lowQualScore : 22222
lowQualScore : 5 55555 3 666 3 3 3 3 3 88 4
lowQualScore : . ..... . ... . . . . . .. .
lowQualScore : 0 77777 6 000 6 6 6 6 6 66 0
consensus : NACAGACAGGCCAAAAA--ACTATATGC-C-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
Reference ( gi|9 ) : GACAAACAGGCCAAAAA--ACTATATGC-C-CTCAAA-TCTTT-GA-TTCT-G-G--GG-CATAA
gi|8 : ACATACAGGTCAAAA---ACTATATGC-C-TCTGAA-TTTTT-GA-TTCT-G-G--GG-
gi|7 : aCAGATAGGCCAAAGA---CTATACGC-C-TGCAAA-TCTTT-G--TTAT-G-A--AG-CATAgtaataaa
gi|12 : accaggtAGACAAGCCAAAAACTACAACATGC-T-CTCGAA-TCGTT-GA-TTCT-G-G--G
gi|11 : aAACGGGCCAAA-----CTAGATGC-C-CCGGAA-TCTTT-GA-TTCT-G-GA-AG-CATAa
gi|10 : atgACAGGT-AAAAA--ACTATATAC-T-CCCGAT-TCTTT-GA-TTCC-G-G--GG-gaa
gi|4 : acagagggACAGGCCAAAA---ACTATATGC-C---CAAACTCTTTGGA-CTCT-G-GATGGCCATAAgct
gi|3 : agggcaggAGGCCAAA------TATATGCGT-CTAAAA-TCTTT-GA-TTCC-G-G--GG-a
gi|13 : acaggggaaGCCAAAA---ACTATATGC-C-CCCAAA-TCTAT-GACTCCT-T-G--GG-CATAAgaaggggggataaaa
gi|15 : A--ACTATATGC-C-CCCATA-TCTTC-AA-TTCTGG-G--GG-CACAAa
gi|16 : CTATATGT-TTCCCAAA-TCTTT-GA-TTCT-GTG--GG-CATAAaa
gi|1 : TATATGC-C-CCCAAA-TCTTT-GA-TT-T-G-G--GG-aa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TATATGGCCCCAATCTTTAGTTGGGGGGGGGGGTAAAAGCTCTCATCCTTTCTTAAACAGTACGGGCA
Unaligned ( gi|5 ): CAGACAGATGGACAGGTCATTTTAACTACAATGCCCCAAATTCTCTGATTCCAGGGGC
Unaligned ( gi|6 ): CACAGACAGATGGGCAGGCAAAAAACCTGTATGACCAGAGTTGATTCCGGGGACAT
Unaligned ( gi|14 ): CCCCCCCCACAATTTTTTTTGGGGGGGGGGGGGGGGGCATA
Alignments
lowQualScore : 11111
lowQualScore : 9999 88888 3 6 3 3 3 3 77 6
lowQualScore : .... ..... . . . . . . .. .
