lowQualScore : 22 44444444444444444444444444444 333 111 1 22222222222 7777777777777 111 22222 1 1 555555 1 1 11 1 99999999999999999999999999999 2 4 1 2222 111 1 44444444 222 2 555555555 11 11 2222222222 6666666666666666666666666666 11 222 6666666666 1111111111 22 11111111 11 33333333333333 6666666666666 33333333 222 333333 33333333333 33333333333 2222 333 2 4 3 1
lowQualScore : 8 1 33 11111111111111111111111111111 6 666 3 55 999 4 2 1 3 44444444444 5 1 1 7777777777777 444 3 00000 4 0 6 333333 0 0 22 1 55555555555555555555555555555 4 6 6 99 0 2 8 3333 333 6 00000000 0 6 8 0 0 777 3 0 0 111111111 3 44 77 1 2222222222 1 7777777777777777777777777777 555 22 0 8 33 55 999 4 7777777777 55 4 1 2 6 1 77 8 0 8888 7777777777 2 2 3 99 33333333 3 00 8 33333333333333 6666666666666 22222222 6 111 6 666666 99 11111111111 11111111111 6 2222 6 111 6 6 6 99 3 2 5 6 0 3 2 1
lowQualScore : . . .. ............................. . ... . .. ... . . . . ........... . . . ............. ... . ..... . . . ...... . . .. . ............................. . . . .. . . . .... ... . ........ . . . . . ... . . . ......... . .. .. . .......... . ............................ ... .. . . .. .. ... . .......... .. . . . . . .. . . .... .......... . . . .. ........ . .. . .............. ............. ........ . ... . ...... .. ........... ........... . .... . ... . . . .. . . . . . . . .
lowQualScore : 9 1 22 88888888888888888888888888888 0 000 7 55 999 0 5 4 0 55555555555 1 0 4 8888888888888 222 2 55555 5 0 0 000000 0 0 00 5 22222222222222222222222222222 0 7 2 22 0 8 0 6666 888 0 66666666 8 0 0 8 8 888 7 0 8 777777777 7 00 77 5 7777777777 0 0000000000000000000000000000 444 22 9 0 11 55 222 0 7777777777 55 5 2 5 6 4 44 0 6 5555 5555555555 2 0 6 22 22222222 6 66 9 66666666666666 0000000000000 88888888 7 000 7 333333 22 77777777777 77777777777 3 5555 7 000 7 7 7 22 2 7 7 7 0 0 0 8
consensus : CTAT-TCCAGAAA-TAACCAAACGGGGGTA------------ATG--CG---T-ATCAACCGAAT-TTTATT--TTGA-ATGGGTG-GTCGTATTTTCATTTTTT-----------TNTTTTTTTTTTTTTAGGTCCG---TTGGCTTTCC-ACGGTAGCCTAAGGTCTTT-AAAACTTCAAA--CA-AATC-C-TC-ACTACNAACAAGAACT----AT--CCAN-----AGC----ANAGGGCACTGACTGGATTTC-AAATCTCG-AAAAC--GTGCCG-ACCTTTTCG-AAA-A--ATTTA-CAAACAACA-CACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCATAC-ATGG-CACAAAATATTT-AATTTAATAAAACC-TGA--A-NTACCTAC-ACT------AT---------AAAAATANA-ATATTT--AAAACCC-AACCACGG--ACCT-AAAAAAAAA-TAAA-A--T-AAAAA--TGAAAATACGACCACCCATCAAAAT-AAAA-TTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGA-AT--------AG-CCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCA-G--C--GG-CTGCAAGTAA--GA-G--CTTTTGCTA-TAGGCATTTG-CGCGTT-GCTTTTGTTCTC-AAGGT--GCCCGTATG-----------GCAG-----------CGAAATCGTCGGGCACGT-CGGCGAGTT-GAGCCG-TTGTTGCATTAC-TCG--CCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( gi|1 ) : CTAT-TCCAGAA--TAACCAAACGGGGGTA------------ATG--C----T-ATCAACCAA---TTTATT--TTGA-ATGGGTG-GTCGTATTTTCATCTTTT-----------TTTTTTTTTTTTTTTAGGT--GT--TTG---TTCC-GTAGTAGCCTAAGGTTTTT-AAA-CTTCAAAAACA-AATC-C-TC-GCTACTAACAA--ACT----AT--CTAA-----AAT----ATAGGACACTAACTGGATTTC-AAATCTCGAAAAAC--GTGCCGTACTTTTTCG-AAA-G--ATTTA-CAAA-AACA-CTCAG-GCAGCAATAA-AATTATATT-T-CAAATTCAATA-CCATACGATGGATACAAAATATTT-AATTCAATAAAACC-TGA--A-TTACCTAC-ACT------AT---------AAAAATATA-ATATTT--AAAACCC-AACCACGG--ACCTTAAAAAAAAA-TAAAGGT-T-AAAAA--TAAAAATACGACCACCCATCAAAAT-AAAA-TTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGTAT--------AG-CCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCA-AATCAAGGACTGCAAGTAA--G--G--CTTTTGCTA-TAGGCATTCT-CACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATG-----------GCAG-----------CGAAATCGTCGGGCACGT-GGCCGAGTT-GAGCCG-T-GTTGCATT-C-TCA--CCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|4 : CTATATCCAGAA----AT-AAACGGGGGTA------------ATG--CGTATTGATCAACCGAAT-TTTATT--TTGA--TGAGTG-GTCGTATTTTCATTTTCA-----------TTTTTT
gi|5 : aaaacaacacagcagcaataaaattatattgtcaaattcaatatccatacatgacacaaaatgtttattttaataaaaaaatatatatacttatttaaaacacgacctCTAT-TCCAGAAA-TAACCAAACGGG--TA------------ATG--CG---T-ATCAACCGAATTTTTATT--TTGA--TGGGTG-GTCGTATTTTCAT--TTC-----------TATATTTTTTTTTTTAGGTCCGTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTT-AAAACTTCAAA--CA-AATC-CCTC-GCTACCACCAAGAATT----ATATCCAA-----AATTAATATAGGGAACTGACTGGATTGC-AAATCTCGAAAA-C--GTGCCA-ACCTTTTCG-AAA-ATAATTTA-CAAACAACA-CACAG-CC--CAATAA-AATTATATTAT-CAAATTAAATATCCATAC-ATGG-CA-AAAATATTT-AATTTAATAAAACC-TTA--A-TTACCTAC-ccctaatgaagtatcattttgtaagaaaatcttcagggactacaagtaagagcttttgctataggcatttgcgcgttgctttggttcgtatggcagttatttagcagcaaaatcgtcgggcacatcggcgagttgagccgttgttgcattactcgccatgttgaataacgttg
gi|6 : atattttatgtagggtCTAT-TCCAGAA--ATACCAA-CGGGG-TA------------ATG--CG---T-ATCAACCGAATTTTTATT--TTGA------TGTGTCGTATTTTCATCTTTTTATTTTTTTTT------TTTTTTTTTAGGTCCGG--TTGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAA-CTTCAAA---A-AATCTC-TCTACCACCAAGAA--ACTATAGAT--CCAAAAATTAAT----ATAGGGAACTGACTGGATTTC--AATCTCG-AAAAC--GTGCCG-ACCTTTTCGAAAA-G--ATTTATCAAACAACA-C---A-GCAGCAATAAGAATTATATTATGCAAATTCAATATCCATAACATGG-CA-AAAATATTTCAATTTAAT-AAACC-T----A-TTACCTAC-
gi|14 : attttaattagggCTAT-TCCAGAAA-TAACCAAACGGGGGGG------------ACGGGC----G-G-CAACCGA---TTTTTT--TTAG-ATGGGTA-GTCGTATATTCATTTATT-----------TGTTTT
gi|11 : tatttttaaatcccaaccacggacctCTAT-TCCAGAAA-TAACCAAAAGGGG---------------AGG--G----G-GGCAACCGA---TTTTTT--TTAG-ATGGGCT-GTCGTATATTCATTTATT-----------TTTTc
gi|17 : acatggcataaaataataattacagaaaacctgaaatgaccaaccacccttgaccaaaaaaaaaaaaaatattttaaaaacccaaccatggacctCTATATCCAGAAA-TAACCAAACGGGGATcc
gi|7 : CTAT-TC-AGAA--TAAC-AAACGGGGGGGGGGGGGGGAGGGACG--C----G-G-CAACCGA---TTTTTTATTTAG-ATGGG---GTC-TATATTCATATTTT-----------TTTccataataaaatatcgttttgtaata
gi|12 : gtacttcaacacgatcctcactacaaacaagaacgccacagcaaagggctctaaaaggatttcaaaatctcggaaacgtgccgacttttcgaatttttttttaaaacacggcagcatacccatacatgcacaaattaattacaaaactgtaagacaccaggccatgaaagaaaatatttttaatatcccaaccacggactctCTAT-TC-AGAAATTAACCAAAAGGGAGGG------------GGG-----------CAACCGA---TTT-TT--TTAAGATGGGCT-GT-GTATATTCATTATTT-----------TTTcc
gi|2 : tttaataccatcggcataaaataataattacagaaaactgatgaccaaccacccttgacaaaaaaaaaaaaaatatttaaaacccaaccatggccacct-TCCAGAAA-TAACCAAAC-GGGGTA------------ATG--CG---T-ATCAACCGAAT-TTTATT--TTG--ATGGGTG-GTGGCATTTTCA--TTTT-----------TATCTTAATTTTTTTAGGT--c
gi|8 : tgcacctatttacacattatattatttaaaccccgaaccagggAA--TAACCAAACGGGGGTA------------ATG--CG---T-ATCAACtattacattttagccctaaataaaatatcattttgtaggaaggaggaggggagaaaatctcagggtctgtaagtagccgcttttgctaataggcattttgcacgtttgttattgtctcaaggtgcccgtatggcagcaaatcgtcgggcacgtagggcgagtttgagccgttgttcattcctattccatgttgatgatgtcgagcatcggcggagttatctactttgctcggtgggcgtggcttcggcgatacgttaatct
gi|3 : A--TGACCGAACGGGGGTA------------ATG--CG---T-ATCAACCGAAT-TTTATT--TTGA--TGGGTG-GTGGCAGTTTCATTTTTTAA---------TCTTAATTTTTTTTTAGG--------------TCC-GTGGT----T--GGGTTTT-AAA-TTgtaaccctataataaaatatcattttgtaagaaaatcttcagggtctgcaagtaagagcttttgctataggcatttgcacgttgcttttgtctcaaggtgcccgtatggcagcaaaatcgtcgggcacgtcggcgagttgagccgttgttccattcctcaccatgttgaataatgttgatgatgtcggagcatcggcggagttatctacctttgctcggtgggcgtggcttcggcgatacgtta
