lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333333 111 1111111 22222 11 111111111 55555555555555555555555555555555555 11 5555555555555555555555 1 2222 333333333333333333333 111 111 2 1 6666666666666666666666 11 2 111 666666666666666666666666666 111 1 1111111 1111 11 111 444444444444 2222222222222222222 111 111 22222 444444444 111 22 333333 111 444444444444444 1 11 11 5555555555 44444 222 3 1 44444444 1 77777777777777777777777777777777777777777 3333333333333333333 33333333333333333333 333333333 11111 1 111111 11 111 1 1 4444 1 22222222 55555 1 33333 111111 11111 222 2 33333333333333333333333 11111111111 2222 3 1 44444 2 555555555 1 3 44444 2 6666666666666666666666666666666666666666666666666666666666666666666666 4444444 1 22 1 11 44 222222 4 33 2222 3 3333 1 1 1 1 1 555555555 333 111 333 22
lowQualScore : 55 0 3 3 0 3 000000 7 666 3 7777777 3 88 6 44 88 00000 7 00 3 55 3 444444444 3 66666666666666666666666666666666666 666 55 0 4 4 11 2222222222222222222222 6 4 0 1111 66 666666666666666666666 4 9999 55 222 4 4 5 5 1 5 5 5 000 5 666 5 0 5 5 1 66 1111111111111111111111 6 1 0 4 11 8 3 0 111 000000000000000000000000000 666 0 8888888 1 6 3333 7 4 9999 99 888 6 444444444444 6666666666666666666 6 111 6 6 111 77777 6 333333333 7 555 6 3 11 6 99 6 6 000000 4 111 1 88 6 999999999999999 77 1 5 7 5 6 88 6 66 6666666666 6 5 00000 222 2 66 5 11111111 5 77777777777777777777777777777777777777777 5 9999999999999999999 66666666666666666666 111111111 44444 4 7 5 444444 5 00 4 7777 5 9 77 4 222 5 1 9 0000 1 99999999 5 66 33333 1 5 5 99999 5 5 666666 66666 555 44 6 6 6 6 99 6 99999999999999999999999 77777777777 8 0 0000 4 0 3 00000 4 0 222222222 0 3 0 3 4 11111 0 2222222222222222222222222222222222222222222222222222222222222222222222 4444444 0 3 33 4 0 33 4 33 2 555555 4 0 00 6666 3 5555 0 4 9 0 0 0 222222222 2 333 000 2 4 666 3 2 33
lowQualScore : .. . . . . . ...... . ... . ....... . .. . .. .. ..... . .. . .. . ......... . ................................... ... .. . . . .. ...................... . . . .... .. ..................... . .... .. ... . . . . . . . . ... . ... . . . . . .. ...................... . . . . .. . . . ... ........................... ... . ....... . . .... . . .... .. ... . ............ ................... . ... . . ... ..... . ......... . ... . . .. . .. . . ...... . ... . .. . ............... .. . . . . . .. . .. .......... . . ..... ... . .. . ........ . ......................................... . ................... .................... ......... ..... . . . ...... . .. . .... . . .. . ... . . . .... . ........ . .. ..... . . . ..... . . ...... ..... ... .. . . . . .. . ....................... ........... . . .... . . . ..... . . ......... . . . . . ..... . ...................................................................... ....... . . .. . . .. . .. . ...... . . .. .... . .... . . . . . . ......... . ... ... . . ... . . ..
lowQualScore : 00 2 6 6 9 6 888888 3 666 6 8888888 3 00 7 66 66 55555 3 00 6 00 6 555555555 6 77777777777777777777777777777777777 666 55 8 0 0 44 5555555555555555555555 4 4 2 7777 11 444444444444444444444 4 4444 66 222 4 4 7 7 4 7 7 7 000 7 111 7 6 7 7 4 44 4444444444444444444444 7 7 8 6 00 0 2 0 000 222222222222222222222222222 555 0 3333333 7 7 5555 3 2 9999 00 000 7 777777777777 3333333333333333333 7 777 7 7 777 00000 7 555555555 2 777 7 7 77 7 22 7 7 222222 0 777 7 88 7 888888888888888 99 3 3 1 0 7 33 7 00 0000000000 7 7 00000 888 9 99 0 22222222 0 99999999999999999999999999999999999999999 7 1111111111111111111 44444444444444444444 333333333 33333 0 1 7 333333 7 00 3 1111 7 3 99 3 111 7 4 6 4444 4 33333333 0 33 44444 4 7 0 99999 7 7 333333 33333 222 77 7 7 2 7 22 7 00000000000000000000000 88888888888 0 6 2222 2 0 2 22222 0 0 222222222 5 0 0 0 2 88888 0 5555555555555555555555555555555555555555555555555555555555555555555555 8888888 0 0 00 0 0 55 0 00 0 222222 0 0 55 5555 8 5555 8 0 0 0 0 0 555555555 5 888 000 5 0 222 0 5 22
consensus : TTTTTTTTT--TATAA-T-T-C-TT---AT-TTTT-GTATTTT-T-GTAC-ATACATATAT---A-TATATA-AA-CA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---ACT-GN--GC---ACC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A------CAT------AAAGAA-TAATTAATTA--TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-AT-A-AT-GTT-A-TA-CCT---T-AAG-A-AT-GTTT-AA-AAT-AG-GTTTTTCA-ACAAACT--AAATAT--C---AAAAAC-ATTATCATATAGT--G-TCCATTT-ACT-A-GAGTCTTTGGCTGA---TA--C-TT-GGAAAGCAT-TTA-CACA-----A-TATTT-T-T--CGATATTTTTCTATA-ATG-TTAGAC-AAATT----A-A--T--GGC---A-T--C-A-AAA-ATTTTTGG-G---TTTT-AA-AC---CTTN-G--GAT-CTTGG-AC--AT-AATATAT-AT-GCNTTT-TT-GCT--AA-TA-GAAT-AAGGAAANTT---TTCTT-NAA-CAACT-----TCCAG-T---AG--CATTTCCCAAGTAATACA-ATT--C-TTTT-GAATCT-TG-------TAA-TCC-TTTT----CAACAGCACTGTA-CCATTTT--ACAAAAA-------TCTCCCCAAAAG-GC--TAGGGT-GA-A--TATTACAA------------TCCATAAAA-TA--T-ATGAG-A--A-T---TGTTTCTC-T--TCCA-CA---TTTA-CAAAAAG-AACA-TTTGTCA-----TTNTCT-ACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-NTGTAGC-AATGT-AACACAT-AAGTTATACG--G-TAT-TGAAAA--ATATTATCGATTTTGTT---TCTTTGT-AC-AAATAAAA-AAGCGT-TT-TC---A-NAATAAAATTGTCCAACAA-TTTTTTCTGAA-AT-AGTTTCA-CC-GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTTCCTTC-AAAACT-TGA-TNCACAACATTTGATA--CT-TGCCTTNCGGATNATCTTTCGTAT--AT-GCACTGATTTGGTT--CTAAAACGGCGTCCATG-ATT-CACT-CTTTCTTTCCTTTTTTN-TTTTTTAAAGTCTAAAACAGCAATTTTAGT-CTTTTTGATC-TTCTNTNAGNA-TCCTGGAACAAGNCGGTGATNGACTTCAAAAATATCG-TNTGTA-CCAACACATATCTT--NACATC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTN---CCAAAACTAAGTCA-TTCGAGGGTCTTTNANAT-CCCCTNTCCACCCACNTTTGTATAA
Reference ( gi|1 ) : TTTTTTTTT--TATAA-T-T-C-TT---ATATTTT-GTATTTT-T-GTAC-ATACATATAT---A-TATATA-AA-CA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---ACT-TG--GC---ACC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A------TAT------AAAGAA-TAATTAATTA--TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-AT-A-AT-GTT-A-TA-CCT---T-AAG-A-AT-GCTT-AA-AAT-AG-GTTTTTCACACAAAC---AAATAT--C---AAAAAC-ATTATCATATGGT--G-TCCATTT-ACT-A-GAGTCTTTGGCTGG---TA--C-TT-GGAAAGCAT-TTA-CACA-----A-TATTT-T-T--CAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGC---A-T--C-A-GAA-ATCTTTGG-G---TTTT-AA-AC---CTTG-G--GAT-CTTG---C--AT-AATATAT-AT-GCTTTT-GT-GCT--AA-TA-GAATTAAGAAAAATT---TTCTT-AAA-CAACTG----TCCAG-T---AA--CATTTCCCAAGTCATACA-ATT--C-TTTTGGAATCTGTG-------TAA-TCC-TTT-----CAACAG-ACTGTAGCCATTTT--AC-AAA--------TCTCGCCAAAAGAGC--TAGGGT-GA-A-CTATTACAA------------TCCATAAAA-TA--TGATGAG-A--A-T---TGTTTCT--T--TCCA-CA---TT-A-CAAAAAG-A-CACTTTGTCA-----TTCT-T-ACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATACGTAG-TAT-TGAAAACCATATTATCAATTTTGTTATCTCTTTGT-AC-AAATAAAAGAAGCAT-TT-TC---A-AAATAAAAATGTCCAACAA-TTTTTCCTGAA-AT-AGTTTCATCC-GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTTCCTTC-AAAACTATGA-TACACAA-ATTTGATA--CTATGCTCTACAG-TTACTTTTCGTATA-AT-ACA-TGATTTGGTTTGCTAAAAC----TCCATG-ATT-CATT-C---------------A-TTTTTTAAAGTCTAA------AATTT--GT-C-TTTTGATC-TTCTTTT-GAA-TCCTAGAACAATACAATGATAG-TTTCAAGAA-ATTG-TTTGTACCCAACAGATATCTT--ACCATTCATTAAATA-CATTTAAAAGTTCC-CA-TT-CTT---TT---ACTAAGTCAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|6 : TTTTTTTTT--TCTA--T-T-C-TT---TTATTTTTGTATCTT-TAGTACTATGCATATAT-----TATATA-A--CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----ACT-TA--GTTGTATCTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAGAC-A------TAT------GAATAT-TATTTCATT---TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGT-A-CT-GTTTA-TA-CTTCTTT-AAGTA-ATTGTTT-AACAAA-AT-GTTTTTCAT-----C---AATTATTTC---AAAT-T-ACTATTTTATTATCTG-TTCCTTT-ACT-A-GATTTTTTTACTTA---TATGC-CT-ATA---C-T-TTA-TCTA-----C-TACTTCT-T--CACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCCTGG-T--C-A---A-AT-TTTGG-G---TTTT-AA-AC---CTTA-G--GAT-CCTG---C--AT-AATATAT-AT-GCTTTT-TT-GCT--AA-TA-GAA-TAAG-AAAATT---TTC-T-AAA-CAACT-----TCCAG-T---AA--CATTT-CCAAGTAATACA-ATT--CTTTTTGAAATCT-TG-------TAA-TCCTTTT-----CAACAGCACTGTA-CCATTTT--ACAAAA--------TCTCCCCAAAAG-GC--TAGGGT-GA----TATTACAA------------T-CATAAAA-TA--T-ATGAGAA--A-T---TGTTTCTC-T--TTCA-CAT--TT-A-CAAAAAGAA-CA-TTTGTCA-----TTTTCT-ACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-T-TTGTAGC-AATGT-AACACAT-AAGT-ATACG--G-TAT-TGAAA---ATA-TATCAATTTTGTT-TCT-TTTGT-AC-AAATAA---AAGCAT-TT-TC---A-AAAT-AAAATATCCAACA---TTTGTCTGAA-AT-AGTTTCA-CC-GA--GA-TAAATT-TCC-----
gi|9 : tTTTTTTTTT--TATAA-T-T-C-TT--------------TTTT-T-GTAC-ATACATTTAT---AATATATATAA-CAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----ACTGTGCAGC---ACC--T-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A------CAT------AAGGAA-T-ATTAATTAC-TGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-AT-AGATGGTT-A-TA-CCT---T-AAG-A-AT-GTT---A-GAT-AGAGTTTTTCA---AAACT--AAATGT--C---A
gi|14 : tttTTTTTTTTTAATATAAAT-TAT-TT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCG---G-TATATA-AA-CA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---ACT-GT--GC---A-C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A------
gi|2 : aTTTTTTTT--TATAA-T-T-C-TT----TATTTT-GTATTTT-TTGTAC-ATACATATAT---A-TATATA-A--CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----A-T-TG--GC---ACC-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A------TAT------AAAGAAATAATTAATTAC-TGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-AT-A-AT-GTT-AGTA-CCT---T-AAG-ATAT-G-TT-AA-AATTAG-GTTTTTCA-ACAAACT--AAATAT--C---AAAAAC-ATTATCATATGGT--G-TCCATTTTACT-AAGAGTCTTTGGCTGG---TA--C-TTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-T--CAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGC---A-T--C-A-GAA-ATCTTTGG-G---TTTTTAA-AC---CTTG-G---AT-CTTG---C--AT-AA-ATATTAT-GCTTTTTGT-GCT--AAATATGAAT-AAGAAAATTT---GTCTT-AAA-CAACT-----TCCAG-T---AA--CAATTTCCAAGTAATACA-ATT--C-TTT-GGAATCT-TG-------TAA-TCC-TTTT----CAACAG-ACTGTAGCCATTTT--AC-AAA--------TCTCGCAAAGAG-GC--TAGGGT-GA-AACTATTACAA------------TC-ATAAAAATA--TGATGAG-ATAA-T---TGTTTCTC-T--TCCA-CA---TTTA-CAAAAAG-A-CA-TTTGTCA-----TTCT-TTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT-T-GTAGC-A-TGTGAACACAT-AAGTAATACG--G-TAT-TGAAAACCATAT-ATCAATTTTGTT--TTCTTTGT-AC-AAATAAAA-AAGCAT-TT-TC---A-AA-TAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC-GA--GA-TAAATT-TCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCTTTTTCCCTTCAAAAACT-TGA-TACACAA-ATTTGATA--CTATGCTCTACAG-TTACTTTTCGTAT--AT-ACA-TGATTTGGTTGGCTAAAAC----TCCATGAATT-CATT-C---------------ATTTTTTTAAAGTCTAA------AATTTG-GT-C-TTTTGATC-TTCTTTG-AAA-TCCTAGAACAATACAATGATAG---TCAAGAA-ATTGTTTTGTA-CCAACAGATATCTT--ACCATC--TTAAATACCATTTAAAAGTTCCGCA-TTACTT---TT---A-TAAGTC--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAAc
