcgtttcagtcagaaagaaacaggaacgacaccacaactgaatcaattctgatctattttaagtaataacgaatgcaaccaaaatcagacaaaagcaaatccttgagaaagaaaaatttatcagaaattaattgcaattaaaatatgttaaatacttaaacgtactcgaatgtattcatataacatgataagatatgatggtctgtgccggcataaacaaatgatattttgatccttctaaatcaAAACTGAG-AT--G-ATAGAA-ACAA---GT-CT-GGAACT-G-GTTTC-GG-AC-ATTTGGTCCGAC----TG-CATAGCTGTTGT-----ATA--TCGGAC-CGC-ACAATTTT-T---TT--CCGGA---CTT--------TTCCGACGAACCTTTGCAAACaagtacc
gi|16 : TTTGGTCCGAT----TG-TATAGCTGTTTT-----ATA--TCAGAC-AGC-ACAATTT--T---TTTACCAGA---CTTGTCCGAAGGTCCGACGAATCTTGGCGAACact
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AGTGTTCACCAAAGTCCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATTAAATCTGTTGTGAATATTTATTTATTTTTGTTGTTGTAAATATGCATTGAAAAACGACCTGTCTCTGTCATATTTCAATAAAACATTGCATATGCGTTAAATCATAATAATAGCCAGTCGAGGAAACCTGTGGGTTCCGACGATGACTAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCA
Unaligned ( gi|7 ): TCAAACCAAATGTTATGAATATTTATATTTTTGGTGTTGTAAATATCCATTGAAAAATGGCCTGTCATGTTTCAATAAAATATTGCATTATCTGTTAAGTAATAAGCTAATCTGAAGTATTAAAGAGAGAAAAGTGTGGGTTCTGACGATGACTGAAAGAATTCACATCTGCTTCATTTCTCAGGTTCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCAAATATTTGAT
Unaligned ( gi|9 ): AGTGTTCACAAAGGTCCTCAGAACTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGATTGAATGTGTTATGAATATTTCTTTATTTTTGTGTTGTAAATGTGCATTGAAAGCGACCTGTCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTAAATCTTAATTAATA
Unaligned ( gi|10 ): ATTTATTTTTGTTGTAAATATGCATTGAAAAACGACCTGCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTTAAATCATAAGTAATAGCCAGTCTGCAGCTAGTACAAAGAAAAGAAAACCTGTGGGTTCCGACGATGTCTAA
Unaligned ( gi|12 ): TAATGAGCCAGTCTGCAGTACAAAGGAGAGAAAACCTGTGGGTCGGACGATGCTTAAGAATTCACGCTGCTTCACCTACAGTTCAAAACGTTTTACTCAAAGCAATGAAGTCAAAAATCGAACAATTTTT
Unaligned ( gi|17 ): CGGACATTTGGTCCGTCACGATTCTAACTTTTACCGGACCGAGGCTATTTTTACCGACGAACCTTCGGAAACACTGTA
Unaligned ( gi|18 ): TAATAAATCAAGTCAATTCACTCAAAACCAGAGTCAATTTGTTGCTGTGCATTAGTGGCCGGAACCTATGCAAGGACT
Unaligned ( gi|19 ): ACATAAATCAATTACTCACAGCTGGAACAATTTTGTTCCCAGTGCATCAACTGGTCGTGGAAGTGCAGGG
Unaligned ( gi|21 ): TTTTTTTTTCGAATATATGCTTTGAAAAAAGCGCAACCTGTCTCTGTCATGTTTCTGAAATAAA
Alignments
lowQualScore : 5555555555555 111 1111 111 1111 222 11 1111 11 11 11 111 1111 111 111 1111 11111 1111 111111 1111 33333333
lowQualScore : 1 5 66 5 1 5 5555555555555 5 99 66 5 000 0 5 999 1 1 2222 5 99 4 111 6 6 7777 666 11 5 8 3333 1 11 9 11 11 6 666 3 1111 5 5 000 000 5 5 0000 5 5 5 11111 3333 4 2 333333 66 0 4 4 4 0 9 4 9999 0000 66666666 5
lowQualScore : . . .. . . . ............. . .. .. . ... . . ... . . .... . .. . ... . . .... ... .. . . .... . .. . .. .. . ... . .... . . ... ... . . .... . . . ..... .... . . ...... .. . . . . . . . .... .... ........ .
