lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111 111111111111111111111111 11111111111111111111111111111111 11111111111111111111111111111 1111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3 2 1111 1111 333333 111 5555555555555555555555555555555555555 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 111 111 333 333 1111 1 33333333333333333333333333333333333333333 1 1 111 2 66666666666666 333 1 1 55555555 11 1 22 1 22 22 1 1 33333333333333333333 2 88888888888888888888888888 222222 333333333 33 1 1 33 111 4 66666666666666666 2 333 2 2 1 2 2 1 33333 22 44444 1 222 1 77777777 4 2 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 2 2 1 2222 2 4444 2 4 11 55555 33333333 33 5555555 1 666 4 222222222222222222222222222222222222222222 11 1 2 33 4 4 55 5555555555555 1 2 4 111111111111111111111111 333 88888888888888888888888888888888 33333 2222222 00000000000000000000000000000 2 2 4 2 2 2 1 33 44 0000000000000000000000000000000 4 2 222 2 2 4 22 33333333333 66666666666666666666666666666666666666666666666666 33333 2 33333 555555 22 2 2 2 4444 2 88888888888 5555555555 4 2 5555555555 1 6666666666 44 11 999999999999999999 1 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333 222 4444444 2 2 4 2 1 3333
lowQualScore : 4 4 2 0000 44 3333 1 77 5 0 5 5 5 777777 888 1111111111111111111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 3 111 111 333 2 000 2 4444 0 22222222222222222222222222222222222222222 2 0 5 666 5 00000000000000 6 111 0 2 0 44444444 33 5 4 2 3 99 66 3 6 99 99 0 0 99999999999999999999 3 0 11111111111111111111111111 3 888888 333333333 5 00 0 8 6 55 777 0 55555555555555555 5 666 0 8 2 5 0 8 3 77 44444 77 33333 5 111 6 5 2 33333333 0 0 7 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 0 0 5 2222 0 7777 0 0 77 6 22222 88888888 00 8888888 5 222 6 0 6 333333333333333333333333333333333333333333 3 3 88 5 0 00 0 0 55 5555555555555 5 7 3 0 444444444444444444444444 7 444 22222222222222222222222222222222 44444 8888888 66666666666666666666666666666 0 6 0 6 0 8 3 0 5 00 2 6 33 1111111111111111111111111111111 3 0 0 666 6 3 6 0 0 2 0 77 33333333333 55555555555555555555555555555555555555555555555555 888 77777 3 0 11111 777777 55 33 0 0 0 1111 0 66666666666 4 9999999999 4 66 0 0 8888888888 5 3 0000000000 33 33 333333333333333333 5 4 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 999999 111 8888888 0 0 0 0 5 7777
lowQualScore : . . . .... .. .... . .. . . . . . ...... ... ..................................... .................................................................................. . . ... ... ... . ... . .... . ......................................... . . . ... . .............. . ... . . . ........ .. . . . . .. .. . . .. .. . . .................... . . .......................... . ...... ......... . .. . . . .. ... . ................. . ... . . . . . . . .. ..... .. ..... . ... . . . ........ . . . .................................................................................................................... ... . . . .... . .... . . .. . ..... ........ .. ....... . ... . . . .......................................... . . .. . . .. . . .. ............. . . . . ........................ . ... ................................ ..... ....... ............................. . . . . . . . . . .. . . .. ............................... . . . ... . . . . . . . .. ........... .................................................. ... ..... . . ..... ...... .. .. . . . .... . ........... . .......... . .. . . .......... . . .......... .. .. .................. . . . .......................................................................................................................................................................................................... ...... ... ....... . . . . . ....
lowQualScore : 3 4 2 6666 66 9999 5 99 7 4 7 7 7 444444 000 7777777777777777777777777777777777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 2 000 555 222 5 222 5 8888 0 00000000000000000000000000000000000000000 5 0 0 555 2 55555555555555 5 000 0 5 0 00000000 88 2 8 8 3 55 77 2 7 88 88 0 0 22222222222222222222 2 0 55555555555555555555555555 2 888888 444444444 6 88 8 2 0 00 222 0 66666666666666666 2 555 0 5 5 5 0 5 3 77 33333 55 55555 0 000 0 0 5 55555555 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 0 0 0000 0 0000 0 0 55 0 55555 55555555 00 0000000 0 555 0 0 0 555555555555555555555555555555555555555555 0 0 55 0 0 00 0 0 00 3333333333333 0 3 7 0 777777777777777777777777 3 777 55555555555555555555555555555555 55555 0000000 00000000000000000000000000000 0 0 0 0 0 5 0 0 5 55 5 0 00 0000000000000000000000000000000 0 0 0 000 0 0 0 0 0 5 0 55 55555555555 55555555555555555555555555555555555555555555555555 555 00000 0 0 00000 555555 55 00 0 0 0 0000 0 00000000000 0 5555555555 0 55 0 0 0000000000 5 0 0000000000 00 55 000000000000000000 5 0 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 555555 000 0000000 0 0 0 0 5 5555
