lowQualScore : 111111111111111 111111111111111111111111111111111
lowQualScore : 1 11 11 11 11 11 222222 1111 66666666666666666666 11 11 1111 111111111111111 11 22222222 33333333 1 1 444 1 2222 1 111 1 2 222 5555555555 1 1 1 22 222 1 1 2 2 1 44 1 6666666 7777777777777777777777 11 1 1 2222 11 1 11 1 1 3 2 1111 1111 8888888888888 111 1 111 1 1 1 11 1 222 11 1 1 2 1 111 11 22 1 22 1 1 11 222 2222 22222 11 2 333333 888888888888888888 1 1 333333 1 1 1 111 1 1 22 111 1 222 11 1 2 3 1 1 111 1 1 1 22 1 1 11 000000000000000000000000000000000 11 3333333333333 22222 1 5555555555555555 3333 4
lowQualScore : 0 2 22 33 3 2 3 99 8 0 3 11 11 0 3 444444 3 8 8 5555 22222222222222222222 5 8 8 88 8 00 8 11 6 99 3 5555 6 6 444444444444444 22 5 5 77 5 5 5 5 5 6 6 22222222 6 99 6 99999999 8 8 0 8 6 999 0 4 66 2 111 0 0 2 2 999 0 4444 0 777 3 0 333 7 2222222222 7 3 3 3 00 555 3 6 7 3 6 3 0 11 9 0 1111111 9999999999999999999999 3 11 888 2 2 0 3 2 0 8888 88 7 2 88 7 0 2 3 0 8 8 0 8 0 8 7777 0 7777 7777777777777 0 1 0 333 7 0 9 777 0 0 0 99 8 8 3 0 222 22 0 0 0 0 3 777 33 33 0 44 0 0 66 33 222 3 6 1 5 0 77 5 5 7777 5 4 5 77 44444 22 1 8 5 5 77 6 6 0 333333 8 000000000000000000 2 7 3 222222 5 3 3 777 3 3 22 777 3 3 9 111 2 33 0 3 3 0 1 3 0 0 0 111 3 0 0 0 88 77 8 88 0 0 33 444444444444444444444444444444444 11 8 8 8 8 66 3333333333333 22222 6 1111111111111111 2222 5 5 5 77 77 99 0
lowQualScore : . . .. .. . . . .. . . . .. .. . . ...... . . . .... .................... . . . .. . .. . .. . .. . .... . . ............... .. . . .. . . . . . . . ........ . .. . ........ . . . . . ... . . .. . ... . . . . ... . .... . ... . . ... . .......... . . . . .. ... . . . . . . . .. . . ....... ...................... . .. ... . . . . . . .... .. . . .. . . . . . . . . . . . .... . .... ............. . . . ... . . . ... . . . .. . . . . ... .. . . . . . ... .. .. . .. . . .. .. ... . . . . . .. . . .... . . . .. ..... .. . . . . .. . . . ...... . .................. . . . ...... . . . ... . . .. ... . . . ... . .. . . . . . . . . . ... . . . . .. .. . .. . . .. ................................. .. . . . . .. ............. ..... . ................ .... . . . .. .. .. .
lowQualScore : 0 5 55 88 2 5 2 00 0 8 2 00 00 8 2 000000 8 0 0 2222 22222222222222222222 6 0 0 88 0 88 0 00 7 22 7 0000 7 7 666666666666666 99 7 7 99 7 7 7 7 7 7 7 55555555 7 22 7 44444444 0 0 8 0 0 222 0 2 55 5 222 2 0 5 5 000 2 8888 0 000 3 3 000 7 7777777777 3 3 3 3 00 777 3 7 3 3 7 3 0 22 8 0 2222222 8888888888888888888888 2 88 222 5 5 0 2 5 0 3333 33 3 0 33 3 0 5 2 0 0 4 0 0 0 0 0000 8 0000 0000000000000 8 0 8 666 0 0 8 222 0 0 0 55 0 0 8 0 888 55 0 0 0 0 2 555 88 22 0 55 0 0 55 22 555 0 7 3 7 1 99 7 7 0000 7 3 7 99 00000 00 4 6 9 7 99 7 7 8 222222 0 333333333333333333 0 3 3 000000 0 3 3 000 3 3 33 777 3 2 2 888 2 88 0 2 2 2 5 2 0 0 0 000 2 0 0 0 88 00 0 88 0 0 88 888888888888888888888888888888888 44 0 0 0 0 44 0000000000000 22222 0 2222222222222222 3333 7 7 7 99 99 22 0
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC-GTC--ATTGGCGATTGAAA--TT-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAATTTT-CAAA-TTCGTAAAAAAAAAAAAA--------T-GTA-GTG-AAAAACA-AATTTT-AA-TA-AGA-TTA-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGAC--A-CTTTTA-TTACCTTAACACAAA-CAATT------AC-A-TTGAC-ACGC-TAATCG-TC--G-ATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCGTT-T-T-T--GC-AC--C-CGGC-C-TT-GA-TTGAT-TAATGACG-CCGACAAA-G-AATGC-GAGCAGTATGATAATCCCAT--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCC--ATAATCGTCA-TTCAATTT--ACGA-TCAT-GCAACCACACTGTA-ATAGCGAACGA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAAT-TAAGT-TTAAACCTGGAATGGA-GCAAAAAA-AAAAAAA-------------NAAA-----GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGA--ACAACACGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGAT-GGCGAA-A-CACAAC-CA----GCCTA----GA---TA-A------CAACGACTTGCTAGATTTTTGAACGTAG-TTGTTTTA-TTTTAAAAAAAGTA-TT-TTA-TTGCANTTAA-T-AAAATG-AA-ATAATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAA-GATAA---TGAATA--ATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTATC-ACGTACT-GTG--CCTTTAACATATTATATTATCTAGTTACTTTNGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-ATT--AA--GGTGGCGAC-CCAAAT-AT-ATNT-ACAACAGTCAA-GGAT-AGGA-GTTATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACAT-T-G-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA--AT---TATGTACTGTA-GTGCT-GAAATAAAG-AA-TATAAAAT----TAAAT----ACATGTT-GTA-TTTTTATTTTTATAGTGAA-----G-TATATATT-CG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( gi|2 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC-GTC--ATTGGCGATTGAAA--TT-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAATTTT-CAAA-TTCGTTAAAAAAAAAAA---------T-GTA-GTG-AAAAACA-AATTTT-AA-TA-AGA-CTA-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGAC--A-CTTTTA-TTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--G-ATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCGTT-T-C-T--GC-AC--C-CG---C-T--GA-TTGAT-TAATGACG-CCGAC-AA-G-AATGC-GAGCAGCATGATAATCCCA---TTGAGTAT-ACGAGTCTCACTTACTCCATATTCC--A-AATCGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGTATATAGCGAACTA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GC-------AAAAAAA-------------TAA------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAA--ACAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGAT-GTCGAACA-CACACC-CA----GCCTA----GA-------------CAATGACTTGCTAGATTTTTGAACGTAA-TTGTTTTA-TATTAAAAAAAGTA-TT-TTA-TTGCAATTAA-T-AAAATG-AATATAATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AA-GATAA---TGAATA--ATT-ATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAAATTATC-ACGTACT-GTG--CCTTTAACATATTATATTAT-TAGTTACTTTTGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-ATT--AA--GGTGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGAGGTTATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--T-G-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA-TATATATATGTACTGTA-GTGCT-GAAATAAAG-AA-TATAAAAT----TAAAT----ACATGTT-GTA-TTTTTA-TTT----GTGAA-----G-TATATATT-C--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--TCGTATTGGCGATTGAAAA-TT-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAATTTT-CAAA-TTCGTAAAAAAAAAAAAAT-------T-GTA-GTG-AAAAACA-AATTTT-AA-TA-AGA-CTA-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGAC--A-CTTTTA-TTACCTTAACACAAA-CAATTCATCTTACAA-TTGACCACGC-TCATCG-TCACG-ATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCGTTCT-T-T--GC-CC--C-GG---C-TT-GA-TTGATGTAAT-ACG-CCGAC-AAAG-AATGCTGAGCAGCATGATAATCCCAAAATTGAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTA-ATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTAATAGCGAACGA--T-------TTT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GC-------AAAAAAA-------------TAAA-----GGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAA--ACAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGAT-GTCGAA-A-CACAACGCA----GCC-A----GA-------------CAATGACTTGCTAGATTTTTGA-CGTAA-TTGTTATT-TATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--G-AA-ATAATATTCTGC-ATTTTCCCAT-AAAACC-AAAAA-CATGATAA---TGAATA--ATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGGTT--AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGATTT-GAT-ATAA--TTT-ATGGTAAA-ATAA--TTATCCACGTACT-GTGGCCCTTTAACATATAATATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTATT--AAAGGGTGGCAAC--CAAAT-AT-ATTTTACAACAGTCAA-GGATTAGGAGGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACAT-T-GTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGT-ATGTA--TATATTATAT-TATGTACTGTA-GTGCT-GAAATAAAGAAA-TAT-AAAT----T-AAT----ACATGTT-GTA-TTTTAATTTT----GTGAAG----G-TATATATT-CGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC-GTC--ATTGG-GAT-GACA--TT-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A---TTT-CAAAATTCGTAAAAAAAAAAAT---------T-GTA--T---AAAACA-AATTTT-A--TA-AGA-TTA-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGAC--AGCTTTTA-T-------------------------TACAA-TTGACTACGCCTAATCG-TC--G-ATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCGTT-T-CTT--GC-AC--CGCGGCCT-T--GA-TTGAT-TAATGACG-CCGACAAA-G-AATGC-GAGCAGTATGAT-ATCCCATT-TTGAGTATCAGGAGTCTCACTTACTCCA--------A-AATCGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGTA-ATAGCGAACTATTT-------TTTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-ATAACC--TGAATGGAGGCAAAAAAAAAAAAAA-------------AAA------GGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACACAATGTCAACATGAGACAG--AAG-AC-ACGTGTCATGACTAA-CATCTACGGGAT-GGCGAA-A-CACAAC-CGACTTGCCTA----GAACAT---------CAATG---TAC--G---TTTGAGCGTAG-TTGATTTATTTTTAAAAAATGTA-TT-TTA-TTGCATTTAA-TAAAAATGAAATA-AATATTCTG--------CCATAAAAACACAACGACAA-GATAAAACTGAATAGTATT--TTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AAATTATC-ACGTACT-GTG--CCTT-------TTATATTATCTAGTTACTTTAGTG-CACA--TC-ATACTG-AT-GATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATATTT-ATTTAAA--GGTGTCAACTCCAAATAATAATCG-ACAACAGTCAACGTAT-AGGA-GTTATTGC-A-CTAATATTTTAATATAATAATGCACAGTTT--GACAA--TCGTAGC--ATTATCAA-----TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTT-G-TTGATTAGTG-TGCAAAAA--AAATATCA----TCTGTAATGTA--CA------------GTATTGTA-GTGCTAAAAATAAAG-AATTATAAAAT----T-AAT----GCATGTTCGTC-TTTTTA-TTTATA-GTGAACG---G-TATATATTCC--TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT-GTC--AT-GGCGATTGGAA--TTTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAATTTTTCAAA-TTCGTAAAACAAAAAAA---------TTGTAAGTG-AAA--CA-AATTTT-AAATA-AGA-TTATATCTCTAA--TCCAACA--TCAATAA--CGTCGATGAC----CTTTTAATTACTTAAACACACA-CAATT-------------GAC-ACGC-TAATCG-TC--G-ATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCGTT-C-T-T--GCAACCAC-CG---C-TTGGA-TTGAT-T-ATGACG-CCGAC-AA-GCAATGC-GAGCAGAATGA-AATCC--------------AC-AGT-TCACTTACTCC-TATTCC--ATCATCGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTG-ATATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG--CAG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GCAAAAAA-AAAAAAA-------------AAA------GGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGA--AC-CCACGA-ACAG--AAGTAA-ACGTGCC-TGACTAA-CATCTACGGGATGGCCAAACAGCAGA-C-CA----GCCTA----GA-------------CAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-T-TTTAAAAAAGTATTT-TTA-TTGC-ATTAA-T-AAAAT