gi|15 : accatgcacctatttaaaaaatattAACCGAAT-TTTATT--TTGA--TGGGTG-GTGGTGTTTTCAT-TTTT-----------TATCTTATTTATTTTAGGT--gtagccctaataaaatatcattttgtaagaaaatcttcagggtcctgcaagtaaagagcttttgctataggcatttgcacgttgctcttgtctcaaggtgcccctatggcagcaaaatcgtcgggcacgtcggcgagttgagccgttgttccattcctcaccatgtgaataatgtttgatgatgtcggagcaaccggcgggagtatctacctttgctcggagggcgtggcttcggcgaaacgttaat
gi|13 : gcacctatttaaaaatatatatgtttaaacccaaccatgg---TTCC-ACAGTAG-----GGTGTTC-AAAACTTCAAA--CG-ATTC-C-TC-ACTACAAACAAGAACT----TG--CCAC-----AGC----AAAGGACACTAACTAGATTTC-AAATCTCGGAAAACGTGTGCCA-ACCTTTTCG-AAA-A--AATT
gi|7 : A-CTTCAA---CACGATC-C-TC-ACTACAAACAAGAACG--------CCAC-----AGC----AAAGGGCTCTAAAAGGATTTCAAAATCTCG-GAAAC--GTGCCG-AC-TTTTCG-AAT-T--TTTTT-TTAA-AACA-C---G-GCAGCA--------TAC------------------CCATAC-ATG--CACAAA----TT-AATT--ACAAAACTGTAA--G-ACACC-AG-GCC------AT---------GAAAG-AAA-ATATTTTTAATATCCCAACCACGG--ACTCT--AAAAAAA-TA------T-GAATA--TA-------GAC--CCCATCTAAATAAAAA-ATCGGTTGCC----GCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCTGA--AT--------AG-CC
gi|19 : gtAGGACACTGACTGGATTTC-AAATTTCG-AAAAC--GT
gi|16 : caagaACTAACTGGATTTC-AAATCTCG-AAAAC--GCGCTG-ACCTTTTCG-AAACA--ATTCA-C-AA-AACA-A-CAGAGCAGCATTAA-AAT--GATC-T-AAAATTTAGTA-
gi|4 : AA-AACAACACAG--CAGCAATAA-AATTATATTGT-CAAATTCAATATCCATAC-ATG-ACACAAAATGTTT-ATTTTAATAAAA-----A--A-ATATATAT-ACT----------------------------TATTT--AAAACAC-GACC----------TAAAAAA------------T-GAAAA--TGAAAATACGACCACTCATCAAAAT-AAAA-TTCGGTTGATCAATACG----------CATTACCCCCGTTT-----ATTTCTGGATAT--------AG-CCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCTTCA-G-----GGACTACAAGTAA--GA-G--CTTTTGCTA-TAGGCATTTG-CGCGTT-GCTTTGGTTC--------------GTATGGCAGTTATTTAGCAG-----------CAAAATCGTCGGGCACAT-CGGCGAGTT-GAGCCGTT-GTTGCATTAC-TCG--CCATGTTGAATAACG-TTG
gi|12 : TTTAATA-CCAT-CG--GCATA--AAATAAT--AATTACAGAAAAC--TGATGA-CCAACCAC-CCTTGACAAAA---------AAAAAAAAA-ATATTT--AAAACCC-AACCATGGCCACCT----AAAAAA-T------------AA--TGAATATAC-ACAGCCCATCTTAA--AAAA-ATCGGTT---------G----------CCCCCCTCCCTTTTGGTTAATTTCTGA--AT--------AG-C
gi|11 : ATGG-CATAAAATAAT--AATTACAGAAAACC-TGA--AATGACCAACCACC------CTTGACCAAAAAAAAAAAAA-ATATTTTAAAAACCC-AACCATGG--ACCT----AAAAAA-T-----------AAA--TGAATATACGACAGCCCATCTAAA--AAAA-ATCGGTTGCC----CCC----------C----TCCCCTTTTGGTT-ATTTCTGGA-AT--------AG-CC
gi|2 : acTATTTAC-AC-------AT--------------TATA-TTATTT--AAACCCCGAACCAGGG--ACCT---AAAAAAA-TTAAGAT---AAAAA--TGAAAATGCCACCACCCATCAAAAT-AAAA-TTCGGTTGAT----ACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAG-CCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT-------CAGGGTCTGTAAGTA---GCCG--CTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CTC-AAGGT--GCCCGTATG-----------GCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCG-TTGTT-CATT-C-CTATTCCATGTTGA-----------TGATGTCG-AGC-ATCGGCGGAGTTATCTA-CTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|3 : tgcaccACCTAT--TT------A----------AAAAATATT-A-ATTT--AAAACCC-AACCACGG--ACC-TAAAAAAAAA-TTAAGAT-TAAAAAA--TGAAACTGCCACCACCCATCAAAAT-AAAA-TTCGGTTGAT----ACG----------CATTACCCCCGTTCGGTC-A--------TGT--------AG-CCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAGGGTC-----CTGCAAGTAAAGA--G--CTTTTGCTA-TAGGCATTTG-CACGTT-GCTCTTG-TCT-CAAGGT--GCCCCTATG-----------GCAG-----------CAAAATCGTCGGGCACGT-CGGCGAGTT-GAGCCGTT-GTTCCATTCC-TCA--CCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAATct
gi|15 : accatgcACCTA----T------TT---------AAAAATATATATGTTT--AAA-CCC-AACCATGG--ACCT--AAAATAAA-TAA-GAT-A-AAAAA--TGAAAACACCACCACCCATCAAAAT-AAAA-TTCGGTT
gi|6 : gcTA-CTGTTG--GAAAGCC-AACC--GG--ACCTAAAAAAAAAA-AAAAAAAAT-AAAAAGATGAAAATACGAC-AC--ATCAAAAT-AAAAATTCGGTTGAT----ACG----------CATTA-CCCCG-TTGG-T-ATTTCTGGA-AT--------AG-CCCTA--ATTAAAAT
gi|14 : -ATTTTT--AAATCCC-AACCACGG--ACCT--AAAACAAA-TAAA-------------TGAATATACGACTACCCATCTAAAA-AAAA-T-CGGTTGCC----GCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA-AT--------AG-Cgcctaaggtctttaaaacttcaaaaaatctctctaccaccaagaaactatagatccaaaaattaatatagggaactgactggatttcaatctcgaaaacgtgccgaccttttcgaaaagatttatcaaacaacacagcagcaataagaattatattatgcaaattcaatatccataacatggcaaaaatatttcaatttaataaacctattacctac
gi|5 : tAAAGCC-AACCACGG--ACCTAAAAAAAAAAATA------T-AGAAA--TGAAAATACGACCACCCATCAAAAT-AAAAATTCGGTTGAT----ACG----------CATTA--CCCGTTTGGTT-ATTTCTGGA-AT--------AGACCCTAC-A-TAAAATAT
gi|8 : GTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATT-------GT--------AA-CCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCTTCA-G-----GGTCTGCAAGTAA--GA-G--CTTTTGCTA-TAGGCATTTG-CACGTT-GCTTTTGT-CTC-AAGGT--GCCCGTATG-----------GCAG-----------CAAAATCGTCGGGCACGT-CGGCGAGTT-GAGCCG-TTGTTCCATT-CCTCA--CCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAccacagtagcctaaggtctttaaaacttcaaacaaatccctcgctaccaccaagaattatatccaaaattaatatagggaactgactggattgcaaatctcgaaaacgtgccaaccttttcgaaaataatttacaaacaacacacagcccaataaaattatattatcaaattaaatatccatacatggcaaaaatatttaatttaataaaaccttaattacctac
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGATAT--------AG-CCATA--A-TAAAATATCGTTTTGTA--------------A
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA-------------------TGTAAGTAA--G--AAACTTT-GCTA-ATGGCATTCG-CGCGTT-GTTTTT-CTCTC-AAGGTCGGTTCATATG-----------GCAGATATTTTGCATCGAAATCGTCGGGGACGT-CGGCAAGTT-CTGCCGGT-GTTGTGTTAC-TCG--CCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATTta
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCTTCA-AATCAAGGACTGCAAGTAA--GA-G--CTTTTGCTA-TAGGCATTTG-CACGTT-GCTTTTGT-CTC-AAGGT--GCCCGTATG-----------GCAG-----------CGAAATCGTCGGGCACGT-CGGCGAGTT-GAGCCG-TTGTTGCATTAC-TCA--CCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTAg
gi|20 : GAATAATG-TTGATGATGTCGGAGC-ATCGAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTCTACAGTAGGGTGTTTAACAAGAACTCGCCACAGCAAAGGCACTAACTGGA
Alignments
lowQualScore : 22 22 1 2 1 33333 111 222 1 11 33333333 1111111111111 2222 1 22222 111 11 1111111 44444444444444444444444 66666666666 111 2222222222222222222 222222 22222222222222 5555555555 1 22222222222
lowQualScore : 7 7 7 11 6 00 3 3 3 1 33333 1 7 888 333 6 0 6 2 0 0 8 11 6 8 2 1 6 33333333 8888888888888 1 5 5 5 77 6 0000 8 0 22222 6 3 555 1 9 5 5 5 8 1 00 88 2222222 1 4 88888888888888888888888 6 2 4 66 66 4 4 4 66 4 4 33333333333 66 000 2 3 2 2 66 1 2222222222222222222 3 0 4 5 333333 777 66 5 99999999999999 1 6666666666 5 1 5 5 1 5 9 5 77 77777777777 4 5 5 1 4 8 5 2 4 1 5 5 6
lowQualScore : . . . .. . .. . . . . ..... . . ... ... . . . . . . . .. . . . . . ........ ............. . . . . .. . .... . . ..... . . ... . . . . . . . .. .. ....... . . ....................... . . . .. .. . . . .. . . ........... .. ... . . . . .. . ................... . . . . ...... ... .. . .............. . .......... . . . . . . . . .. ........... . . . . . . . . . . . . .