lowQualScore : 0 0 99 9 0 9 0000000000000 7 99 11 0 000 1 7 777 7 3 1111 7 22 8 777 7 7 0000 888 00 0 0 0000 0 00 6 00 22 7 777 7 0000 7 7 000 999 7 7 0000 0 0 0 11111 9999 4 9 000000 11 9 4 4 4 9 0 4 4444 8888 22222222 6
consensus : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
Reference ( family-6934 ) : ACNTCAAT-C--AAATCACTCACAATCGNANTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCGGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTNAT--CGCGCA--AGCAAG-GTTTAATT-CTAAATN--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
gi|1 : TT-CTAAAT---CA--ATCAAAAAC-GAAT---T-G-ATAGAA----CA---GT-CTCGGAATT---TTTCC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCT-TTTTACAAAATA--TCGGACGCGT-A-CGATTTT-T----TTTATC
gi|11 : catttttatctgcttttttttgttcatttctttaaaaactcgcaaaattttgactataaacaatcttctaacatcagaagagtcgcacatcaccggatcataactattatgtcgtttcagtcagaaagaaacaggaacgacaccacaactgaatcaattctgatctattttaagtaataacgaatgcaaccaaaatcagacaaaagcaaatccttgagaaagaaaaatttatcagaaattaattgcaattaaaatatgttaaatacttaaacgtactcgaatgtattcatataacatgataagatatgatggtctgtgccggcataaacaaatgatattttgatccACATCGAC-C--GAATTACTCACAATCGGCGTCAATTTCGTTGCTGCGCATCAGC-TGGCCCGGAAGTGCAGGGGCGAT-A-ACCCAAA---CTAATGT-TTCGAATACT-ATTACGCACAGGA----T-GACG--ATGGAATCTA---CC-GA-Gaagtacc
gi|13 : ttAAACTGAGA---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-GTTTC-GG-AC-ATTTGGTC-----CGAC----TG-CATAGCTGTTGT-----ATA--TCGGAC-CGC-A-CAATTTT-T----TT--CCGGA---CTT--------TTCCGACGAACCTTTGCAAAC
gi|14 : ACATCAAT-C--AAATCACTCACAACTGAGGACAATTTCGTTGCTGTTCATCAGC-TGGCCCGGAAGTGCAGGTACTAT-A-ACCCAAA---CTAACAA-TCCGAATGA--AT---ACATGGGA----T-GACact
gi|15 : aattAAT-T--ACATCAATCATA---GAAGTCATTTTCAT-------------TGCGACCCGGAAGTACAGGAACGAT-A-ACCCAGA---CTcgaa
gi|16 : tttttacttttgtgtttccgttgtatttttaagactcgataatatttacatgtTTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCAGAC-AGC-A-CAA-TTT-T----TTTACCAGA---CTTGTCCGAAGGTCCGACGAATCTTGGCGAACta
gi|17 : C-GG-AC-ATTTGGTCCGTCACGAT----TC-TA-----ACTTT------TA--CCGGAC-CG--A--GGCTAT-T----TTTA---------------------CCGACGAACCTTCGGAAACact
gi|20 : ACTTCAAT-C--AAATCACTCACAATCATAATCTATTTCAT-------------C-CAGCCTGGAA-AGCAGGAAAGAC-A-ACCCAAactgta
gi|22 : ACATCAAT-C--AAATCACTCACAACTGGAGTCAATTTCGT-------------
gi|3 : aattTCAAT-TCAAAATCACTCACAATCG-ATTC-ATTTCGT-------------C-CAGCCCAGAA-AGCAG-AAAGAC-A-ACCCAAA---CTAA-AT-TTCGAATATC-ATTAAGCCCTCGA----TTGACA--CCAGAAGCTT---CA-GAAGAAGAAAT----TCGAATTTGCTT-TGTTAACTTCAATTTACTGATTGATA-T----TTTATTCCG-GCA--AGCAAGAGTTTAATT-CTAAATG--CATGATTAAAAACTGAAA---T-GTATAGTA---ATAA---T-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTC-----ATA--TCAGAC-CGC-A-CCA--TT-T----TTTACCGGA---CTT--------GTCCGACGAACTTTGGCGAACtgctg
gi|4 : tttcacttttctgtctctgttgcacttttaaaaactggcaaatatttacggctcttCTTCAATTC--AAATCGCTCACAATCGTAATCTATTTCGT-------------C-CAGCACGGTAAAGCAGGAAAGAC-A-ACCCAAA---CTGATAT-TCCGAATAAC-ATTAAGCATACGA----T-GACA--CCTGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGC-TATGTTA--CTAAACTTACTGAT-GATA-AA-GATTGAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATT--CATAATTAAAAACTGAAT---TGG-ATAGAA---ACAAGTGT-CT-GGAATTGG-TTTTC-GGTAC-ATTTGGTC-----CGATC---TG-TATAGCTGTTTT------TA--TCGGAC-CGCAA-CGATTTT-T----CTAACCGGGAACCTT--------GTCCGATCAACCTC-GCAAAC