consensus : AAT-ATAGTTCCTGTTGC-AAGGCTG----TTTGAATT--AGTGA--AT-CAGT-G-TTG-G---TT-ACT--GTTCAT-C---------A-CAA-TT-TA-A---ATA-------GCCTAAGGATATAT--A-CACATGTATTA-TA-T-TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAAG-TTCG-NTAT--AAAACCATAT-T-CCAGCATA-TAAGCGGAGGAGTTCTGAN-TTCAGT--A-TGAA-ACCA---TGTCTT-GA-GAAA--AA-TCACTA---TATNTGGT-CACCAT-TGGGTGCTT-TTAAAGTGCAAG-CAT-TGC-AGTTCT---TTATGCATATA-GACTATA-TCC-CA-GCCTC--TTCAGC--TCCATTTGGAAAGATT-TTC-CAGCA-TTGCTGGAAGAAT-CTTTCTT-CCTGACATGATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAANCTCCTGATGATTA---ATNT-AATTC-TA-AT-CGACTT------GCAGG--AGA-TTTTATA-TTTCACAAA-CGAGATGATATTTGT-TTGTTCACAAAATT-AAATCTA-ACATCA-A--CAT-T-TCATTTTC-GTCAAAGTAAATCGATTATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCATGTTAAACTTCGCNCTTATTGTATTATTTGTTATTTAATCGATTACGA-TTTTGAGTAATCG-TGCCACATCCCTTGAAAC-ATATAAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCNGTN-TTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACTATAGTAACTATCTGATAGGTAAAAC-GTC-GCCAATA-CAATATATTATG---AAA--CTCGGA-----------ATTAAG------------GAATTCATCATCTAACACGAATNGGGNCTTGTTTTCGTTTTTGTAGGTAGGTTTTCACCATTGATTTAGATATTCTATGTATCACTCTGTCTGCCTGGTCTGT-CTGNTCTGCGCAC-TAAACATATATATATTTGTATTCTACCACCAAAATGACTTTACAATCC-CAATTCATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT-TGC--AAATAAAGGACG--GCCTTGNAACCACCAG---GTTTNGNTTTAAGTGCCCTGGAAGTACCTAAATGAGTG-TGACAAA--GCAACAA--A--ATGAT---TAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAAT--ATATATTG-ATA-AT--TGA-GTG-CGCTAANTTCA----TTTACTATTCTTNNTTCTAACGTTTCACTTTCTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAATCTAGCAGCGACTTCTGGAGAGAACAAACAAATCAACATACAACTCGGGTAGAACGATGAAA-TACTA--GAATC-AAAGCA--TTAACT--TCCTT--TAAACTANGTACTTTATTGATAAAATATCTGGTTGGTATTCNTAGTTGAAGGACTACACNAAAGACGAAGAGTTTCCAAAAAGCGTTTCNTCAAGCCAGTACCGTAAGA-AAGAGGGATCANTGGGATGTGTGNCCGTCNATATCANCACCAGCNAATCATGTCGTNGGGAGGCAGAGCCGGGGGTGGAGGGGTGGAGGANNAGCNTCTTCTGGTACCGACTTTCAAGGGTAGAGAAGGTCATGGAGGGATTGAGNAATAGATCGNAGTATAANCAACCAGAGGNNTAGACTG-CCACACAGAAAACGGATTGTCGCCGGATTTTNTTGTGACNAGCTAGGCCAGA-CTNNAGTAATGTTATTTTTTCCTACTCCAGTTTTTACNCCCGAAAGAATAANNTACGTTTGANAGGANNGGGTAGATTA-TCTATCNTATCTATCT--ATNTTGTCCGGAAAGCNGAATGAANGTAGGGGAA-ANGCCAAGTGTTGGGAAGTGTGTCTC--CGAGAANAAACGTNCCTAGAGGGTAAT-TACANNTTCAACCACC---GCGGTGAGCGAATTCTAANATTNTGAGTTGGGTAAGTGCNNTNCGTACTAGTGATNCAAAGACATATGGTGGTGATTGCCGACTTGTTTTGTTGTGGACAGGACGGCTGGAA
Reference ( gi|1 ) : AATCATAGTTCCTGTTGCCAAGACTG----TTTGAAAT--AATGA--AT-CAGT-G-TTG-G---T--ACT--CTTCAT-C---------A-AAA-TT-TA-A---ATA-------GCCTAAGGAT-TATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCT-TTAT-TACAACCATAT-T-CCAGCACA-TAA-TGGAGGAGTTCTGAT-ATCAGT--A-TGAA-ACCGATTTGTCTT-TATAAAA--AATTCACGA---TATT-GGTACACCAT-TGGATTCTT-TTAAAGTGCAAGACATCTGCTAGTT-T---TTATGCATAAT-GACTATA-TCC-CACGCCTCCTTTCAGC--TCCACTTGGAAAGATT-TTC-CAGCATTTGCTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACT-CTGAT-ATTA---ATCG-AATTCGTA-AT-TGACTT------GCA-G--AGATTTTTATATTTTCACAAACCGAG-TGGTATTTG--TTGTTCACAAAATTAAAATCTAGACAGCA-AC-CAT-TGTCATTTTCAGTCAAAGTATAACGATTA-TAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGCCTTTATTGTATTA-TTGTTAATTAATCGATTACGA-TTTGAAGTAATCGTTGCCACATCCCT--AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATTACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACT-------TCAT-TGATA-ATAAAAAAGTCCGCCAAGAACAATGTAT-ATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTAACACAAATTGGGAC-TGTTTTCG-TTT-GTAGGGAGG-TT-CAC-ATTGATTTAGATAA-C-ATGTATCACTCTGTCTGCCTG-TCTGTGCTGGTCTGCGTATGTAAATATATA-AT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAAC-ACCAAAGCGTTTTGTTTTAAGTGCCCTTGA-GTACCTAAA-GAGTGCTGACAAACGGCAACAA--A--ATAGT---TATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAAA--ATATATTGTATAGATTGTGATGTGTCGCTAGA--CAGGGGTTTACTATTCCTTTTTCTAACGTT-CGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAGA-GTCT-CTTGCAAAAGAGTAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTAC-TTA-TGAT-ACATATCTGGTTGATATTCTTAATTGAA-GAC-ACACCAAAGACG-AGAGTTTC--AAAAGCGCTTTTTC-AG-CAATACC-T-AGATGAGAGGATTCA---GGATGTGTGGCC--CAATA--AGCACTAATAAATCA--TT-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGAC-TTC-AGG---AAGAA-GTCA-----AGACCCAGAAATAG-TCGAAA---AATCAACCAGAGGCTTAGACTACCCACACAG-AAA--AAT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAAT-CTATTTCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGAA-ATC---T--ATTATTCTAT-CTATTTATCTGCATCTT-TCCAG-AAGCTGAATGAAGATAGCGGAACAAG-CAA-T-TTGGGCAGTGTGTCTCAACG-GAAT-AACG-GTC-AGAGGGTAATCTACAACTTCAA-CACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTA--TA-TCTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAAC
gi|5 : AAT-ATAGTTCCTGTTGC-AAGGCTG----TTTGAATT--AGTGA--AT-CAAT-G-TTG-GT--T--ACT--GTTCAT-C---------A-CAA-TT-TA-AT--ATA-------GCCTAAGGATATAT-----ACATGTATTA-TAC---ACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA--TTCTGTTAT-AAAAAATAT-T-T-CCGGCATA-TAAGTGGAGGGGTTCTGAA-TTCAGTAGA-TGGA-ACCA---TGTCTTGGACAAA------TCACTATTGTATG-GGT-CACCAT-AGGGTGCTT-TTAAAGTGCAAGCCAT---TCAGTTCT---TTAT-CATATA-GACTATA-T-C-CA-GCCTC--TTCAGC--T-CATTTGAAAAGATT-TTT-CAGCA-TTGCTGGAATAAT-CTTTCTT-CCTGACA-GATGCAGGAC-TGA-A--TGATG-AAACTTTC--CAAAAGCTCCTGATGATTA---AATGTAATT-ATATAT-GGAC-T------GCAGG--AGA-TTTGATA-TTTCACAAATGGAGATGATATTTGTTTTGTTCA-ATAATT-AAATGTA-ACATCA-A--CAT-T-TCATTTTTCGTC