lowQualScore : 3 3 3 77 7 77 3 7 3 0 33333 0 3 333 333 7 0 0 5 2 8 0 00 0 0 2 0 7 88888888 8888888888888 0 7 7 7 99 7 3333 0 8 33333 7 2 555 7 8 7 7 7 9 9 77 99 0000000 0 0 88888888888888888888888 6 8 4 11 11 4 9 4 11 4 4 66666666666 11 777 6 9 9 6 77 9 8888888888888888888 4 6 0 0 555555 000 99 0 44444444444444 4 1111111111 7 4 7 7 4 7 0 7 99 11111111111 0 7 7 4 3 3 7 7 9 1 0 7 7
consensus : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAA-TTTT-ATTTTGA-TGGGTG-GTCGTATTTTCATCT-----TTTTTTTTTTTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTCAA-A--CGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGC----ANAGGGCACTAACTGGATTTCAAA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-ACCTAC-ACT------AT---------AAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--AC-C-TAAAAAAAA-T-AAG---T--AAAAA-TGAANATACGACCACCCATCNAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGAT-----AT---AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAG--G---GN--CTGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( family-6911 ) : CTATTCCAGAAATAACCAAACGGGGGTAATGCGTATCAACCGAA-TTTT-ATTTTGAATGGGTG-GTCGTATTTTCATTT-----TTTTNTTTTTTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACGGTAGCCTAAGGTCTTTAAAACTTCAA-A--CAAATCC-TCACTACNAACAAG-AACT----AT--CCA-----NAGC----ANAGGGCACTGACTGGATTTCAAA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTTAATAAAACC-TGA--ANT-ACCTAC-ACT------AT---------AAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--AC-C-TAAAAAAAAAT-AAAA--T--AAAAA-TGAAAATACGACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGA------AT---AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAG--C---GG--CTGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
gi|1 : CTATTCCAGAA-TAACCAAACGGGGGTAATGC-TATCAACCAA---TTT-ATTTTGAATGGGTG-GTCGTATTTTCATCT-----TTTTTTTTTTTTTTTTTTAGGT---GT---TTG--TTCC-GTAGTAGCCTAAGGTTTTTAAA-CTTCAA-AAACAAATCC-TCGCTACTAACAA---ACT----AT--CTA-----AAAT----ATAGGACACTAACTGGATTTCAAA-TCTC-GAAAAAC--GTGCCGTACTTTTTCGAAA--G-ATTTA-CAAA-AACACTCAG-GCAGCAATAA-AATTATATT-T-CAAATTCAATA-CCAT-ACGATGGATACAAAATATTT-AATTCAATAAAACC-TGA--ATT-ACCTAC-ACT------AT---------AAAAATATA-ATA--TTT--AA-AACCC-AACCACGG--AC-CTTAAAAAAAAAT-AAAGGTT--AAAAA-TAAAAATACGACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGT-----AT---AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAAGGA--CTGCAAGTAA-G-GCTTTTGCTA-TAGGCATTC-TCACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-GGCCGAG-TTGAGCCG-TGTTGCATT-CT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA--------------------TGTAAGTAA-GAAACTTTGCTA-ATGGCATTC-GCGCGTT-GTTTTT-CTCT-CAAGGTCGGTTCATATGGCAGATATTTTGCATCGAAATCGTCGGGGACGT-CGGCAAG-TTCTGCCGGTGTTGTGTTACT-CGCCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATT
gi|11 : -AC-ATGG-CATAAAATAAT--AATTACAGAAAACC-TGA--AATGACCAACCACC------CTTGACCAAAAAAAAAAAAA-ATA--TTTTAAA-AACCC-AACCATGG--AC-C-TAAAAAA-----------T--AAA---TGAATATACGACAGCCCATCTAAA--AAAAATCGGTTGCC----CCC----------C----TCCCCTTTTGGTT-ATTTCTGGA------AT---AGCCg
gi|12 : TTTAATA-CCAT-----CGG-CATAAAATAAT--AATTACAGAAAAC--TGATGACC-AACCAC-CCTTGACAAAA---------AAAAAAAAA-ATA--TTT--AA-AACCC-AACCATGGCCAC-C-TAAAAAA-----------T--AA----TGAATATAC-ACAGCCCATCTTAAA-AAAAT-CGGTTG-------------------CCCCCCTCCCTTTTGGTTAATTTCT-GA------AT---AGC
gi|13 : TTCC-ACAGTAG-----GGTGTTCAAAACTTCAA-A--CGATTCC-TCACTACAAACAAG-AACT----TG--CCA-----CAGC----AAAGGACACTAACTAGATTTCAAA-TCTCGGAAAA-CGTGTGCCA-ACCTTTTCGAAA--A-AATT
gi|14 : -ATT--TTT--AA-ATCCC-AACCACGG--AC-C-TAAAACAAA---------T--AAA---TGAATATACGACTACCCATCTAAAA-AAAAT-CGGTTGCC----GCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA------AT---AGC
gi|15 : t-ACCTA----T------TT---------AAAAATATATATG--TTT--AA-A-CCC-AACCATGG--AC-C-TAAAATAAA-T-AAGA--T--AAAAAATGAAAACACCACCACCCATCAAAAT-AAAATTCGGTT
gi|16 : gcACTAACTGGATTTCAAA-TCTC-GAAAA-C--GCGCTG-ACCTTTTCGAAAC-A-ATTCA-CAA--AACA-ACAGAGCAGCATTAA-AATGAT-CTA---AAATTTAGTA
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGAT-----AT---AGCCATA--A-TAAAATATCGTTTTGTA--------------A
gi|18 : AACAAG-AACT----CG--CCA-----CAGC----AAA-GGCACTAACTGGAta
gi|19 : ttctacagtagggtgtttAGGACACTGACTGGATTTCAAA-TTTC-GAAAA-C--GT
gi|2 : caagaT-ATTTAC-AC-------AT--------------TATA-TTA--TTT--AA-ACCCCGAACCAGGG--AC-C-TAAAAAAAT-T-AAGA--T--AAAAA-TGAAAATGCCACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAGCCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT-CAG--G---GT--CTGTAAGTAG-CCGCTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CT-CAAGGT--GCCCGTATGGCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCGTTGTT-CATTCCTATTCCAT----------G-TTGATGATGTC-GAGC-ATCGGCGGAGTTATCTA-CTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|20 : tgcaccGAATAATG-TTGATGATGTCGGAGC-ATCGACct
gi|3 : -ACCTAT--TT------A----------AAAAATATT-A-A--TTT--AA-AACCC-AACCACGG--AC-C-TAAAAAAAAATTAAGA--TTAAAAAA-TGAAACTGCCACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTCGGTC-AT-------------GT---AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAG------GGTCCTGCAAGTAAAGAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTCTTGT-CT-CAAGGT--GCCCCTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAAT
gi|4 : accatgcAAACAACACA----GCAGCAATAA-AATTATATTGT-CAAATTCAATATCCAT-AC-ATGA-CACAAAATGTTT-ATTTTAATAAAA-----A--AAT-ATATAT-ACT----------------------------TA--TTT--AA-AAC-------ACG---AC-C-TAAAAAA-----------T--GAAAA-TGAAAATACGACCACTCATCAAAAT-AAAATTCGGTTGATCAATACG----------CATTACCCCCGTTT-----ATTTCTGGAT-----AT---AGCCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCTTCAG--G---GA--CTACAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTGGTTCG-TATGGC--AGTTATTTAGCAG-----------CAAAATCGTCGGGCACAT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTG
gi|5 : aCTATTCCAGAAATAACCAAACGGG--TAATGCGTATCAACCGAA-TTTTTATTTTGA-TGGGTG-GTCGTATTTTCATTT-----CTATATTTTTTTTTTT--AGGTCC-GTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTCAA-A--CAAATCCCTCGCTACCACCAAG-AATT----ATATCCA-----AAATTAATATAGGGAACTGACTGGATTGCAAA-TCTC-GAAAA-C--GTGCCA-ACCTTTTCGAAAATA-ATTTA-CAAACAACACACAG-CC--CAATAA-AATTATATTAT-CAAATTAAATATCCAT-AC-ATGG-CA-AAAATATTT-AATTTAATAAAACC-TTA--ATT-ACCTAC-
gi|6 : atattttatgtagggtCTATTCCAGAAATA-CCAA-CGGGG-TAATGCGTATCAACCGAATTTTT-ATTTTGA-----TGTGTCGTATTTTCATCTTTTTATTTTTTTTTTTTTTTTTTAGGTCCGGT---TGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAACTTCAA-A---AAAT-C-TCTCTACCACCAAGAAACTATAGAT--CCAAAAATTAAT----ATAGGGAACTGACTGGATTTC-AA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--AGATTTATCAAACAACACA----GCAGCAATAAGAATTATATTATGCAAATTCAATATCCATAAC-ATGG-CA-AAAATATTTCAATTTAAT-AAACC-T----ATT-ACCTAC-