gi|5 : ACTTCAAT-C--AAATCACTCACAATCGCATTCTATTTCAT-------------C-CAGCCCGGAAAAGCAGGAAAGAG-A-ACCCAAA---CTAATAT-TCCGAATAAC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CT-GA-GGAGAAAT----TTGAATATGCT--TGTTT--CTCAACTTACTGGC-GATATAA-GATTTAT--CGTGCA--AGCAAG-ATTAAATT-A-AAATG--CATTATTAAAAACTGAAG---T-G-ATAGAA---AGAA--AT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CAAT----TG-TATAGCTGTTTT-----ATA--TCGAAC-CAC-T-CAATTTTAT----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAACa
gi|6 : GCACGAAAGATTATACCCAAAAAACTGATATATCCGAATATAGATAAAGCATACGAGATTT-GACATCCCAGAATCTTAATCCAGA-GAAAAGATAATTTCCACTTTGCT-ATGTTA--CT-AACTTA-TGAC-GATA-AAAGATTGAT--CGTGTATAAGCAAA--TTTAATTTCTAAATATTCATAATCAAAAACTAAATGTCC-G-ATAGAAGGAACAA--GT-CT-GGAATT-GCTTCCC-GG-ACTATGTTGTT-----CAACATAGTGCTTTAGCT-TTTG-----ATAATTC-GAC-CGT-ATCGATTTT-TTTTCTTTACCGA------T--------GTC--AC-AACCTTTGCAAAC
gi|8 : aaTAT-TCCGAATATC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CC-AA-GAAGAAAT----TCGAATTTGCTT-TATTA--CTCTGCTTACTGAC-GATA-AA-GATTTAT--GCCGCA--AGCAAG-GTCTAATT-CTAAATG--CATGATT-AAAATTGAAA---T-G-ATAGAA---ACTA--CTACT-GGAACT-G---TTCGGG-AC-ATTTGGTC-----TTAT----TG-TATAGCTGTTTT-----ATA--CCAGAC-CGC-A-CTA--TT-T----TTTACCGGA---CTTGTCCAACGGTCCGACGAACCTTGGCGAACactg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTGTTCACCAAAGTCCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATTAAATCTGTTGTGAATATTTATTTATTTTTGTTGTTGTAAATATGCATTGAAAAACGACCTGTCTCTGTCATATTTCAATAAAACATTGCATATGCGTTAAATCATAATAATAGCCAGTCGAGGAAACCTGTGGGTTCCGACGATGACTAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCA
Unaligned ( gi|7 ): TCAAACCAAATGTTATGAATATTTATATTTTTGGTGTTGTAAATATCCATTGAAAAATGGCCTGTCATGTTTCAATAAAATATTGCATTATCTGTTAAGTAATAAGCTAATCTGAAGTATTAAAGAGAGAAAAGTGTGGGTTCTGACGATGACTGAAAGAATTCACATCTGCTTCATTTCTCAGGTTCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCAAATATTTGAT
Unaligned ( gi|9 ): AGTGTTCACAAAGGTCCTCAGAACTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGATTGAATGTGTTATGAATATTTCTTTATTTTTGTGTTGTAAATGTGCATTGAAAGCGACCTGTCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTAAATCTTAATTAATA
Unaligned ( gi|10 ): ATTTATTTTTGTTGTAAATATGCATTGAAAAACGACCTGCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTTAAATCATAAGTAATAGCCAGTCTGCAGCTAGTACAAAGAAAAGAAAACCTGTGGGTTCCGACGATGTCTAA
Unaligned ( gi|12 ): TAATGAGCCAGTCTGCAGTACAAAGGAGAGAAAACCTGTGGGTCGGACGATGCTTAAGAATTCACGCTGCTTCACCTACAGTTCAAAACGTTTTACTCAAAGCAATGAAGTCAAAAATCGAACAATTTTT
Unaligned ( gi|18 ): TAATAAATCAAGTCAATTCACTCAAAACCAGAGTCAATTTGTTGCTGTGCATTAGTGGCCGGAACCTATGCAAGGACT
Unaligned ( gi|19 ): ACATAAATCAATTACTCACAGCTGGAACAATTTTGTTCCCAGTGCATCAACTGGTCGTGGAAGTGCAGGG
Unaligned ( gi|21 ): TTTTTTTTTCGAATATATGCTTTGAAAAAAGCGCAACCTGTCTCTGTCATGTTTCTGAAATAAA
Alignments
lowQualScore : 5555555555555 111 1111 111 1111 222 11 1111 11 11 11 111 1111 111 111 1111 11111 1111 111111 1111 33333333
lowQualScore : 1 5 66 333 1 5555555555555 5 99 66 5 000 0 5 999 1 1 2222 5 99 111 6 6 7777 666 11 5 8 3333 0 11 3 11 11 6 444 3 1111 5 5 000 000 5 5 0000 5 5 5 11111 3333 4 2 333333 66 0 4 4 4 0 9 4 9999 0000 66666666 5
lowQualScore : . . .. ... . ............. . .. .. . ... . . ... . . .... . .. ... . . .... ... .. . . .... . .. . .. .. . ... . .... . . ... ... . . .... . . . ..... .... . . ...... .. . . . . . . . .... .... ........ .