lowQualScore : 4444 00000 1 2 1 1 1 1 33 7
consensus : NACAGA----CAGGCCAAAAA--ACTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
Reference ( family-678 ) : NACAGA----CAGGCCAAAAA--ACTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
gi|1 : TATATGCC-CCCAAA-TCTTT-GA-TT-T-G-G--GG-
gi|10 : GA----CAGGT-AAAAA--ACTATATACT-CCCGAT-TCTTT-GA-TTCC-G-G--GG-ggggggggggggtaaaagcttcaatcctttcttaaacatgtaggca
gi|11 : acagaggA----CGGGCCAAA-----CTAGATGCC-CCGGAA-TCTTT-GA-TTCT-G-GA-AG-CATAgct
gi|12 : atgaAGA----CAAGCCAAAAACTACAACATGCT-CTCGAA-TCGTT-GA-TTCT-G-G--Ggaa
gi|13 : aGCCAAAA---ACTATATGCC-CCCAAA-TCTAT-GACTCCT-T-G--GG-CATAAa
gi|15 : A--ACTATATGCC-CCCATA-TCTTC-AA-TTCTGG-G--GG-CACAAa
gi|16 : CTATATGTTTCCCAAA-TCTTT-GA-TTCT-GTG--GG-CATAAaa
gi|3 : GA----AAGGCCAAA------TATATGCG-TCTAAAATCTTT-GA-TTCC-G-G--GG-aa
gi|4 : acagggGA----CAGGCCAAAA---ACTATATG---CCCAAACTCTTTGGA-CTCT-G-GATGGCCATAAgaaggggggataaaa
gi|6 : agggcagACAGATGGGCAGGCAAAAAA--CCTGTATGAC-CA-GAG-T---T-GA-TTCC-G-G--GGACATa
gi|7 : cacagCAGA----TAGGCCAAAGA---CTATACGCC-TGCAAA-TCTTT-G--TTAT-G-A--AG-CATA
gi|8 : accaggtACATA----CAGGTCAAAA---ACTATATGCC-TCTGAA-TTTTT-GA-TTCT-G-G--GG-
gi|9 : aACAAA----CAGGCCAAAAA--ACTATATGCC-CTCAAA-TCTTT-GA-TTCT-G-G--GG-CATAAgtaataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATATGGCCCCAATCTTTAGTTGGGGGGGGGGGTAAAAGCTCTCATCCTTTCTTAAACAGTACGGGCA
Unaligned ( gi|5 ): CAGACAGATGGACAGGTCATTTTAACTACAATGCCCCAAATTCTCTGATTCCAGGGGC
Unaligned ( gi|14 ): CCCCCCCCACAATTTTTTTTGGGGGGGGGGGGGGGGGCATA
Alignments
lowQualScore : 11111
lowQualScore : 9999 88888 3 6 3 3 3 3 77 6
lowQualScore : .... ..... . . . . . . .. .
lowQualScore : 4444 00000 1 2 1 1 1 1 33 7
consensus : NACAGA----CAGGCCAAAAA--ACTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
Reference ( family-678 ) : NACAGA----CAGGCCAAAAA--ACTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
gi|1 : TATATGCC-CCCAAA-TCTTT-GA-TT-T-G-G--GG-
gi|10 : GA----CAGGT-AAAAA--ACTATATACT-CCCGAT-TCTTT-GA-TTCC-G-G--GG-ggggggggggggtaaaagcttcaatcctttcttaaacatgtaggca
gi|11 : acagaggA----CGGGCCAAA-----CTAGATGCC-CCGGAA-TCTTT-GA-TTCT-G-GA-AG-CATAgct
gi|12 : atgaAGA----CAAGCCAAAAACTACAACATGCT-CTCGAA-TCGTT-GA-TTCT-G-G--Ggaa
gi|13 : aGCCAAAA---ACTATATGCC-CCCAAA-TCTAT-GACTCCT-T-G--GG-CATAAa
gi|15 : A--ACTATATGCC-CCCATA-TCTTC-AA-TTCTGG-G--GG-CACAAa
gi|16 : CTATATGTTTCCCAAA-TCTTT-GA-TTCT-GTG--GG-CATAAaa
gi|3 : GA----AAGGCCAAA------TATATGCG-TCTAAAATCTTT-GA-TTCC-G-G--GG-aa
gi|4 : acagggGA----CAGGCCAAAA---ACTATATG---CCCAAACTCTTTGGA-CTCT-G-GATGGCCATAAgaaggggggataaaa
gi|6 : agggcagACAGATGGGCAGGCAAAAAA--CCTGTATGAC-CA-GAG-T---T-GA-TTCC-G-G--GGACATa
gi|7 : cacagCAGA----TAGGCCAAAGA---CTATACGCC-TGCAAA-TCTTT-G--TTAT-G-A--AG-CATA
gi|8 : accaggtACATA----CAGGTCAAAA---ACTATATGCC-TCTGAA-TTTTT-GA-TTCT-G-G--GG-
gi|9 : aACAAA----CAGGCCAAAAA--ACTATATGCC-CTCAAA-TCTTT-GA-TTCT-G-G--GG-CATAAgtaataaa
blockSeqs : TGGG AACTA T A G C G T AT C
blockSeqs : . AAC . C . . . . A A
blockSeqs : . AAA . . . . . . . .