gi|7 : attttaattagggACTTCAACA--CGA-TCC-TCACTACAAACAAG-AACG--------CCA-----CAGC----AAAGGGCTCTAAAAGGATTTCAAAATCTC-GGAAA-C--GTGCCG-A-CTTTTCGAAT--T-TTTTT-TTAA-AACAC---G-GCAGC--------------------------ATACCCAT-AC-AT-G-CACAAA----TT-AATT--ACAAAACTGTAA--GAC-ACC-AG-GCC------AT---------GAAAG-AAA-ATATTTTT--AATATCCC-AACCACGG--ACTC-T--AAAAAAAT--------------A-TGAATATA-GAC--CCCATCTAAATAAAAAATCGGTTGCC----GCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCT-GA------AT---AGCC
gi|8 : gtGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATT------------GT---AACCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCTTCAG--G---GT--CTGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTA
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAAGGA--CTGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTA
Alignments
lowQualScore : 22 2 1 555555555 1 111 222 1 11 3333333333333333 2222 1 22222 111 1111111 44444444444444 111 555555555 11 11111 1111111111 11111111 22222222222222 11111111111111 1 22222222222
lowQualScore : 7 7 7 00 6 7 6 3 6 6 6 000000000 3 888 333 6 0 2 0 3 11 8 6 8 1 1 6 8888888888888888 1 5 5 5 77 6 0000 8 0 22222 6 3 555 1 9 5 5 5 8 5 5 77 2222222 1 4 777 22222222222222 6 2 4 66 66 4 4 4 0 66 000 66 444444444 8 1 3 2 1 11 2 11111 9999999999 3 0 4 5 88888888 66 5 99999999999999 66666666666666 3 5 5 1 5 77 1 5 9 5 77 77777777777 4 5 5 1 4 6 5 2 1 1 5 5 6
lowQualScore : . . . .. . . . . . . . ......... . ... ... . . . . . .. . . . . . . ................ . . . . .. . .... . . ..... . . ... . . . . . . . . .. ....... . . ... .............. . . . .. .. . . . . .. ... .. ......... . . . . . .. . ..... .......... . . . . ........ .. . .............. .............. . . . . . .. . . . . .. ........... . . . . . . . . . . . . .
lowQualScore : 3 3 3 00 7 3 7 3 7 7 7 000000000 3 333 333 7 0 5 2 2 00 0 0 0 4 0 7 3333333333333333 0 7 7 7 99 7 3333 0 8 33333 7 2 555 7 8 7 7 7 9 1 7 99 0000000 0 0 000 55555555555555 6 8 4 11 11 4 9 4 9 11 999 11 999999999 9 0 9 9 0 88 6 11111 4444444444 4 6 0 6 11111111 99 0 44444444444444 11111111111111 0 7 7 4 7 11 4 7 0 7 99 11111111111 0 7 7 4 3 6 7 7 4 1 0 7 7
consensus : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATCTTTT-------T-TTT-TTTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGTCGG-CGAGTT-GAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( family-6911 ) : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTT-ATTTTGA-TGGGTGGTCGTATTTTCATCTTTT-------TTTTT-TTTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGTCGG-CGAGTT-GAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
gi|1 : CTATTCCAGAA-TAACCAAACGGGGGTAATGC-TATCAACCAA--TTT-ATTTTGAATGGGTGGTCGTATTTTCATCTTTT-------TTTTTT-TTTTTTTTTAGGT---GT---TTG--TTCC-GTAGTAGCCTAAGGTTTTT-AAACTTCAAAA-ACAAATCC-TCGCTACTAACA---AACT----AT--CTA-----AAATATAGGACACTAACTGGATTTCAAA-TCTC-GAAAAAC--GTGCCGTACTTTTTCGAAA--G-ATTTA-CAAA-AACACTCAG-GCAGCAATAA-AATTATATT-T-CAAATTCAATA-CCAT-ACGATGGATACAAAATATTT-AATTCAATAAAACC-TGA--ATT-AC---CTACACT-------ATAAAAATATA-ATA--TTT--AA-AACCC-AACCACGG--ACCTTAAAAAAAAA--TAAAGGTTAAAAA-TAAAAATACGACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGTAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAA-----GGAC-TGCAAGTAA-G-GCTTTTGCTA-TAGGCATTC-TCACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGTGGC-CGAGTT-GAGCCG-TGTTGCATT-CT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA------------------------TGTAAGTAA-GAAACTTTGCTA-ATGGCATTC-GCGCGTT-GTTTTT-CTCT-CAAGGTCGGTTCATATGGCAGATATTTTGCATCGAAATCGTCGGGGACGTCGG-CAAGTT-CTGCCGGTGTTGTGTTACT-CGCCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATT
gi|11 : -AC-ATGG-CATAAAATA-AT-AATTACAGAAAACC-TGA--AATGACCAACCACCCTTGACCAAAAAAAAAAAAA-ATA--TTTTAAA-AACCC-AACCATGG--ACCT----AAAAAA--T---------AAA-TGAATATACGACAGCCCATCTAAA--AAAAATCGGTTG----CCCCC----------C----TCCCCTTTTGGTT-ATTTCTGGA-AT--------AGCCg
gi|12 : TTTAATA-CCAT-----CGG-CATAAAATAAT--AATTACAGAAAAC--TGATGACC-AA---CCACCCTTGACAA-AAAAAAAAAAA-ATA--TTT--AA-AACCC-AACCATGGCCACCT----AAAAAA--T----------AA-TGAATATAC-ACAGCCCATCTTAA--AAAAATCGGTT---------G----------CCCCCCTCCCTTTTGGTTAATTTCTGAATA
gi|13 : TTCC-ACAGTAG-----GGTGTTCAAAACTTC--AA-ACGATTCC-TCACTACAAACAAG-AACT----TG--CCA-----CAGCAAAGGACACTAACTAGATTTCAAA-TCTCGG-AAAACGTGTGCCA-ACCTTTTCGAAA--A-AATTgc
gi|14 : -ATT--TTT--AA-ATCCC-AACCACGG--ACCT--AAAACAAA--T---------AAA-TGAATATACGACTACCCATCTAAA--AAAAATCGGTTG----CCGCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA-AT--------AGC
gi|15 : t-AC---CTA---T-------TTAAAAATATATATG--TTT--AA-A-CCC-AACCATGG--ACCT--AAAATAAA--TAAGA--TAAAAAATGAAAACACCACCACCCATCAAAAT-AAAATTCGGTT
gi|16 : gcACTAACTGGATTTCAAA-TCTC-G-AAAAC--GCGCTG-ACCTTTTCGAAAC-A-ATTCA-CAA--AACA-ACAGAGCAGCATTAA-AATGAT-CTA---AAATTTAGTA
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCATA--A-TAAAATATCGTTTTGTA--------------A
gi|18 : AACAAG-AACT----CG--CCA-----CAGCAAA-GGCACTAACTGGAta
gi|19 : ttctacagtagggtgtttAGGACACTGACTGGATTTCAAA-TTTC-G-AAAAC--GT
gi|2 : caagaT-AT---TTACAC--------AT-----TATA-TTA--TTT--AA-ACCCCGAACCAGGG--ACCT--AAAAAAAT--TAAGA--TAAAAA-TGAAAATGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAGCCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT------CAG-----GGTC-TGTAAGTAG-CCGCTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CT-CAAGGT--GCCCGTATGGCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCGTTGTT-CATTCCTATTCCATGTTGA-----------TGATGTCG-AGC-ATCGGCGGAGTTATCTAC-TTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|20 : tgcaccGAATAATG-TTGATGATGTCGGAGC-ATCGACct
gi|3 : -AC---CTAT-TT-------A-AAAAATATT-A-A--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAAATTAAGAT-TAAAAAATGAAACTGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTCGGTC-AT--------GT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTCCTGCAAGTAAAGAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTCTTGT-CT-CAAGGT--GCCCCTATGGCAG-----------CAAAATCGTCGGGCACGTCGG-CGAGTT-GAGCCGTTGTTCCATTCCT-CACCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAAT
gi|4 : accatgcAAACAACACA----GCAGCAATAA-AATTATATTGT-CAAATTCAATATCCAT-AC-ATGA-CACAAAATGTTT-ATTTTAATAAAA-----A--AAT-AT---ATATACT--------------------TA--TTT--AA-AAC----AC----G--ACCT--AAAAAA-----------TGAAAA-TGAAAATACGACCACTCATCAAAAT-AAAATTCGGTTGATCAATACG----------CATTACCCCCGT----TT-ATTTCTGGATAT--------AGCCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGAC-TACAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTGGTTCG-TATGGC--AGTTATTTAGCAG-----------CAAAATCGTCGGGCACATCGG-CGAGTT-GAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTG
gi|5 : aCTATTCCAGAAATAACCAAACGGG--TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCAT--TTC-------TATAT-TTTTTTTTTTAGGTCC-GTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACAAATCCCTCGCTACCACCAAG-AATT----ATATCCAAAAT-TAATATAGGGAACTGACTGGATTGCAAA-TCTC-G-AAAAC--GTGCCA-ACCTTTTCGAAAATA-ATTTA-CAAACAACACACAG-CC--CAATAA-AATTATATTAT-CAAATTAAATATCCAT-AC-ATGG-CA-AAAATATTT-AATTTAATAAAACC-TTA--ATT-AC---CTAC
gi|6 : atattttatgtagggtCTATTCCAGAAATA-CCAA-CGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TG--TG-TCGTATTTTCATCTTTTTATTTTT--TTT-TTTTTTTTTTAGGTCCGGT---TGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAACTTC--AA-A-AAAT-C-TCTCTACCACCAAGAAACTATAGAT--CCAAAAATTAATATAGGGAACTGACTGGATTTC-AA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--AGATTTATCAAACAACACA----GCAGCAATAAGAATTATATTATGCAAATTCAATATCCATAAC-ATGG-CA-AAAATATTTCAATTTAAT-AAACC-T----ATT-AC---CTAC
gi|7 : attttaattagggACTTC--AACACGA-TCC-TCACTACAAACAAG-AACG--------CCA-----CAGCAAAGGGCTCTAAAAGGATTTCAAAATCTC-G-GAAAC--GTGCCG-A-CTTTTCGAAT--T-TTTTT-TTAA-AACAC---G-GCAGC--------------------------ATACCCAT-AC-AT-G-CACAAA----TT-AATT--ACAAAACTGTAA--GAC-AC---C-AGGCC-------ATGAAAG-AAA-ATATTTTT--AATATCCC-AACCACGG--ACTC--TAAAAAAA--T-----------A-TGAATATA-GAC--CCCATCTAAATAAAAAATCGGTTG----CCGCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCTGAATA
gi|8 : gtGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATT-------GT--------AACCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CAAAATCGTCGGGCACGTCGG-CGAGTT-GAGCCGTTGTTCCATTCCT-CACCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAgcc
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAAATCAAGGAC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGTCGG-CGAGTT-GAGCCGTTGTTGCATTACT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTA
Alignments
lowQualScore : 22 1 4444444 11 111 222 1 11 3333333333333333 2222 1 22222 111 1111111 44444444444444 111 444444444 11 11111 1111111111 11111111 22222222222222 11111111111111 1 22222222222
lowQualScore : 7 7 7 00 6 7 3 6 6 5555555 88 888 333 6 0 2 0 3 11 8 6 8 1 1 6 8888888888888888 1 5 5 5 77 6 0000 8 0 22222 6 3 555 1 9 5 5 5 8 5 5 77 2222222 1 4 777 22222222222222 6 2 4 66 66 4 4 4 0 66 000 66 999999999 8 1 3 2 1 11 1 11111 9999999999 3 0 4 5 88888888 66 5 99999999999999 66666666666666 3 5 5 1 5 77 1 5 9 5 77 77777777777 4 5 5 1 4 6 5 2 4 1 5 5 6
lowQualScore : . . . .. . . . . . ....... .. ... ... . . . . . .. . . . . . . ................ . . . . .. . .... . . ..... . . ... . . . . . . . . .. ....... . . ... .............. . . . .. .. . . . . .. ... .. ......... . . . . . .. . ..... .......... . . . . ........ .. . .............. .............. . . . . . .. . . . . .. ........... . . . . . . . . . . . . .
lowQualScore : 3 3 3 00 7 3 3 7 7 0000000 33 333 333 7 0 5 2 2 00 0 0 0 4 0 7 3333333333333333 0 7 7 7 99 7 3333 0 8 33333 7 2 555 7 8 7 7 7 9 1 7 99 0000000 0 0 000 55555555555555 6 8 4 11 11 4 9 4 9 11 999 11 666666666 9 0 9 9 0 88 0 11111 4444444444 4 6 0 6 11111111 99 0 44444444444444 11111111111111 0 7 7 4 7 11 4 7 0 7 99 11111111111 0 7 7 4 3 6 7 7 9 1 0 7 7
consensus : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( family-6911 ) : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
gi|1 : CTATTCCAGAA-TAACCAAACGGGGGTAATGC-TATCAACCAA---TTTATTTTGAATGGGTGGTCGTATTTTCATC------TTTTTTTTTTT-TTTTTTTTAGGT---GT---TTG--TTCC-GTAGTAGCCTAAGGTTTTT-AAACTTCAAAA-ACAAATCC-TCGCTACTAACA---AACT----AT--CTA-----AAATATAGGACACTAACTGGATTTCAAA-TCTC-GAAAAAC--GTGCCGTACTTTTTCGAAA--G-ATTTA-CAAA-AACACTCAG-GCAGCAATAA-AATTATATT-T-CAAATTCAATA-CCAT-ACGATGGATACAAAATATTT-AATTCAATAAAACC-TGA--ATT-AC---CTACACT-------ATAAAAATATA-ATA--TTT--AA-AACCC-AACCACGG--ACCTTAAAAAAAAA--TAAAGGTTAAAAA-TAAAAATACGACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGTAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAA-----GGAC-TGCAAGTAA-G-GCTTTTGCTA-TAGGCATTC-TCACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-GGCCGAG-TTGAGCCG-TGTTGCATT-CT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA------------------------TGTAAGTAA-GAAACTTTGCTA-ATGGCATTC-GCGCGTT-GTTTTT-CTCT-CAAGGTCGGTTCATATGGCAGATATTTTGCATCGAAATCGTCGGGGACGT-CGGCAAG-TTCTGCCGGTGTTGTGTTACT-CGCCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATT
gi|11 : -AC-ATGG-CATAAAATA-AT-AATTACAGAAAACC-TGA--AATGACCAACCACCCTTGACCAAAAAAAAAAAAA-ATA--TTTTAAA-AACCC-AACCATGG--ACCT----AAAAAA--T---------AAA-TGAATATACGACAGCCCATCTAAA--AAAAATCGGTTG----CCCCC----------C----TCCCCTTTTGGTT-ATTTCTGGA-AT--------AGCCg
gi|12 : TTTAATA-CCAT-----CGG-CATAAAATAAT--AATTACAGAAAAC--TGATGACC-AA---CCACCCTTGACAA-AAAAAAAAAAA-ATA--TTT--AA-AACCC-AACCATGGCCACCT----AAAAAA--T----------AA-TGAATATAC-ACAGCCCATCTTAA--AAAAATCGGTT---------G----------CCCCCCTCCCTTTTGGTTAATTTCTGAATA
gi|13 : TTCC-ACAGTAG-----GGTGTTCAAAACTTC--AA-ACGATTCC-TCACTACAAACAAG-AACT----TG--CCA-----CAGCAAAGGACACTAACTAGATTTCAAA-TCTCGG-AAAACGTGTGCCA-ACCTTTTCGAAA--A-AATTgc
gi|14 : -ATT--TTT--AA-ATCCC-AACCACGG--ACCT--AAAACAAA--TAA---------A-TGAATATACGACTACCCATCTAAA--AAAAATCGGTTG----CCGCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA-AT--------AGC
gi|15 : t-AC---CTA---T-------TTAAAAATATATATG--TTT--AA-A-CCC-AACCATGG--ACCT--AAAATAAA--TAAGA--TAAAAAATGAAAACACCACCACCCATCAAAAT-AAAATTCGGTT
gi|16 : gcACTAACTGGATTTCAAA-TCTC-G-AAAAC--GCGCTG-ACCTTTTCGAAAC-A-ATTCA-CAA--AACA-ACAGAGCAGCATTAA-AATGAT-CTA---AAATTTAGTA
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCATA--A-TAAAATATCGTTTTGTA--------------A
gi|18 : AACAAG-AACT----CG--CCA-----CAGCAAA-GGCACTAACTGGAta
gi|19 : ttctacagtagggtgtttAGGACACTGACTGGATTTCAAA-TTTC-G-AAAAC--GT
gi|2 : caagaT-AT---TTACAC--------AT-----TATA-TTA--TTT--AA-ACCCCGAACCAGGG--ACCT--AAAAAAAT--TAAGA--TAAAAA-TGAAAATGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAGCCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT------CAG-----GGTC-TGTAAGTAG-CCGCTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CT-CAAGGT--GCCCGTATGGCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCGTTGTT-CATTCCTATTCCAT----------G-TTGATGATGTC-GAGC-ATCGGCGGAGTTATCTA-CTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|20 : tgcaccGAATAATG-TTGATGATGTCGGAGC-ATCGACct