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTCGGTC--ATTGGCGATTGAAATCTT-AGAAATTGAC-AATAG--TATGCAA--CACCG-TTC-TCACCAA----AAATTTT-CAAA-TT-GCTAAAAAAAAAAAAAAAAATATT-ATA-GTGAAAAAACACAATTTT-AA-TATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGAC--A-C-TTTA-TTACCTTAACACAAAGCAATT--------------AC-ACGC-TAATCG-TC--G-ATAATAA-T-GTCCAT-G-TT
gi|8 : --TT-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGATTTT-CAAA-TT-----GAGAGAAAAA---------C-------------ACA-AATTTTTAA-TA-AGA-TTA-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-CTTT-A-TTACCTTAACACAAG-TAATT-------------GAC--TGC-TAACCGATC--GGATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTGTT-T-G-TTCGC-AC--C-CG---CTT--GATTTGAT-TAATGACGACGGAC-AA-A-AA
gi|14 : A-TCAATAA--CGTTAATGAC--A-CTTTTA-TTACCCTAACATAAG-CAA--------GC-AATTGAC-CTTC-TAATCA-TC--G-ATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCGTT-TGT-T--GC-AC--C-C
gi|10 : AATTGAC-ACGC-TAATCG-TC--G-ATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGAT-T-CTT--GC-AC--C-CGGC-T-T--GA-TTGAT-TAATGACG-CCGACAAA-G-AATGC-CAGCAGTATGATAATCCCAT--TTGAATAT-ACGAGTCTCACTTATTCCATATTCC--ATAATCGTCA-TTCAATTT--ACa
gi|16 : cAAGT-TTAAACCTGAA-TGGA-GC-------AAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACTAA-CATTTACTGGAC-GGCGAA-A-CACAAC-CA----GCCTAACCTGATGTAAAACTCAGTCAACGACTTGCTAGA
gi|6 : cTACGGGAT-GGCGAA-A-CACAAC-CA----GCCTA----GAGTCTAGA------CAACAACTTGCTAGATTTTTGAACATAG-TTGTTTTA-TTTTAAAAAAAGTA-TT-TCA-TTGC-ATTAA-T-AAAATG-AA-ATAATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAA-GATAA---TGAATA--ATT-ATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AAATTATC-ACGCACT-GTG--CCTTTAACATATTACATTATCTAGTTACTTTTGTG-CAAA--TCAATAacatcatgtacgtt
gi|5 : TCAA-T-AAGGTG-AAAAATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AA-GA-AA---TGAATA--ATTTATTCGAGTGTAG--AGTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAA-AGTAAATTATC-ACGTACTAGTG--CCTTTAA-ATATTA-AT-ATATAGTTTATTTTGTG-CAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT-TTT-ATTA-AA--GGTGGCGACGCCAAAT-AT-ATAT-ACAACAGTCAA-GGAT-AGG-CGTTATTGC-AGCT-ATATTTTAATATAATAATGCACAGTTTTGACCAA--TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--T-G--TGATTAGTG-TGC-AAAGAAAAATC--A----TCTGT-AATTAATCATA--AT---TATGT--TGTA-GTGCT-GAAATAAAG-AC-TATAAAAT----T--AT----ACATGTT-GTATTTTTTATTTT----GAGAATTTAGG-TATATA-T-G--TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|13 : attCCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GTACTCCTATC-A-GTGCT-GTG--CCT-----GTATTA----AC-TAGTTACTTTAGTG-CAAA--TCAACACTG-AT-GTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|12 : GTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT----CTATC-A-GTACT------CCT-------ATCAG--TGC-TTGTTACTTTAGTG-CAAA--TCAATACTGAAT-GTTTATAACA-----TATTTTTAG-TTAAAAAATA
gi|15 : cAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTATC-ACGTACT-GTG--CCTTTTACATATTATATTATCTCCTTACTTTAGTG-CAAA--TCAATACTG-AT-GAT
gi|9 : ATAATAATGCACAGTTTTGA-CAAAT-AGTAGC--ATTA-CAAATAATT-GTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACAT-T-G-TTGATTAAT
gi|11 : TT-ATACA--TTG-TTAATTAGTG-CTC-AAAG--AAA-A--A----TC---------------------ATATGTA------GAGCC-GAAATAAAG-AA-TATAGAATAAAGTAAATTAACACATGTC-----TTTTTA-TTTTATAGTGAA-----GTTATACATT-CG-TCGTA-CGCAA-AACTG-G--CTAA--TGGTcatctgtaagtgttgaaataaagaataaaattaatacatttgtcttttattttatagtgaaggtattatttattcgtatgcaaagtgaacttaagctggtctaaaaatcctggctaaatccctg
gi|9 : CTGTAAGTGTT-GAAATAAAG-AA-TA--AAAT----TAA-T----ACAT-TT-GT--CTTTTA-TTTTATAGTGAA-----GGTAT-TATT-TATTCGTA-TGCAA-A-GTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCTaaa
gi|18 : ataataatgcacagttttgacaaatagtagcattacaaataattgtaaatgtgatgagcataaactttatttatgttatacattgttgattaatcatATATT-CG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTg
gi|19 : TT-G--TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
Alignments
lowQualScore : 11 1111 333333333333333333 1 66666666666666 11 11 2222 22222 222222 111 1 3 111 3333333333 1 1 1 11 111 1 1 2 2 6666666666666666666 2222 1 111 11 1111 888888888888888888888 1 1 111 111 1 2222 11111 11111 1 55555555555555 1 11 22 3 1 1 1 1 1 1 1 111 1 111 11 1 11 1111111 7777777777777777777777777777 111 222222 1111 11 111 22 11
lowQualScore : 8 11 8 0 0 6 99 6 99 99 1 6 4444 1 6 6 6 2 888888888888888888 6 6 3 6 6 6 99 5 77 1 77 5 5 5 11111111111111 33 5 5 11 5 5 5 5 5 5 5 0000 5 77777 6 6 6 1 8 2 11 111111 8 11 0 66 8 8 111 0 0 777 6 7777777777 3 0 0 0 22 777 0 1 3 0 0 0 8 0 6 8 2222222222222222222 0 5 0 8 0 8 1111 0 777 3 2 6 33 3 8 0 8 6 6 6 6 4444 000000000000000000000 66 3 8 6 0 8 8 0 8 8 8 8 6 6 6 1 8 8 8 8 8 8 0 0 444 0 0 8 8 0 8 8 11 88 444 5 5 66 5 0 2222 5 2 5 66 55555 5 0 1 5 66 5 5 99999 6 0 2 88888888888888 6 3 0 33 33 2 0 2 0 0 1 0 0 0 0 0 111 0 0 5 222 11 8 11 8 0 8 8 8 8 0 8 8 8 6 44 6 6 6 99 4444444 8888888888888888888888888888 6 333 6 888888 4444 6 33 7 777 6 22 6 11 5 3 5 5 66 66 77 5
lowQualScore : . .. . . . . .. . .. .. . . .... . . . . . .................. . . . . . . .. . .. . .. . . . .............. .. . . .. . . . . . . . .... . ..... . . . . . . .. ...... . .. . .. . . ... . . ... . .......... . . . . .. ... . . . . . . . . . . ................... . . . . . . .... . ... . . . .. . . . . . . . . .... ..................... .. . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . .. .. ... . . .. . . .... . . . .. ..... . . . . .. . . ..... . . . .............. . . . .. .. . . . . . . . . . . . ... . . . ... .. . .. . . . . . . . . . . . .. . . . .. ....... ............................ . ... . ...... .... . .. . ... . .. . .. . . . . .. .. .. .
lowQualScore : 0 00 0 8 8 7 22 7 22 22 0 7 2222 7 7 7 7 5 333333333333333333 7 7 3 7 7 7 22 7 99 7 99 7 7 7 66666666666666 11 0 0 99 0 0 0 0 7 7 7 3333 7 77777 7 7 7 7 0 2 66 444444 0 66 8 22 0 0 888 0 0 555 5 2222222222 2 0 0 0 55 000 0 0 2 0 0 0 0 8 4 0 0000000000000000000 8 6 8 0 8 0 2222 5 555 2 0 5 88 2 0 8 0 7 7 7 7 2222 555555555555555555555 66 8 0 0 8 0 0 8 0 0 0 0 6 7 7 7 0 0 0 0 0 0 0 8 000 8 8 0 0 8 0 0 66 88 444 7 0 99 0 0 0000 0 5 0 99 22222 0 1 0 0 99 7 7 55555 7 0 5 88888888888888 5 2 0 88 88 0 0 5 0 0 0 0 0 0 0 0 000 0 8 6 000 00 0 66 0 0 0 0 0 0 8 0 0 0 7 00 7 7 7 22 3333333 3333333333333333333333333333 7 000 7 888888 2222 7 88 3 333 7 55 7 44 0 2 0 0 99 99 99 7
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GA----A-A--------CAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TTA-TTGCATTTAA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-ATT--AAA-GGTGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGA-GT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA-AAAT----T-AAT----ACATGTT-GTA-TTTTTATTTT-ATAG-TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( family-689 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCAT-GCAACCACACTGT-A-ATAGCGAACGA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAAT-TAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAANAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACACGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GA---TA-A--------CAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TTA-TTGCANTTAA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-ATT--AA--GGTGGCGAC-CCAAAT-AT-ATNT-ACAACAGTCAA-GGAT-AGGA-GT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA-AAAT----TAAAT----ACATGTT-GTA-TTTTTATTTTTATAG-TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTCTCG-T-ATTGGCGATTGAAAAT--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------TTGT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAA-TTGACCACGC-TCATCG-TCACGATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCG-TTC-T-TTGC-CC-CG--GC-TTGA-TTGATGTAAT-ACG-CCGACAAAGAATGCTGAGCAGCATGATAATCCCA-AAATTGAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTAATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTA-ATAGCGAACGA--T-------TTT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GCAAAAAAA------------------TAAAGGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAAA---CAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGATGTCGAA-ACA-CA-ACGCA----GCC-A----GA---------------CAATGACTTGCTAGATTTTTGA-CGT-AATTGTT--A-TTTATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--GAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACC-AAAAACATGATAA---TGAATAATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGGTT--AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGATTT-GAT-ATAA--TTT-ATGGTAAA-ATAA--TTATCCACGTACT-GTGGCCCTTTAACATATAA-TATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTATT--AAAGGGTGGCAAC-C-AAAT-AT-ATTTTACAACAGTCAA-GGATTAGGA-GGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACA-TTGTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGT-ATGTA--TATATTATAT---TATGTACTGTAGTGCT-GAAATAAAGAA--ATATAAAT----T-AAT----ACATGTT-GTA-TTTTAATTTT----G-TGAAG-GT-ATATATTCGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|10 : A--TTGAC-ACGC-TAATCG-TC--GATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGATT--C-TTGCACC-CG--G-CTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-CAGCAGTATGATAATCCCA-T--TTGAATAT-ACGAGTCTCACTTATTCCATATTCCATAAT-CGTCA-TTCAATTT--AC