lowQualScore : 0 0 99 222 0 0000000000000 7 99 11 0 000 1 7 777 7 3 1111 7 22 777 7 7 0000 888 00 0 0 0000 6 00 8 00 22 7 333 7 0000 7 7 000 999 7 7 0000 0 0 0 11111 9999 4 9 000000 11 9 4 4 4 9 0 4 4444 8888 22222222 6
consensus : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
Reference ( family-6934 ) : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
gi|1 : TT-CTAAAT---CA--ATCAAAAAC-GAAT---T-G-ATAGAA----CA---GT-CTCGGAATT---TTTCC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCT-TTTTACAAAATA--TCGGACGCGT-A-CGATTTT-T----TTTATC
gi|11 : catttttatctgcttttttttgttcatttctttaaaaactcgcaaaattttgactataaacaatcttctaacatcagaagagtcgcacatcaccggatcataactattatgtcgtttcagtcagaaagaaacaggaacgacaccacaactgaatcaattctgatctattttaagtaataacgaatgcaaccaaaatcagacaaaagcaaatccttgagaaagaaaaatttatcagaaattaattgcaattaaaatatgttaaatacttaaacgtactcgaatgtattcatataacatgataagatatgatggtctgtgccggcataaacaaatgatattttgatccACATCGAC-C--GAATTACTCACAATCGGCGTCAATTTCGTTGCTGCGCATCAGC-TGGCCCGGAAGTGCAGGGGCGAT-A-ACCCAAA---CTAATGT-TTCGAATACT-ATTACGCACAGGA----T-GACG--ATGGAATCTA---CC-GA-Gaagtacc
gi|13 : ttAAACTGAGA---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-GTTTC-GG-AC-ATTTGGTC-----CGAC----TG-CATAGCTGTTGT-----ATA--TCGGAC-CGC-A-CAATTTT-T----TT--CCGGA---CTT--------TTCCGACGAACCTTTGCAAAC
gi|14 : ACATCAAT-C--AAATCACTCACAACTGAGGACAATTTCGTTGCTGTTCATCAGC-TGGCCCGGAAGTGCAGGTACTAT-A-ACCCAAA---CTAACAA-TCCGAATGA--AT---ACATGGGA----T-GACact
gi|15 : aattAAT-T--ACATCAATCATA---GAAGTCATTTTCAT-------------TGCGACCCGGAAGTACAGGAACGAT-A-ACCCAGA---CTcgaa
gi|16 : tttttacttttgtgtttccgttgtatttttaagactcgataatatttacatgtTTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCAGAC-AGC-A-CAA-TTT-T----TTTACCAGA---CTTGTCCGAAGGTCCGACGAATCTTGGCGAACta
gi|17 : C-GG-AC-ATTTGGTCCGTCACGAT----TC-TA-----ACTTT------TA--CCGGAC-CG--A--GGCTAT-T----TTTA---------------------CCGACGAACCTTCGGAAACact
gi|20 : ACTTCAAT-C--AAATCACTCACAATCATAATCTATTTCAT-------------C-CAGCCTGGAA-AGCAGGAAAGAC-A-ACCCAAactgta
gi|22 : ACATCAAT-C--AAATCACTCACAACTGGAGTCAATTTCGT-------------
gi|3 : aattTCAAT-TCAAAATCACTCACAATCGA--TTCATTTCGT-------------C-CAGCCCAGAA-AGCAG-AAAGAC-A-ACCCAAA---CTAA-AT-TTCGAATATC-ATTAAGCCCTCGA----TTGACA--CCAGAAGCTT---CA-GAAGAAGAAAT----TCGAATTTGCTT-TGTTAACTTCAATTTACTGATTGATA-T----TTTATTCCG-GCA--AGCAAGAGTTTAATT-CTAAATG--CATGATTAAAAACTGAAA---T-GTATAGTA---ATAA---T-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTC-----ATA--TCAGAC-CGC-A-CCA--TT-T----TTTACCGGA---CTT--------GTCCGACGAACTTTGGCGAACtgctg