gi|4 : tggaAAT-ATAGTTCCTCTTCCAAAGACTGGGTTTTTGACATTAAGTGAGGAT-CAGT-G-TTGTGCTTT--ACT--CTTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT------AACACA----TTA-T--TATACAC--ATTCAC-TTGGAGTGTTACA--ATA-----TTGAAAGTTCT-ATATATA-AACCATAT-TTCCAGCA-A-TAA-GTGAGGAGTTCTGAT--TCAGT--AATAAAGACCA---TG-CTT-GGAAAAACCAA--CATTA---TATTTGGT-CACCATGTGGATGCTTCTTAAAGTGCAAG-CAT-TGC-AGTT-TCTTTTATGCATATA-GACTATA-TCCGCA-GCCTC--TTCAGC--TCCATTTTGAAAGATT-TT--CAGCATTGGCTGGAAGAATGCTCTCTT-CCTGACA-GATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATTATGTAT----ATTC-TA-ATGTGACTTGTGCAGGCA-G--AG---TTTATA--TTCACAAA-CGAGATGGTATTTGT-TTGCTCAAAATATT-AAATCTA-AC-TCA----CATATTTCATTTTCGGTCAAAGTAAATCGATTATTAAT
gi|7 : tggaAACTATAGTTCCTGTTGC-AAGGCTG----TTT-AAATTTAAAGA--AT-CAGTTG-TTG-G---TT-ACT--GTTCAT-----------A-AAA-TT-GATA---ATACATGT--ACCTAAGGATATAT-----ACATGTATTAATATC--ACA----TTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTG-TTAT--AAAAC-ATAT-T-TCAGCATAATAAGCGGAG-AGTTCTGAA-TTCA-T--A-TGAA-ACCA---TGTCTT----GGAA--AAATCACTA---TATTTGGT-CAC-AC-TGGGTGCTT-T-AAAGTGCAAG-CAT-TGCACGTTCT---TTATACATATA-GACTATA-TCC-CAC---TC--TTCAGC--TCCATTTG-AAAGATT-TTCTCAGCA-TTGCTGGAAGAAT-CTCTCT---CTGAC-TGATGCA-GACGTGATGATCG----AAACTTTT--CAAAACTC-CTGATGATTA---ATGT-AATTC-TA-TG-CGACTT------GCAGG--AG---TTTATA-TTTCACAAA-CGAG-TGATATTGT--TTGTTCA-AAAATT-AAATCTA-ACATCACACACAT-T-TCATTTTC-GTCgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|6 : tggAAT-ATAGTTCCTGTT-CCAAGACTG----TT--AATT--AATGA--AT-CAGT-GGTTG-G---TTTACTGCTTTCAT-----------A-AAA-TT-TA-AT--ATAAA-----GCCTAAGGA---AT--ACCA-------TG-TAGTTTAC-C--ATTCAC-TTGA-GTGT-A---AATAATT---TGAAG-TTCG-ATAT--ATAAC-ATATAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTC-T-TA-GAAA--AAT--ACTAG--TATG-GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAGCAT-TGC-AGTTCT---TTATGCTAAATAGACTATAGGCC-CA-GCCCTGTTTCAGCNNNNNNNNNNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNN---NTCT-AATT---------GACTT------GCA-GGAAGA-TTTTATA--TTCACAAAACGAG-ATGTATTTGT-TTGTT--CAAAATT-AAATCTA-ACATCA-A--CAT-T-TCATTTT
gi|9 : ggaAAT-ATAGTTCCTGTTGC-AAGGCTG----TTTGAATT--AGTGA--ATTCAAT-G-TTG-G---TT-ACT--GTT-AT-----------A-CAA-TT-AA-T---ATA-------GCCTAAGGATATAT-----ACATGTATTA-T----TACACAGGTTTAC-TTG-AGTGT-ACAtcg
gi|16 : tggaAAT-ATAGTTCCTGTTG-CAAGGCTG----TTTAAATT--AA
gi|12 : ntggaATAGTTCCTGTTGC-AAGGCTG----TTTGAATT--AGTGA--AT-CAAT-G-TTG-GT--T--ACT--GTTCAA-C---------A-CAATTT-TA-AAATATA-------GTCTAAGGAT-acaat
gi|14 : ggaaaaTTGC-AAGGCTG----TT-GAAGT-------------------TTG-G---TT-ACT--GTTCATTC---------A-CAA-TT-TA-A---TTA-------GCCTAAGGAT-at
gi|5 : GAAAGATTATTC-CAGCA-ATGCTGAAA-AAT-CTTTata
gi|7 : tggaaatatagttcctgttgcaaggctgtttgaattagtgaatcaatgttggttactgttcatcacaatttaatatagcctaaggatatatacatgtattatacacatgctcacttgtgtatacaaataattgaattctgttataaaaaatatttccggcatataagtggaggggttctgaattcagtagatggaaccatgtcttggacaaatcactattgtatgggtcaccatagggtgcttttaaagtgcaagccattcagttctttatcatatagactatatccagcctcttcagctcatttgaGAGAGATTCTTC-CAGCA-ATGCTGAGAAAAT-CTTTCttcctgacagatgcaggactgaatgatgaaactttccaaaagctcctgatgattaaatgtaattatatatggactgcaggagatttgatatttcacaaatggagatgatatttgttttgttcaataattaaatgtaacatcaacatttcatttttcgtc
gi|11 : tggaactatagttcctgttgcaaggctgtttaaatttaaagaatcagttgttggttactgttcataaaattgataatacatgtacctaaggatatatacatgtattaatatcacattcacttgatgtataaataattgaatttgttataaaacatatttcagcataataagcggagagttctgaattcatatgaaaccatgtcttggaaaaatcactatatttggtcacactgggtgctttaaagtgcaagcattgcacgttctttatacatatagactatatcccactcttcagctccattt--AGATTTG-ATATTT-CACAAACGGGA-TGATATTTGT-TTGTTCAC-TAATT-AAATCTA-ACATCA-A--CAT-T-TCATTTTC-GTCAAAGTA-ATCGATTA-Ttctgactgatgcagacgtgatgatcgaaacttttcaaaactcctgatgattaatgtaattctatgcgacttgcaggagtttatatttcacaaacgagtgatattgtttgttcaaaaattaaatctaacatcacacacatttcattttcgtc
gi|4 : tTAATCATGTTAA-CTTCGCCTT-ATTGTATTA-TTGTTA-TTAATCGATTACGA-TTTTGAGTAATCG-TG-CACATCCCT--taa
gi|8 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatTAATCATGTTAAACTTCGCGCTTATTGTATTATTTGTTATTAAATCGATTAAGATTTTGAGATAATCG-TGCCAC
gi|3 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatTTAATCGATTACAA-TTTTGAGTAATCGT-GC-ACATCCCTTGAAAC-ATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGTT-TTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACTATAGTAACTATCTGATAGATAAAAC-GTC-GCCAATA-CAATATATTATG---AAA--CTCGGA-----------ATTAAG------------GAATTCATCATT--ACACGA--TGGACT-TGTTTTCG-TTTTGTAGGTAGG-TTTCACCATTGATTTAGATATTC-ATGTATCACTCTGTCTGCCTGGTCTGT-CTGTTCTGCGCAC-TAA-CATATA-ATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCA----GTTTGGTTT--AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAA--A---TAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTGCGGCTA-ATTCA----TTTACTATT---TGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAATT-AGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATGAA--TACTA--GAATC-AAAGCA--TTAACT--TCCTT--TAAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGAC-ACACAAAAGACGAAGAGTTTTCAAAAAGCG---TTTCAAG-CAATA-C-T-AGA-AAGAGGGATCAGTGGGATGTGT-GCC--CTAT---ATCACCAGTTAATCA--TTGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGAC-TTCAAGG---GAGAA-GTCA-----GGA---AGAAATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAAA--AAT-----CCGGA-TTTATTGTAACGAA--AGGCCAA--CTCGAGTAAT--TATTTT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACAAGATA---T--A----TCTAT-ATATCTATCT--ATGTT---CAGAAAACAGAATGAAG--AGGGGAA-AAGCCAA-T-TTGGG-A--GTGTCTC--CGAGAAA-AACG-TTCTAAAGGGTAAT-TACAAATTTAACCACC------ATGA-C--A--CT--TATTGT--AT--GGTA--TACTCTGT-TACTctggaaacataagc