gi|11 : caTT-ATACA-TTG-TTAATTAGTG-CTC-AAAG--AAA-A--A----TC------------ATA----------------TGTAGAGCC-GAAATAAAGAA-TATA-GAATAAAGTAAATTAACACATGTC-----TTTTTATTTT-ATAG-TGAA--GTTATACATTCG-TCGTA-CGCAA-AACTG-G--CTAA--TGGT
gi|12 : CGTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT----CTATC-A-GTACT------CCT-------ATCAGTG----CTTGTTACTTTAGTG-CAAA--TCAATACTGAAT-GTTTATAACA-----TATTTTTAG-TTAAAAAATAaaa
gi|13 : CCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GTACTCCTATC-A-GTGCT-GTG--CCT----------G-TATTAACTAGTTACTTTAGTG-CAAA--TCAACACTG-AT-GTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|14 : A-TCAATAA--CGTTAATGA--CA-CTTTT-ATTACCCTAACATAAG-CAAGC------A-A--TTGAC-CTTC-TAATCA-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TGTTGCACC-C
gi|15 : AAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTATC-ACGTACT-GTG--CCTTTTACATATTA-TATTATCTCCTTACTTTAGTG-CAAA--TCAATACTG-AT-GATa
gi|16 : AAGT-TTAAACCTG-AATGGA-GCAAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACTAA-CATTTACTGGACGGCGAA-ACA-CA-AC-CA----GCCTAACCTGATG-TA-AAACTCAGTCAACGACTTGCTAGA
gi|18 : cATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTacatcatgtacgtt
gi|19 : TTTG-TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
gi|2 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTTAAAAAAAAAAA--------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-CTGCACC-CG-----CTGA-TTGAT-TAATGACG-CCGACAA-GAATGC-GAGCAGCATGATAATCCCA-T--T-GAGTAT-ACGAGTCTCACTTACTCCATATTCCA-AAT-CGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGT-ATATAGCGAACTA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GCAAAAAAAT-A-----------A-------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGTCGAACACA-CA-CC-CA----GCCTA----GA---------------CAATGACTTGCTAGATTTTTGAACGT-AATTGTTTTA-TAT-TAAAAAAA-GTA-TT-TTA-TTGCAATTAA-T-AAAATGAATAT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AAGATAA---TGAATAATT-ATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTAT-TAGTTACTTTTGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-ATT--AA--GGTGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGAGGT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--TG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATAT---ATATATATGTACTGTAGTGCT-GAAATAAAGAA-TATA-AAAT----TAAAT----ACATGTT-GTA-TTTTTATTT-----G-TGAA--GT-ATATATTC--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC--G-TCATTGG-GAT-GACA-T--T-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A----TTT-CAAAATTCGTAAAAAAAAAAAT--------T-GT-A-T--AAAA-CA-AATTTT-A-TA-AGATT-A-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGA--CAGCTTTT-ATTAC-----------------------A-A--TTGACTACGCCTAATCG-TC--GATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TCTTGCACCGCG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGAT-ATCCCATT--TTGAGTATCAGGAGTCTCACTTACTCCA-A------AAT-CGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGT-A-ATAGCGAACTATTT-------TTTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-AT-AACCT-GAATGGAGGCAAAAAAAA-A-----------AAAAAAAAGGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACAC-AATGTCAACATGAGACAG--AAG-AC-ACGTGTCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CGACTTGCCTA----G-----A-A--------CATCAATGTAC--G---TTTGAGCGT-AGTTGATTTATTTT-TAAAAAAT-GTA-TT-TTA-TTGCATTTAA-TAAAAATGAA-ATAA-ATATTCTG--------CCATAAAAACACAACGACAAGATAAAACTGAATAGTATTTTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AAATTATC-ACGTACT-GTG--CCTT-------TTA-TATTATCTAGTTACTTTAGTG-CACA--TC-ATACTG-AT-GATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATATTT-ATTTAAA--GGTGTCAACTCCAAATAATAATCG-ACAACAGTCAACGTAT-AGGA-GT-TATTGC-A-CTAATATTTTAATATAATAATGCACAGTTT--GACAA--TCGTAGC--ATTATCA----A-TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTTG-TTGATTAGTG-TGCAAAAA--AAATATCA----TCTGTAATGTA--CA--------------GTATTGTAGTGCTAAAAATAAAGAATTATA-AAAT----T-AAT----GCATGTTCGTC-TTTTTA--TTTATAG-TGAACGGT-ATATATTCC-TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT--G-TCAT-GGCGATTGGAA-T--TTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAA-TTTTTCAAA-TTCGTAAAACAAAAAAAT-------T-GTAAGTG--AAA-CA-AATTTTAAATA-AGATT-ATATCTCTAA--TCCAAC-A-TCAATAA--CGTCGATGA--C--CTTTTAATTACTTAAACACACA-CA-----------A--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCG-TT--C-TTGCAAC-CACCGCTTGGA-TTGAT-T-ATGACG-CCGACAAGCAATGC-GAGCAGAATGA-AATCC---------------AC-AGT-TCACTTACTCC-TATTCCATCAT-CGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTGA-T-ATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG--CAG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GCAAAAAAAA-A-----------AAAA-AAAGGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGAA---C-CCACGA-ACAG--AAGTAA-ACGTGCC-TGACTAA-CATCTACGGGATGGCCAA-ACAGCAGAC-CA----GCCTA----G-------A--------CAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-TTT-T-AAAAAA-GTATTT-TTA-TTGCA-TTAA-T-AAAAT
gi|5 : TCAA-T-AAGGTGAA-AA-ATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AAGA-AA---TGAATAATTTATTCGAGTGTAG-A-GTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAAAGTAAA-TTATC-ACGTACTAGTG--CCTTTAA-ATATTA--AT-ATATAGTTTATTTTGTG-CAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT-TTT-ATT--AAA-GGTGGCGACGCCAAAT-AT-ATAT-ACAACAGTCAA-GGAT-AGGC-GT-TATTGC-AGCT-ATATTTTAATATAATAATGCACAGTTTTGACCAA--TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--TG--TGATTAGTG-TGC-AAAGAAAAATC--A----TCTGT-AATTAATCATA----AT---TATGT--TGTAGTGCT-GAAATAAAGAC-TATA-AAAT----T--AT----ACATGTT-GTATTTTTTATTTTGAGAATTTAG--GT-ATATAT--G-TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|6 : attTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GAGTCTAGA--------CAACAACTTGCTAGATTTTTGAACAT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TCA-TTGCA-TTAA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAA-TTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AAATTATC-ACGCACT-GTG--CCTTTAACATATTA-CATTATCTAGTTACTTTTGTG-CAAA--TCAATA
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTC--GGTCATTGGCGATTGAAA-TCTT-AGAAATTGACAA-TAG--TATGCAA--CACCG-TTC-TCACC-A----AAAATTTT-CAAA-TTGCTAAAAAAAAAAAAAAAAATATT-AT-AGTGAAAAAACACAATTTT-AATATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGA--CA-CTTT--ATTACCTTAACACAAAGCAATT------ACA---------CGC-TAATCG-TC--GATAATAA-T-GTCCAT-G-TT
gi|8 : -T--T-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGA-TTTT-CAAA-TT------GAGAGAAAAA-------C------------A-CA-AATTTTTAATA-AGATT-A-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-C-TTT-ATTACCTTAACACAAG-TA-----------A--TTGAC--TGC-TAACCGATCG-GATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTG-TTTGT-TCGCACC-CG----CTTGATTTGAT-TAATGACGACGGACAAAAA
gi|9 : ATAATAATGCACAGTTTTGA-CAAAT-AGTAGC--ATTA-CAAATAA-TTGTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATT----------------AATC--A----TCTGT-A-----------------------------AGTGTT-GAAATAAAGA---ATA-AAAT----T-AAT----ACAT-TT-GT--CTTTTA-TTTTATAG-TGAAG-GT-AT-TATTTATTCGTA-TGC-A-AAGTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCT
Alignments
lowQualScore : 11 1111 333333333333333333 1 66666666666666 11 11 2222 22222 222222 111 1 1 111 3333333333 1 1 1 11 111 1 1 2 1 3333333333333333333333 2222 1 111 11 1111 77777777777777777777777 1 111 111 1 2222 11111 11111 1 55555555555555 111 1 1 1 1 1 1 1 1 111 1 111 11 1 11 1111111 7777777777777777777777777777 111 333333333 11 1111111 22 11
lowQualScore : 8 11 8 0 0 6 99 6 99 99 1 6 4444 1 6 6 6 2 888888888888888888 6 6 3 6 6 6 99 5 77 1 77 5 5 5 11111111111111 33 5 5 11 5 5 5 5 5 5 5 0000 5 77777 6 6 6 1 8 1 11 111111 8 11 0 66 8 8 111 0 0 777 1 7777777777 3 0 0 0 22 777 0 1 3 0 0 5 8 0 6 8 0 8888888888888888888888 0 5 0 8 0 8 1111 0 777 3 6 33 3 8 0 8 6 6 6 6 4444 33333333333333333333333 66 3 8 6 0 8 8 0 8 8 8 8 3 1 6 6 1 8 8 8 8 8 8 0 0 444 0 0 8 8 0 8 8 11 88 444 5 5 66 5 0 2222 5 2 5 66 55555 5 0 1 5 66 5 5 99999 6 0 2 88888888888888 6 3 111 3 0 8 0 0 1 0 0 0 0 0 111 0 0 5 222 11 8 11 8 0 8 8 8 8 0 8 8 8 6 44 6 6 6 99 4444444 8888888888888888888888888888 6 333 333333333 6 6 33 3333333 22 6 11 5 3 5 5 66 66 77 5
lowQualScore : . .. . . . . .. . .. .. . . .... . . . . . .................. . . . . . . .. . .. . .. . . . .............. .. . . .. . . . . . . . .... . ..... . . . . . . .. ...... . .. . .. . . ... . . ... . .......... . . . . .. ... . . . . . . . . . . . ...................... . . . . . . .... . ... . . .. . . . . . . . . .... ....................... .. . . . . . . . . . . . . . . . . . . . . . . . . ... . . . . . . . .. .. ... . . .. . . .... . . . .. ..... . . . . .. . . ..... . . . .............. . . ... . . . . . . . . . . . ... . . . ... .. . .. . . . . . . . . . . . .. . . . .. ....... ............................ . ... ......... . . .. ....... .. . .. . . . . .. .. .. .