gi|4 : tttcacttttctgtctctgttgcacttttaaaaactggcaaatatttacggctcttCTTCAATTC--AAATCGCTCACAATCGTAATCTATTTCGT-------------C-CAGCACGGTAAAGCAGGAAAGAC-A-ACCCAAA---CTGATAT-TCCGAATAAC-ATTAAGCATACGA----T-GACA--CCTGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGC-TATGTTA--CTAAACTTACTGAT-GATA-AA-GATTGAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATT--CATAATTAAAAACTGAAT---TGG-ATAGAA---ACAAGTGT-CT-GGAATTGG-TTTTC-GGTAC-ATTTGGTC-----CGATC---TG-TATAGCTGTTTT------TA--TCGGAC-CGCAA-CGATTTT-T----CTAACCGGGAACCTT--------GTCCGATCAACCTC-GCAAAC
gi|5 : ACTTCAAT-C--AAATCACTCACAATCGCATTCTATTTCAT-------------C-CAGCCCGGAAAAGCAGGAAAGAG-A-ACCCAAA---CTAATAT-TCCGAATAAC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CT-GA-GGAGAAAT----TTGAATATGCT--TGTTT--CTCAACTTACTGGC-GATATAA-GATTTAT--CGTGCA--AGCAAG-ATTAAATT-A-AAATG--CATTATTAAAAACTGAAG---T-G-ATAGAA---AGAA--AT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CAAT----TG-TATAGCTGTTTT-----ATA--TCGAAC-CAC-T-CAATTTTAT----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAACa
gi|6 : GCACGAAAGATTATACCCAAAAAACTGATATATCCGAATATAGATAAAGCATACGAGATTT-GACATCCCAGAATCTTAATCCAGA-GAAAAGATAATTTCCACTTTGCT-ATGTTA--CT-AACTTA-TGAC-GATA-AAAGATTGAT--CGTGTATAAGCAAA--TTTAATTTCTAAATATTCATAATCAAAAACTAAATGTCC-G-ATAGAAGGAACAA--GT-CT-GGAATT-GCTTCCC-GG-ACTATGTTGTT-----CAACATAGTGCTTTAGCT-TTTG-----ATAATTC-GAC-CGT-ATCGATTTT-TTTTCTTTACCGA------T--------GTC--AC-AACCTTTGCAAAC
gi|8 : aaTAT-TCCGAATATC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CC-AA-GAAGAAAT----TCGAATTTGCTT-TATTA--CTCTGCTTACTGAC-GATA-AA-GATTTAT--GCCGCA--AGCAAG-GTCTAATT-CTAAATG--CATGATT-AAAATTGAAA---T-G-ATAGAA---ACTA--CTACT-GGAACT-G---TTCGGG-AC-ATTTGGTC-----TTAT----TG-TATAGCTGTTTT-----ATA--CCAGAC-CGC-A-CTA--TT-T----TTTACCGGA---CTTGTCCAACGGTCCGACGAACCTTGGCGAACactg
blockSeqs : A T CA AGG A TGCTGTTCATCAG G GT TT T AAA A TAG T A GATT T TC AAT A A AATT TA . A . TAA . T TA G T ATT G TGTC G T GGA GTG A . GGT G T T CGTCA ATAG C G A AT . A T T A TTTC GAAC GTCCGAAG G
blockSeqs : T . . AAG A . . GT T . . . TC T C . . . . . . . TA . C . AAA . T . A . G A A . . . G . . GCT . . . . C . G A . . . . C . . A GTCCAACG C
blockSeqs : A . . TAA T . . AA T . . . AC T A . . . . . . . TT . C . AA . T . G . T T A . . . A . . GG . . . . . . A A . . . . T . . A . G
blockSeqs : T . . GAG A . . AA C . . . AC A C . . . . . . . T . . . AA . C . . . G A T . . . G . . GT . . . . . . G A . . . . T . . A . G
blockSeqs : T . . TAA C . . A C . . . TC T A . . . . . . . G G G . . . C . . GT . . . . . . G A . . . . T . . A . T