gi|8 : TTTTTTT--TATAA-T-T-C-TTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT-T-------TATA-AA-CA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---ACT-GT--GC---A-A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A------CAT-------AAGAA-TA--TAATAC--TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A--A-AT-G-T-A-TA-CCT---TAAAG-A-AT-GTTTAAA-AAT-AG-GTTTTCAAC-CAAACCTAAAATAT--CATAAAGAACTATTATCATATAGT--GTTCCATTTAACTAA-GAGT-TTTGG--GAGTTTA--CTTT-GGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGT--TTAAACTAAATT----ATA--TCGGGC---ATT--C-AGGAA-AGTTTTGG-GGTTTTTT-AACAC---CTTT-A--GGTCCTTG---C--TA-AATATA--AT-GCTTTT-TTGGCT--AA-TA-GGAATAATGAAAATT---TTCCTAAAA-CAACT-----TCT-G-A---AG--AATTGCCCAGGTa
gi|15 : tttaTTTATTT--TA-AG-T-T-T-TT---AT-TTCT-ATATTTT------C-ATACATAT-----A-TATATA-AA-CA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CA-T---ACC-TGT-GC---A
gi|11 : ttttaTTTTTT--TATAA-T-T-C-TT------------TATTTT-T-GTAC-ATACATATAT---A-TATA---AA-CA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----ACC-GT--GC---ACC-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A------CAT------AA-GAA-TA-TTAATAC--TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TT-A-AT-GTT-A-TA-CCT---T-AAG-A-AT-G-TT-AA-AAT-AG-GTTTTTCA-ACAAACT--AAATAT--C---AAAAAC-ATac
gi|16 : TTTTTT--TATAA-T-T-CTTT---AT-TTTT-GTATCTT-T-ATAC-ATAC--ATAT---A-TATATA-AA-CA-ACACA
gi|4 : TTTTT--TAAGA-T-GGT-TT---ATTTTTT-GTATTTT--------ATACACATGTTTCA-AACATA-AATTT-ACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT------------C---ATT-CG-T------A--CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG------CATTCCCCCAAATAA-CAATGAATTA--TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-AT-
gi|3 : TTTT--TAAGA-T-GGT-TT---ATTTTTT-GTATTTT--------ATACACATGTTTCA-AACATA-AATTT-ACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT------------C---ATT-CG-T------A--CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG------CATTCCCCCAAATAA-CAATGAATTA--TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-AT-ttttttctttttcacggtatatgtattatgatcttcaacaaatctacttattcagttatataaccattacaggtgacccattaaccattttgaattgcaataaatatattttctcgattttttcttcatttagcaaattttaaaagctggcatctaacaatttggggttttgagtctttgtgatctggggatattaagattatgcatttttgcaaataaaatacggaaattcttctttgacaactccatcagtattgcctagtaacataattttctttttttgtgattttaataattcttttttttcaatttgtactattttacaaaaaaacatatttttccacaagggcattacaaaaacaatagtcgtttagaaaatagggaatgactgtctctctcttttagcaaaacgaacacaagccattgtctataagtgagttttagctatatacatgtaacacattaagttatacggtatctcaaaatgaattacgctcgtttctttgttgcataatgtctacgttcttttaataaaattgccaacatttttctgaaatagtttcactgacataagttttcccacttatttttcttttgagttgtgagctaggaatcttttttccttcaaaacttgtttacaacattttgtcttccggatgatctttcatattgcactgatttggaaatggcgttcataatttactctttctttcctttttttttttttaataaaacagcaattttagtctttttaatcttttgttagtattttgaaataagtcggtaattgacttcaaaaatatcttatgtaccaaccatatctttacattattaaacatttgaatgttccattctgccaaaactaagtcatcgagggtcttttaaatcccctgtctacccaatttgtataa
gi|5 : TTT--TATAA-TGT-C-TT----TATTTTTGTATTTTAT-GTAC-ATACATATAT---A-TATA---AA-CACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACA-GGC-GC---ACT-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A-------AT------AA-GAA-TA-TTAAT-ACCTGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-AT-A-AT-GGG-A-TA-CCT---T-AAG-A-AT-G-TT-AA-AAT-A--GTTTTTCACAT--AC---A-------C---AAAAAC-A-TATCAT-TAGT--G-TCCA-TT-ACT-A-AAG-----AG--------A----TT-GG--AGCA--TTA-CACAAAGACA-CA----T-T--CAATATTTCCCTAttttttctttttcacggtatatgtattatgatcttcaacaaatctacttattcagttatataaccattacaggtgacccattaaccattttgaattgcaataaatatattttctcgattttttcttcatttagcaaattttaaaagctggcatctaacaatttggggttttgagtctttgtgatctggggatattaagattatgcatttttgcaaataaaatacggaaattcttctttgacaactccatcagtattgcctagtaacataattttctttttttgtgattttaataattcttttttttcaatttgtactattttacaaaaaaacatatttttccacaagggcattacaaaaacaatagtcgtttagaaaatagggaatgactgtctctctcttttagcaaaacgaacacaagccattgtctataagtgagttttagctatatacatgtaacacattaagttatacggtatctcaaaatgaattacgctcgtttctttgttgcataatgtctacgttcttttaataaaattgccaacatttttctgaaatagtttcactgacataagttttcccacttatttttcttttgagttgtgagctaggaatcttttttccttcaaaacttgtttacaacattttgtcttccggatgatctttcatattgcactgatttggaaatggcgttcataatttactctttctttcctttttttttttttaataaaacagcaattttagtctttttaatcttttgttagtattttgaaataagtcggtaattgacttcaaaaatatcttatgtaccaaccatatctttacattattaaacatttgaatgttccattctgccaaaactaagtcatcgagggtcttttaaatcccctgtctacccaatttgtataaa
gi|12 : ATATA-AT-CA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATACT-GT--GC---ACC--T-TATGC--AA-CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTAC------ATTGAA-CGAACAGTGA--T-CA--ATA--A-TA--GAATAAT-ACTGGA-T------GAAG-AC--AAT-ATAA-AC-TTT-A-TACCCT---T-AGG-T-AT-GTTT-AA-AATAAG-GTTTTTC------------------------AAAAC-ATTATCATATAAT--G-TCaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|4 : tgc-----A-TATTT-TCT--CGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGC---A-T--CTA-ACA-AT-TTGGG-G---TTTT-GA-GT---CTTT-GT-GAT-CTGGGGAT--ATTAAGAT-T-AT-GCATTT-TT-GCA--AA-TA-AAAT-ACGGAAATTC---TTCTT-TGA-CAACT------CCAT-C---AG--TATTGCCTA-GTAACATA-ATTTTC-TTTT----TTTGTGATTTTAATAA-TTC-TTTTTTTTCAAT----TTGTA-CTATTTT--AC-AAAAAAACATATTTTTCCACAAGGGC----------------ATTACAAAAACAATAGTCGTTTAGAAAA-TA------GGG-A--A-TGACTGTCTCT--C--TCTT------TT-AGCAAAACG-AACACAA-GCCA-----TTGTCT-ATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--G-TATCTCAAAATGA-ATTA-CG--CTCGTT---TCTTTGTTGC-A--TAATGTCTACGT-TC-TT---T-TAATAAAATTG-CCAACA---TTTTTCTGAA-AT-AGTTTCA-CT-GA--CA-TAAGTTTTCCCACTTATTTT---TC---TTTTGAG----T-TGT--GAGC-TAGGAA--TCTT-TTTTCCTTC-AAAACT-TG--TTTACAACATTT---------TGTCTTCCGGATGATCTTTCATAT---T-GCACTGATTTGG-------AAATGGCGTTCATA-ATT-TACT-CTTTCTTTCCTTTTTTT-TTTTTTAA----TAAAACAGCAATTTTAGT-CTTTTTAATC-TTTTGTTAGTA-TTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCT-TATGTA-CCAAC-CATATCTT--TACATT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTG---CCAAAACTAAGTCA--TCGAGGGTCTTTTAAAT-CCCCTGTCTACCCA-ATTTGTATAAag
gi|3 : ttttttaagatggtttattttttgtattttatacacatgtttcaaacataaatttacatacactcgatctacattcactcattcgtaccaaagtaagttttctctgagcaccttctgcattcccccaaataacaatgaattatgtaatttcgaaagtaaatgttgaataaatatttttttctttttcacggtatatgtattatgatcttcaacaaatctacttattcagttatataaccattacaggtgacccattaaccattttgaattgcaataaat-----A-TATTT-TCT--CGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGC---A-T--CTA-ACA-AT-TTGGG-G---TTTT-GA-GT---CTTT-GT-GAT-CTGGGGAT--ATTAAGAT-T-AT-GCATTT-TT-GCA--AA-TA-AAAT-ACGGAAATTC---TTCTT-TGA-CAACT------CCAT-C---AG--TATTGCCTA-GTAACATA-ATTTTC-TTTT----TTTGTGATTTTAATAA-TTC-TTTTTTTTCAAT----TTGTA-CTATTTT--AC-AAAAAAACATATTTTTCCACAAGGGC----------------ATTACAAAAACAATAGTCGTTTAGAAAA-TA------GGG-A--A-TGACTGTCTCT--C--TCTT------TT-AGCAAAACG-AACACAA-GCCA-----TTGTCT-ATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--G-TATCTCAAAATGA-ATTA-CG--CTCGTT---TCTTTGTTGC-A--TAATGTCTACGT-TC-TT---T-TAATAAAATTG-CCAACA---TTTTTCTGAA-AT-AGTTTCA-CT-GA--CA-TAAGTTTTCCCACTTATTTT---TC---TTTTGAG----T-TGT--GAGC-TAGGAA--TCTT-TTTTCCTTC-AAAACT-TG--TTTACAACATTT---------TGTCTTCCGGATGATCTTTCATAT---T-GCACTGATTTGG-------AAATGGCGTTCATA-ATT-TACT-CTTTCTTTCCTTTTTTT-TTTTTTAA----TAAAACAGCAATTTTAGT-CTTTTTAATC-TTTTGTTAGTA-TTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCT-TATGTA-CCAAC-CATATCTT--TACATT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTG---CCAAAACTAAGTCA--TCGAGGGTCTTTTAAAT-CCCCTGTCTACCCA-ATTTGTATAA
gi|7 : tttttaagatggtttattttttgtattttatacacatgtttcaaacataaatttacatacactcgatctacattcactcattcgtaccaaagtaagttttctctgagcaccttctgcattcccccaaataacaatgaattatgtaatttcgaaagtaaatgttgaataaatatttttttctttttcacggtatatgtattatgatcttcaacaaatctacttattcagttatataaccattacaggtgacccattaaccattttgaattgcaataaat-AAATT----A-A--TTTGAC---A-TTTC-A-AAATATTGTTGATG---TTTT-AA-ACACCCTTGTGACGAT-CTTGGTGCTGAT-AATA-AC-ATTGCGTTT--T-GCTTAAA-TA-GAAT----AAAAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAA--CATGTCCAAAGTAATACACA----C-TTTTTGAATCT-TG-------TAATTCC-TTC-----CAACAGCACTGTA--CATTTTTAACAAAA--------TCTC-CCAAAAG-GCTTTAGGGT-AATA-TT-TTACA--------------TCATAGAA-TGATTAATGAGAA--A-T---TGTTTCTTCT--TTCAGCATGTTT-A-CTAAAAG-AGCTATTTGTCAGTTCTTTCT-T-ACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATAC--AGATCT-TGAAAAACATATAATCAATTTT------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAA-T--------AG-GTCAGTTT-A-CC-GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTCa
gi|5 : CCAGGT---AAACCATTTCC-AAGTAATCCA-ATT--C-TTTTTGAATCT-T--------TAA-CCC-T
gi|10 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaCT-TTT-----CAACAGCACTGTA-CCATTTT--AC-AAAA-------TCTCCCCAAAAG-GC--TAGGGT-GA----TATTACAA------------TC-ATAAAA-TA--T-ATGAG-A--AAT---TGTTTCTC-T--TTCA-CA---TTTA-CAAAAAGAA-CA-TTTGTCA-----TTTC-T-ACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-T-TTGTAGC-CATGT-AACACAT-AAGT-ATACG--G-TAT-TGAAA---ATA-TATCAATTTTGTT-TCT-TTTGT-AC-AAATAA---AAGCAT-TT-TC---A-TAATAAAagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|17 : tc-ACTGCA-CCATTTT--ACAAAA--------TCTCCCCAAAAG-GC--TAGt