lowQualScore : 0 00 0 8 8 7 22 7 22 22 0 7 2222 7 7 7 7 5 333333333333333333 7 7 3 7 7 7 22 7 99 7 99 7 7 7 66666666666666 11 0 0 99 0 0 0 0 7 7 7 3333 7 77777 7 7 7 7 0 4 66 444444 0 66 8 22 0 0 888 0 8 555 0 2222222222 2 0 0 0 55 000 0 0 2 0 0 0 0 8 4 0 8 8888888888888888888888 8 6 8 0 8 0 2222 5 555 2 5 88 2 0 8 0 7 7 7 7 2222 00000000000000000000000 66 8 0 0 8 0 0 8 0 0 0 0 5 7 7 7 7 0 0 0 0 0 0 0 8 000 8 8 0 0 8 0 0 66 88 444 7 0 99 0 0 0000 0 5 0 99 22222 0 1 0 0 99 7 7 55555 7 0 5 88888888888888 5 2 000 2 0 8 0 0 2 0 0 0 0 0 000 0 8 6 000 00 0 66 0 0 0 0 0 0 8 0 0 0 7 00 7 7 7 22 3333333 3333333333333333333333333333 7 000 333333333 7 7 88 5555555 55 7 44 0 2 0 0 99 99 99 7
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG--------AG-----A-------CAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TTA-TTGCATTTAA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-A-TTAAAGG-TGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGA-GT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( family-689 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG--------AA-----A-------CAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TTA-TTGCATTTAA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-A-TTAAAGG-TGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGA-GT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTCTCG-T-ATTGGCGATTGAAAAT--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------TTGT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAA-TTGACCACGC-TCATCG-TCACGATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCG-TTC-T-TTGC-CC-CG--GC-TTGA-TTGATGTAAT-ACG-CCGACAAAGAATGCTGAGCAGCATGATAATCCCA-AAATTGAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTAATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTA-ATAGCGAACGA--T-------TTT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GCAAAAAAAT-A-----------AA------GGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAAA---CAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGATGTCGAA-ACA-CA-ACGCA----GCC-----------AG-----A-------CAATGACTTGCTAGATTTTTGA-CGT-AATTGTT--A-TTTATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--GAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACC-AAAAACATGATAA---TGAATAATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGGTT--AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGATTT-GAT-ATAA--TTT-ATGGTAAA-ATAA--TTATCCACGTACT-GTGGCCCTTTAACATATAA-TATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTA-TTAAAGGGTGGCAAC--CAAAT-AT-ATTTTACAACAGTCAA-GGATTAGGA-GGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACA-TTGTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGT-ATGTA--TATATTATAT---TATGTACTGTAGTGCT-GAAATAAAGAA--ATAT--------AAATT-AATACATGTT-GTA-TTTTAATTTT---G---TGAAG-GT-ATATATTCGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|10 : A--TTGAC-ACGC-TAATCG-TC--GATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGATT--C-TTGCACC-CG--G-CTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-CAGCAGTATGATAATCCCA-T--TTGAATAT-ACGAGTCTCACTTATTCCATATTCCATAAT-CGTCA-TTCAATTT--AC
gi|11 : caTT-ATACA-TTG-TTAATTAGTG-CTC-AAAG--AAA-A--A----TC------------ATA----------------TGTAGAGCC-GAAATAAAGAA-TATAGAATAAAGTAAATT-AACACATGTC-----TTTTTATTTTATAG---TGAA--GTTATACATTCG-TCGTA-CGCAA-AACTG-G--CTAA--TGGT
gi|12 : CGTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT----CTATC-A-GTACT------CCT-------ATCAGTG----CTTGTTACTTTAGTG-CAAA--TCAATACTGAAT-GTTTATAACA-----TATTTTTAG-TTAAAAAATAaaa
gi|13 : CCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GTACTCCTATC-A-GTGCT-GTG--CCT----------G-TATTAACTAGTTACTTTAGTG-CAAA--TCAACACTG-AT-GTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|14 : A-TCAATAA--CGTTAATGA--CA-CTTTT-ATTACCCTAACATAAG-CAAGC------A-A--TTGAC-CTTC-TAATCA-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TGTTGCACC-C
gi|15 : AAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTATC-ACGTACT-GTG--CCTTTTACATATTA-TATTATCTCCTTACTTTAGTG-CAAA--TCAATACTG-AT-GATa
gi|16 : AAGT-TTAAACCTG-AATGGA-GCAAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACTAA-CATTTACTGGACGGCGAA-ACA-CA-AC-CA----GCCTAACCTGATGTAA-----AACTCAGTCAACGACTTGCTAGA
gi|18 : cATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTacatcatgtacgtt
gi|19 : TTTG-TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
gi|2 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTTAAAAAAAAAAA--------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-CTGCACC-CG-----CTGA-TTGAT-TAATGACG-CCGACAA-GAATGC-GAGCAGCATGATAATCCCA-T--T-GAGTAT-ACGAGTCTCACTTACTCCATATTCCA-AAT-CGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGT-ATATAGCGAACTA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GCAAAAAAAT-A-----------A-------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGTCGAACACA-CA-CC-CA----GCCTAG--------A--------------CAATGACTTGCTAGATTTTTGAACGT-AATTGTTTTA-TAT-TAAAAAAA-GTA-TT-TTA-TTGCAATTAA-T-AAAATGAATAT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AAGATAA---TGAATAATT-ATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAAATTATC-ACGTACT-GTG--CCTTTAACATATTA-TATTAT-TAGTTACTTTTGTG-CAAA--TCAATACTG-AT-GATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATATTT-A-TT-AAGG-TGGCAACGCCAAAT-AT-ATTT-ACAACAGTCAA-GGAT-AGGAGGT-TATTGC-A-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--TG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATAT---ATATATATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATTAAATACATGTT-GTA-TTTTTATTT----G---TGAA--GT-ATATATTC--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC--G-TCATTGG-GAT-GACA-T--T-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A----TTT-CAAAATTCGTAAAAAAAAAAAT--------T-GT-A-T--AAAA-CA-AATTTT-A-TA-AGATT-A-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGA--CAGCTTTT-ATTAC-----------------------A-A--TTGACTACGCCTAATCG-TC--GATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TCTTGCACCGCG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGAT-ATCCCATT--TTGAGTATCAGGAGTCTCACTTACTCCA-A------AAT-CGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGT-A-ATAGCGAACTATTT-------TTTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-AT-AACCT-GAATGGAGGCAAAAAAAA-A-----------AAAAAAAAGGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACAC-AATGTCAACATGAGACAG--AAG-AC-ACGTGTCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CGACTTGCCTAG---------A-----A-------CATCAATGTAC--G---TTTGAGCGT-AGTTGATTTATTTT-TAAAAAAT-GTA-TT-TTA-TTGCATTTAA-TAAAAATGAA-ATAA-ATATTCTG--------CCATAAAAACACAACGACAAGATAAAACTGAATAGTATTTTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AAATTATC-ACGTACT-GTG--CCTT-------TTA-TATTATCTAGTTACTTTAGTG-CACA--TC-ATACTG-AT-GATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATATTT-ATTTAAAGG-TGTCAACTCCAAATAATAATCG-ACAACAGTCAACGTAT-AGGA-GT-TATTGC-A-CTAATATTTTAATATAATAATGCACAGTTT--GACAA--TCGTAGC--ATTATCA----A-TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTTG-TTGATTAGTG-TGCAAAAA--AAATATCA----TCTGTAATGTA--CA--------------GTATTGTAGTGCTAAAAATAAAGAATTATA---------AAATT-AATGCATGTTCGTC-TTTTTA-TTTATAG---TGAACGGT-ATATATTCC-TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT--G-TCAT-GGCGATTGGAA-T--TTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAA-TTTTTCAAA-TTCGTAAAACAAAAAAAT-------T-GTAAGTG--AAA-CA-AATTTTAAATA-AGATT-ATATCTCTAA--TCCAAC-A-TCAATAA--CGTCGATGA--C--CTTTTAATTACTTAAACACACA-CA-----------A--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCG-TT--C-TTGCAAC-CACCGCTTGGA-TTGAT-T-ATGACG-CCGACAAGCAATGC-GAGCAGAATGA-AATCC---------------AC-AGT-TCACTTACTCC-TATTCCATCAT-CGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTGA-T-ATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG--CAG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GC-AAAAAAA-A-----------AAAAAAAAGGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGAA---C-CCACGA-ACAG--AAGTAA-ACGTGCC-TGACTAA-CATCTACGGGATGGCCAA-ACAGCAGAC-CA----GCCTAG---------------A-------CAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-TTT-T-AAAAAA-GTATTT-TTA-TTGCA-TTAA-T-AAAAT
gi|5 : TTCAA-T-AAGGTGAA-AA-ATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AAGA-AA---TGAATAATTTATTCGAGTGTAG-A-GTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAAAGTAAA-TTATC-ACGTACTAGTG--CCTTTAA-ATATTA--AT-ATATAGTTTATTTTGTG-CAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT-TTT-A-TTAAAGG-TGGCGACGCCAAAT-AT-ATAT-ACAACAGTCAA-GGAT-AGGC-GT-TATTGC-AGCT-ATATTTTAATATAATAATGCACAGTTTTGACCAA--TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--TG--TGATTAGTG-TGC-AAAGAAAAATC--A----TCTGT-AATTAATCATA----AT---TATGT--TGTAGTGCT-GAAATAAAGAC-TATA---------AAATT--ATACATGTT-GTATTTTTTATTTTG-AGAATTTAG--GT-ATATAT--G-TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|6 : atTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG--------AGTCTAGA-------CAACAACTTGCTAGATTTTTGAACAT-AGTTGTTTTA-TTT-TAAAAAAA-GTA-TT-TCA-TTGCATT-AA-T-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAA-TTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AAATTATC-ACGCACT-GTG--CCTTTAACATATTA-CATTATCTAGTTACTTTTGTG-CAAA--TCAATA
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTC--GGTCATTGGCGATTGAAA-TCTT-AGAAATTGACAA-TAG--TATGCAA--CACCG-TTC-TCACC-A----AAAATTTT-CAAA-TTGCTAAAAAAAAAAAAAAAAATATT-AT-AGTGAAAAAACACAATTTT-AATATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGA--CA-CTTT--ATTACCTTAACACAAAGCAATT------ACA---------CGC-TAATCG-TC--GATAATAA-T-GTCCAT-G-TT
gi|8 : -T--T-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGA-TTTT-CAAA-TT------GAGAGAAAAA-------C------------A-CA-AATTTTTAATA-AGATT-A-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-C-TTT-ATTACCTTAACACAAG-TA-----------A--TTGAC--TGC-TAACCGATCG-GATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTG-TTTGT-TCGCACC-CG----CTTGATTTGAT-TAATGACGACGGACAAAAA
gi|9 : ATAATAATGCACAGTTTTGA-CAAAT-AGTAGC--ATTA-CAAATAA-TTGTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATT----------------AATC--A----TCTGT-A-----------------------------AGTGTT-GAAATAAAGA---ATA---------AAATT-AATACAT-TT-GT--CTTTTATTTTATAG---TGAAG-GT-AT-TATTTATTCGTA-TGC-A-AAGTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCT
Alignments
lowQualScore : 11 1111 333333333333333333 1 66666666666666 11 11 2222 22222 222222 111 1 1 111 3333333333 1 1 1 11 111 1 1 2 1 3333333333333333333333 2222 1 111 11 1111 666666666666666666666666 1 1 111 111 1 2222 11111 11111 1 55555555555555 11 1 1 1 111 1 1 2 1 1 1 111 11 1 11 1111111 7777777777777777777777777777 111 333333333 11 1111111 22 11
lowQualScore : 8 11 8 0 0 6 99 6 99 99 1 6 4444 1 6 6 6 2 888888888888888888 6 6 3 6 6 6 99 5 77 1 77 5 5 5 11111111111111 33 5 5 11 5 5 5 5 5 5 5 0000 5 77777 6 6 6 1 8 1 11 111111 8 11 0 66 8 8 111 0 0 777 1 7777777777 3 0 0 0 22 777 0 1 3 0 0 5 8 0 6 8 0 8888888888888888888888 0 5 0 8 0 8 1111 0 777 3 6 33 3 8 0 8 6 6 6 6 4444 000000000000000000000000 66 0 8 5 8 8 88 8 8 8 3 88 6 1 8 8 8 8 8 8 0 0 444 0 0 8 8 0 8 8 11 5 8 444 5 5 66 5 0 2222 5 2 5 66 55555 5 0 1 5 66 5 5 99999 6 0 2 88888888888888 6 33 0 3 0 55 0 111 1 0 0 0 0 0 0 0 5 222 11 8 11 8 0 8 8 8 8 0 8 8 8 6 44 6 6 6 99 4444444 8888888888888888888888888888 6 333 333333333 6 6 33 3333333 22 6 11 5 3 5 5 66 66 77 5
lowQualScore : . .. . . . . .. . .. .. . . .... . . . . . .................. . . . . . . .. . .. . .. . . . .............. .. . . .. . . . . . . . .... . ..... . . . . . . .. ...... . .. . .. . . ... . . ... . .......... . . . . .. ... . . . . . . . . . . . ...................... . . . . . . .... . ... . . .. . . . . . . . . .... ........................ .. . . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . .. . . ... . . .. . . .... . . . .. ..... . . . . .. . . ..... . . . .............. . .. . . . .. . ... . . . . . . . . . ... .. . .. . . . . . . . . . . . .. . . . .. ....... ............................ . ... ......... . . .. ....... .. . .. . . . . .. .. .. .