blockSeqs : . . CAT T . . A C . . . A . C . . A . . . . . . G . . . . . . G A . . . . . . . . . G
blockSeqs : . . A T . G . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : ************* ** AA** ** G* G** GT** A*****
originalCons : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
finalCons : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATAAA--GATTTAT--CGTGCA--AGCAAGG-TTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACTGT--TTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTTA-----TA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTGTTCACCAAAGTCCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATTAAATCTGTTGTGAATATTTATTTATTTTTGTTGTTGTAAATATGCATTGAAAAACGACCTGTCTCTGTCATATTTCAATAAAACATTGCATATGCGTTAAATCATAATAATAGCCAGTCGAGGAAACCTGTGGGTTCCGACGATGACTAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCA
Unaligned ( gi|7 ): TCAAACCAAATGTTATGAATATTTATATTTTTGGTGTTGTAAATATCCATTGAAAAATGGCCTGTCATGTTTCAATAAAATATTGCATTATCTGTTAAGTAATAAGCTAATCTGAAGTATTAAAGAGAGAAAAGTGTGGGTTCTGACGATGACTGAAAGAATTCACATCTGCTTCATTTCTCAGGTTCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCAAATATTTGAT
Unaligned ( gi|9 ): AGTGTTCACAAAGGTCCTCAGAACTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGATTGAATGTGTTATGAATATTTCTTTATTTTTGTGTTGTAAATGTGCATTGAAAGCGACCTGTCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTAAATCTTAATTAATA
Unaligned ( gi|10 ): ATTTATTTTTGTTGTAAATATGCATTGAAAAACGACCTGCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTTAAATCATAAGTAATAGCCAGTCTGCAGCTAGTACAAAGAAAAGAAAACCTGTGGGTTCCGACGATGTCTAA
Unaligned ( gi|12 ): TAATGAGCCAGTCTGCAGTACAAAGGAGAGAAAACCTGTGGGTCGGACGATGCTTAAGAATTCACGCTGCTTCACCTACAGTTCAAAACGTTTTACTCAAAGCAATGAAGTCAAAAATCGAACAATTTTT
Unaligned ( gi|18 ): TAATAAATCAAGTCAATTCACTCAAAACCAGAGTCAATTTGTTGCTGTGCATTAGTGGCCGGAACCTATGCAAGGACT
Unaligned ( gi|19 ): ACATAAATCAATTACTCACAGCTGGAACAATTTTGTTCCCAGTGCATCAACTGGTCGTGGAAGTGCAGGG
Unaligned ( gi|21 ): TTTTTTTTTCGAATATATGCTTTGAAAAAAGCGCAACCTGTCTCTGTCATGTTTCTGAAATAAA
Alignments
lowQualScore : 5555555555555 111 1111 111 1111 222 11 1111 11 11 11 111 1111 111 111 1111 11111 1111 111111 1111 33333333
lowQualScore : 1 5 66 333 1 5555555555555 5 99 66 5 000 0 5 999 1 1 2222 5 99 111 6 6 7777 666 11 5 8 3333 0 11 3 11 11 6 444 3 1111 5 5 000 000 5 5 0000 5 5 5 11111 3333 4 2 333333 66 0 4 4 4 0 9 4 9999 0000 66666666 5
lowQualScore : . . .. ... . ............. . .. .. . ... . . ... . . .... . .. ... . . .... ... .. . . .... . .. . .. .. . ... . .... . . ... ... . . .... . . . ..... .... . . ...... .. . . . . . . . .... .... ........ .