gi|2 : TAAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCG-G--TATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT--------------ATA-GTANNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA---------------TTCATCATCTA-CAC--ATGGGGACTTGTTTTCGTTTT-GTAGGTAGGTTT-CAC-ATTGATTTAGATAT-CTATGTATCACTCTGTCTGCCTG-TCTGT-CT-GTCTGCGCAT---AATATATATAT-TT-GTATTCTACCA-CAAAATGACTTTACAATC--CAA-TCATGTGGTAGATTTGTTGCA-AACTGGTCAATGCACATATAAGATATAG--TGC--AAATAAA-GAC---GCCTTGCAAC-ACCAG-----TTTGGTTTAAGTGCCCTGGA-GTA-CTAAATGAGTG-TGACAAA--GCAACAAATA--ATGAG---TAGTCCTCT-AAGGAA-ACTGATCC----CTGTATGCACGCG------TTGTAGATAAACT--ATATATTG-ATA-AT--TGA-GTG-CGCTAAT--CA----TTTACTATTCTTGTTTCTAACGTT-CAC-TTCTTT--C-ACA-AACTTGTGGTTT-TTTGTC--GAGA-GCCT-CCTG-AAAAGAGT-AATCTAGCAG-GACTTCTGGAGAA--CAAACAAATCAACATACAACTTCGGTAGAACGATGAAA-TACTA--GAATC-AAAGCA--TTAACT--TCCTT--TAAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAA-GACTACACCAAAGACGAAGAGTTTC--AAAAGCGTTTCATC-AGCCAGTACCGTAAGA--AGAGGGATCAT--GGATGT-TGCCCGTCAATATCAGC---AGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTC-AAGGTAGAGAAGGTCATGGAGAAATTGAGTAATAGATCGAAGT--AATCAACCAGAGGCTTAGACTA-CCACACAG-AAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAATGTTATT--TTCCTA----AGTTTTTACTCCCGAAAGAATAATT-ACGTTTGAGAG-AGCGGGTAGATTA-TCTATCCTA-TTATCT--ATCTTGTCAGG-AAGCTGAATGAATGTAAGGGAA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACGTGCT-AGAGGGTAAT-TAC-TCTTCAA-CA-----GCGGTGAGCGAATTTTAAGATTCTGAGTTGA-TAAGTG-GGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|10 : gaaacaAAATGAGTG-TGACAAA--GCAACAA--ATAATGAT---TAGTCCTCTAA-GGAA-ACTGATCCA----TGTATGCACGCGT------TGTAGATAAAAT--ATATATTG-ATA-AT--TGA-GTG-CGCTAtact
gi|15 : -TA--ACAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGAC-AGA-G--TGGAAatca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AGGGGTAAAAGCAAATTTGGCAGTGTCTCCGAAAGTGTTCTTAGCAGGTATTTACAATATTTTA
Unaligned ( gi|17 ): TAACATCAACATTTCATTTTCGTCAAAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 2222 111 22 2222222 22 11 111 11 111 22 11 111 1 111 1 1 111 11111 11 11 22 11111 111 11 11 1 1 1 111 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 2 1 1 1 1 2 333 1 2 333333 11 33333 222 333333 1111 22222 33 33 2 3333 2 1 1 22 22 2 1 2 33 2 33 11 2 444 2 55555 2 2 1 11 44 1 1 22222 222222 11 1 1 1111 1 1 555555555 11111 2 2 33 1 11 2 2 1 1 1 2 1 1 11 1 11 11 11 11 11 2 33 22222222 222222 333 333333333 4444 2 33 555555 22 2 3333333333 2 66666666666 333 1 6666666666 333 1 1 22 11111111 2 222222 1 55555555 1 22 1 11 2 11 1 1 3333333 222 11 33333 222 1 22222222 2222 111 11 1 5555 1 222222 4444 2222 2 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 99 4444 111 6 11 6 1 6 0 4444444 33 1 8 99 55 8 8 8 6 8 2 333 11 8 8 444 0 55 11 444 6 777 8 8 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 55 7 00 888 2 8 2 00 00 8 8 00000 2 2 222 55 8 2 2 8 2 1 8 8 8 22 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 4 3 9 0 0 55 2 5 0 3 6 1 111 3 3 888888 55 88 2 3 2 33333 2 2 333 66 3 2 666666 7 4444 33333 1 7 99 99 3 3333 3 3 4 55 77 3 3 3 66 3 6 7 7 77 88 3 111 1 3 33333 1 1 7 3 3 3 0 33 11 3 0 0 11111 2 888888 3 33 0 0 4444 0 0 000000000 11111 3 3 00 7 3 6 7 88 3 3 3 6 2 3 7 2 77 7 3 88 3 88 88 88 1 7 44 7 7 1 33 3 1 7 00 66666666 0 888888 666 6 1 777777777 77 11 9999 1 3 0 00 44 777777 11 22 0 44 3 8888888888 3 00000000000 1 7 1 111 1 22 0 3 7 6666666666 0 88 6 0 1 111 2 3 22 77 7 11111111 7 1 3 666666 1 2 66666666 3 00 2 88 1 3 0 7 7 1 33 0 0 1 4444444 111 3 33 88888 7 222 0 555 44444444 3333 6 999 1 88 5 4 1111 1 5 333333 6 6 44 3333 6666 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . .. .... ... . .. . . . . ....... .. . . .. .. . . . . . . ... .. . . ... . .. .. ... . ... . . . . . . . . . ... . . . . . ..... .. . .. ... . . . .. .. . . ..... . . ... .. . . . . . . . . . .. . .. . . . . . . . . . . . ... . . . . . . ................................................................................................................ . . . . . . .. . . . . . . ... . . ...... .. .. . . . ..... . . ... .. . . ...... . .... ..... . . .. .. . .... . . . .. .. . . . .. . . . . .. .. . ... . . ..... . . . . . . . .. .. . . . ..... . ...... . .. . . .... . . ......... ..... . . .. . . . . .. . . . . . . . . .. . . .. . .. .. .. . . .. . . . .. . . . .. ........ . ...... ... . . ......... .. .. .... . . . .. .. ...... .. .. . .. . .......... . ........... . . . ... . .. . . . .......... . .. . . . ... . . .. .. . ........ . . . ...... . . ........ . .. . .. . . . . . . .. . . . ....... ... . .. ..... . ... . ... ........ .... . ... . .. . . .... . . ...... . . .. .... .... . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 88 7777 333 7 55 7 0 7 8 4444444 00 0 0 00 00 0 0 0 8 0 8 000 00 0 0 000 8 44 00 000 0 666 0 0 0 6 0 0 0 0 0 222 2 0 0 0 0 22222 88 2 22 222 2 0 0 88 22 0 0 00000 8 6 666 00 8 2 2 0 8 0 0 0 0 66 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 7 8 0 0 00 5 3 0 7 7 0 333 3 7 333333 00 33 3 0 3 33333 0 3 333 00 0 0 000000 3 3333 33333 0 3 00 00 3 3333 3 3 0 33 33 7 3 3 77 7 7 3 3 00 33 3 777 0 3 77777 0 0 3 7 3 2 0 88 22 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 777777777 77777 7 7 77 3 3 7 3 33 7 7 3 0 0 3 3 0 33 3 3 33 3 33 33 33 0 3 77 3 3 0 33 7 0 3 33 33333333 7 777777 000 7 0 777777777 77 77 3333 0 3 7 00 33 333333 33 00 7 77 3 3333333333 3 77777777777 0 3 0 333 0 00 7 3 3 3333333333 7 33 7 7 0 000 0 3 00 33 3 77777777 3 0 3 777777 0 0 00000000 3 77 0 33 0 3 7 3 3 0 00 0 0 0 5555555 000 2 88 55555 0 555 0 222 00000000 0000 0 555 0 00 0 0 5555 0 0 555555 7 7 33 7777 7777 3 7 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACA-GATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTTATTGTATTATT-GTTATTTAATCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAAC-ATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TTATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTAACACGAAT-GGGACTTGTTTTCGTTTT-GTAGGTAGGTTT-CAC-ATTGATTTAGATAT-CCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-TCTGCGCAC-TAA-CATATA-ATATTTG-TATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAAC-ACCAG-----TTTGGTTTAAGTGCCCTGGA-GTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-CG-CTAA--TCA----TTTACTATTCCTTTTTCTAACGTT-CGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAGA-GCCT-CCTG-AAAAGAGT-AATCTAGCAG-GACTTCTGGAGAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGAC-ACACCAAAGACGAAGAGTTTC--AAAAGCGTTTC-TCAAGCCAATACC-TAAG-AAGAGGGATCA---GGATGTGTGCCC--CAATAT-AGCACCAGTAAATCAT-TC-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCTG-TACCGACTTCCAAGGG---AGAAG-TCA-----AGACC-AGAAATAGATCGAAA--TAATCAACCAGAGGCTTAGACTACC-ACACAGAAAA--GAT-----CCGGATTTTATTGTAACCGA--AGGCCAGAC-TANAGTAAT-CTATTTTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGAGGAN----T--ATTAT-CTATC-TATCTATCT--ATCTT-TCCGGAAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCAAC-CACCGACGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTG-GNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGNTAT-A-AAACCATA-T-T-CCAGCATA-TAAGCGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGGTGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAAGAAT-CTTTCTT-CCTGACATGATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAANCTCCTGATGATT-AATNTA-ATTC-TA-AT-CGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCATGTTAAACTTCGCNCTTATTGTATTATTTGTTATTTAATCGATTACGATTTTGAG-TAATCGT-GCCACATCCCTTGAAAC-ATATAAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCNGTN-TTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGGTAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATCTAACACGAATNGGGNCTTGTTTTCGTTTTTGTAGGTAGGTTTTCACCATTGATTTAGATATTCTATGTATCACTCTGTCTGCCTGGTCTGT-CTGNTCTGCGCAC-TAAACATATATATATTTG-TATTCTACCACCAAAATGACTTTACAATCC-CAATTCATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGTT-GC--AAATAAAGGACGG--CCTTGNAACCACCAG---GTTTNGNTTTAAGTGCCCTGGAAGTACCTAAATGAGTG-TGACAAA--GCAACAAA--ATGATTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-CG-CTAANTTCA----TTTACTATTCTTNNTTCTAACGTTTCACTTTCTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAATCTAGCAGCGACTTCTGGAGAGAACAAACAAATCAACATACAACTCGGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTANGTACTTTATTGATAAAATATCTGGTTGGTATTCNTAGTTGAAGGACTACACNAAAGACGAAGAGTTTCCAAAAAGCGTTTCNTCAAGCCAGTACCGTAAGAAAGAGGGATCANTGGGATGTGTGNCCGTCNATATCANCACCAGCNAATCATGTCGTNGGGAGGCAGAGCCGGGGGTGGAGGGGTGGAGGANNAGCNTCTTCTGGTACCGACTTTCAAGGGTAGAGAAGGTCATGGAGGGATTGAGNAATAGATCGNAGTATAANCAACCAGAGGNNTAGACTGCC-ACACAGAAAACGGATTGTCGCCGGATTTTNTTGTGACNAGCTAGGCCAGAC-TNNAGTAATGTTATTTTTTCCTACTCCAGTTTTTACNCCCGAAAGAATAANNTACGTTTGANAGGANNGGGTAGATTAT-CTATCNTATCTATCT--ATNTTGTCCGGAAAGCNGAATGAANGTAGGGG-AA-ANGCCAAGTGTTGGGAAGTGTGTCTC--CGAGAANAAACGTNCCTAGAGGGTAAT-TACANNTTCAAC-CACCG-CGGTGAGCGAATTCTAANATTNTGAGTTGGGTAAGTGCNNTNCGTACTAGTGATNCAAAGACATATGGTGGTGATTGCCGACTTGTTTTGTTGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCTTTATTA-CAACCATA-T-T-CCAGCACA-TAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-T-GGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGCCTTTATTGTATTATT-GTTAATTAATCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT--AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATTACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTAACACAAATTGGGACT-GTTTTCGTTT--GTAGGGAGGTT--CAC-ATTGATTTAGATA--ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGTCTGCGTATGTAAATATATA---ATTTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAAC-ACCAAAGCGTTTTGTTTTAAGTGCCCTTGA-GTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTCG-CTAGA--CAGGGGTTTACTATTCCTTTTTCTAACGTT-CGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAGA-GTCT-CTTGCAAAAGAGTAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-AC-ACACCAAAGACGA-GAGTTTC--AAAAGCGCTTTTTCAG--CAATACC-TAGATGAGAGGATTCA---GGATGTGTGGCC--CAATA--AGCACTAATAAATCAT-T--TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCTG-TACCGACTTC--AGGA---AGAAG-TCA-----AGACCCAGAAATAG-TCGAAA---AATCAACCAGAGGCTTAGACTACCCACACAGAAAA---AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAAT-CTATTTCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC---TGTGAGAAA----TCTATTATTCTATC-TATTTATCTGCATCTT-TCCAGAA-GCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAATAA-CGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCTA--TTGAGTATAT---CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-CG-CTAAc