blockSeqs : . AA . . . . . . . .
blockSeqs : . AA . . . . . . . .
blockSeqs : . GA . . . . . . . .
blockSeqs : . AA . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AA***
originalCons : NACAGA----CAGGCCAAAAA--ACTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
finalCons : NACAGA----CAGGCCAAAAA---CTATATGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATATGGCCCCAATCTTTAGTTGGGGGGGGGGGTAAAAGCTCTCATCCTTTCTTAAACAGTACGGGCA
Unaligned ( gi|5 ): CAGACAGATGGACAGGTCATTTTAACTACAATGCCCCAAATTCTCTGATTCCAGGGGC
Unaligned ( gi|14 ): CCCCCCCCACAATTTTTTTTGGGGGGGGGGGGGGGGGCATA
Alignments
lowQualScore : 9999 888 3 1 6 3 3 6 3 77 3
lowQualScore : .... ... . . . . . . . .. .
lowQualScore : 9999 555 1 1 2 1 1 2 1 33 3
consensus : NACAGACAGGCCAAA--A-ACTATA---TGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
Reference ( family-678 ) : NACAGACAGGCCAAA--A-ACTATA---TGCC-CCCGAA-TCTTT-GA-TTCT-G-G--GG-CATAA
gi|1 : TATA---TGCC-CCCAAA-TCTTT-GA-TT-T-G-G--GG-
gi|10 : GACAGGTAAAA--A-ACTATA---TACT-CCCGAT-TCTTT-GA-TTCC-G-G--GG-ggggggggggggtaaaagcttcaatcctttcttaaacatgtaggca
gi|11 : acagaggACGGGCCAAA-----CTAGA---TGCC-CCGGAA-TCTTT-GA-TTCT-G-GA-AG-CATAgct
gi|12 : atgaAGACAAGCCAAA--A-ACTACAACATGCT-CTCGAA-TCGTT-GA-TTCT-G-G--Ggaa
gi|13 : aGCCAAA--A-ACTATA---TGCC-CCCAAA-TCTAT-GACTCCT-T-G--GG-CATAAa
gi|15 : --A-ACTATA---TGCC-CCCATA-TCTTC-AA-TTCTGG-G--GG-CACAAa
gi|16 : CTATA---TGTTTCCCAAA-TCTTT-GA-TTCT-GTG--GG-CATAAaa
gi|3 : GAAAGGCCAAA------TATA---TGCG-TCTAAAATCTTT-GA-TTCC-G-G--GG-aa
gi|4 : acagggGACAGGCCAAA--A-ACTATA---TG---CCCAAACTCTTTGGA-CTCT-G-GATGGCCATAAgaaggggggataaaa
gi|5 : agggcagGACAGGTCATTTTA-ACTACAA--TGCC-CCAAAT-TCTCT-GA-TTCCAG-G--GG-a
gi|7 : cagacagatgCAGATAGGCCAAA--G-ACTATA---CGCC-TGCAAA-TCTTT-G--TTAT-G-A--AG-CATA
gi|8 : accaggtACATACAGGTCAAA--A-ACTATA---TGCC-TCTGAA-TTTTT-GA-TTCT-G-G--GG-
gi|9 : aACAAACAGGCCAAA--AAACTATA---TGCC-CTCAAA-TCTTT-GA-TTCT-G-G--GG-CATAAgtaataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATATGGCCCCAATCTTTAGTTGGGGGGGGGGGTAAAAGCTCTCATCCTTTCTTAAACAGTACGGGCA
Unaligned ( gi|6 ): CACAGACAGATGGGCAGGCAAAAAACCTGTATGACCAGAGTTGATTCCGGGGACAT
Unaligned ( gi|14 ): CCCCCCCCACAATTTTTTTTGGGGGGGGGGGGGGGGGCATA