gi|3 : -AC---CTAT-TT-------A-AAAAATATT-A-A--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAAATTAAGAT-TAAAAAATGAAACTGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTCGGTC-AT--------GT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTCCTGCAAGTAAAGAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTCTTGT-CT-CAAGGT--GCCCCTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAAT
gi|4 : accatgcAAACAACACA----GCAGCAATAA-AATTATATTGT-CAAATTCAATATCCAT-AC-ATGA-CACAAAATGTTT-ATTTTAATAAAA-----A--AAT-AT---ATATACT--------------------TA--TTT--AA-AAC----AC----G--ACCT--AAAAAA-----------TGAAAA-TGAAAATACGACCACTCATCAAAAT-AAAATTCGGTTGATCAATACG----------CATTACCCCCGT----TT-ATTTCTGGATAT--------AGCCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGAC-TACAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTGGTTCG-TATGGC--AGTTATTTAGCAG-----------CAAAATCGTCGGGCACAT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTG
gi|5 : aCTATTCCAGAAATAACCAAACGGG--TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCAT-------TTCTATATT--TTTTTTTTTAGGTCC-GTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACAAATCCCTCGCTACCACCAAG-AATT----ATATCCAAAAT-TAATATAGGGAACTGACTGGATTGCAAA-TCTC-G-AAAAC--GTGCCA-ACCTTTTCGAAAATA-ATTTA-CAAACAACACACAG-CC--CAATAA-AATTATATTAT-CAAATTAAATATCCAT-AC-ATGG-CA-AAAATATTT-AATTTAATAAAACC-TTA--ATT-AC---CTAC
gi|6 : atattttatgtagggtCTATTCCAGAAATA-CCAA-CGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-T--GT-GTCGTATTTTCATCTTTTTATTTTTTTTT--TTTTTTTTTAGGTCCGGT---TGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAACTTC--AA-A-AAAT-C-TCTCTACCACCAAGAAACTATAGAT--CCAAAAATTAATATAGGGAACTGACTGGATTTC-AA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--AGATTTATCAAACAACACA----GCAGCAATAAGAATTATATTATGCAAATTCAATATCCATAAC-ATGG-CA-AAAATATTTCAATTTAAT-AAACC-T----ATT-AC---CTAC
gi|7 : attttaattagggACTTC--AACACGA-TCC-TCACTACAAACAAG-AACG--------CCA-----CAGCAAAGGGCTCTAAAAGGATTTCAAAATCTC-G-GAAAC--GTGCCG-A-CTTTTCGAAT--T-TTTTT-TTAA-AACAC---G-GCAGC--------------------------ATACCCAT-AC-AT-G-CACAAA----TT-AATT--ACAAAACTGTAA--GAC-AC---C-AGGCC-------ATGAAAG-AAA-ATATTTTT--AATATCCC-AACCACGG--ACTC--TAAAAAAA--T-----------A-TGAATATA-GAC--CCCATCTAAATAAAAAATCGGTTG----CCGCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCTGAATA
gi|8 : gtGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATT-------GT--------AACCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAgcc
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAAATCAAGGAC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTA
Alignments
lowQualScore : 22 1 4444444 11 111 222 1 11 3333333333333333 2222 1 22222 111 1111111 44444444444444 111 444444444 11 11111 1111111111 11111111 22222222222222 11111111111111 1 22222222222
lowQualScore : 7 7 7 00 6 7 3 6 6 5555555 88 888 333 6 0 2 0 3 11 8 6 8 1 1 6 8888888888888888 1 5 5 5 77 6 0000 8 0 22222 6 3 555 1 9 5 5 5 8 5 5 77 2222222 1 4 777 22222222222222 6 2 4 66 66 4 4 4 0 66 000 66 999999999 8 1 3 2 1 11 1 11111 9999999999 3 0 4 5 88888888 66 5 99999999999999 66666666666666 3 5 5 1 5 77 1 5 9 5 77 77777777777 4 5 5 1 4 6 5 2 4 1 5 5 6
lowQualScore : . . . .. . . . . . ....... .. ... ... . . . . . .. . . . . . . ................ . . . . .. . .... . . ..... . . ... . . . . . . . . .. ....... . . ... .............. . . . .. .. . . . . .. ... .. ......... . . . . . .. . ..... .......... . . . . ........ .. . .............. .............. . . . . . .. . . . . .. ........... . . . . . . . . . . . . .
lowQualScore : 3 3 3 00 7 3 3 7 7 0000000 33 333 333 7 0 5 2 2 00 0 0 0 4 0 7 3333333333333333 0 7 7 7 99 7 3333 0 8 33333 7 2 555 7 8 7 7 7 9 1 7 99 0000000 0 0 000 55555555555555 6 8 4 11 11 4 9 4 9 11 999 11 666666666 9 0 9 9 0 88 0 11111 4444444444 4 6 0 6 11111111 99 0 44444444444444 11111111111111 0 7 7 4 7 11 4 7 0 7 99 11111111111 0 7 7 4 3 6 7 7 9 1 0 7 7
consensus : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( family-6911 ) : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
gi|1 : CTATTCCAGAA-TAACCAAACGGGGGTAATGC-TATCAACCAA---TTTATTTTGAATGGGTGGTCGTATTTTCATC------TTTTTTTTTTT-TTTTTTTTAGGT---GT---TTG--TTCC-GTAGTAGCCTAAGGTTTTT-AAACTTCAAAA-ACAAATCC-TCGCTACTAACA---AACT----AT--CTA-----AAATATAGGACACTAACTGGATTTCAAA-TCTC-GAAAAAC--GTGCCGTACTTTTTCGAAA--G-ATTTA-CAAA-AACACTCAG-GCAGCAATAA-AATTATATT-T-CAAATTCAATA-CCAT-ACGATGGATACAAAATATTT-AATTCAATAAAACC-TGA--ATT-AC---CTACACT-------ATAAAAATATA-ATA--TTT--AA-AACCC-AACCACGG--ACCTTAAAAAAAAA--TAAAGGTTAAAAA-TAAAAATACGACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGTAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAA-----GGAC-TGCAAGTAA-G-GCTTTTGCTA-TAGGCATTC-TCACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-GGCCGAG-TTGAGCCG-TGTTGCATT-CT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA------------------------TGTAAGTAA-GAAACTTTGCTA-ATGGCATTC-GCGCGTT-GTTTTT-CTCT-CAAGGTCGGTTCATATGGCAGATATTTTGCATCGAAATCGTCGGGGACGT-CGGCAAG-TTCTGCCGGTGTTGTGTTACT-CGCCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATT
gi|11 : -AC-ATGG-CATAAAATA-AT-AATTACAGAAAACC-TGA--AATGACCAACCACCCTTGACCAAAAAAAAAAAAA-ATA--TTTTAAA-AACCC-AACCATGG--ACCT----AAAAAA--T---------AAA-TGAATATACGACAGCCCATCTAAA--AAAAATCGGTTG----CCCCC----------C----TCCCCTTTTGGTT-ATTTCTGGA-AT--------AGCCg
gi|12 : TTTAATA-CCAT-----CGG-CATAAAATAAT--AATTACAGAAAAC--TGATGACC-AA---CCACCCTTGACAA-AAAAAAAAAAA-ATA--TTT--AA-AACCC-AACCATGGCCACCT----AAAAAA--T----------AA-TGAATATAC-ACAGCCCATCTTAA--AAAAATCGGTT---------G----------CCCCCCTCCCTTTTGGTTAATTTCTGAATA
gi|13 : TTCC-ACAGTAG-----GGTGTTCAAAACTTC--AA-ACGATTCC-TCACTACAAACAAG-AACT----TG--CCA-----CAGCAAAGGACACTAACTAGATTTCAAA-TCTCGG-AAAACGTGTGCCA-ACCTTTTCGAAA--A-AATTgc
gi|14 : -ATT--TTT--AA-ATCCC-AACCACGG--ACCT--AAAACAAA--TAA---------A-TGAATATACGACTACCCATCTAAA--AAAAATCGGTTG----CCGCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA-AT--------AGC
gi|15 : t-AC---CTA---T-------TTAAAAATATATATG--TTT--AA-A-CCC-AACCATGG--ACCT--AAAATAAA--TAAGA--TAAAAAATGAAAACACCACCACCCATCAAAAT-AAAATTCGGTT
gi|16 : gcACTAACTGGATTTCAAA-TCTC-G-AAAAC--GCGCTG-ACCTTTTCGAAAC-A-ATTCA-CAA--AACA-ACAGAGCAGCATTAA-AATGAT-CTA---AAATTTAGTA
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCATA--A-TAAAATATCGTTTTGTA--------------A
gi|18 : AACAAG-AACT----CG--CCA-----CAGCAAA-GGCACTAACTGGAta
gi|19 : ttctacagtagggtgtttAGGACACTGACTGGATTTCAAA-TTTC-G-AAAAC--GT