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAAtca
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAatatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : GAAAC-ATA--AGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG---TATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTA-CAC--ATGGGGACTTGTTTTCGTTTT-GTAGGTAGGTTT-CAC-ATTGATTTAGATAT-CTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-TCTGCGCA--TAA---TATATATATTTG-TATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAAC-ACCAG-----TTTGGTTTAAGTGCCCTGGA-GTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-CG-CTAA--TCA----TTTACTATTCTTGTTTCTAACGTT-CACTT-CTTT--CA-CA-AACTTGTGGTTTTTT-GTC--GAGA-GCCT-CCTG-AAAAGAGT-AATCTAGCAG-GACTTCTGGAGA--ACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAA-GACTACACCAAAGACGAAGAGTTTC--AAAAGCGTTTCATC-AGCCAGTACCGTAAG-AAGAGGGATCAT--GGATGT-TGCCCGTCAATATCAG---CAGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAA-GGTAGAGAAGGTCATGGAGAAATTGAGTAATAGATCGAAG--TAATCAACCAGAGGCTTAGACTACC-ACACAG-AAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGAC-TATAGTAATGTTA--TTTTCCTA----AGTTTTTACTCCCGAAAGAATAA-TTACGTTTGAGA-GAGCGGGTAGATTAT-CTATCCTAT-TATCT--ATCTTGTCAGG-AAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACGTG-CTAGAGGGTAAT-TAC-TCTTCAA--CA--G-CGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTG-GGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : TTAATCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAAC-ATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGTT-TTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT--ACACGA-T--GGACTTGTTTTCGTTTT-GTAGGTAGGTTT-CACCATTGATTTAGATATTC-ATGTATCACTCTGTCTGCCTGGTCTGT-CTGTTCTGCGCAC-TAA-CATATA-ATATTTG-TATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTTA-GTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAA-TTCA----TTTACTATT---TGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAAT-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATGAA-T-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGAC-ACACAAAAGACGAAGAGTTTTCAAAAAGCGTTTC---AAGC-AATACT---AGAAAGAGGGATCAGTGGGATGTGTGCCC-----TAT-ATCACCAGTTAATCAT--TGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCTG-TACCGACTT-CAAGGG---AGAAG-TCA-----GGA---AGAAATAGATCGTAATATAAACAACTAGAGGGATAGACTGCT-ACACAGAAAA--AAT-----CCGGATTT-ATTGTAACGAA--AGGCCA-AC-TCGAGTAAT--TATTTT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACAAGATA--------TAT-CTAT-ATATCTATCT--ATGTT---CAGAAAACAGAATGAAG--AGGGG-AA-AAGCCAA-T-TTGGGA---GTGTCTC--CGAGAA-AAACGTTC-TAAAGGGTAAT-TACAAATTTAAC-CACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TATTA-TA-----CAC--ATTCAC-TTGGAGTGTTACA-A-TA-----TTGAAAGTTCTATAT-ATAAACCATA-T-TTCCAGCA-A-TAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTTG-GAAAAA--CCAACATTA-TATTT-GGT-CACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACA-GATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTTATTGTATTATT-GTTATT-AATCGATTACGATTTTGAG-TAATCGT-G-CACATCCCTgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTATTA-TA---CACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA-TTCTGTTAT-A-AAA-AATATT-T-CCGGCATA-TAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTTG-GACAAA--TCA---CTATTGTATGGGT-CACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACA-GATGCAGGAC-TGA-A--TGATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGT----T--TAC-C--ATTCAC-TTGA-GTGT-A---AATAATT--T-GAA-GTTCGATAT-A-TAA-CATA-TAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT-AGAAAAA--T-A---CTAGTATG--GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAGC----NNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTATTAATAT----CAC--ATTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTGTTAT-A-AAAC-ATA-T-T-TCAGCATAATAAGCGGAG-AGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTT-GGT-CAC-AC-TGGGTGCTT-T-AAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGAC-TGATGCA-GACGTGATGATCG----AAACTTTT--CAAAA-CTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTTATTGTATTATTTGTTATTAAATCGATTAAGATTTTGAGATAATCGT-GCCA----CCTGGAAAC-ATA
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTAT---TAT--TACACAGGTTTAC-TTG-AGTGT-ACA-agc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 2222 111 22 2222222 22 11 111 11 111 22 11 111 1 111 1 1 111 11111 11 11 11111 111 11 1 1 1 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 1 1 1 1 1 1 1 333333 1 1 333333 11 33333 222 333333 111 3333 1 11 1 1 111 22 11 1 11 1 11 11 1 222 1 33333 1 1 1 11 1 1 22222 222222 11 1 1 1111 1 1 1 2222 1 1 2222 11 11 1 1 1 1 111 1 22 1 11 1 11 11 11 11 1 11 222222 11 1 1 11 333 2222222222 111 1 11 333333 1 1 11 11 1 555555555555 1 111 1 3333333333 11 111 1 11111111 1 1 4444444444 1 1 1 11 11 1 1 1 1 222 1 222 11 333333 1111 1 2222 2222 111 11 1 111 1 22222 2222 1 1 1 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 99 4444 111 6 11 6 1 6 0 4444444 33 1 8 99 55 8 8 8 6 8 333 11 8 8 444 