lowQualScore : 0 0 99 222 0 0000000000000 7 99 11 0 000 1 7 777 7 3 1111 7 22 777 7 7 0000 888 00 0 0 0000 6 00 8 00 22 7 333 7 0000 7 7 000 999 7 7 0000 0 0 0 11111 9999 4 9 000000 11 9 4 4 4 9 0 4 4444 8888 22222222 6
consensus : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
Reference ( family-6934 ) : ACNTCAAT-C--AAATCACTCACAATCGNAGTCNATTTCGT-------------C-CGGCCCGGAAGNGCAGGAAAGAC-A-ACCCAAA---CTAATAT-TCCGAATANC-ATTAAGCATACGA----T-GACA--CCAGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGCTTATGTTA--CTCAACTTACTGAC-GATA-AA-GATTTAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATG--CATGATTAAAAACTGAAN---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCGGAC-CGC-A-CGATTTT-T----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAAC
gi|1 : TT-CTAAAT---CA--ATCAAAAAC-GAAT---T-G-ATAGAA----CA---GT-CTCGGAATT---TTTCC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCT-TTTTACAAAATA--TCGGACGCGT-A-CGATTTT-T----TTTATC
gi|11 : catttttatctgcttttttttgttcatttctttaaaaactcgcaaaattttgactataaacaatcttctaacatcagaagagtcgcacatcaccggatcataactattatgtcgtttcagtcagaaagaaacaggaacgacaccacaactgaatcaattctgatctattttaagtaataacgaatgcaaccaaaatcagacaaaagcaaatccttgagaaagaaaaatttatcagaaattaattgcaattaaaatatgttaaatacttaaacgtactcgaatgtattcatataacatgataagatatgatggtctgtgccggcataaacaaatgatattttgatccACATCGAC-C--GAATTACTCACAATCGGCGTCAATTTCGTTGCTGCGCATCAGC-TGGCCCGGAAGTGCAGGGGCGAT-A-ACCCAAA---CTAATGT-TTCGAATACT-ATTACGCACAGGA----T-GACG--ATGGAATCTA---CC-GA-Gaagtacc
gi|13 : ttAAACTGAGA---T-G-ATAGAA---ACAA--GT-CT-GGAACT-G-GTTTC-GG-AC-ATTTGGTC-----CGAC----TG-CATAGCTGTTGT-----ATA--TCGGAC-CGC-A-CAATTTT-T----TT--CCGGA---CTT--------TTCCGACGAACCTTTGCAAAC
gi|14 : ACATCAAT-C--AAATCACTCACAACTGAGGACAATTTCGTTGCTGTTCATCAGC-TGGCCCGGAAGTGCAGGTACTAT-A-ACCCAAA---CTAACAA-TCCGAATGA--AT---ACATGGGA----T-GACact
gi|15 : aattAAT-T--ACATCAATCATA---GAAGTCATTTTCAT-------------TGCGACCCGGAAGTACAGGAACGAT-A-ACCCAGA---CTcgaa
gi|16 : tttttacttttgtgtttccgttgtatttttaagactcgataatatttacatgtTTTGGTC-----CGAT----TG-TATAGCTGTTTT-----ATA--TCAGAC-AGC-A-CAA-TTT-T----TTTACCAGA---CTTGTCCGAAGGTCCGACGAATCTTGGCGAACta
gi|17 : C-GG-AC-ATTTGGTCCGTCACGAT----TC-TA-----ACTTT------TA--CCGGAC-CG--A--GGCTAT-T----TTTA---------------------CCGACGAACCTTCGGAAACact
gi|20 : ACTTCAAT-C--AAATCACTCACAATCATAATCTATTTCAT-------------C-CAGCCTGGAA-AGCAGGAAAGAC-A-ACCCAAactgta
gi|22 : ACATCAAT-C--AAATCACTCACAACTGGAGTCAATTTCGT-------------
gi|3 : aattTCAAT-TCAAAATCACTCACAATCGA--TTCATTTCGT-------------C-CAGCCCAGAA-AGCAG-AAAGAC-A-ACCCAAA---CTAA-AT-TTCGAATATC-ATTAAGCCCTCGA----TTGACA--CCAGAAGCTT---CA-GAAGAAGAAAT----TCGAATTTGCTT-TGTTAACTTCAATTTACTGATTGATA-T----TTTATTCCG-GCA--AGCAAGAGTTTAATT-CTAAATG--CATGATTAAAAACTGAAA---T-GTATAGTA---ATAA---T-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CGAT----TG-TATAGCTGTTTC-----ATA--TCAGAC-CGC-A-CCA--TT-T----TTTACCGGA---CTT--------GTCCGACGAACTTTGGCGAACtgctg