gi|5 : ttctttt--AC-AAA--------TCTCCCCAAAAG--C--TAGGGTTGA-A----TTACAA------------TC-ATCAAA-TA--TAA-----A--T-T---TATTTCC--TCTTTCA-CA---TTTA-CAAAAAG-AACGTTTTGTCA-----TTTT-C-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATACGTA------TGA------TAT-ATCAAGTTTGCT---TCTTTGT-ACCAAATAAAAG---CAT-TT-TTCCGA-AAATAAAATTTTCCAACAA-TTTTTC-TGAACAT-AGTTTCACCTAGAAGGA-AAAG----AC-----ATTAG---AC--A----GAGAACTT-CTT--GGGC-CATGAACTTCCT---TTCCTTC-AAA-CTCTGAATACACAA-ATCTGATATACTCAGCT-TACAGGTTAATTTCTGTATACATGACA-TTGCTTGGTT--CTAAA-C----TCCATG-ATTTCATTTC---------------A-TTTT---AAATCTAA------AATTT--TTTC-TTTTGATCCTTCTTTG-GAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A-TG-TTTGTA-CCAACA-ATATCTTTCAACATCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTT---ACTAAGTCCATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AACAATTTTGTCTTGTAATATGGCCTTCTGTGCTTTTGAAATAAGAATGTCGAAGTTAAAAAAAGTCTTTATATCAAACACACCTTCTACATCATTAACACATTTCAACGTTTCCATTCAGGGTTCTAATGCCCCTAGCCATCCAGTTAATTTGTAGCAAAAATC
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 111 1111 222222222222222222222222 11111 1111111111111 111111 1 1 5555555555555555555555555555555555555 2222222 1 22222222 333333333333 111 11 111 2222 444444444 1 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 22222 2222222222 111 1 1 1111 22 1 111 111111 1 1 1 1111111 11111 1111 22 1 33333 111 1 1111 11 11 2 333333333 1 222 1 444444444444444 44444444444444444 111 333333 1 1111 1111 22 222222 11 1111 2222 1 222222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 7777777777777 00000 3 88888888 555 55 3 3 88 44444444444444444444444 4 111 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 1 5 9999999999999999999999999999999999999 5 8888888 0 5 1 5 3 5 6 33333333 5 444444444444 000 5 77 5 00 5 5 000 5 5 77 6 3333 000000000 5 5 2 1 999 77 5 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 88888 5 5 6666666666 777 5 0 77 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 00 2 888 5 0 5 5 66 222 444444 888 3 55 5 888 0 0 5 0 6666666 2 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 88 1 0 999999999 1 1 3 1 2 999 8 3 0 888888888888888 8 0 1 1 77777777777777777 444 111111 3 9 4444 6 1 5555 33333 1 00 111111 1 6 44 6666 6 6 5555 7 1 2 6 6 6 000000 8 999 22 1 1 88 1 77
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... . ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ..................................... . ....... . . . . . . . ........ . ............ ... . .. . .. . . ... . . .. . .... ......... . . . . ... .. . . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . ..... . . .......... ... . . .. . .. . . . . . .... . . . .... . .. . . . . .. . ... . . . . .. ... ...... ... . .. . ... . . . . ....... . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .. . . ......... . . . . . ... . . . ............... . . . . ................. ... ...... . . .... . . .... ..... . .. ...... . . .. .... . . .... . . . . . . ...... . ... .. . . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 6666666666666 77777 6 55555555 222 00 6 6 77 55555555555555555555555 7 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 4 7 3333333333333333333333333333333333333 7 4444444 1 7 4 0 6 0 7 00000000 7 444444444444 000 7 99 7 66 3 7 000 7 7 99 6 6666 666666666 7 7 0 0 444 99 7 4 7 00 0 99 77 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 55555 0 0 1111111111 555 0 0 55 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 66 5 444 0 0 1 0 99 555 444444 666 2 22 0 888 0 0 0 0 4444444 0 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 66 0 0 444444444 4 0 6 0 2 666 0 2 8 666666666666666 0 8 4 4 00000000000000000 444 999999 8 8 2222 7 0 2222 22222 0 77 333333 0 7 00 8888 7 7 0000 8 0 0 7 7 7 666666 0 444 22 0 0 66 0 44
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCATTT-ACT-A-GAGTTTTTGGCTGA---TA--C-TT-GNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TT-AAAC-AAATT----A-A--T--GGC---A-T--CA-GAA-ANTTTTGG-G---TTTT-AA-AC--CTTTGT---GATCTTGG--C--AT-AA-TA-TATATGCTTTTT-T-GCT--AA-TA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-AAT---T-GTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATAC-G--GTATCGAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-AC-A-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTG--ATACTATGCCTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGGTT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTNTTAGNATCCTGGAACAAGACGATGATNGACTTCAAAAA-ATCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GN-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCATTT-ACT-A-GAGTCTTTGGCTGA---TA--C-TT-GGAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TT-AGAC-AAATT----A-A--T--GGC---A-T--CA-AAA-ATTTTTGG-G---TTTT-AA-AC--CTTNG----GATCTTGG-AC--AT-AA-TA-TATATGCNTTTT-T-GCT--AA-TA-GAA-TAAGGAAANT--TTTCTT-NAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAG--AAT---T-GTTTC-TCTTCCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-NTGTAGC-AATGT-AACACAT-AAGTTATAC-G--GTATTGAAAA--AT--AT-TATCGATTTTG-TT---TC-TTTGT-AC-A-AATAAAA-AAGCGT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATNCACAACATTTG--ATACT-TGCCTTNCGGATNATCTTTCGTAT--ATG-CACTGATTTGGTT--CTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTNTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTNTNAGNATCCTGGAACAAGNCGGTGATNGACTTCAAAAATATCG-TNTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTNCCAAAACTAAGT-C-ATTCGAGGGTCTTTNANA-TCCCCTNTCCACCCACNTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTT-ACT-A-GAGTCTTTGGCTGG---TA--C-TT-GGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TT-AAAC-AAATT----A-A--T--GGC---A-T--CA-GAA-ATCTTTGG-G---TTTT-AA-AC--CTTGG----GATCTTG---C--AT-AA-TA-TATATGCTTTTG-T-GCT--AA-TA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--AAT---T-GTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATAC-GTAGTATTGAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-AC-A-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTG--ATACTATGCTCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTTGCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCTTTT-GAATCCTAGAACAATACAATGATAG-TTTCAAGAA-ATTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAAT----CAT-AAAAT-AT--ATGAGA-AAT---T-GTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-CATGT-AACACAT-AAG-TATAC-G--GTATTG-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-AC-A-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA-C-C--T-TATGC--AA-CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--GC-TTTTGAAATAAGA--ATGTCGAAGTTAAAAAAAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA--TAATTAAT-TACTGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTTACT-AAGAGTCTTTGGCTGG---TA--C-TTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATG-TTTAAAC-AAATT----A-A--T--GGC---A-T--CA-GAA-ATCTTTGG-G---TTTTTAA-AC--CTT-G----GATCTTG---C--AT-AAATA-T-TATGCTTTTTGT-GCT--AAATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATAAT---T-GTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT--TGTAGC--ATGTGAACACAT-AAGTAATAC-G--GTATTGAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-AC-A-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTG--ATACTATGCTCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGGTTGGCTAAAAC----TCCATGAATTCATTCAT---------------TTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCTTTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-ATTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCATTA-ACC-A-----TTTTG---------A--A-TT-GCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TT-AG-C-AAATTTTAAA-AGCT--GGC---A-T--CT-AAC-AATTTGGG-G---TTTT-GA-GT--CTTTGT---GATCTGGGGAT--ATTAA-GA-T-TATGCATTTT-T-GCA--AA-TA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGG--AATGACT-GTCTC-TCT-----CT--TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATAC-G--GTATCTCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGC-ATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG--TTTACAACATTT---------TGTCTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG-------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAGTATTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCATTA-ACC-A-----TTTTG---------A--A-TT-GCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TT-AG-C-AAATTTTAAA-AGCT--GGC---A-T--CT-AAC-AATTTGGG-G---TTTT-GA-GT--CTTTGT---GATCTGGGGAT--ATTAA-GA-T-TATGCATTTT-T-GCA--AA-TA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGG--AATGACT-GTCTC-TCT-----CT--TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATAC-G--GTATCTCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGC-ATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG--TTTACAACATTT---------TGTCTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG-------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAGTATTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA-TT-ACT-A-AA----------GA---GA----TT-GG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A------AAT---TTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATAC-G---TAT-----G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACCA-AATAAAA---GCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATATACT-CAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGGTT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCTTTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-AT-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCCTTT-ACT-A-GATTTTTTTACTTA---TATGC-CT-ATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT----T-AGAGT----A-A--T--GGCCTGG-T--CA-AA----TTTTGG-G---TTTT-AA-AC--CTTAG----GATCCTG---C--AT-AA-TA-TATATGCTTTTT-T-GCT--AA-TA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAAT----CAT-AAAAT-AT--ATGAGA-AAT---T-GTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAG-TATAC-G--GTATTG-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-AC-A-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGAC---A-TTTCA-AAATATTGTTGATG---TTTT-AA-ACACCCTTGTGACGATCTTGGTGCTGAT-AA-TAACAT-TGCGTTTT---GCTTAAA-TA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-AAT---T-GTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATACAG--ATCTTGAAAAACAT--AT-AATCAATTTT---------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCATTTAACTAA-GAGT-TTTGG--GAGTTTA--CTTT-GGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTT-AAACTAAATT----ATA--TCGGGC---ATT--CAGGAA-AGTTTTGG-GGTTTTTT-AACAC--CTTTA----GGTCCTTG-CT--A--AA-TA-TA-ATGCTTTTT-TGGCT--AA-TAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 111 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 11 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 11 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 4 111 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 5 66 5 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 7 11 1 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... . ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . . .. . . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . .. . . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 7 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 0 99 0 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 5 33 0 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TTA-T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGGNATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTNTTAGNATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTTT--T-GTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCTTTT-GAATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--GC-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA--TAATTAAT-TACTGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-G-TT--T-GTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGAAATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAGTATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAGTATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-G-TT--TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCTTTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATG-TTAAT-G-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 22 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 666 777 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 00 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... ... ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . .. . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 222 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 99 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-ATGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-G-AA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACG-AACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA---TAATTAAT-TACTGTA--ATT--A-TA--AAG-AAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT--TGTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-G-AA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAAT-AT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAG-AA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGG-AA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 111 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 11 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 4 111 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 5 66 5 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... . ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . . .. . . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 7 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 0 99 0 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TTA-T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTTT--T-GTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA--TAATTAAT-TACTGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-G-TT--T-GTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-G-TT--TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATG-TTAAT-G-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 22 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 666 777 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 00 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... ... ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . .. . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 222 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 99 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-ATGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-G-AA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACG-AACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA---TAATTAAT-TACTGTA--ATT--A-TA--AAG-AAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT--TGTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-G-AA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAAT-AT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAG-AA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGG-AA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 111 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 11 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 4 111 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 5 66 5 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... . ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . . .. . . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 7 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 0 99 0 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TTA-T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTTT--T-GTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA--TAATTAAT-TACTGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-G-TT--T-GTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-G-TT--TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATG-TTAAT-G-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 22 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 666 777 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 00 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... ... ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . .. . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 222 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 99 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-ATGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-G-AA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACG-AACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA---TAATTAAT-TACTGTA--ATT--A-TA--AAG-AAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT--TGTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-G-AA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAAT-AT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAG-AA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGG-AA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 111 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 11 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 4 111 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 5 66 5 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... . ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . . .. . . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 7 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 0 99 0 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TTA-T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTTT--T-GTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA--TAATTAAT-TACTGTA--ATT--A-TA--AAGAA-G-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-G-TT--T-GTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-T-ATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-G-TT--TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-G-TT--T-GTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATG-TTAAT-G-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
Alignments
lowQualScore : 1 111111 111 111 1 11111 111111111 2222222222222 11111 11111111 44444444444444444444444 1111 222222222222222222222222 11111 1111111111111 111111 1 5555555555555555555555555 2222222 2222222 1 22 1 333333333333 111 1 111 1111111 222 11 11 1 222222 111 22222 1111 11 2222 111 1 3333333 1111111 3333 22222 11 1 1 1111 22 1 22222 111111 1 1 1 11 11111 1111 22 1 33333 111 1 1111 11 1111 2 2222222 11 1 222 1 5555555555555555 44444444444444444 111 333333 1 1111 1 22 22222222 11 1111 2222 1 222 111 11 11
lowQualScore : 44 3 3 0 888888 6 444 3 6666 000 3 0 2 22 77 88888 6 99 3 44 3 333333333 3 3333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 666 777 8 5555 55 111111111111111111111111 4 4 777 4 0 4 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 5 5 3333333333333333333333333 1 3333333 5 8888888 0 5 1 5 3 5 6 88 1 5 444444444444 5 888888 5 1 5 555 5 77 7 1 000 8888888 000 4 5 00 1 999 33 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 7777 5 33 4444 333 0 66 4 888 2222222 4 66 55 6666666 0 0000 5 5 00000 5 33 0 2 5 66 0 3 5 5 5 0000 5 0 5 9999 5 77 2 5 5 5 00 2 888 5 0 5 66 22222 444444 888 3 3 5 888 0 0 0 11 5 3 5 5 22222 5 1111 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 3333333 11 0 3 0 1 999 8 3 0 2222222222222222 8 0 1 1 66666666666666666 444 111111 3 9 4444 6 5 3 77 1 2 1 00 11111111 6 44 6666 6 6 5555 7 1 2 6 6 6 0 000 8 999 22 1 88 0 55
lowQualScore : .. . . . ...... . ... . .... ... . . . .. .. ..... . .. . .. . ......... . ............. ..... . ........ ... .. . . .. ....................... ... ... . .... .. ........................ . . ... . . . . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . . ......................... . ....... . ....... . . . . . . . .. . . ............ . ...... . . . ... . .. . . ... ....... ... . . .. . ... .. . . .. . .. .. . ...... . ... . . . . .. ..... .... . .. .... ... . .. . ... ....... . .. .. ....... . .... . . ..... . .. . . . .. . . . . . .... . . . .... . .. . . . . .. . ... . . . .. ..... ...... ... . . . ... . . . .. . . . . ..... . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .. . . . . ... . . . ................ . . . . ................. ... ...... . . .... . . . .. . . . .. ........ . .. .... . . .... . . . . . . . ... . ... .. . .. . ..