0 55 11 444 6 777 8 8 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 5 7 00 888 1 8 00 8 8 8 00000 2 2 222 7 2 2 8 2 8 8 8 8 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 3 3 6 0 0 55 2 8 0 7 6 111111 3 3 888888 22 88 1 1 1 33333 1 1 333 22 1 2 666666 7 999 5555 6 7 7 7 3 11 3 3 777 55 44 7 7 3 88 3 6 7 7 88 88 3 333 3 33333 7 3 3 3 0 33 3 1 0 0 11111 2 888888 3 33 0 0 4444 0 0 0 1111 999 3 0 3 0000 44 6 7 88 3 3 3 3 666 3 22 7 3 88 3 88 88 88 7 44 7 7 2 7 88 666666 33 6 3 2 88 666 6 6666666666 999 3 88 1 888888 3 3 88 88 3 555555555555 7 3 666 3 6666666666 0 7 6 0 88 666 1 5 7 11111111 7 3 7 88 3 7777777777 7 3 3 2 88 99 6 2 2 0 0 666 0 111 3 33 666666 5555 0 3 5555 3333 999 88 5 1 888 5 22222 6 6 1 8888 3 3 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . .. .... ... . .. . . . . ....... .. . . .. .. . . . . . ... .. . . ... . .. .. ... . ... . . . . . . . . . ... . . . . . ..... . . .. ... . . .. . . . ..... . . ... . . . . . . . . . . .. . . . . . . . . . . . ... . . . . . . ........................................................................................................... . . . . . . . .. . . . . . ...... . . ...... .. .. . . . ..... . . ... .. . . ...... . ... .... . . . . . .. . . ... .. .. . . . .. . . . . .. .. . ... . ..... . . . . . .. . . . . ..... . ...... . .. . . .... . . . .... ... . . . .... .. . . .. . . . . ... . .. . . .. . .. .. .. . .. . . . . .. ...... .. . . . .. ... . .......... ... . .. . ...... . . .. .. . ............ . . ... . .......... . . . . .. ... . . . ........ . . . .. . .......... . . . . .. .. . . . . . ... . ... . .. ...... .... . . .... .... ... .. . . ... . ..... . . . .... . . . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 88 7777 333 7 55 7 0 7 8 4444444 00 4 0 00 00 0 0 0 4 0 000 00 0 0 000 8 44 00 000 0 666 0 0 0 6 0 0 0 0 0 222 2 0 0 0 0 22222 0 2 22 222 0 0 88 0 0 0 00000 8 6 666 2 2 2 0 8 0 0 0 0 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 3 0 0 0 00 5 0 0 3 7 000000 3 3 333333 00 33 0 0 0 33333 0 0 333 00 0 0 000000 3 777 0000 7 3 3 3 3 00 3 3 777 33 00 3 3 3 33 3 7 3 3 33 33 3 333 3 33333 3 3 3 2 0 88 2 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 0 2222 333 3 7 3 3333 00 7 3 33 3 3 3 3 333 3 00 3 3 33 3 33 33 33 3 77 3 3 0 3 33 000000 33 7 3 3 33 777 7 3333333333 333 3 33 0 333333 3 3 77 33 3 777777777777 3 3 777 3 7777777777 7 3 7 7 33 333 0 0 3 33333333 3 3 3 33 3 3333333333 3 3 3 0 33 00 0 3 0 0 0 888 0 000 2 88 888888 5555 0 2 3333 0000 555 00 0 0 555 0 55555 7 7 0 3333 3 3 3 3 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAATCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA-T-GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCGTTTC-TC-AGCCAATACC-TAGGA--AGAGGGATCA---GGATGTGTGCCC--CAATATA-CACCAGTAAATCAT-T-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---C--AGAAATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATTTTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGAA---GN-T--ATTA-TCTAT-CTATCTATCT--ATCTT-CCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCAAC-C-CCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTATTTAATCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGAAT-GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGGAGAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCGTTTC-TCAAGCCAATACC-TAAGA--AGAGGGATCA---GGATGTGTGCCC--CAATATAGCACCAGTAAATCAT-TCTTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---CC-AGAAATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAATCTATTTTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGAG---GANT--ATTA-TCTAT-CTATCTATCT--ATCTTTCCGGAAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCAAC-CACCGACGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCTTTATTA-CAACCATA-T-T-CCAGCACA-TAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-T-GGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGC-CTTTATTGTATTATT-GTTAATTAATCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT-AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATT-ACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTA-ACACAAATTGGGACT-GTTTTCGTTT-GTAGGGAGGTT-CAC-ATTGATTTAGATA-ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGT-CTGCGTATGTAAATATATAAT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAA-CACCAAAGCGTTTTGTTTTAAGTGCCCTTG-AGTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTC-GCTAG-ACAGGGGTTTACTATTCCTTTTTCTAACG-TTCGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAG-AGTC-TCTTGCAAAAGAG-TAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-ACACACCAAAGACGA-GAGTTTC--AAAAGCGCTTT-TTCAGC-AATACC-TA-GATGAGAGGATTCA---GGATGTGTGGCC--CAATA-AGCACTAATAAATCAT-T-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTC--AGG--AAGAA-GTCA---AGA---CCCAGAAATAG-TCG-AA-A-AATCAACCAGAGGCTTAGACTACCCACACAGAAA-A-AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAATCTATTTCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGAA---ATCT--ATTATTCTAT-CTATTTATCTGCATCTTTCCAG-AAGCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAAT-AACGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTATAT--CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----c