lowQualScore : 0 00 0 8 8 7 22 7 22 22 0 7 2222 7 7 7 7 5 333333333333333333 7 7 3 7 7 7 22 7 99 7 99 7 7 7 66666666666666 11 0 0 99 0 0 0 0 7 7 7 3333 7 77777 7 7 7 7 0 4 66 444444 0 66 8 22 0 0 888 0 8 555 0 2222222222 2 0 0 0 55 000 0 0 2 0 0 0 0 8 4 0 8 8888888888888888888888 8 6 8 0 8 0 2222 5 555 2 5 88 2 0 8 0 7 7 7 7 2222 222222222222222222222222 66 8 0 8 0 0 88 0 0 0 5 33 7 7 0 0 0 0 0 0 0 8 000 8 8 0 0 8 0 0 66 6 0 444 7 0 99 0 0 0000 0 5 0 99 22222 0 1 0 0 99 7 7 55555 7 0 5 88888888888888 5 22 0 2 0 00 0 000 2 0 0 0 0 0 0 8 6 000 00 0 66 0 0 0 0 0 0 8 0 0 0 7 00 7 7 7 22 3333333 3333333333333333333333333333 7 000 333333333 7 7 88 5555555 55 7 44 0 2 0 0 99 99 99 7
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AG-----ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( family-689 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AG-----ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGA-GTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTCTCG-T-ATTGGCGATTGAAAAT--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------TTGT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAA-TTGACCACGC-TCATCG-TCACGATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCG-TTC-T-TTGC-CC-CG--GC-TTGA-TTGATGTAAT-ACG-CCGACAAAGAATGCTGAGCAGCATGATAATCCCA-AAATTGAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTAATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTA-ATAGCGAACGA--T-------TTT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GCAAAAAAAT-A-----------AA------GGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAAA---CAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGATGTCGAA-ACA-CA-ACGCA----GCC------------------AG-----ACAATGACTTGCTAGATTTTTG-ACGT-AATTG--TTA-TTTATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--GAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACC-AAAAACATGATAA---TGAATAATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGG-TT-AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGA-TTTGAT-ATAA--TTT-ATGGTAAA-AT--AATTATCCACGTACT-GTGGCCCTTTAACATATAA-TATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTA-TTAAAGGGTGGCAA--CCAAAT-AT-ATTTTACAACAGTCAA-GGATTAGGAGGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACA-TTGTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGT-ATGTA--TATATTATAT---TATGTACTGTAGTGCT-GAAATAAAGAA--ATAT--------AAATT-AATACATGTT-GTA-TTTTAATTTT---G---TGAAG-GT-ATATATTCGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|10 : A--TTGAC-ACGC-TAATCG-TC--GATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGATT--C-TTGCACC-CG--G-CTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-CAGCAGTATGATAATCCCA-T--TTGAATAT-ACGAGTCTCACTTATTCCATATTCCATAAT-CGTCA-TTCAATTT--AC
gi|11 : caTT-ATACA-TTG-TTAATTAGTG-CTC-AAAG--AAA-A--A----TC------------ATA----------------TGTAGAGCC-GAAATAAAGAA-TATAGAATAAAGTAAATT-AACACATGTC-----TTTTTATTTTATAG---TGAA--GTTATACATTCG-TCGTA-CGCAA-AACTG-G--CTAA--TGGT
gi|12 : CGTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT----CTAT-CA-GTACT------CCT-------ATCAGTG----CTTGTTACTTTAGT-GCAAA--TCAATACTGAA-TGTTTATAACA-----TATTTTTAG-TTAAAAAATAaaa
gi|13 : CCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GTACTCCTAT-CA-GTGCT-GTG--CCT----------G-TATTAACTAGTTACTTTAGT-GCAAA--TCAACACTG-A-TGTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|14 : A-TCAATAA--CGTTAATGA--CA-CTTTT-ATTACCCTAACATAAG-CAAGC------A-A--TTGAC-CTTC-TAATCA-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TGTTGCACC-C
gi|15 : AAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTAT-CACGTACT-GTG--CCTTTTACATATTA-TATTATCTCCTTACTTTAGT-GCAAA--TCAATACTG-A-TGATa
gi|16 : AAGT-TTAAACCTG-AATGGA-GCAAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACTAA-CATTTACTGGACGGCGAA-ACA-CA-AC-CA----GCCTAACCTGATGTAAAACTCAG-----TCAACGACTTGCTAGA
gi|18 : cATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTacatcatgtacgtt
gi|19 : TTTG-TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
gi|2 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTTAAAAAAAAAAA--------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-CTGCACC-CG-----CTGA-TTGAT-TAATGACG-CCGACAA-GAATGC-GAGCAGCATGATAATCCCA-T--T-GAGTAT-ACGAGTCTCACTTACTCCATATTCCA-AAT-CGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGT-ATATAGCGAACTA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GCAAAAAAAT-A-----------A-------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGTCGAACACA-CA-CC-CA----GCCTAG---------------A-------CAATGACTTGCTAGATTTTTGAACGT-AATTGTTTTA-TAT-T-AAAAAAAGTA-TT-TT-ATTGCAATT-AAT-AAAATGAATAT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AAGATAA---TGAATAATT-ATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTAT-TAGTTACTTTTGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TT-AA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--TG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATAT---ATATATATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATTAAATACATGTT-GTA-TTTTTATTT----G---TGAA--GT-ATATATTC--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC--G-TCATTGG-GAT-GACA-T--T-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A----TTT-CAAAATTCGTAAAAAAAAAAAT--------T-GT-A-T--AAAA-CA-AATTTT-A-TA-AGATT-A-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGA--CAGCTTTT-ATTAC-----------------------A-A--TTGACTACGCCTAATCG-TC--GATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TCTTGCACCGCG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGAT-ATCCCATT--TTGAGTATCAGGAGTCTCACTTACTCCA-A------AAT-CGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGT-A-ATAGCGAACTATTT-------TTTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-AT-AACCT-GAATGGAGGCAAAAAAAA-A-----------AAAAAAAAGGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACAC-AATGTCAACATGAGACAG--AAG-AC-ACGTGTCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CGACTTGCCTAG---------------A------ACATCAATGTAC--G---TTTGAGCGT-AGTTGATTTATTTT-T-AAAAAATGTA-TT-TT-ATTGCATTT-AATAAAAATGAA-ATAA-ATATTCTG--------CCATAAAAACACAACGACAAGATAAAACTGAATAGTATTTTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AAATTAT-CACGTACT-GTG--CCTT-------TTA-TATTATCTAGTTACTTTAGT-GCACA--TC-ATACTG-A-TGATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATA-TTTATTTAAA-GGTGTCAACTCCAAATAATAA-TCGACAACAGTCAACGTA-TAGGA-GTTATTG-CA-CTAATATTTTAATATAATAATGCACAGTTT--GACAA--TCGTAGC--ATTATCA----A-TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTTG-TTGATTAGTG-TGCAAAAA--AAATATCA----TCTGTAATGTA--CA--------------GTATTGTAGTGCTAAAAATAAAGAATTATA---------AAATT-AATGCATGTTCGTC-TTTTTA-TTTATAG---TGAACGGT-ATATATTCC-TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT--G-TCAT-GGCGATTGGAA-T--TTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAA-TTTTTCAAA-TTCGTAAAACAAAAAAAT-------T-GTAAGTG--AAA-CA-AATTTTAAATA-AGATT-ATATCTCTAA--TCCAAC-A-TCAATAA--CGTCGATGA--C--CTTTTAATTACTTAAACACACA-CA-----------A--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCG-TT--C-TTGCAAC-CACCGCTTGGA-TTGAT-T-ATGACG-CCGACAAGCAATGC-GAGCAGAATGA-AATCC---------------AC-AGT-TCACTTACTCC-TATTCCATCAT-CGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTGA-T-ATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG--CAG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GC-AAAAAAA-A-----------AAAAAAAAGGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGAA---C-CCACGA-ACAG--AAGTAA-ACGTGCC-TGACTAA-CATCTACGGGATGGCCAA-ACAGCAGAC-CA----GCCT-----------------AG-----ACAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-TTT-T--AAAAAAGTATTT-TT-ATTGCA-TT-AAT-AAAAT
gi|5 : TTC-AAT-AAGGTGAA-AA-ATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AAGA-AA---TGAATAATTTATTCGAGTGTAG-A-GTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAAAGTAAA-TTAT-CACGTACTAGTG--CCTTTAA-ATATTA--AT-ATATAGTTTATTTTGT-GCAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT--TTTA-TTAAA-GGTGGCGACGCCAAAT-AT-A-TATACAACAGTCAA-GGA-TAGGC-GTTATTG-CAGCT-ATATTTTAATATAATAATGCACAGTTTTGACCAA--TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--TG--TGATTAGTG-TGC-AAAGAAAAATC--A----TCTGT-AATTAATCATA----AT---TATGT--TGTAGTGCT-GAAATAAAGAC-TATA---------AAATT--ATACATGTT-GTATTTTTTATTTTG-AGAATTTAG--GT-ATATAT--G-TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|6 : atTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AGTCTAGACAACAACTTGCTAGATTTTTGAACAT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TC-ATTGCATT--AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAA-TTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AAATTAT-CACGCACT-GTG--CCTTTAACATATTA-CATTATCTAGTTACTTTTGT-GCAAA--TCAATA
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTC--GGTCATTGGCGATTGAAA-TCTT-AGAAATTGACAA-TAG--TATGCAA--CACCG-TTC-TCACC-A----AAAATTTT-CAAA-TTGCTAAAAAAAAAAAAAAAAATATT-AT-AGTGAAAAAACACAATTTT-AATATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGA--CA-CTTT--ATTACCTTAACACAAAGCAATT------ACA---------CGC-TAATCG-TC--GATAATAA-T-GTCCAT-G-TT
gi|8 : -T--T-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGA-TTTT-CAAA-TT------GAGAGAAAAA-------C------------A-CA-AATTTTTAATA-AGATT-A-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-C-TTT-ATTACCTTAACACAAG-TA-----------A--TTGAC--TGC-TAACCGATCG-GATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTG-TTTGT-TCGCACC-CG----CTTGATTTGAT-TAATGACGACGGACAAAAA
gi|9 : ATAATAATGCACAGTTTTGA-CAAAT-AGTAGC--ATTA-CAAATAA-TTGTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATT----------------AATC--A----TCTGT-A-----------------------------AGTGTT-GAAATAAAGA---ATA---------AAATT-AATACAT-TT-GT--CTTTTATTTTATAG---TGAAG-GT-AT-TATTTATTCGTA-TGC-A-AAGTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCT
Alignments
lowQualScore : 11 1111 333333333333333333 1 66666666666666 11 11 2222 22222 222222 111 1 1 111 3333333333 1 1 1 11 111 1 1 2 1 3333333333333333333333 2222 1 111 11 1111 666666666666666666666666 1 1 111 111 1 2222 11111 11111 1 55555555555555 11 1 11 1 111 1 1 11 1 1 1 111 11 1 11 1111111 7777777777777777777777777777 111 333333333 11 1111111 22 11
lowQualScore : 8 11 8 0 0 6 99 6 99 99 1 6 4444 1 6 6 6 2 888888888888888888 6 6 3 6 6 6 99 5 77 1 77 5 5 5 11111111111111 33 5 5 11 5 5 5 5 5 5 5 0000 5 77777 6 6 6 1 8 1 11 111111 8 11 0 66 8 8 111 0 0 777 1 7777777777 3 0 0 0 22 777 0 1 3 0 0 5 8 0 6 8 0 8888888888888888888888 0 5 0 8 0 8 1111 0 777 3 6 33 3 8 0 8 6 6 6 6 4444 000000000000000000000000 66 0 8 5 8 8 88 8 8 8 3 88 6 1 8 8 8 8 8 8 0 0 444 0 0 8 8 0 8 8 11 5 8 444 5 5 66 5 0 2222 5 2 5 66 55555 5 0 1 5 66 5 5 99999 6 0 2 88888888888888 6 33 0 33 55 0 111 1 0 0 22 0 0 0 0 5 222 11 8 11 8 0 8 8 8 8 0 8 8 8 6 44 6 6 6 99 4444444 8888888888888888888888888888 6 333 333333333 6 6 33 3333333 22 6 11 5 3 5 5 66 66 77 5
lowQualScore : . .. . . . . .. . .. .. . . .... . . . . . .................. . . . . . . .. . .. . .. . . . .............. .. . . .. . . . . . . . .... . ..... . . . . . . .. ...... . .. . .. . . ... . . ... . .......... . . . . .. ... . . . . . . . . . . . ...................... . . . . . . .... . ... . . .. . . . . . . . . .... ........................ .. . . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . .. . . ... . . .. . . .... . . . .. ..... . . . . .. . . ..... . . . .............. . .. . .. .. . ... . . . .. . . . . . ... .. . .. . . . . . . . . . . . .. . . . .. ....... ............................ . ... ......... . . .. ....... .. . .. . . . . .. .. .. .