gi|4 : tttcacttttctgtctctgttgcacttttaaaaactggcaaatatttacggctcttCTTCAATTC--AAATCGCTCACAATCGTAATCTATTTCGT-------------C-CAGCACGGTAAAGCAGGAAAGAC-A-ACCCAAA---CTGATAT-TCCGAATAAC-ATTAAGCATACGA----T-GACA--CCTGAAGCTT---CC-GA-GAAGAAAT----TCGAATTTGC-TATGTTA--CTAAACTTACTGAT-GATA-AA-GATTGAT--CGTGCA--AGCAAG-GTTTAATT-CTAAATT--CATAATTAAAAACTGAAT---TGG-ATAGAA---ACAAGTGT-CT-GGAATTGG-TTTTC-GGTAC-ATTTGGTC-----CGATC---TG-TATAGCTGTTTT------TA--TCGGAC-CGCAA-CGATTTT-T----CTAACCGGGAACCTT--------GTCCGATCAACCTC-GCAAAC
gi|5 : ACTTCAAT-C--AAATCACTCACAATCGCATTCTATTTCAT-------------C-CAGCCCGGAAAAGCAGGAAAGAG-A-ACCCAAA---CTAATAT-TCCGAATAAC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CT-GA-GGAGAAAT----TTGAATATGCT--TGTTT--CTCAACTTACTGGC-GATATAA-GATTTAT--CGTGCA--AGCAAG-ATTAAATT-A-AAATG--CATTATTAAAAACTGAAG---T-G-ATAGAA---AGAA--AT-CT-GGAACT-G-TTTTC-GG-AC-ATTTGGTC-----CAAT----TG-TATAGCTGTTTT-----ATA--TCGAAC-CAC-T-CAATTTTAT----TTTACCGGA---CTT--------GTCCGACGAACCTTGGCGAACa
gi|6 : GCACGAAAGATTATACCCAAAAAACTGATATATCCGAATATAGATAAAGCATACGAGATTT-GACATCCCAGAATCTTAATCCAGA-GAAAAGATAATTTCCACTTTGCT-ATGTTA--CT-AACTTA-TGAC-GATA-AAAGATTGAT--CGTGTATAAGCAAA--TTTAATTTCTAAATATTCATAATCAAAAACTAAATGTCC-G-ATAGAAGGAACAA--GT-CT-GGAATT-GCTTCCC-GG-ACTATGTTGTT-----CAACATAGTGCTTTAGCT-TTTG-----ATAATTC-GAC-CGT-ATCGATTTT-TTTTCTTTACCGA------T--------GTC--AC-AACCTTTGCAAAC
gi|8 : aaTAT-TCCGAATATC-ATTAAGCCTACGA----T-GACA--CCAGAAGCTT---CC-AA-GAAGAAAT----TCGAATTTGCTT-TATTA--CTCTGCTTACTGAC-GATA-AA-GATTTAT--GCCGCA--AGCAAG-GTCTAATT-CTAAATG--CATGATT-AAAATTGAAA---T-G-ATAGAA---ACTA--CTACT-GGAACT-G---TTCGGG-AC-ATTTGGTC-----TTAT----TG-TATAGCTGTTTT-----ATA--CCAGAC-CGC-A-CTA--TT-T----TTTACCGGA---CTTGTCCAACGGTCCGACGAACCTTGGCGAACactg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTGTTCACCAAAGTCCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATTAAATCTGTTGTGAATATTTATTTATTTTTGTTGTTGTAAATATGCATTGAAAAACGACCTGTCTCTGTCATATTTCAATAAAACATTGCATATGCGTTAAATCATAATAATAGCCAGTCGAGGAAACCTGTGGGTTCCGACGATGACTAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCA
Unaligned ( gi|7 ): TCAAACCAAATGTTATGAATATTTATATTTTTGGTGTTGTAAATATCCATTGAAAAATGGCCTGTCATGTTTCAATAAAATATTGCATTATCTGTTAAGTAATAAGCTAATCTGAAGTATTAAAGAGAGAAAAGTGTGGGTTCTGACGATGACTGAAAGAATTCACATCTGCTTCATTTCTCAGGTTCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCAAATATTTGAT
Unaligned ( gi|9 ): AGTGTTCACAAAGGTCCTCAGAACTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGATTGAATGTGTTATGAATATTTCTTTATTTTTGTGTTGTAAATGTGCATTGAAAGCGACCTGTCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTAAATCTTAATTAATA
Unaligned ( gi|10 ): ATTTATTTTTGTTGTAAATATGCATTGAAAAACGACCTGCCTCTGTCATGTTTCAATAAAACATTGCATTATGCGTTAAATCATAAGTAATAGCCAGTCTGCAGCTAGTACAAAGAAAAGAAAACCTGTGGGTTCCGACGATGTCTAA
Unaligned ( gi|12 ): TAATGAGCCAGTCTGCAGTACAAAGGAGAGAAAACCTGTGGGTCGGACGATGCTTAAGAATTCACGCTGCTTCACCTACAGTTCAAAACGTTTTACTCAAAGCAATGAAGTCAAAAATCGAACAATTTTT
Unaligned ( gi|18 ): TAATAAATCAAGTCAATTCACTCAAAACCAGAGTCAATTTGTTGCTGTGCATTAGTGGCCGGAACCTATGCAAGGACT
Unaligned ( gi|19 ): ACATAAATCAATTACTCACAGCTGGAACAATTTTGTTCCCAGTGCATCAACTGGTCGTGGAAGTGCAGGG
Unaligned ( gi|21 ): TTTTTTTTTCGAATATATGCTTTGAAAAAAGCGCAACCTGTCTCTGTCATGTTTCTGAAATAAA