lowQualScore : 66 3 3 0 999999 7 555 3 7777 888 1 5 3 88 99 88888 7 22 3 66 3 333333333 3 3333333333333 22222 6 55555555 222 00 6 6 77 55555555555555555555555 222 000 3 4444 55 666666666666666666666666 9 0 000 0 8 0 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 5555555555555 000 11 4 99 999999 0 7 7 6666666666666666666666666 0 1111111 7 4444444 1 7 4 0 6 0 7 33 3 7 444444444444 7 111111 7 0 7 777 7 99 1 9 000 9999999 000 9 7 77 9 444 66 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 3333 7 11 3333 666 0 11 4 111 9999999 4 11 22 6666666 9 2222 0 0 22222 0 88 0 5 0 99 0 2 0 0 0 6666 9 2 0 0000 0 55 5 0 0 0 99 5 444 0 0 1 99 88888 444444 666 2 2 0 888 0 0 0 55 0 2 0 0 11111 0 1111 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 00 6 6 6 4 000 0 2 8 6666666666666666 0 8 4 4 22222222222222222 444 999999 8 8 2222 7 0 7 77 0 2 0 77 55555555 7 00 8888 7 7 0000 8 0 0 7 7 7 6 444 0 444 22 4 66 6 00
consensus : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-ATGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTTT--TATAA-T-T-CTT---ATATTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCA-TTT-ACT-AGAGTCTTTGGCTGG---TA--C-TTGGAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTAA-AC--C-TTGGGA---TCTT-GC----ATA---ATA-TA-TATGCTTTTG-T-GCT--AATA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTG-G-AATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGT-GAAC-TA--TTACAATC---CAT-AAAAT-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTT-GTCA----TTCT-TACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT-TTGTAGC-AATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTG-TTATCTC-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAATGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTT-GCTAAAAC----TCCATG-ATTCATTC----------------ATTTTTTAAAGTCTAA------AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-A--TTG-TTTGTACCCAACAGATATCTT--A-CCATTC-ATTAAATA-CATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TT-TCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-CATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-ATAAA
gi|11 : TTTTTT--TATAA-T-T-CTT------------TATTTT-T-GTAC-ATACATATATA-T---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--AC-A---------TT-CAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-G-AA---TA-TTAAT-AC-TGTA--ATT--AATA--AAGAA-G-AC---A-TATCTAGAAAA-A---AAT-TTA-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--GC-AGCATTTATGTT-CATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACG-AACAGTGATCAAT-AA-TAGA--ATA--A-TA--CTGGATG-A------------AGACA-A---TAT-A-A-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAACAATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAA-AAGTC--TTTATA-TCAA-ACACACCTT--CTACA-TC-ATTAA-CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTTTAATATAAAT-TATTT---AT-TTTT-GTATTTT-C-ATAC-ATACATACCGG-T---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--AC-A---------TT-CA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTATTT--TA-AG-T-T-TTT---AT-TTCT-ATATTTT------C-ATACATAT--A-T---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--AC-A---------TT-CATA---CC-T--GT-GCA-
gi|16 : ttttaTTTTTT--TATAA-T-T-CTTT--AT-TTTT-GTATCTT-T-ATAC-ATACAT--ATA-T---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTTT--TATAA-T-T-CTT---TA-TTTT-GTATTTT-TTGTAC-ATACATATATA-T---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--AC-A---------T--CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAA---TAATTAAT-TACTGTA--ATT--A-TA--AAG-AAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTT-ACTAAGAGTCTTTGGCTGG---TA--CTTTGAAAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATGTTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-GT--TTTTAA-AC--C-TTG-GA---TCTT-GC----ATA---A-A-TATTATGCTTTTTGT-GCTA-AATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTG--G-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCAAAGAG-GC--TAGGGT-GAAACTA--TTACAAT----CATAAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAG-AC-A-TTT-GTCA----TTCTTTACAAG-TTTATA-GTTTG-TGAAGG-AACAGA-GTT--TGTAGC--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTTT---TC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-ATAAAAATGT-CAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC--TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG-TTGGCTAAAAC----TCCATGAATTCATTC---------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAA-A--TTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATACCATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-C--TTCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTTT--TAAGA-T-GGTTT---AT-TTTTTGTATTTT--------ATACACATGTT-TCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--AC-A---------TT-CACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AAT-AA---CAATGAAT-TA-TGTA--ATT--T-C-----GAAAG--T---A-AATGTT-GAAT-A---AAT-ATT-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCA-TTA-ACC-A----TTTTG---------A--A-TTGCAA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TTAG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTTGA-GT--CTTTGTGA---TCTGGGG----ATATTAAGA-T--TATGCATTTT-T-GCA--AATA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTT--GTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTAC-AAA--AA--CAATAGTCGTTTAG-AAAAT-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAA-GCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-GCT-ATATA-C-A-TGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCG-TT---TC-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-ATAAAATTG-CCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT--CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG--------AAATGGCGTTCATA-ATTTACTCTTTC-TTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATA--TCT-TATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A-CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-C-A-TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TTT--TATAA-TGT-CTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATATA-T---ATA---AACACACACAACTT--TG-----C-AA--CAC--AC-A---------TA-CAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-G-AA---TA-TTAATACC-TGTA--ATA--AATA--AAGAA-G-ACCCCA-TATCTATGAAA-A---AAT-ATA-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA--TT-ACT-AAA----------GA---GA----TTGG--AGCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTCTT-----TTT--G-AATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGAA--T----TACAATC----AT-CAAAT-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-G-TTTTGTCA----TTTTC-ACAA-------A-GTTTGGTGAAGGCAA-AGA-GTT-TTGTAGC-AA-GT-AACACAT-AAGTCATACG---TAT-------G--AT--AT--ATCAAGTTTG-CT---TC-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-ATAAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA-TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGG-TT--CT-AAAC----TCCATG-A-------TTTCATTTCATTTT----------AAATCTAA------AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-A--T-G-TTTGTA-CCAACA-ATATCTTTCA-ACA-TCAATTAAAC--CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCC-ATTCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTTT--TCTA--T-T-CTTTT-AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCCC-A---------TT-CAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAAT-AT---TATTTCAT-T--TTTA--ATTTAA-TT--AAG------C---T-GATCTTATTAC-A---TATTGTA-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA--TT--A--TTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCC-TTT-ACT-AGATTTTTTTACTTA---TATGC-CTATA---C-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT---T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTTAA-AC--CTTAG-GA---TCCTG-C----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTC-T-----TTTTGA-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGT-GA---TA--TTACAATC----AT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTTTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTG-TT---TCTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-ATAAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTTAA-ACACCCTTGTGACGATCTTGGTGCTGATA---ATAACA-T-TGCGTTTT---GCTTAAATA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTT--G-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGT--AA--TATTTTACA--T---CAT-AGAATGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTT-GTCAGTTCTTTCTTACAAGTTTTA-ATGTTTG-TGAAGG-AA-AGATGTTAATG-AGCAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACATAAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTTT--TATAA-T-T-CTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT----T----TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--AC-A---------TT-CATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAG-AA---TA--TAAT-AC-TGTACCATTA-A-TAAGAAGGAAGAAC---A-TATTCTAGAAACA---AAT-A-A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCA-TTTAACTAAGAG-TTTTGG--GAGTTTA--CTTTGGAAAGCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTTAAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTTAACAC--CTTTAGGT---CCTTGCT----A-A---ATA-TA--ATGCTTTTT-TGGCT--AATAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTTT--TATAA-T-T-CTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TT-----C-ACACC-C--ACCA---------TTTCAT----AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGG-AA---T-ATTAAT-TACTGTA--ATTA-A-TA--ACAGAAG-AC---ATTATC-TAGAAA-AAACAAT-ATAGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A
blockSeqs : AA A G A TTCAT T TT T ATAA CAA T T AT AG CCACC G AC A TC C GCATTTATG T TTATACTGT GCAC A TACAGA CAT TT G A TA CCTTCTGCATTCCCCCA AGA CAG A TAC CC AATAAGAAGGAAGAACAT G C AAC T G G T G C CTT A GTAT T T AA C A GA T AAC ATCTACTTATT ATA TT T TT TACAGG A T A AAGAGTCTTTGGCTGGTACT A AAGCATC C AAGACA C C A T A C GT A T TTAAAAGCT T TTCAA T T T GTT C AC T T CGA GGTGCTG TTA G A AT T GT TA T . GA T CT AA C ATTATT ATA A C A C CT CTTTT TGA . AA TTTT AGC G TA G AAC AAACATA . TT TG AACTA GTTT A G TTAAT T TG C C G TG G A T . T GTTC C T TTAT T GG G C C T AA G AAA G T T . CTTGA ATGA TAT T A T . T T T AA . A A G CCGAA C ATGT AT C C C T TA AG T T CACTT TGT TT T AACT G T GG G A AC T C A . AATA C GATACTA AG A C ACA A C TTGGCTAAAAC A C T TTTCTTTCCTTTTTTT AGT AACAGC G T AATA C G G AA G A C AA AAGTC . AC TCA . A ATAC C C T G T A AAA C AT TT T CT TT
blockSeqs : . . . G TTAT T AT . ATA CAA . T AT C CTA G AC . . . . . ACTTAGTT TCT . TACAGA A . . . TT CCTTCTGCATTCCCCCA CG . A ACC . AATAAAGAAGACCCCAT A . . . . . . . . . . GTAT . T A . . G T AA ATCTACTTATT . . . . TACAGG A . . AGATTTTTTTACTTATATGC C AAGCAT . AT . C A T A . GT A . TTAAAAGCT . CAGG . A . T . . T T . GGG TTA G . A A TG A G . GG T . A . T . . T A . C CTTTT GT . AA TTTT AGC . . . AA AAACATA . . G ATATT GTTT . . TGAT . TG T C . . G A . . . . G . TTA . G G . . . A G CA . T T . TGA ATGA TT T A . . T T T GT . A . . AT . TTTT AT . . . . . . . T CACTT . . A . . G . . A CT T . . . ATA C GATATA . A T A . C AAATGGCG . T C TTTCTTTCCTTTTTTT AAT AACAGC A T . . G A C T G A AC ATTGT . AG CT . . CA A A C . . . AAA . T TC A T CT
blockSeqs : . . . G TAT . TA . CGG . . C GT . CA . . . . . . . CACAGGC CC . AATCAA T . . . TG ACCATGTTACATTGA AT . A TAC . AATAACAGAAGACATT A . . . . . . . . . . AT . T A . . G T AA ACCTAAAATAT . . . . ATAA T . . AAGAGTTTTGGGAGTTTACT C AGCA . A . . A T A . G . . ATATCG . CAG . A . . . . T T . GGG . T . A A T . . . GG T . T . T . . T A . T . GT . G . AGC . . . AA A . . G AAA C . . TAT . . . C . . . A . . . . G . TTA . G G . . . A G AA . . T . CTC ACAT TT T A . . . . . GT . A . . TT . TTG A . . . . . . . T . . . T . . G . . A AC T . . . TT . . . G T . . T AAATGGCG . T C TTTCATTTCATTTT . AA A T . . G A A G G T AC TATCT . C A . . AC G T T . . . GTT . A TC A T A
blockSeqs : . . . . TAT . T . ATA . . G AC . . . . . . . . . TACTGT CC . TGCAA A . . . TG TAGACATATG AT . A AC . AATAAAGAAGACAT T . . . . . . . . . . TA . T A . . G A AA ACTAAATAT . . . . ATGG . . . ATTTTGAA G CT . C . . A C A . . . . AATTT . CTA . A . . . . C G . GCT . T . A T T . . . TG A . T . T . . A A . T . G . G . AG . . . AA A . . A AAA C . . TAT . . . C . . . A . . . . T . TTA . G G . . . T G AA . . T . CTC AT TA T A . . . . . AT . A . . TT . TTG . . . . . . . . T . . . . . . T . . . . . . . . TT . . . . A . . . TTCTAAAC . . . AT . . . C . . . G T G A T . TATCT . C T . . A G T . . . . A . A . T . A
blockSeqs : . . . . AT . C . ATA . . . AT . . . . . . . . . ACCTGT TT . TGCAA A . . . TT ACATA AT . T AA . ATAAAGAAGACAT A . . . . . . . . . . A . T A . . T A AA ACTAAATAT . . . . ATAG . . . ATTTTGAA T A . . . . . G . . . . . AAT . CTA . T . . . . T . . GC . T . . G T . . . G T . A . . . . C G . C . G . G . . . . . AA A . . A TA . . . TA . . . C . . . A . . . . T . G . G G . . . . G A . . C . TG CC T T A . . . . . AC . A . . AA . TAT . . . . . . . . . . . . . . . A . . . . . . . . . . T A . A . ATG . A T . . A . A . . . .
blockSeqs : . . . . AT . T . GTT . . . AT . . . . . . . . . GACTGT TT . TCAA A . . . T ATATA AG . A TA . ATACTGGATGA A . . . . . . . . . . T . T A . . T T AT ACTAAATGT . . . . TAG . . . AAAGAGA G A . . . . . . . . AAT . GGT . G . . . . . . . GC . . . . T . . . . . A . G . . . . . . . . . G . . . . . . . AA . . . G AT . . . . . . . . . . . A . . . . T . G . . . . . . . . A . . . . TG AT T . . . . . . . . . . . . AT . . . . . . . . . . .
blockSeqs : . . . . TA . T . GTT . . . AT . . . . . . . . . ACCGT CT . TACA A . . . T ACATA GG . . TA . TAATTAAGCTG A . . . . . . . . . . A . T . . . T T A TTATTT . . . . CT . . . . . . . A . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . AT T . . . . . . . . . . . . A .
blockSeqs : . . . . AT . T . ATA . . . T . . . . . . . . . ACTGT C . TACA C . . . T AATA G . . AC . TCGAAAGTAA . . . . . . . . . . . A . . . . . G T A TACA . . . . . . . . .
blockSeqs : . . . . AT . . . AT . . . A . . . . . . . . . ATTG C . . T . . . T ACAT G . . T . TCGAAAGTAA . . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . T A . . A . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . T
blockSeqs : . . .