gi|2 : caagaT-AT---TTACAC--------AT-----TATA-TTA--TTT--AA-ACCCCGAACCAGGG--ACCT--AAAAAAAT--TAAGA--TAAAAA-TGAAAATGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAGCCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT------CAG-----GGTC-TGTAAGTAG-CCGCTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CT-CAAGGT--GCCCGTATGGCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCGTTGTT-CATTCCTATTCCAT----------G-TTGATGATGTC-GAGC-ATCGGCGGAGTTATCTA-CTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|20 : tgcaccGAATAATG-TTGATGATGTCGGAGC-ATCGACct
gi|3 : -AC---CTAT-TT-------A-AAAAATATT-A-A--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAAATTAAGAT-TAAAAAATGAAACTGCCACCACCCATCAAAAT-AAAATTCGGTTG----ATACG----------CATTACCCCCGTTCGGTC-AT--------GT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTCCTGCAAGTAAAGAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTCTTGT-CT-CAAGGT--GCCCCTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAAT
gi|4 : accatgcAAACAACACA----GCAGCAATAA-AATTATATTGT-CAAATTCAATATCCAT-AC-ATGA-CACAAAATGTTT-ATTTTAATAAAA-----A--AAT-AT---ATATACT--------------------TA--TTT--AA-AAC----AC----G--ACCT--AAAAAA-----------TGAAAA-TGAAAATACGACCACTCATCAAAAT-AAAATTCGGTTGATCAATACG----------CATTACCCCCGT----TT-ATTTCTGGATAT--------AGCCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGAC-TACAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTGGTTCG-TATGGC--AGTTATTTAGCAG-----------CAAAATCGTCGGGCACAT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTG
gi|5 : aCTATTCCAGAAATAACCAAACGGG--TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCAT-------TTCTATATT--TTTTTTTTTAGGTCC-GTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACAAATCCCTCGCTACCACCAAG-AATT----ATATCCAAAAT-TAATATAGGGAACTGACTGGATTGCAAA-TCTC-G-AAAAC--GTGCCA-ACCTTTTCGAAAATA-ATTTA-CAAACAACACACAG-CC--CAATAA-AATTATATTAT-CAAATTAAATATCCAT-AC-ATGG-CA-AAAATATTT-AATTTAATAAAACC-TTA--ATT-AC---CTAC
gi|6 : atattttatgtagggtCTATTCCAGAAATA-CCAA-CGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-T--GT-GTCGTATTTTCATCTTTTTATTTTTTTTT--TTTTTTTTTAGGTCCGGT---TGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAACTTC--AA-A-AAAT-C-TCTCTACCACCAAGAAACTATAGAT--CCAAAAATTAATATAGGGAACTGACTGGATTTC-AA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--AGATTTATCAAACAACACA----GCAGCAATAAGAATTATATTATGCAAATTCAATATCCATAAC-ATGG-CA-AAAATATTTCAATTTAAT-AAACC-T----ATT-AC---CTAC
gi|7 : attttaattagggACTTC--AACACGA-TCC-TCACTACAAACAAG-AACG--------CCA-----CAGCAAAGGGCTCTAAAAGGATTTCAAAATCTC-G-GAAAC--GTGCCG-A-CTTTTCGAAT--T-TTTTT-TTAA-AACAC---G-GCAGC--------------------------ATACCCAT-AC-AT-G-CACAAA----TT-AATT--ACAAAACTGTAA--GAC-AC---C-AGGCC-------ATGAAAG-AAA-ATATTTTT--AATATCCC-AACCACGG--ACTC--TAAAAAAA--T-----------A-TGAATATA-GAC--CCCATCTAAATAAAAAATCGGTTG----CCGCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCTGAATA
gi|8 : gtGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATT-------GT--------AACCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAgcc
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAAATCAAGGAC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTA
blockSeqs : A A A G G A . G G CTTTTTA . CCG GGT C A C A . C T C A A A ATAGATCCAAAAAT A A G . GT . ATA T C ACAGA G A ATG T T A . . T A C AC TGATG A G CAA CCCTTGACCAAAAA A A T TT TA T A G CC A AT AAGATTAA A T G A T TA A ATCAA TCCCTCCCCC C A T TACATTTT TA A GGAAGGAGGAGGGG TCAAATCAA T C A A A TT G T T . CG ATATTTTGCAT G A T G G A A G G T T A G
blockSeqs : A . . . G A . . . . . CC . C . C A . . A . G C . ATATCCAAAAT A . . . . . CA . C ACAG . A GT T T . . . T T . AC TGTAA C . . CCCTTGACAAAAA A A . . . . A . . A . AAGATAA A T G A T T A C . G . T . . . . TCAG T . . C . C A . T . . . A . . T C C . T T T . . G
blockSeqs : . . A . . A . T C . TGCCA T . . . . . AG . C A . A AT C T . . . C T . TA CTGA A . . GGCCATG T T . . . . T . . A . AAGATAA . T C T T T A C . A . T . . . . TCAG A . . A . T A . . . . . A . . T G C . A T T . . G
blockSeqs : . . . . A A . CGCCA T . . . . . A . . A . . A A C . . . C T . TA CTTA T . . CACAT T T . . . . C . . A . TGA . A C C A T T A . A . T . . . . TCAG T . . A . T G . . . . . A . . T C A . G T C . . G
blockSeqs : . CCA A . . . . . T . G . . . C . . . . . . . TA CT T . . TTTAA T T . . . . A . . A . AA . A C C A T T A . A . T . . . . CAG A . . A . T A . . . . . G . . T G C . A . T . . .
blockSeqs : . . . . . . . . . . . . A A . . TTTA . A . . . . A . . T . . . A G C A . T C . C . . . . . . . . . . A . T A . . . . . . . . T . A . A . C . .
blockSeqs : . . TACT . . . . . . T . . . . . . A G C A . T A . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . T . . T . A . . . . .
blockSeqs : . . . .
blockSeqCons : ** A**** AT* CTA**** TCTTA********* A** ATA****** TCAG**********
originalCons : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACACAG-GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACC-TGA--ANT-AC---CTACACT-------ATAAAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAAAAAA--TAAG---TAAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
finalCons : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTT--TTTTTTTTTAGGTCC-GT---TGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTC--AA-ACGAATCC-TCGCTACNAACAAG-AACT----AT--CCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-G-AAAAC--GTGCCG-ACCTTTTCGAAA--A-ATTTA-CAAACAACACA----GCAGCAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAACCTA----ANT-AC---CTATCTTA---------AAAATANA-ATA--TTT--AA-AACCC-AACCACGG--ACCTA--AAAAAAA--TATA------AAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTG----ATACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAG----------GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Alignments
lowQualScore : 22 1 4444444 1 44444 1 11 33333333333333333 2222 111 111 6666666666666666666666666666666666666666 111 11111 55555555555555555555555 11 1111111111 11111111 22222222222222 11111111111111 1 22222222222
lowQualScore : 7 7 7 00 6 7 3 6 6 5555555 3 11111 6 0 2 0 0 8 11 6 8 1 1 6 33333333333333333 1 5 5 5 77 6 0000 8 6 6 111 99 6 3 555 1 9 5 5 5 8 5 5 77 2222222222222222222222222222222222222222 88 1 4 66 66 4 4 4 66 000 11111 44444444444444444444444 4 1 3 2 1 11 1 999999 9999999999 3 0 4 5 88888888 66 5 99999999999999 66666666666666 3 5 5 1 5 77 1 5 9 5 77 77777777777 4 5 5 1 4 6 5 2 4 1 5 5 6
lowQualScore : . . . .. . . . . . ....... . ..... . . . . . . .. . . . . . ................. . . . . .. . .... . . . ... .. . . ... . . . . . . . . .. ........................................ .. . . .. .. . . . .. ... ..... ....................... . . . . . .. . ...... .......... . . . . ........ .. . .............. .............. . . . . . .. . . . . .. ........... . . . . . . . . . . . . .