lowQualScore : 0 00 0 8 8 7 22 7 22 22 0 7 2222 7 7 7 7 5 333333333333333333 7 7 3 7 7 7 22 7 99 7 99 7 7 7 66666666666666 11 0 0 99 0 0 0 0 7 7 7 3333 7 77777 7 7 7 7 0 4 66 444444 0 66 8 22 0 0 888 0 8 555 0 2222222222 2 0 0 0 55 000 0 0 2 0 0 0 0 8 4 0 8 8888888888888888888888 8 6 8 0 8 0 2222 5 555 2 5 88 2 0 8 0 7 7 7 7 2222 222222222222222222222222 66 8 0 8 0 0 88 0 0 0 5 33 7 7 0 0 0 0 0 0 0 8 000 8 8 0 0 8 0 0 66 6 0 444 7 0 99 0 0 0000 0 5 0 99 22222 0 1 0 0 99 7 7 55555 7 0 5 88888888888888 5 22 0 22 00 0 000 2 0 0 00 0 0 0 8 6 000 00 0 66 0 0 0 0 0 0 8 0 0 0 7 00 7 7 7 22 3333333 3333333333333333333333333333 7 000 333333333 7 7 88 5555555 55 7 44 0 2 0 0 99 99 99 7
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AG-----ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( family-689 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AG-----ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTCTCG-T-ATTGGCGATTGAAAAT--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------TTGT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAA-TTGACCACGC-TCATCG-TCACGATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCG-TTC-T-TTGC-CC-CG--GC-TTGA-TTGATGTAAT-ACG-CCGACAAAGAATGCTGAGCAGCATGATAATCCCA-AAATTGAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTAATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTA-ATAGCGAACGA--T-------TTT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GCAAAAAAAT-A-----------AA------GGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAAA---CAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGATGTCGAA-ACA-CA-ACGCA----GCC------------------AG-----ACAATGACTTGCTAGATTTTTG-ACGT-AATTG--TTA-TTTATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--GAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACC-AAAAACATGATAA---TGAATAATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGG-TT-AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGA-TTTGAT-ATAA--TTT-ATGGTAAA-AT--AATTATCCACGTACT-GTGGCCCTTTAACATATAA-TATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTA-TTAAAGGGTGGCAA--CCAAAT-AT-ATTTTACAACAGTCAA-GGATTAGGAGGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACA-TTGTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGT-ATGTA--TATATTATAT---TATGTACTGTAGTGCT-GAAATAAAGAA--ATAT--------AAATT-AATACATGTT-GTA-TTTTAATTTT---G---TGAAG-GT-ATATATTCGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|10 : A--TTGAC-ACGC-TAATCG-TC--GATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGATT--C-TTGCACC-CG--G-CTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-CAGCAGTATGATAATCCCA-T--TTGAATAT-ACGAGTCTCACTTATTCCATATTCCATAAT-CGTCA-TTCAATTT--AC
gi|11 : caTT-ATACA-TTG-TTAATTAGTG-CTC-AAAG--AAA-A--A----TC------------ATA----------------TGTAGAGCC-GAAATAAAGAA-TATAGAATAAAGTAAATT-AACACATGTC-----TTTTTATTTTATAG---TGAA--GTTATACATTCG-TCGTA-CGCAA-AACTG-G--CTAA--TGGT
gi|12 : CGTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT----CTAT-CA-GTACT------CCT-------ATCAGTG----CTTGTTACTTTAGT-GCAAA--TCAATACTGAA-TGTTTATAACA-----TATTTTTAG-TTAAAAAATAaaa
gi|13 : CCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GTACTCCTAT-CA-GTGCT-GTG--CCT----------G-TATTAACTAGTTACTTTAGT-GCAAA--TCAACACTG-A-TGTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|14 : A-TCAATAA--CGTTAATGA--CA-CTTTT-ATTACCCTAACATAAG-CAAGC------A-A--TTGAC-CTTC-TAATCA-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TGTTGCACC-C
gi|15 : AAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTAT-CACGTACT-GTG--CCTTTTACATATTA-TATTATCTCCTTACTTTAGT-GCAAA--TCAATACTG-A-TGATa
gi|16 : AAGT-TTAAACCTG-AATGGA-GCAAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACTAA-CATTTACTGGACGGCGAA-ACA-CA-AC-CA----GCCTAACCTGATGTAAAACTCAG-----TCAACGACTTGCTAGA
gi|18 : cATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTacatcatgtacgtt
gi|19 : TTTG-TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
gi|2 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTTAAAAAAAAAAA--------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGACT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-CTGCACC-CG-----CTGA-TTGAT-TAATGACG-CCGACAA-GAATGC-GAGCAGCATGATAATCCCA-T--T-GAGTAT-ACGAGTCTCACTTACTCCATATTCCA-AAT-CGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGT-ATATAGCGAACTA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GCAAAAAAAT-A-----------A-------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGTCGAACACA-CA-CC-CA----GCCTAG---------------A-------CAATGACTTGCTAGATTTTTGAACGT-AATTGTTTTA-TAT-T-AAAAAAAGTA-TT-TT-ATTGCAATT-AAT-AAAATGAATAT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AAGATAA---TGAATAATT-ATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTAT-TAGTTACTTTTGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAA--GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--TG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATAT---ATATATATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATTAAATACATGTT-GTA-TTTTTATTT----G---TGAA--GT-ATATATTC--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC--G-TCATTGG-GAT-GACA-T--T-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A----TTT-CAAAATTCGTAAAAAAAAAAAT--------T-GT-A-T--AAAA-CA-AATTTT-A-TA-AGATT-A-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGA--CAGCTTTT-ATTAC-----------------------A-A--TTGACTACGCCTAATCG-TC--GATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TCTTGCACCGCG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGAT-ATCCCATT--TTGAGTATCAGGAGTCTCACTTACTCCA-A------AAT-CGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGT-A-ATAGCGAACTATTT-------TTTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-AT-AACCT-GAATGGAGGCAAAAAAAA-A-----------AAAAAAAAGGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACAC-AATGTCAACATGAGACAG--AAG-AC-ACGTGTCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CGACTTGCCTAG---------------A------ACATCAATGTAC--G---TTTGAGCGT-AGTTGATTTATTTT-T-AAAAAATGTA-TT-TT-ATTGCATTT-AATAAAAATGAA-ATAA-ATATTCTG--------CCATAAAAACACAACGACAAGATAAAACTGAATAGTATTTTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AAATTAT-CACGTACT-GTG--CCTT-------TTA-TATTATCTAGTTACTTTAGT-GCACA--TC-ATACTG-A-TGATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATA-TTTATTTAAA-GGTGTCAACTCCAAATAATAA-TCGACAACAGTCAACGTA-TAGGA-GTTATTG-CA-CTAATATTTTAATATAATAATGCACAGTTT--GACAA--TCGTAGC--ATTATCA----A-TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTTG-TTGATTAGTG-TGCAAAAA--AAATATCA----TCTGTAATGTA--CA--------------GTATTGTAGTGCTAAAAATAAAGAATTATA---------AAATT-AATGCATGTTCGTC-TTTTTA-TTTATAG---TGAACGGT-ATATATTCC-TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT--G-TCAT-GGCGATTGGAA-T--TTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAA-TTTTTCAAA-TTCGTAAAACAAAAAAAT-------T-GTAAGTG--AAA-CA-AATTTTAAATA-AGATT-ATATCTCTAA--TCCAAC-A-TCAATAA--CGTCGATGA--C--CTTTTAATTACTTAAACACACA-CA-----------A--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCG-TT--C-TTGCAAC-CACCGCTTGGA-TTGAT-T-ATGACG-CCGACAAGCAATGC-GAGCAGAATGA-AATCC---------------AC-AGT-TCACTTACTCC-TATTCCATCAT-CGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTGA-T-ATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG--CAG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GC-AAAAAAA-A-----------AAAAAAAAGGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGAA---C-CCACGA-ACAG--AAGTAA-ACGTGCC-TGACTAA-CATCTACGGGATGGCCAA-ACAGCAGAC-CA----GCCT-----------------AG-----ACAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-TTT-T--AAAAAAGTATTT-TT-ATTGCA-TT-AAT-AAAAT
gi|5 : TTC-AAT-AAGGTGAA-AA-ATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AAGA-AA---TGAATAATTTATTCGAGTGTAG-A-GTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAAAGTAAA-TTAT-CACGTACTAGTG--CCTTTAA-ATATTA--AT-ATATAGTTTATTTTGT-GCAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT--TTTA-TTAAA-GGTGGCGACGCCAAAT-AT-A-TATACAACAGTCAA-GGA-TAGG-CGTTATTG-CAGCT-ATATTTTAATATAATAATGCACAGTTTTGACCAA--TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--TG--TGATTAGTG-TGC-AAAGAAAAATC--A----TCTGT-AATTAATCATA----AT---TATGT--TGTAGTGCT-GAAATAAAGAC-TATA---------AAATT--ATACATGTT-GTATTTTTTATTTTG-AGAATTTAG--GT-ATATAT--G-TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|6 : atTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AGTCTAGACAACAACTTGCTAGATTTTTGAACAT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TC-ATTGCATT--AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAA-TTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AAATTAT-CACGCACT-GTG--CCTTTAACATATTA-CATTATCTAGTTACTTTTGT-GCAAA--TCAATA
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTC--GGTCATTGGCGATTGAAA-TCTT-AGAAATTGACAA-TAG--TATGCAA--CACCG-TTC-TCACC-A----AAAATTTT-CAAA-TTGCTAAAAAAAAAAAAAAAAATATT-AT-AGTGAAAAAACACAATTTT-AATATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGA--CA-CTTT--ATTACCTTAACACAAAGCAATT------ACA---------CGC-TAATCG-TC--GATAATAA-T-GTCCAT-G-TT
gi|8 : -T--T-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGA-TTTT-CAAA-TT------GAGAGAAAAA-------C------------A-CA-AATTTTTAATA-AGATT-A-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-C-TTT-ATTACCTTAACACAAG-TA-----------A--TTGAC--TGC-TAACCGATCG-GATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTG-TTTGT-TCGCACC-CG----CTTGATTTGAT-TAATGACGACGGACAAAAA
gi|9 : ATAATAATGCACAGTTTTGA-CAAAT-AGTAGC--ATTA-CAAATAA-TTGTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATT----------------AATC--A----TCTGT-A-----------------------------AGTGTT-GAAATAAAGA---ATA---------AAATT-AATACAT-TT-GT--CTTTTATTTTATAG---TGAAG-GT-AT-TATTTATTCGTA-TGC-A-AAGTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCT
blockSeqs : A . G . CT T GA AA G . GGAA A A T A C AAAAATATTATAGTGA A C A T T T AT . AA T CT G A G ATTCATCTTACAAA TA C A G G . C C . A A TGT G CCGCT T . A A . T TA TTTT C AT AT . G TTA . A AT T TTGTTTTG T G G . C TGG A C A C C C . A G ATATAAAAAAAATTAAAAAAAA A . G AAAA A TGT A G . T . . C G G . ACTT AACCTGATGTAAAACTCAG TT A T T . A T . . A T A A T A T G A C C AAC G . T . TT T A AT . A AT A C ACTC . C A . TTTAC G A . CA A . TAATT T A C AATGGTCCACATAA G A T A CG A AA T C . AG . G A A ATT AA T AA T G . . T T G G A . TT . . A AA TCA ATGTACATATATATATATGTAC A ATT GAATAAAGT A C AT GAGAAT CG T AT . A T . AC GC AC C
blockSeqs : . . . . . . . . G . . A . . . C TTGTAAGTG . . T . . . . . . C . . . . ATTACA A . . . . . . . . . . TG . GCC . . . A . C TA TTT . AT AT . . T . G A T TTT T . . . C T . A A . G C . G . AAAAAAAAAA A . . . G . A G . T . . . . . . . AGAGTCTAG TT . A . . A . . . T T . A . . . . . . C . . . . . TT G . AT . . . . A AAAA . C . . TTAAC . A . . . . TAATT . . C . A A . A CT . A C . . A . . . A AT . . AA . G . . . . . . . . T . . . . A AATTAATCATAATTATGT . AT . . . A ATAG G . G . A . . . . . .
blockSeqs : . . . . . . . . G . . A . . . C TGTAGTGA . . . . . . . . . C . . . . AGCAA C . . . . . . . . . . TC . GC . . . G . T T TT . A A . . T . C T A T T . . . . . . G A . . . . A . AAAAAAAAAA A . . . . . . . . . . . . . . . . AGA A . T . . A . . . T T . A . . . . . . . . . . . . T T . A . . . . . AAA . C . . TTAAC . A . . . . TA . . C . . . . . CG . A A . . C . . . C T . . A . G . . . . . . . . T . . . . A AATGTACAGTAT . AT . . . C ATAG . . G . A . . . . . .
blockSeqs : . . . . . . . . A . . G . . . G TGTAT . . . . . . . . . C . . . . AA A . . . . . . . . . . C . C . . . A . A A . . T . . . T . . . TAA . . . . . . . . . . AGA . . . . . . . . . T C . G . . . . . . . . . . . . T T . . . . . . . AAA . C . . TTAA . T . . . . . . . T . . A . . . . . . . . . . . . . . . A ATA . CT . . . . ATAG . . G . A . . . . . .
blockSeqs : . . . . . . . . . . . . . AC . . . . . . . . . T . . . . A A . . . . . . . . . . T . . . . . . . . . . . AG . . . A . . . . . AAA . C . . T . A . . . . . . . . . . . . A A . . . . . . G . . C . A . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . C . . . . . . AAA . . . . . . T . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . . .
blockSeqCons : ** TGTAGTGA********** ATTAA********* A* ** T*** GC*** TA TT**** AT T** AAAAAAAAAA************ AGACAG****************** A* T* A** AAA* ** AT* A****** ATTACATATGTAC*************** AT* ********* ATAG*** ** G*
originalCons : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAA-------T-GT-AGTGAAAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATT------ACA--TTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GCCTTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA-T--TTGAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAG---------------AG-----ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAAATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--A----TCTGT-ATGTA--CATA----AT---TATGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
finalCons : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAATGTAGTGA----------AAAA-CA-AATTTT-AATA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTT-ATTACCTTAACACAAA-CAATTAA---------TTGACA-CGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TTT---TTGCACC-CGGC---TTGA-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCATT----GAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--T-------TTTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAAAAAAAAAAA------------GGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACAG--AAGTAA-ACGTGCCATGACTAA-CATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTAGACAG------------------ACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-TA-AAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATTA--TTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GTAAA-TTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAAT-AGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATAA------TCTGTATTACATATGTAC---------------TGTAGTGCT-GAAATAAAGAAT-ATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Alignments
lowQualScore : 11 1111 33333333333 333333333333333 11 11 2222 111 2222222 1 111 1 1 111 11 3333333 1 1 1 1 111 1 1 2 1 1 33333333333 2222 1 111 11 1111 77777777777777777 1 1 1 111 1 333 1 1111 11111 11111 1 55555555555555 11 1 1 1 111 1 1 11 1 1 1 1 11 1 11 888888888888888888888888888888888888888 111 333333333 11 1111111 22 11
lowQualScore : 8 11 8 0 0 6 99 6 99 99 1 6 4444 1 6 6 6 2 44444444444 99 2 3 6 6 6 6 6 6 6 99 5 77 1 77 5 5 888888888888888 0 00 5 5 11 5 5 5 5 5 5 5 0000 5 000 6 6 6 6 6 8 1 0 0 4444444 8 11 0 8 8 111 0 0 777 1 33 2222222 3 0 0 0 0 2 777 0 1 3 0 0 5 8 0 6 8 0 8 88888888888 0 1 0 5 0 8 0 8 1111 0 777 3 6 33 3 8 0 8 6 6 6 6 4444 88888888888888888 66 0 8 5 8 8 88 8 8 8 1 6 6 1 8 8 8 8 8 8 0 0 444 0 8 8 0 8 8 11 5 8 222 5 5 66 5 0 0000 5 2 5 66 55555 5 0 1 5 66 5 5 99999 6 0 2 88888888888888 6 33 0 3 0 55 0 111 1 0 0 22 0 0 0 0 44 5 6 11 8 11 8 0 8 8 8 8 0 8 8 8 6 44 6 6 6 99 99 333333333333333333333333333333333333333 7 6 333 333333333 6 6 33 3333333 22 6 11 5 3 5 5 66 66 77 5
lowQualScore : . .. . . . . .. . .. .. . . .... . . . . . ........... .. . . . . . . . . . .. . .. . .. . . ............... . .. . . .. . . . . . . . .... . ... . . . . . . . . . ....... . .. . . . ... . . ... . .. ....... . . . . . . ... . . . . . . . . . . . . ........... . . . . . . . . .... . ... . . .. . . . . . . . . .... ................. .. . . . . . .. . . . . . . . . . . . . . . . ... . . . . . . .. . . ... . . .. . . .... . . . .. ..... . . . . .. . . ..... . . . .............. . .. . . . .. . ... . . . .. . . . . .. . . .. . .. . . . . . . . . . . . .. . . . .. .. ....................................... . . ... ......... . . .. ....... .. . .. . . . . .. .. .. .
lowQualScore : 0 00 0 8 8 7 22 7 22 22 0 7 2222 7 7 7 7 5 55555555555 22 5 2 7 7 7 7 7 7 7 22 7 99 7 99 7 7 111111111111111 1 11 0 0 99 0 0 0 0 7 7 7 3333 7 222 7 7 7 7 7 0 4 8 8 6666666 0 66 6 0 0 888 0 8 555 0 88 5555555 2 0 0 0 0 5 000 0 0 2 0 0 0 0 8 4 0 6 0 00000000000 8 0 8 6 8 0 8 0 2222 5 555 2 5 88 2 0 8 0 7 7 7 7 2222 77777777777777777 66 8 0 8 0 0 88 0 0 0 7 7 7 7 0 0 0 0 0 0 0 8 000 6 0 0 8 0 0 66 6 0 888 7 0 99 0 0 2222 0 5 0 99 22222 0 1 0 0 99 7 7 55555 7 0 5 88888888888888 5 22 0 2 0 00 0 000 2 0 0 00 0 0 0 8 66 6 0 00 0 66 0 0 0 0 0 0 8 0 0 0 7 00 7 7 7 22 22 555555555555555555555555555555555555555 8 7 000 333333333 7 7 88 5555555 55 7 44 0 2 0 0 99 99 99 7
consensus : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAA--------T-GTA-GTGAAAAA-CA-AATTTT-AA-TA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTTA-TTACCTTAACACAAA-CAATT---------AATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GC-TTG-A-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA---TT--GAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--TT-------TTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACA--GAAGTAA-ACGTGCCATGACT-AACATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GA---------CAGACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GT-AA-ATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--ATC------------TGT-AT---------TA--TA-TA--TGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
Reference ( family-689 ) : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAA--------T-GTA-GTGAAAAA-CA-AATTTT-AA-TA-AGATT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTTA-TTACCTTAACACAAA-CAATT---------AATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-TTGCACC-CG--GC-TTG-A-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGCATGATAATCCCA---TT--GAGTAT-ACGAGTCTCACTTACTCCATATTCCATAAT-CGTCA-TTCAATTT--ACGA-TCATNGCAACCACACTGT-A-ATAGCGAACNA--TT-------TTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAANCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAACCTGGAATGGA-GCAAAAAAAA-A-----------AAAAAAAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACGAA---CAACATGAGACA--GAAGTAA-ACGTGCCATGACT-AACATCTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GA---------CAGACAACGACTTGCTAGATTTTTGAACGT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TT-ATTGCATTT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAATTTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GT-AA-ATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTATCTAGTTACTTTNGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TTAAA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAA-TAGTAGC--ATTA-CAAATGA-TTGTGAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATTAGTG-TGC-AAAG--AAATA--ATC------------TGT-AT---------TA--CA-TA--TGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATT-AATACATGTT-GTA-TTTTTATTTTATAG---TGAA--GT-ATATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|1 : AGTGATTTAGCCA-GCGCTCGCCTTTTTCTCG-T-ATTGGCGATTGAAAAT--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACCGA----AAA-TTTT-CAAA-TTCGTAAAAAAAAAAAAAT------T-GTA-GTGAAAAA-CA-AATTTT-AA-TA-AGACT-A-ATCTCTAA--TCCAACAAATCAATAA--CGTCAATGA--CA-CTTTTA-TTACCTTAACACAAA-CAATTCATCTTAC-AATTGACCACGC-TCATCG-TCACGATA-TTA-TTGTCCAT-G-TTGTCCGTTGCG-TAATTCG-TTC-T-TTGC-CC-CG--GC-TTG-A-TTGATGTAAT-ACG-CCGACAAAGAATGCTGAGCAGCATGATAATCCCAAAATT--GAGTAT-ACGAGTCTCACTTACTC-ATATTTCCTAATTCGTCA-TTCAATT---ACGAATCAT-GCAACCACACTGTTA-ATAGCGAACGA--TT-------TT-GTTCGTCA-CGTGACC-GTTAGTACGGCCAGT--CC-AGAGTAAACCAAATACCCAAAATAA-TCACGGG-CCGACCGT-CTGCAGAAAT-TAAGTATTAAACCTGGAATGGA-GCAAAAAAAT-A-----------AA------GGCAATCC-GAC-AAAACTTTGAGACCAACTTGGGACAATTAGCAGCTGGT-TC----CACAAA---CAACATGGAACAGGGAAGTAACAC-TGCCATGACTAAACATCTACGGGATGTCGAA-ACA-CA-ACGCA----GC------------------CAGACAATGACTTGCTAGATTTTTG-ACGT-AATTG--TTA-TTTATAAAAAAAAGTA-TTGTTAATTGCATTTAAAT-AAA--GAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACC-AAAAACATGATAA---TGAATAATTTATTCGA-TGTAGCAAGTC-CGCACTTGAGG-TT-AAAAAAAAATTCATTTCTGTAATAAAACATGTACACTGA-TTTGAT-ATAA--TTT-ATGGTAAA-AT--A-ATTATCCACGTACT-GTGGCCCTTTAACATATAA-TATTATCTAGTTACTTTTGTGGCAAA--TCAATACTG-ATTGATTATAAC-TAATTTATTTTTAG-TTAAAAAATACT-T-T--------------TTCAGCATGATATTTTA-TTAAAGGGTGGCAA--CCAAAT-AT-ATTTTACAACAGTCAA-GGATTAGGAGGGTATTGCCA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTT-AAAATGA-TTGTGAAT-TGATGACGCC-A-TAAACT-TTAT-TT-ATGTTGATACA-TTGTTTGATTAGTGTTGC-AAAG--AAATA--ATCATTCTGTATGTATAT-AT---------TA--TATTA--TGTACTGTAGTGCT-GAAATAAAGAA--ATAT--------AAATT-AATACATGTT-GTA-TTTTAATTTT---G---TGAAG-GT-ATATATTCGTTCGTACCGCAA-AAGTGCA--CTAA--TGGTCT--AAAAATCCTGG-CTAAATCCCT