blockSeqCons : TAT*** AATAAAGAAGACAT********** AA** ACTANATAT**** AAGATTTTGAGTACT********** AGCAT** A****** G* GGN**** T***** GT** AGC AA* AA***** **** TAT** ** A** ** AT**** *** TTN* AT T* ATA* ******* A** AAATGGCG******** TTTCTTTCTTTT***** AA**** AC NATCT*** C* AC** AAA A** T*
originalCons : TTTTTTTTT--TATAA-T-T-CTT---AT-TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATT--A-TA--AAGAAAG-AC---A-TATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACT-AGAGTTTTTGGCTGA---TA--C-TTGNAAAGCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGC----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTT--G-AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAA--TA--TTACAATC---CAT-AAAAT-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGC-AATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTGTCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC--CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGG-TT-GCTAAAACGGCGTCCATG-ATTCACTCTTTC-TTTCCTTTTTTTTTTTTTAAAGTCTAAAACAGCAATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-A--TCG-TTTGTA-CCAACACATATCTT--N-ACA-TC-ATTAAACA-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-C-ATTCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
finalCons : TTTTTTTTT--TATAA-T-T-CTTTAT---TTTT-GTATTTT-T-GTAC-ATACATATATA-T---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--AC-A---------TT-CATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAG-AA---TAATTAAT-TA-TGTA--ATTAATAAAGAAGACAT----------ATCTTAGAAA-A---AAT-ATA-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCAA--CAAACTANATAT----C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCA-TTT-ACTAAGATTTTGAGTACT----------TTGNAAGCAT--TTA-CACAA------TATTT-T-TCGATATTTTTCTATA-ATG-TTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTTAA-AC--CTTTGTGA---TCTTGGN----ATA---ATA-TA-TATGCTTTTT-T-GCT--AATA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACTT-----CCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTTGT--AATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGT-GAAA-----TTACAATC----AT-AAAAT-ATAT--GAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTT-GTCA----TTNTCTACAAG-TTTA-A-GTTTG-TGAAGG-AA-AGA-GTT--TGTAGCA--TGT-AACACAT-AAGTTATACG--GTATC--GAAAAAT----AT-TATCAATTTTG-TT---TC-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-ATAAAATTN-CCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TGATA-CACAACATTT-------TGC--CTTACGGATTACTTTTCGTATA--TG-CACTGATTTGGAAATGGCG--------TCCATG-ATTCACTCTTTCTTTCTTTT-----TTTTTTAAAGTCTAAAA----AATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAANATCT---TTTGTA-CCAACC-ATATCTT--N-ACA-TC-ATTAAAC--CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-CA--TCGAGGGTCTTTGATAT-CCTTTTTCCACCCATTTTTGTATAA
Alignments
lowQualScore : 1111 111111 1 22222 111111111 22222222222222 11111 11111111 44444444444444444444444 1 1111 1 111111111 11111 1111111111111 111111 1 1 888888888888888888888888888888888888888888888 2222222 1 22 1111 333333333333 111 1 111 222222222222 1 1 222222 111 22222 1 11 2222 111 1 3333333 1111 222 2222 22222 11 1 1 1 1111 1 11 11 1 22222222222222222 1111111 1 1 11 11111 22 1 33333 111 1 1111 11 1111 2 6666666 1111 1 222 1 88888888888888888888888888888888888888888888888888 3333333333333 1 1111 1 22 1 11 1111 22222 1 222 11 11 11
lowQualScore : 3 44 3 3 44 3 6 7777 3 111111 3 0 2 22 77 33333 6 44 3 44 3 666666666 33333333333333 55555 3 88888888 555 55 3 3 88 44444444444444444444444 4 4 3 7777 55 8888888 8 2 666666666 99999 4 777 4 444 4 4 4 4 777 4 88888 4 2 77 4 4 66 1 9999 2222222222222 777 66 4 66 000000 5 1 222222222222222222222222222222222222222222222 5 8888888 0 5 1 5 3 5 6 11 7777 5 444444444444 5 888888 5 1 5 000 5 5 77 0 1 1 000 111111111111 5 5 2 1 999 77 5 1 5 66 1 77 66 5 555555 0 000 5 9 5 5 77 88888 5 5 33 4444 333 0 66 4 7 4 0000000 4 66 777 8888 222 1111 5 5 00000 5 33 0 2 5 66 0 5 0 0000 5 0 5 6 5 5 77 2 5 5 5 0 66 77 66 5 0 5 66 33333333333333333 3 3 0000000 0 0 11 5 3 5 5 22222 5 5 8888 00 5 5 5 1 77 77 5 5 33333 111 99 1 4444 6 1 99 6 7 22 88 8 8 8 1111 0 9999999 7777 0 3 0 1 999 8 3 0 33333333333333333333333333333333333333333333333333 6666666666666 3 9 4444 6 5 3 77 1 2 1 00 4 99 6 55 6666 6 6 44444 7 1 2 6 6 6 0 000 8 99 22 1 88 0 55
lowQualScore : . .. . . .. . . .... . ...... . . . .. .. ..... . .. . .. . ......... .............. ..... . ........ ... .. . . .. ....................... . . . .... .. ....... . . ......... ..... . ... . ... . . . . ... . ..... . . .. . . .. . .... ............. ... .. . .. ...... . . ............................................. . ....... . . . . . . . .. .... . ............ . ...... . . . ... . . .. . . . ... ............ . . . . ... .. . . . .. . .. .. . ...... . ... . . . . .. ..... . . .. .... ... . .. . . . ....... . .. ... .... ... .... . . ..... . .. . . . .. . . . .... . . . . . . .. . . . . . .. .. .. . . . .. ................. . . ....... . . .. . . . . ..... . . .... .. . . . . .. .. . . ..... ... .. . .... . . .. . . .. .. . . . .... . ....... .... . . . . ... . . . .................................................. ............. . . .... . . . .. . . . .. . .. . .. .... . . ..... . . . . . . . ... . .. .. . .. . ..
lowQualScore : 3 66 3 3 66 3 7 5555 3 999999 1 5 3 88 99 33333 7 66 3 66 3 777777777 11111111111111 22222 6 55555555 222 00 6 6 77 55555555555555555555555 7 0 2 6666 55 6666666 0 0 555555555 66666 0 000 0 222 0 0 0 0 000 0 66666 0 3 22 0 0 55 1 7777 8888888888888 000 11 4 99 999999 0 4 666666666666666666666666666666666666666666666 7 4444444 1 7 4 0 6 0 7 77 2222 7 444444444444 7 111111 7 0 7 000 7 7 99 1 7 9 000 000000000000 7 7 0 9 444 99 7 4 7 00 0 99 33 7 000000 1 000 0 6 1 7 44 66666 6 7 11 3333 666 0 11 4 3 4 1111111 4 11 666 9999 555 2222 0 0 22222 0 88 0 5 0 99 0 0 0 6666 9 2 0 2 0 0 55 5 0 0 0 0 99 55 99 0 0 1 99 44444444444444444 2 2 9999999 0 0 55 0 2 0 0 11111 0 0 4444 33 7 7 7 4 99 99 7 0 33333 777 22 7 2222 7 0 22 7 3 33 88 0 0 0 0000 0 0000000 0000 6 6 6 4 666 0 2 8 00000000000000000000000000000000000000000000000000 1111111111111 8 8 2222 7 0 7 77 0 2 0 77 0 33 7 88 8888 7 7 33333 8 0 0 7 7 7 6 444 0 00 22 4 66 6 00
consensus : TTTTTTTT-T--TATAA-T-TCTTT--AT-TTTT-GTATTTT-T-GTAC-ATACATATAT-AT---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--A-CA---------TTCATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA-TAATTAAT-TA-TGTA--ATT-AAT---AA-AG-AAG-AC---A-TATCT---TAGAAA-A---AAT-AT-A-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCATTT-ACTA-AGA--TTTTG---G---G----TACTT---T-GN--AA-GCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TT-AAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTT-AA-AC--CTTTGTGA---TCTTGGC----ATA---A-TA-TATATGCTTTTT-T-GCT--AA-TA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTTGNAATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGCGAA--A---TTACAAT---CAT----AAAA-T-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTTGTCA----TTNTCTACAAG-TTTA-A-GTTT-GTGAAGG-AA-AGA-G-TTA-TGTAG-CA-ATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTGTT---T-C-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-AT-AAAA-TTNCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTTGATACTATGC----CTTACGGATTACTTTTCGTATA-ATG-CACTGATTTGGTT-----AAACGGC-----GTCCATG-ATTCACTCTTTCTTTCCTTTTTTTTTTTTTAAAGTCTAAAA----AATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAA-ATCTTTTGTA-CCAAC-NATATCTT--N-ACA-TC-ATTAA--AC-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-CA--TCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