lowQualScore : 3 3 3 00 7 3 3 7 7 0000000 3 77777 7 0 5 2 8 0 00 0 0 4 0 7 33333333333333333 0 7 7 7 99 7 3333 0 7 7 777 22 7 2 555 7 8 7 7 7 9 1 7 99 8888888888888888888888888888888888888888 66 0 4 11 11 4 9 4 11 999 11111 88888888888888888888888 4 0 9 9 0 88 0 888888 4444444444 4 6 0 6 11111111 99 0 44444444444444 11111111111111 0 7 7 4 7 11 4 7 0 7 99 11111111111 0 7 7 4 3 6 7 7 9 1 0 7 7
consensus : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTTTTTTTTTTT-AGGTCCG--GTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTCAA-A--CGAAT-CCTCGCTACNAACAAG-AAC--T----ATCCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--A-ATTTA-C-AAACAACAC---GGCAG--CAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAAC------C-T-AA-NT-ACC-TA----C-CT-T--------AAAAAT-ANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAA-----AAA-----A--------TA------AAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
Reference ( family-6911 ) : CTATTCCAGAAATAACCAAACGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCATC------TTTTTTTTTTTTTTTTTT-AGGTCC---GTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTCAA-A--CGAAT-CCTCGCTACNAACAAG-AAC--T----ATCCA-----CAGCANAGGGCACTAACTGGATTTCAAA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--A-ATTTA-C-AAACAACAC---AGCAG--CAATAA-AATTATATTAT-CAAATTCAATATCCAT-AC-ATGG-CACAAAATATTT-AATTNAATAAAAC------C-T-AA-NT-ACC-TA----T-CT-T--------AAAAAT-ANA-ATA--TTT--AA-AACCC-AACCACGG--ACCT--AAAA-----AAA-----A--------TA-----TAAAA-TGAANATACGACCACCCATCNAAAT-AAAANTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGNC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTC-GCGCGTT-GCTTTTGTTCT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTNCT-CGCCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAATTA
gi|1 : CTATTCCAGAA-TAACCAAACGGGGGTAATGC-TATCAACCAA---TTTATTTTGAATGGGTGGTCGTATTTTCATC------TTTTTTTTTTTTTTTTTTTAGGT-----GTTTG--TTCC-GTAGTAGCCTAAGGTTTTTAAA-CTTCAA-AAACAAAT-CCTCGCTACTAACAA---AC--T----ATCTA-----AAATATAGGACACTAACTGGATTTCAAA-TCTC-GAAAAAC--GTGCCGTACTTTTTCGAAA--G-ATTTA-C-AAA-AACACTCAGGCAG--CAATAA-AATTATATT-T-CAAATTCAATA-CCAT-ACGATGGATACAAAATATTT-AATTCAATAAAAC------C-TGAA-TT-ACC-TA----CACTAT--------AAAAAT-ATA-ATA--TTT--AA-AACCC-AACCACGG--ACCTTAAAAA-----AAA-----A--------TAAAGGTTAAAAATAAAAATACGACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATTTCTGGGTAT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCTTCAAATCAA-----GGAC-TGCAAGTAA-G-GCTTTTGCTA-TAGGCATTC-TCACGTT-GCTTTTGTTCTCCAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-GGCCGAG-TTGAGCCG-TGTTGCATT-CT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGT-GTTTC-GCGTTACGTTAATTA
gi|10 : A--A-TAAAATATCCTTTTGTA--------------AAAA------------------------TGTAAGTAA-GAAACTTTGCTA-ATGGCATTC-GCGCGTT-GTTTTT-CTCT-CAAGGTCGGTTCATATGGCAGATATTTTGCATCGAAATCGTCGGGGACGT-CGGCAAG-TTCTGCCGGTGTTGTGTTACT-CGCCATGGTAAATAATG-TTGATGATGTCGGAGC-ACCGA-GGAGTTATCCCCCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGATAATT
gi|11 : -AC-ATGG-CATAAAATA-AT-AATTACAGAAAAC------C-TGAA-ATGACC-AACCACC-CT-TGACCAAAAAAAAAA-AAA-ATA--TTTTAAA-AACCC-AACCATGG--ACCT----AA-----AAA-----A--------T--------AAA-TGAATATACGACAGCCCATCTAAA--AAAAATCGGTTGCC----CCC----------C----TCCCCTTTTGGTT-ATTTCTGGA-AT--------AGCCg
gi|12 : TTTAATA-CCAT-----CGG-CATAAAATAAT--AATTACAGAAAACTGATGAC-C-AA-CC-ACC---------CT-TGACAAAA-AAAAAA-AAA-ATA--TTT--AA-AACCC-AACCATGGCCACCT----AA-----AAA-----A--------T---------AA-TGAATATAC-ACAGCCCATCTTAA--AAAAATCGGTT---------G----------CCCCCCTCCCTTTTGGTTAATTTCTGAATA
gi|13 : TTCC-ACAGTAG-----GGTGTTCAAAACTTCAA-A--CGATT-CCTCACTACAAACAAG-AAC--T----TGCCA-----CAGCAAAGGACACTAACTAGATTTCAAA-TCTCGGAAAA-CGTGTGCCA-ACCTTTTCGAAA--A-AATTgc
gi|14 : -ATT--TTT--AA-ATCCC-AACCACGG--ACCT--AAAA-----CAA-----A--------TA--------AA-TGAATATACGACTACCCATCTAAA--AAAAATCGGTTGCC----GCC----------CGTCCCCCCCGTTTGGTT-ATTTCTGGA-AT--------AGC
gi|15 : t-ACC-TA----T--T-T--------AAAAAT-ATATATG--TTT--AA-A-CCC-AACCATGG--ACCT--AAAATAAATAAG-----A--------TA-----AAAAA-TGAAAACACCACCACCCATCAAAAT-AAAATTCGGTT
gi|16 : gcACTAACTGGATTTCAAA-TCTC-GAAAA-C--GCGCTG-ACCTTTTCGAAAC-A-ATTCA-CAAAACAACAG---AGCAG--CATTAA-AATGAT-CTA---AAATTTAGTA
gi|17 : ATCCCCGTTTGGTT-ATTTCTGGATAT--------AGCCATA--A-TAAAATATCGTTTTGTA--------------A
gi|18 : AACAAG-AAC--T----CGCCA-----CAGCAAA-GGCACTAACTGGAta
gi|19 : ttctacagtagggtgtttAGGACACTGACTGGATTTCAAA-TTTC-GAAAA-C--GT
gi|2 : caaga-ACC-TA----T--T-T--------ACACATTATA-TTA--TTT--AA-ACCCCGAACCAGGG--ACCT--AAAA-----AAATTAAGA--------TA------AAAA-TGAAAATGCCACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCC-GTTTGGTT-ATTTCTGGATATTACATTTTAGCCCTA--AATAAAATATCATTTTGTAGGAAGGAGGAGGGGAGAAAATCT------CAG-----GGTC-TGTAAGTAG-CCGCTTTTGCTAATAGGCATTTTGCACGTTTGTTATTGT-CT-CAAGGT--GCCCGTATGGCAG-----------C-AAATCGTCGGGCACGTAGGGCGAGTTTGAGCCGTTGTT-CATTCCTATTCCAT----------G-TTGATGATGTC-GAGC-ATCGGCGGAGTTATCTA-CTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAAT
gi|20 : tgcGAATAATG-TTGATGATGTCGGAGC-ATCGACct
gi|3 : -ACC-TA----T-TT-A--------AAAAAT-ATT-A-A--TTT--AA-AACCC-AACCACGG--ACCT--AAAA-----AAA-----AATTAAGATTA-----AAAAA-TGAAACTGCCACCACCCATCAAAAT-AAAATTCGGTTGAT----ACG----------CATTACCCCCGTTCGGTC-AT--------GT--------AGCCCTA--A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTCCTGCAAGTAAAGAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTCTTGT-CT-CAAGGT--GCCCCTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATG-TGAATAATGTTTGATGATGTCGGAGCAACCGGCGGGAGTATCTACCTTTGCTCGGAGGGCGTGGCTTCGGCGAAACGTTAAT
gi|4 : accatgc-AAACAACAC---AGCAG--CAATAA-AATTATATTGT-CAAATTCAATATCCAT-AC-ATGA-CACAAAATGTTT-ATTTTAATAAAA-----------AA-AT-A---TA----T-----------------AT-ACT--TA--TTT--AA-AAC-------ACG---ACCT--AAAA-----AA---------------TG------AAAA-TGAAAATACGACCACTCATCAAAAT-AAAATTCGGTTGATCAATACG----------CATTACCCCCGTTT-----ATTTCTGGATAT--------AGCCCTA--A-TGAAGTATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGAC-TACAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCGCGTT-GCTTTGGTTCG-TATGGC--AGTTATTTAGCAG-----------CAAAATCGTCGGGCACAT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CGCCATGTTGAATAACG-TTG
gi|5 : aCTATTCCAGAAATAACCAAACGGG--TAATGCGTATCAACCGAATTTTTATTTTGA-TGGGTGGTCGTATTTTCAT-------TTCTATATTTTTTTTTTT-AGGTCCGTGGTTGGCTTTCC-ACAGTAGCCTAAGGTCTTTAAAACTTCAA-A--CAAATCCCTCGCTACCACCAAG-AATTAT----ATCCAAAAT-TAATATAGGGAACTGACTGGATTGCAAA-TCTC-GAAAA-C--GTGCCA-ACCTTTTCGAAAATA-ATTTA-C-AAACAACAC---A-CAGCCCAATAA-AATTATATTAT-CAAATTAAATATCCAT-AC-ATGG-CA-AAAATATTT-AATTTAATAAAAC------CTT-AA-TT-ACC-TA----
gi|6 : atattttatgtagggtCTATTCCAGAAATA-CCAA-CGGGG-TAATGCGTATCAACCGAATTTTTATTTTGA-T--GT-GTCGTATTTTCATCTTTTTATTTTTTTTTTTTTTTTTT-AGGTCCG--GTTGGCTTTCCAACAGTAGCCTAAGGTCTTTAAAACTTCAA-A---AAAT--CTCTCTACCACCAAGAAAC--TATAGATCCAAAAATTAATATAGGGAACTGACTGGATTTC-AA-TCTC-GAAAA-C--GTGCCG-ACCTTTTCGAAA--AGATTTATC-AAACAACAC---AGCAG--CAATAAGAATTATATTATGCAAATTCAATATCCATAAC-ATGG-CA-AAAATATTTCAATTTAAT-AAAC------C-T--A-TT-ACC-TA----c
gi|7 : attttaattagggACTTCAACA--CGA-T-CCTCACTACAAACAAG-AAC--G------CCA-----CAGCAAAGGGCTCTAAAAGGATTTCAAAATCTC-GGAAA-C--GTGCCG-A-CTTTTCGAAT--T-TTTTT-T-TAA-AACAC---GGCAG--C--------------------------ATACCCAT-AC-AT-G-CACAAA----TT-AATT--ACAAAAC------TGT-AAGAC-ACCAGG----C-CA-T--------GAAAG--AAA-ATATTTTT--AATATCCC-AACCACGG--ACTC--TAAA-----AAA-----A--------T----------A-TGAATATA-GAC--CCCATCTAAATAAAAAATCGGTTGCC----GCGTCCCTCCCCCCCCCCCCCCCGTTT-GTT-A-TTCTGAATAc
gi|8 : gtGTTGAT----ACG----------CATTACCCCCGTTTGGTT-ATT-------GT--------AACCCTATAA-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAG-----GGTC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CAAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTCCATTCCT-CACCATGTTGAATAATG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGCTTCGGCGATACGTTAgcc
gi|9 : --A-TAAAATATCATTTTGTA--------------AGAAAATCT-----TCAAATCAAGGAC-TGCAAGTAA-GAGCTTTTGCTA-TAGGCATTT-GCACGTT-GCTTTTGT-CT-CAAGGT--GCCCGTATGGCAG-----------CGAAATCGTCGGGCACGT-CGGCGAG-TTGAGCCGTTGTTGCATTACT-CACCATGTTGAATAACG-TTGATGATGTCGGAGC-ATCGGCGGAGTTATCTACCTTTGCTCGGTGGGCGTGGTTTC-GCGTTACGTTAATTA