gi|10 : ---------AATTGAC-ACGC-TAATCG-TC--GATAATTA-C-GTCCAT-G-TTGTC-GTTGCG-GTATTCGATT--C-TTGCACC-CG--GC-TTG-A-TTGAT-TAATGACG-CCGACAAAGAATGC-CAGCAGTATGATAATCCCAT--TT--GAATAT-ACGAGTCTCACTTATTCCATATTCCATAAT-CGTCA-TTCAATTT--AC
gi|11 : cTT-ATACA-TTG-TTAATTAGTG-CTC-AAAG--AAA-A--ATC--------------------------------A-TA--TGTA-----GAGCC-GAAATAAAGAA-TATAGAATAAAGTAAATT-AACACATGTC-----TTTTTATTTTATAG---TGAA--GTTATACATTCG-TCGTA-CGCAA-AACTG-G--CTAA--TGGT
gi|12 : CGTAATAAAAT-TGCAAAATGATTTTGAT-ATGA--TTT-ACGGTAAACGT-----CTAT-CA-GTACT------CCT-------ATCAGTG----CTTGTTACTTTAGT-GCAAA--TCAATACTGAA-TGTTTATAACA-----TATTTTTAG-TTAAAAAATAaaa
gi|13 : CCGTAATAAAAT-TGCAAAATGATTTTGAT-AT-----CT-ATC----A-GT-ACTCCTAT-CA-GTGCT-GTG--CCT----------G-TATTAACTAGTTACTTTAGT-GCAAA--TCAACACTG-A-TGTTTATAACA-----TATTTTTAG-TTAAAAAA
gi|14 : A-TCAATAA--CGTTAATGA--CA-CTTTTA-TTACCCTAACATAAG-CAAGC---------AATTGAC-CTTC-TAATCA-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TGTTGCACC-C
gi|15 : AAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-GT-AA-ATTAT-CACGTACT-GTG--CCTTTTACATATTA-TATTATCTCCTTACTTTAGT-GCAAA--TCAATACTG-A-TGATa
gi|16 : AAGT-TTAAACCTG-AATGGA-GCAAAAAAAATATAAAAAAAATTAAAAAAAAGGCAATCCAGACCAAAACTTTTAGACCAACTTGGGACAATT-GCAGCTGGT-
gi|17 : -ACGTGCCACGACT-AACATTTACTGGACGGCGAA-ACA-CA-AC-CA----GCCTAACCTGATGTAAAACTCAGTCAACGACTTGCTAGA
gi|18 : cATATTCG-TCGTA-CGCAA-AAGTG-A--CTAA--TGATCT--AAAAATCCTGG-CTAAATCCCTacatcatgtacgtt
gi|19 : TTTG-TCGTA-CGTAA-AAGTG-A--CTAA--TGGTCC--AAAAATACTAG-CTAAATCgac
gi|2 : AGTGATTTAGCCA-GCGCTCGCCTTTTTC--G-TCATTGGCGATTGAAA-T--T-AGAAATTGACGAGTGA--AGTGCAA--CATCGATTCGTCACC-A----AAA-TTTT-CAAA-TTCGTTAAAAAAAAAAA--------T-GTA-GTGAAAAA-CA-AATTTT-AA-TA-AGACT-A-ATCTCTAA--TCCAACAA-TCAATAA--CGTCAATGA--CA-CTTTTA-TTACCTTAACACAAA-CAATTCATCTTACAAATTGAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--T-CTGCACC-CG-----CTG-A-TTGAT-TAATGACG-CCGAC-AAGAATGC-GAGCAGCATGATAATCCCA---TT--GAGTAT-ACGAGTCTCACTTACTCCATATTCCA-AAT-CGTCA-TTCAATTT--ACGA-TCATAGCAACCACACTGT-ATATAGCGAACTA--TT-------TTTGTTCGTCA-CGTGACC-GT-AGTACG-CCAGT--CC-AGAGTAAACCAAATACCCAAAATAAATCACGGG-CCGACCGT-CTGCAGAAATCTAAGT-TTAAAC--GAAATGGA-GC-------A-A-----------AAAAATAAGGCAATCCAGACCAAAACTTTGAGACCAACTTGGGACAATT-GCAGCTGGT-TC----CACAAA---CAACATGAGACA--GAAGTAA-ACGTGCCATGACT-AACATCTACGGGATGTCGAACACA-CA-CC-CA----GCCT-----------------AGACAATGACTTGCTAGATTTTTGAACGT-AATTGTTTTA-TAT-T-AAAAAAAGTA-TT-TT-ATTGCAATT-AAT-AAAATGAATAT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGA-AAGATAA---TGAATAA-TTATTCGA-TGTAG-GAGTC-CG-ACTTGAGGTTT-AAAAAAAAATT-ATTTCTGTAATAAAAC-TGTAAACTGATTTTGAT-ATAA--TTT-ATGGTAAA-ATAAA-ATTAT-CACGTACT-GTG--CCTTTAACATATTA-TATTAT-TAGTTACTTTTGT-GCAAA--TCAATACTG-A-TGATTATAACATAATTTATTTTTAG-TTAAAAAATACT-TCT--------------TTCAGCATGATA-TTTA-TT-AA-GGTGGCAACGCCAAAT-AT-A-TTTACAACAGTCAA-GGA-TAGGAGGTTATTG-CA-CT-ATATTTTAATATAATAATGCACAGTTTTGAACAAATTAGTAAC--ATTA-CAAATGATTTGTGAAT-TGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA--TG-TTGATTAGTG-TGC-AAAG--AAATA--ATC------------TGT-ATGTACATATATA--TA-TA--TGTACTGTAGTGCT-GAAATAAAGAA-TATA---------AAATTAAATACATGTT-GTA-TTTTTATTT----G---TGAA--GT-ATATATTC--TCGTA-CGCAA-AAGTG-A--CTAA--TGGTCT--AAAAATCCTGGCCTAAATCCCT
gi|3 : AGTGATTTAGCCA-GCGCTCGC-TTTTTC--G-TCATTGG-GAT-GACA-T--T-AGAA-TTGACGAGTGA--AGTGCAAAACATCGATTCGTCACC-A----A----TTT-CAAAATTCGTAAAAAAAAAAAT--------T-GTA--T--AAAA-CA-AATTTT-A--TA-AGATT-A-ATCT-TAA--TCCAACAA--CAATAAAACGTCAATGA--CAGCTTTTA-TTAC--------------------------AATTGACTACGCCTAATCG-TC--GATAATAT-T-GTCCAT-G-TTGTC-GTTGCG-GTATTCG-TT--TCTTGCACCGCG--GCCTTG-A-TTGAT-TAATGACG-CCGACAAAGAATGC-GAGCAGTATGATA-TCCCA---TTTTGAGTATCAGGAGTCTCACTTACTCCA------A-AAT-CGTCA-TTAAATTT--ACGA-TCATGGCAACCACACTGT-A-ATAGCGAACTATTTT-------TTTGTTCGTCA-CGTGACCGGT-AGTACG-CCAGTGGCCAAGAGTAAAACCCATACCCAAATAAAATCACGGG-CCGACCGTCCTGCAGAAATCTAAGT-AT-AACCT-GAATGGAGGCAAAAAAAA-A-----------AAAAAAAAGGC-ATCCAGACC-AAACTTTGAGACCAACTTGGGACAATC-GCAGCTG---TCAAAACAC-AATGTCAACATGAGACA--GAAG-AC-ACGTGTCATGACT-AACATCTACGGGATGGCGAA-ACA-CA-AC-CGACTTGCCTA----GA------------ACATCAATGTAC--G---TTTGAGCGT-AGTTGATTTATTTT-T-AAAAAATGTA-TT-TT-ATTGCATTT-AATAAAAATGAA-ATAA-ATATTCTG--------CCATAAAAACACAACGACAAGATAAAACTGAATAGTATTTTCGA-TGTAG-AAGTC-CG-AC-TGAAGGTT-AAAAAAAAATT-A-TTCCGTAATAAAAC-TGT--ACTGATTTTGATAATAA--TTTAATGGTAAA-AT-AA-ATTAT-CACGTACT-GTG--CCTT-------TTA-TATTATCTAGTTACTTTAGT-GCACA--TC-ATACTG-A-TGATCATAACATA------TTTTAGTTTAAAAAATACA-TCTAATGGTCCACATAATTTAGCATAATA-TTTATTTAAA-GGTGTCAACTCCAAATAATAA-TCGACAACAGTCAACGTA-TAGGA-GTTATTG-CA-CTAATATTTTAATATAATAATGCACAGTTT--GAC-AA-TCGTAGC--ATTATCA----A-TTGTGAATGTGACGA-G-C-A-T-AACT-TTAT-TTAATGTT--TACATTTG-TTGATTAGTG-TGCAAAAA--AAATATCATC------------TGT-AA---------TG--TA-CA---GTATTGTAGTGCTAAAAATAAAGAATTATA---------AAATT-AATGCATGTTCGTC-TTTTTA-TTTATAG---TGAACGGT-ATATATTCC-TCGTA-CGC-C-AAGTG-A---TAA--TGGTCT--AAAGATCCTGG-CTAAATCC
gi|4 : AGTGATTTAGCCA-GCGCTCGCCCTTTTT--G-TCAT-GGCGATTGGAA-T--TTAGGAATTGCAAAGTGAGAAGTGCAA--CATCGATTCGTCACC-AGGAAAAA-TTTTTCAAA-TTCGTAAAACAAAAAAA--------TTGTAAGTGAAA---CA-AATTTT-AAATA-AGATT-ATATCTCTAA--TCCAACA--TCAATAA--CGTCGATGA--C--CTTTTAATTACTTAAACACACA-CAATT-------------GAC-ACGC-TAATCG-TC--GATAATTA-T-GTCCATCGCTTGTC-GTTGCG-GTATTCG-TT--C-TTGCAAC-CACCGC-TTGGA-TTGAT-TA-TGACG-CCGACAAGCAATGC-GAGCAGAATGA-AATCC----------------AC-AGT-TCACTTACTCC-TATTCCATCAT-CGTCAGTTCAATTTTAACGA-TCATCGCAAACCCACTGA-T-ATAGCGAACAA--TTGTTTTGTTTTGTTCGTCAGCGTGACT-GT-AGTACG-C-AG---CC-AGAGTAAAGCAAATACCCAAAATAAATCACGGGCCCGACCGTGCTGCAGAAAT-TAAGT-TTAAACCTGAATTGGA-GC-AAAAAAA-A-----------AAAAAAAAGGCAATC--GA-CAAAACTTTGAGAC--ACTT-GGACAATT-GC-GCTGGTGTC----CACGAA---C-CCACGA-ACA--GAAGTAA-ACGTGCC-TGACT-AACATCTACGGGATGGCCAA-ACAGCAGAC-CA----GCCT-----------------AGACAACGACATGCTAGA-ATTTGAACGTAAGTTG-TTTA-TTT-T--AAAAAAGTATTT-TT-ATTGCA-TT-AAT-AAAAT
gi|5 : TTC-AAT-AAGGTGAA-AA-ATATATTCTGCGATTTTCCCAA-TAAATA-AAAGA-AAGA-AA---TGAATAATTTATTCGAGTGTAG-A-GTCTCG-ACT-GAGGTTT-AAAAAAACATT---TTCCGTAA--AAAC-TGTACCTTGATTTTGAT-ATAAATTTT-ATGGTAAAAGT-AA-ATTAT-CACGTACTAGTG--CCTTTAA-ATATTA--AT-ATATAGTTTATTTTGT-GCAAACATCAATACTG-A--GATTA--ACATAATTTATTTTTAG-TTAAATATAACTATCT--------------TTCAGCAT-AT--TTTA-TTAAA-GGTGGCGACGCCAAAT-AT-A-TATACAACAGTCAA-GGA-TAGG-CGTTATTG-CAGCT-ATATTTTAATATAATAATGCACAGTTTTG-ACCAA-TAGTAGCAAAATA-C-AATGA-TTGTGAATGTGATGA-G-CTATTAAACTGTTATGTT-ATGTT-ATACA--TG--TGATTAGTG-TGC-AAAGAAAAATC--ATC------------TGTAAT---------TAATCA-TAATTATGTTGTAGTGCT-GAAATAAAGAC-TATA---------AAATT--ATACATGTT-GTATTTTTTATTTTG-AGAATTTAG--GT-ATATAT--G-TCGTA-CGCAATAAGTG-A--CTAA--TGGTCTACAAAAATCCTGG--TAAATCCC
gi|6 : atTACGGGATGGCGAA-ACA-CA-AC-CA----GCCTA----GAGTC------TAGACAACAACTTGCTAGATTTTTGAACAT-AGTTGTTTTA-TTT-T-AAAAAAAGTA-TT-TC-ATTGCA-TT-AAT-AAAATGAA-AT-A-ATATTCTGC-ATTTTCCCAT-AAAACA-AAAGACAAGATAA---TGAATAA-TTATTCGA-TGTAG-AAGTC-CG-ACTTGAGGTTTAAAAAAAAAAAT-ATTTCCGTAATAAAAC-TGTAAACTGATTTTGAA-ACAA--TTT-ATGGTAAA-AT-AA-ATTAT-CACGCACT-GTG--CCTTTAACATATTA-CATTATCTAGTTACTTTTGT-GCAAA--TCAATA
gi|7 : AGAGATTTAGCCAAGCGCTCGCCTTTTTC--GGTCATTGGCGATTGAAA-TCTT-AGAAATTGACAA-TAG--TATGCAA--CACCG-TTC-TCACC-A----AAAATTTT-CAAA-TTGCTAAAAAAAAAAAAAAAAATATT-ATA-GTGAAAAAACACAATTTT-AA-TATAGATTTA-CTCTCTAAATTCAAACAA-TC--CAA--CGC--ATGA--CA-CTTT-A-TTACCTTAACACAAAGCAATT---------A-----C-ACGC-TAATCG-TC--GATAATAA-T-GTCCAT-G-TT
gi|8 : -T--T-AGAAATTGATGAGTGA--AGTGCAA--CATCAATTCATCACA-A----AGA-TTTT-CAAA-TT-----GAGAGAAAAA--------C------------A-CA-AATTTTTAA-TA-AGATT-A-ATATCTAT--TCCATCAA-TCAATAA--CGTTAAAGACTCA-C-TTTA-TTACCTTAACACAAG-----T---------AATTGAC--TGC-TAACCGATCG-GATAATTAGT-ATCCAT-G-TTGTC-GTTGCGAGTATTTG-TTTGT-TCGCACC-C---GC-TTG-ATTTGAT-TAATGACGACGGACAAAAA
gi|9 : ATAATAATGCACAGTTTTGA-CAAA-TAGTAGC--ATTA-CAAATAA-TTGTAAATGTGATGA-G-C-A-TAAACT-TTAT-TT-ATGTT-ATACA-TTG-TTGATT----------------AATC--ATC------------TGT-A-----------------------------AGTGTT-GAAATAAAGA---ATA---------AAATT-AATACAT-TT-GT--CTTTTATTTTATAG---TGAAG-GT-AT-TATTTATTCGTA-TGC-A-AAGTG-AACTTAAGCTGGTCT--AAAAATCCTGG-CTAAATCCCT