Reference ( family-6708 ) : TTTTTTTT-T--TATAA-T-TCTTT--AT-TTTT-GTATTTT-T-GTAC-ATACATATAT-AT---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--A-CA---------TTCATT---AC-T--GT-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-CAT---------A--AAGAA-TAATTAAT-TA-TGTA--ATT-AAT---AA-AG-AAG-AC---A-TATCT---TAGAAA-A---AAT-AT-A-AT-GTT-A-TA-CCT---T-AAG-A---AT-GTTT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--ANATAT-C---AAA--AAC-ATT--ATCAT-ATAG-TG-TCCATTT-ACTA-AGA--TTTTG---A---G----TACTT---T-GN--AA-GCAT-TTA-CACA-----A-TATTT-T-TCGATATTTTTCTATA-ATG-TT-AAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ANTTTTGG-G---TTTT-AA-AC--CTTTGTGA---TCTTGGN----ATA---A-TA-TATATGCTTTTT-T-GCT--AA-TA-GAA-TAAGGAAANT--TTTCTT-AAAC-AACT-----TCCAG---TAG-CATTTCCCAAGTAATACA-ATTC-T-----TTTGTAATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AAA------TCTCCCCAAAAG-GC--TAGGGTGAA--A---TTACAAT---CAT----AAAA-T-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTTGTCA----TTNTCTACAAG-TTTA-A-GTTT-GTGAAGG-AA-AGA-G-TT--TGTAG-C--ATGT-AACACAT-AAGTTATACG--GTATC--GAAAA--AT--AT-TATCAATTTTGTT---T-C-TTTGT-ACA-AATANAA-AAGCAT-TT-TC---ANA-AT-AAAA-TTNCCAACAATTTTTT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAGTTTTCC-----ATTTG---CC--TTTTTGAG----T-TNT--GGGC-TATGAAACTCCT-TTTT-CCTTC-AAAACT-TG-ATACACAACATTT-------TGC----CTTACGGATTACTTTTCGTAT--ATG-CACTGATTTGG-------AAATGGC-----GTCCATG-ATTCACTCTTTCTTTC----TTTTTTTTTTAAAGTCTAAAA----AATTTTAGTCTTTT----TGAT-CTTCTGTTGG-NATCCTGGAACAAGACGATGATNGACTTCAAAAANATCTTTTGTA-CCAAC-CATATCTT--N-ACA-TC-ATTAA--AC-CATTTGAANGTTCC-CA-TT-CTTTTAAAACTAAGT-CA--TCGAGGGTCTTTGATA-TCCTTTTTCCACCCATTTTTGTATAA
gi|1 : TTTTTTTT-T--TATAA-T-TC-TT--ATATTTT-GTATTTT-T-GTAC-ATACATATAT-AT---ATATA-AACA-ACACAATCA--TT-----C-AC--C-C--A-CA---------TTCATT---AC-T--TG-GCA-C-C-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACTTAATA------A-TAT---------A--AAGAA-TAATTAAT-TA-TGTA--ATT--AT---AA-AGAAAG-AC---A-TATCT---TAGAAA-A---AAT-AT-A-AT-GTT-A-TA-CCT---T-AAG-A---AT-GCTT-AA-AAT-AG-GTTTTTCACA-CAAA-C---AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTT-ACTAGAGT--CTTTGGCTG---G----TACTT---G-GA--AA-GCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-AT--TT-AAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTT-AA-AC--C-TTGGGA---TCTT-GC----ATA---A-TA-TATATGCTTTTG-T-GCT--AA-TA-GAATTAAGAAAAAT--TTTCTT-AAAC-AACTG----TCCAG---TAA-CATTTCCCAAGTCATACA-ATTC-T-----TTTGGAATCTGTG-TAATCC-TTT----CAACAG-ACTGTAGCCATTTT--A-C---AAA------TCTCGCCAAAAGAGC--TAGGGTGAACTA---TTACAATC--CAT----AAAA-T-ATG-ATGAG--A--ATTGTTTC-T-TTCCA-CA---TTA-CAAAAAG-AC-ACTTTGTCA----TTCT-TACAAG-TTTA-A-GTTT-GTGAAGG-AA-AGA-GTTT--TGTAG-CA-ATGT-AACACAT-AAGTAATACGTAGTATT--GAAAACCAT--AT-TATCAATTTTGTTATCT-C-TTTGT-ACA-AATAAAAGAAGCAT-TT-TC---AAA-ATAAAAA-TGTCCAACAATTTTTC-CTGAA-AT-AGTTTCATCC--GA--GA-TAAATTCTCC-----ATTTG---CC--TTTTTGAG----T-TTT--GGGC-TATGAAACTCCTATTTT-CCTTC-AAAACTATG-ATACACAA-ATTTGATACTATGC----TCTACAG-TTACTTTTCGTATA-ATA-CA-TGATTTGGTTTGCTAAAAC---------TCCATG-ATTCATTC---------------ATTTTTTAAAGTCT--AA----AATTT--GTC-TTT----TGAT-CTTCT-TTTG-AATCCTAGAACAATACAATGATAG-TTTCAAGAA-ATTGTTTGTACCCAACAGATATCTT--A-CCATTC-ATTAA--ATACATTTAAAAGTTCC-CA-TT-CTTTT---ACTAAGT-CAATTCAAGGATTTTTGATA--CCTTTTTCCACCCATTTTTGTATAA
gi|10 : TCCTTTT----CAACAGCACTGTA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAGGGTGAT--A---TTACAAT---CAT----AAAA-T-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTTGTCA----TT-TCTACAAG-TTTA-A-GTTT-GTGAAGG-AA-AGA-G-TT--TGTAGCC--ATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTGTT---T-CTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---ATA-AT-AAA
gi|11 : TTTTT-T--TATAA-T-TCTTT--AT-TTTT-GTA----------C-ATACATATAT-AT---ATA---AACA-AGACAATCA--TT-----C-ACACC-C--A-CA---------TTCAT----AC-C--GT-GCA-C-C-TT-AATCA--A--CCAGCA-A-TT--ATT-TTAG-TTTTCACT-AATA------A-CAT---------A--A-GAA-TA-TTAAT-AC-TGTA--ATT-AAT---AA-AG-AAG-AC---A-TATCT---AGAAAA-A---AAT-TT-A-AT-GTT-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATt
gi|12 : ---ATATA-ATCA--TAC--TCA--TT-----C-GC--A-C--G-CAGCATTTATGTTCATTTATAC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-T-TT--ATT-TTAG-TTTTCAATAAATA------ACCATGTTACATTGA--ACGAA-CA-----------GTG--ATC-AAT---AATAG-AAT-A----A-TA-CTGGATGAAGA-C---AAT-ATAA-AC-TTT-A-TACCCT---T-AGG-T---AT-GTTT-AA-AATAAG-GTTTTTC-------------------------AA--AAC-ATT--ATCAT-ATAA-TG-TC
gi|13 : tgcAAC----AATTTT-GTCTTGTAATATGGC-CTTCTGT--G-C-TTTTGAAATAAGA--ATG-TCGAAGTTAAAAAAAGTCTTTATA-TCAAA-CACACCTT--CTACA-TC-ATTAA--CA-CATTTCAACGTTTC-CA-TT-Cag
gi|14 : TTTTTTTT-TAATATAAAT-TATTT--AT-TTTT-GTATTTT-C-ATAC-ATACATACCG-GT---ATATA-AACA-ACACAATCA--TTCA---C-AC--C-C--A-CA---------TTCA-T---AC-T--GT-GCA---C-CT-TATGCA-A--CCAGCA-A-TT--ATT-TTAG-TTTTCAC-TGATA------A-Cagggttctaatgcccctagccatccagttaatttgtagcaaaaatc
gi|15 : aTTTTATTTAT--TTTAA-G-TTTTT--AT-TTCT-ATATTTT------C-ATAC--ATAT-AT---ATATA-AACA-ACACAGTCA--TTCTA--C-AC--C-T--A-CA---------TTCATA---CC-T--GT-GCA-
gi|16 : TTTTT-T--TATAA-T-TCTTT--AT-TTTT-GTATCTT-T-ATAC-ATAC--ATAT-AT---ATATA-AACA-ACACAac
gi|17 : ACTGCA-CCATTTT--A-CAA-AA-------TCTCCCCAAAAG-GC--TAG
gi|2 : ttcttttTTTTTTT-T--TATAA-T-TCTTT--AT-TTT--GTATTTT-TTGTAC-ATACATATAT-AT---ATATA-A-CA-ACACAA-CA--TT-----C-AC--C-C--A-CA---------T-CAT----AT-T--G--GCA-C-C-TT-AATAC--A--CCAGCA-A-TT--ATT-TTAGATTTTCACTTAATA------A-TAT---------A--AAGAAATAATTAAT-TACTGTA--ATT-A-T---AA-AG-AAG-AC---A-TATCT---TAGAAA-A---AAT-AT-A-AT-GTT-AGTA-CCT---T-AAG-AT--AT-GTTA-AA-ATT-AG-GTTTTTCA-A-CAAA-CT--AAATAT-C---AAA--AAC-ATT--ATCAT-ATGG-TG-TCCATTTTACTA-AGAGTCTTTG---GCTGG----TACTT---T-GA--AAAGCAT-TTA-CACA-----A-TATTT-T-TCAATATTTTTCTATA-ATG-TTTAAAC-AAATT----A-A--T--GGCA-T--CA-GAA-ATCTTTGG-G---TTTTTAA-AC--CTT-G-GA---TCTTG-C----ATA---AATA-T-TATGCTTTTTGT-GCT--AAATATGAA-TAAGAAAATT--TGTCTT-AAAC-AACT-----TCCAG---TAA-CAATTTCCAAGTAATACA-ATTC-T-----TTGG-AATCT-TG-TAATCCTTTT----CAACAG-ACTGTAGCCATTTT--A-CAA-A--------TCTCGCAAAGAG-GC--TAGGGTGAA--ACTATTACAAT---CAT----AAAAAT-ATG-ATGAGATA--ATTGTTTC-TCTTCCA-CA--TTTA-CAAAAAGA-C-A-TTTGTCA----TTCTTTACAAG-TTTATA-GTTT-GTGAAGG-AACAGA-G-TT--TGTAG-C--ATGTGAACACAT-AAGTAATACG--GTATT--GAAAA--CC--ATATATCAATTTTGTT---TTC-TTTGT-ACA-AATAAAA-AAGCAT-TT-TC---A-A-AT-AAAA-ATGTCAACAATTTTTTCCTGAA-AT-AGTTTCATCC--GA--GA-TAAA-TTTCC-----ATTTG---CC--TTTTTGAG----TGTTT--GGGCGTATG-AACTCCT-TTTTCCCTTCAAAAACT-TG-ATACACAA-ATTTGATACTATGC----TCTACAG-TTACTTTTCGTAT--ATA-CA-TGATTTGG---------TTGGCTAAAACTCCATGAATTCATTC--------------ATTTTTTTAAAGTCTAAAA-------TTTGGTC-TTT----TGAT-CTTCT-TTGA-AATCCTAGAACAATACAATGATAG---TCAAGAAATTGTTTTGTA-CCAACAGATATCTT--A-CCA-TC--TTAAATAC-CATTTAAAAGTTCCGCA-TTACTTTTA----TAAGT-CT--TCAAGGGTTTTTGATA---CTTTTTCCACCCATTTTTGTATAA
gi|3 : TTT-T--TAAGA-T-GGTTT--AT-TTTTTGTATTTT--------ATACACATGT-TTCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--A-CA---------TTCACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA-CAATGAAT-TA-TGTA--ATT-TCG---AA-AGTAA----------ATGT---T-GAAT-A---AAT-AT-T-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCATTA-ACCA------TTTTG---A---A----T-------T-GC--AA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TT-AG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTT-GA-GT--CTTTGTGA---TCTGGGG----ATATTAA-GA-T-TATGCATTTT-T-GCA--AA-TA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTTGTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTACAAA--A-----ACAATAGTCGTTTAGAAAA-T-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAAGCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-TATA--C--ATGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCGTT---T-C-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-AT-AAAA-TTGCCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT----CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG-------AAATGGC-----GTTCATA-ATTTACTCTTTCTTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCTTATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A--CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-CA--TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|4 : TTTT-T--TAAGA-T-GGTTT--AT-TTTTTGTATTTT--------ATACACATGT-TTCAAACATA-AATTTACATA--CA--CT-----CGAT--C-T--A-CA---------TTCACT-------------CA-T-T-CG-TA--------CCA--A-A-GT--A-----AG-TTTTCTCTGAGCACCTTCTG-CATTCCCCC---A--AATAA-CAATGAAT-TA-TGTA--ATT-TCG---AA-AGTAA----------ATGT---T-GAAT-A---AAT-AT-T-TT-TTT-C-TT-TTT---C-ACG-GTATAT-GTAT------T-AT-GATCTTCA-A-CAAATCT--ACTTATTC---AGT--TAT-ATA--ACCATTACAGGTGACCCATTA-ACCA------TTTTG---A---A----T-------T-GC--AA-------TA-AATA-------TATTT-TCTCGAT-TTTTTCT-TC-AT--TT-AG-C-AAATTTTAAA-AGCT--GGCA-T--CT-AAC-AATTTGGG-G---TTTT-GA-GT--CTTTGTGA---TCTGGGG----ATATTAA-GA-T-TATGCATTTT-T-GCA--AA-TA-AAA-TACGGAAATT--CTTCTT-TGAC-AACT------CCAT---CAG-TATTGCCTA-GTAACATA-ATTT-TCTTTTTTTGTGATTT-TAATAATTCTTTTTTTTCAAT----TTGTA-CTATTTT--A-CAA-AAAAACATATTTTTCCACAAG-GG--CATTACAAA--A-----ACAATAGTCGTTTAGAAAA-T-A-----GGGA-ATGACTGTCTC-TCTCT-------TTTAGCAAAACGAAC-A-CAAGCCA----TTGTCTATAAG-T--G-A-GTTT--T-----------A-G-CTA-TATA--C--ATGT-AACACATTAAGTTATACG--GTATC--TCAAA--ATGAAT-TA-CG--CTCGTT---T-C-TTTGTTGCATAATGTCT-A--CGT-TC-TT---TTA-AT-AAAA-TTGCCAACA--TTTTT-CTGAA-AT-AGTTTCA-CT--GA--CA-TAAGTTTTCCCACTTATTTT---TC--TTTT-GAG----T-TGT--GAGC-TAGGAA--TCTT-TTTT-CCTTC-AAAACT-TG-TT-TACAACATTT-------TGT----CTTCCGGATGATCTTTCATAT---TG-CACTGATTTGG-------AAATGGC-----GTTCATA-ATTTACTCTTTCTTTCCTTTTTTTTTTTTTAA----TAAAACAGCAATTTTAGTCTTTT----TAAT-CTTTTGTTAG-TATTTTGAAATAAGTCGGTAATTGACTTCAAAAATATCTTATGTA-CCAAC-CATATCTT--T-ACA-TT-ATTAA--A--CATTTGAATGTT-C-CA-TT-CTGCCAAAACTAAGT-CA--TCGAGGGTCTTTTAAA-TCCCCTGTCTACCCA-ATTTGTATAAa
gi|5 : TT-T--TATAA-TGTCTTT--AT-TTTT-GTATTTTAT-GTAC-ATACATATAT-AT---ATA---AACACACACAACTT--TG-----C-AA--CAC--A-CA---------TACAAC---ACAG--GC-GCA-C-T-CT-AATAC--AGACAAGCA-C-TT--ATGGCTAG-TTT-CACT-AATA------A--AT---------A--A-GAA-TA-TTAATACC-TGTA--ATA-AAT---AA-AG-AAG-ACCCCA-TATCT---ATGAAA-A---AAT-AT-A-AT-GGG-A-TA-CCT---T-AAG-A---AT-G-TT-AA-AAT-A--GTTTTTC--A-CA----T--ACA----C---AAA--AAC-A-T--ATCAT--TAG-TG-TCCA-TT-ACTA-AA-------G---A---G-----A--T---T-GG---A-GCA--TTA-CACAAAGACA-CA----T-TCAATATTTCCCTA
gi|5 : -CATTTCC-AAGTAATCCA-ATTC-T-----TTTTGAATCT-T--TAACCCTaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|5 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaacTT--AGCAACAAA------TCTCCCCAAAAG--C--TAGGGTTGA--A---TTACAAT---CAT----CAAA-T-AT--A----A-A--TTTATTTCCTCTTTCA-CA--TTTA-CAAAAAGAAC-GTTTTGTCA----TTTTC-ACA------A-A-GTTTGGTGAAGGCAA-AGA-GTTT--TGTAG-C--AAGT-AACACAT-AAGTCATAC---GTAT-------G--AT--A--TATCAAGTTTGCT---T-C-TTTGT-ACC-AA-ATAA-AAGCAT-TT-TTCCGAAA-AT-AAAATTTTCCAACAA-TTTTT-CTGAACAT-AGTTTCA-CCTAGAAGGA-AAAG----AC-----ATTAG---AC------AGAGAACTT-CTT--GGGC-CATGAACTTCC---TTT-CCTTC-AAACTC-TGAATACACAA-ATCTGATA---TACTCAGCTTACAGGTTAATTTCTGTATACATGACATTG-CTTGGTTCT---AAAC---------TCCATG-A-----------TTTC----ATTTCATTTTAAA-TCT--AA----AATTTT--TTCTTT----TGATCCTTCT-TTGGAAATCCTAGAACAAAACAATGATAG--TTCAAAAA-AT-GTTTGTA-CCAAC-AATATCTTTCA-ACA-TCAATTAA--AC-CCTTT-AAAGTCTC-CATTT-CTTTTGTTACTAAGTCCAT-TCAAGGA----TGATACTCTTTTTTCCA-CCACTTTTGagagaataaacaaaacaacaagaagacaaaaagaattagcaacaaatctccccaaaagctagggttgaattacaatcatcaaatataaatttatttcctctttcacatttacaaaaagaacgttttgtcattttcacaaagtttggtgaaggcaaagagttttgtagcaagtaacacataagtcatacgtatgatatatcaagtttgcttctttgtaccaaataaaagcatttttccgaaaataaaattttccaacaatttttctgaacatagtttcacctagaaggaaaagacattagacagagaacttcttgggccatgaacttcctttccttcaaactctgaatacacaaatctgatatactcagcttacaggttaatttctgtatacatgacattgcttggttctaaactccatgatttcatttcattttaaatctaaaattttttcttttgatccttctttggaaatcctagaacaaaacaatgatagttcaaaaaatgtttgtaccaacaatatctttcaacatcaattaaaccctttaaagtctccatttcttttgttactaagtccattcaaggatgatactcttttttccaccacttttggtaataa
gi|6 : ttttataatgtctttatttttgtattttatgtacatacatatatatataaacacacacaactttgcaacacacatacaacacaggcgcactctaatacagacaagcacttatggctagtttcactaataaataagaatattaatacctgtaataaataaagaagaccccatatctatgaaaaaatataatgggataccttaagaatgttaaaatagtttttcacatacacaaaaacatatcattagtgtccattactaaagagattggagcattacacaaagacacattcaatatttccctaaacaagaaattggttttaagacacaaagagaaagcagaaacaagaagaagataaaaccttttggcaatatttccacacagaccaggtaaaccatttccaagtaatccaattctttttgaatctttaaccctagagaataaacaaaacaacaagaagacaaaaagaaTTTTTTTT-T--TCTAT-T-CTTTT--AT-TTTT-GTATCTT-TAGTACTATGCATATAT--T---ATATA-A-CA-A-ACAATCAC-TT-----C-AC--C-CTCC-CA---------TTCAT----AC-TTAGTTGTA-T-CTCTATATAC--AGACCTGCA-T-TTTTATT-TT----TTTGATTTCATATAG---A-CAT---------ATGAATAT-TATTTCAT-T--TTTA--ATTTAAT---TA-AG-CTG-A--------TCT---TATTAC-A---TATTGT-A-CT-GTTTA-TA-CTTCTTT-AAGTA---ATTGTTT-AACAAA-AT-GTTTTTCA-T-CAA---T---TATTT-C---AAATTACT-ATTTTATTAT-CT----G-TTCCTTT-ACTA--GA--TTTTT-------T----TACTTATAT-GCCTAT-AC-T-TTA-TCTA-----C-TACTTCT-TCACCATTT--CTATA-ATG-TT----T-AGAGT----A-A--T--GGCC-T--GG-TCA-AATTTTGG-G---TTTT-AA-AC--CTTAG-GA---TCCTG-C----ATA---A-TA-TATATGCTTTTT-T-GCT--AA-TA-GAA-TAAG-AAAAT--TTTCT--AAAC-AACT-----TCCAG---TAA-CATTTCC-AAGTAATACA-ATTCTT-----TTTGAAATCT-TG-TAATCCTTTT----CAACAGCACTGTA-CCATTTT--A-C-A-AAA------TCTCCCCAAAAG-GC--TAGGGTGAT--A---TTACAAT---CAT----AAAA-T-AT--ATGAGA-A--ATTGTTTC-TCTTTCA-CA--TTTA-CAAAAAGAAC-A-TTTGTCA----TTTTCTACAAG-TTTA-A-GTTT-GTGAAGG-AA-AGA-G-TT--TGTAG-CA-ATGT-AACACAT-AAG-TATACG--GTATT--G-AAA--AT--A--TATCAATTTTGTT---T-CTTTTGT-ACA-AAT--AA-AAGCAT-TT-TC---AAA-AT-AAAA-TATCCAACA--TTTGT-CTGAA-AT-AGTTTCA-CC--GA--GA-TAAATTTCCgtaataa
gi|7 : t-AAATT----A-A--TTTGACA-TTTCA-AAATATTGTTGATG---TTTT-AA-ACACCCTTGTGACGATCTTGGTGCTGATA---A-TAACAT-TGCGTTTT---GCTTAAA-TA-GAA-TAA--AAATTCTTTTCTT-GAACCAACTATTATTCTGGATATAAACATGTCCAAAGTAATACACACT--T-----TTTG-AATCT-TG-TAATTCCTTC----CAACAGCACTGTA--CATTTTTAA-C-A-AAA------TCT-CCCAAAAG-GCTTTAGGGTAAT--ATT-TTAC-AT---CAT----AGAA-TGATTAATGAGA-A--ATTGTTTCTTCTTTCAGCATGTTTA-CTAAAAGAGCTA-TTTGTCAGTTCTTTCTTACAAGTTTTA-ATGTTT-GTGAAGG-AA-AGATG-TTAATG-AG-CAAATGT-AACACAT-AAGCTATACA--G-ATCTTGAAAAACAT--AT-AATCAATTTT--------------------AATACAA-AAGCATATTGTC---ATACAT-AAA-----TCGATAAT---------AG-GTCAGTTT-A-CC--GA--GATTAAATTTCCC-----ACTTGTGTCCTTTTTTTGAT----T-TATGGGGGC-TATG-AACTC
gi|8 : TTTTTT-T--TATAA-T-TCTTTTCAT-TTTT-GTATTTT-T-GTAC-ATACATAT-T-------TATA-AACA-ACACAATCAAGTTCCACCC-AC--C-C--A-CA---------TTCATG---AC-T--GT-GCA---A-CT-TAAATCAA--CCAGCACATTT--ATT-TTAG-TTTTCAC-TAATA------A-CAT------------AAGAA-TA--TAAT-AC-TGTACCATT-AATAAGAA-GG-AAGAAC---A-TATTC---TAGAAACA---AAT-A--A-AT-G-T-A-TA-CCT---TAAAG-A---AT-GTTTAAA-AAT-AG-G-TTTTCA-ACCAAA-CCTAAAATAT-CATAAAG--AACTATT--ATCAT-ATAG-TGTTCCATTTAACTA-AGAG-TTTTG---G---GAGTTTACTT---TGGA--AA-GCATCTTACCACA-----ATTATTT-T-TTGTAATATGTCTATACATGTTT-AAACTAAATT----ATA--TCGGGCATT--CAGGAA-AGTTTTGG-GGTTTTTT-AACAC--CTTTAGGT---CCTTGCT----A-A---A-TA-TA-ATGCTTTTT-TGGCT--AA-TAGGAA-TAATGAAAAT--TTTCCTAAAAC-AACT-----TCT-G---AAG-AATTGCCCAGGT
gi|9 : tttaTTTTTTTT-T--TATAA-T-TCTT--------------TTTT-T-GTAC-ATACATTTATAAT---ATATATAACAGACACAATCA--TTCA---C-AC--C-C--ACCAT--------TTCA-T---AC-T--GT-GCAGCAC-CT-TATAC--A--CCAGCA-A-TT--ATT-TTAG-TTTTCA--TAAT-------A-CAT---------A--AGGAA-T-ATTAAT-TACTGTA--ATT-AAT---AACAG-AAG-AC---ATTATC----TAGAAA-AAACAAT-AT-AGATGGTT-A-TA-CCT---T-AAG-A---AT-GTT---A-GAT-AGAGTTTTTCA----AAA-CT--AAATGT-C---A