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAA
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACAA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAtatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : -GAAACATA-A-GCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG--T--ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTACACATG----GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCA--TAA-TATATA-TATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCTTGTTTCTAACG-TTCACTT-CTTT--C-ACA-AACTTGTGG-TTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTG--GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAAGACTACACCAAAGACGAAGAGTTTC--AAAAGCGTTTCATC-AGCCAGTACCGTAAGA--AGAGGGATCAT--GGATGT-TGCCCGTCAATAT--CAGCAGCAAATCATGTCTTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAAGGTAGAGAAGGTCATGGAGAAATTG-AGTAATAGATCG-AA-GTAATCAACCAGAGGCTTAGACTA-CCACACAGAAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAATGT-TATTTTCCTA----AGTTTTTACTCCCGAAAGAAT-AATTACGTTTGAGAGAGCGGGTAGATTA-TCTATCCTAT-TATCT--ATCTTGTCAGGAAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACG-TGCTAGAGGGTAAT-TAC-TCTTCAA-----CAGCGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTGGGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : TTAATCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGT--TTTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT---ACACGA-T-GG-ACTTGTTTTCGTTTTGTAGGTAGGTTTCACCATTGATTTAGATATTCATGTATCACTCTGTCTGCCTGGTCTGT-CTG-TTCTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTT-AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAATTCA----TTTACTAT---TTGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAA-T-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATG-AAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGACACACAAAAGACGAAGAGTTTTCAAAAAGCGTT---TCAAG-CAATA-C-TAGAA--AGAGGGATCAGTGGGATGTGTGCCC-----TATATCACCAGTTAATCAT-TGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGACTT-CAAGG--GAGAA-GTCA---GGA------AGAAATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAA-AAAT-----CCGGA-TTTATTGTAACGAA--AGGCCA-A-CTCGAGTAAT-TATTTT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACAA---GA-T--A-TA-TCTAT-ATATCTATCT--ATGTT--CAGAAAACAGAATGAAG--AGGGG-AA-AAGCC-AAT-TTGGGA---GTGTCTC--CGAGAA-AAACGTT-CTAAAGGGTAAT-TACAAATTTAAC-CACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TATTA-TA-----CAC--ATTCAC-TTGGAGTGTTACA-A-TA-----TTGAAAGTTCTATAT-ATAAACCATA-T-TTCCAGCA-A-TAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTTG-GAAAAA--CCAACATTA-TATTT-GGT-CACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAATCGATTACGATTTTGAG-TAATCGT-G-CACATCCCT-gatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTATTA-TA---CACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA-TTCTGTTAT-A-AAA-AATATT-T-CCGGCATA-TAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTTG-GACAAA--TCA---CTATTGTATGGGT-CACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACAG-ATGCAGGAC-TGA-A--TGATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGT----T--TAC-C--ATTCAC-TTGA-GTGT-A---AATAATT--T-GAA-GTTCGATAT-A-TAA-CATA-TAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT-AGAAAAA--T-A---CTAGTATG--GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAG---CNNNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNN-NNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTATTAATAT----CAC--ATTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTGTTAT-A-AAAC-ATA-T-T-TCAGCATAATAAGCGGAG-AGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTT-GGT-CAC-AC-TGGGTGCTT-T-AAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGACTG-ATGCA-GACGTGATGATCG----AAACTTTTC---AAAACTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTT-ATTGTATTATTTGTTATTAAATCGATTAAGATTTTGAGATAATCGT-GCCA---CCTG-GAAACATA-A
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTAT---TAT--TACACAGGTTTAC-TTG-AGTGT-ACA-gc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 2222 111 22 2222222 22 11 111 11 111 22 11 111 1 111 1 1 111 11111 11 11 11111 111 11 1 1 1 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 1 1 1 1 1 1 1 1 333333 1 1 333333 11 33333 222 333333 111 222 1 1 1 111 22 1 1 11 1 11 11 1 222 1 33333 1 1 1 11 1 1 22222 222222 11 1 1 1111 1 1 1 2222 1 1 2222 11 11 1 1 1 1 111 1 1 1 11 1 11 11 11 11 1 11 1 222 1 1 11 333 2222 2 11111 1 11 333333 1 1 11 11 1 444444444444 11 1 111 1 3333333333 11 111 22 1 11111111 1 1 44444444444 1 1 1 11 33 1 1 1 222 1 222 11 333333 1111 1 11 2222 111 11 1 111 1 22222 2222 1 1 1 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 99 4444 111 6 11 6 1 6 0 4444444 33 1 8 99 55 8 8 8 6 8 333 11 8 8 444 0 55 11 444 6 777 8 8 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 5 7 00 888 1 8 00 8 8 8 00000 2 2 222 7 2 2 8 2 8 8 8 8 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 3 3 0 0 0 0 55 2 8 0 7 6 111111 3 3 888888 22 88 1 1 1 33333 1 1 333 22 1 2 666666 7 999 555 6 7 7 7 3 88 3 3 777 55 3 7 7 3 88 3 6 7 7 88 88 3 333 3 33333 7 3 3 3 0 33 3 1 0 0 11111 2 888888 3 33 0 0 4444 0 0 0 1111 999 3 0 3 0000 44 6 7 88 3 3 3 3 666 3 6 3 7 3 88 3 88 88 88 7 44 7 7 2 7 88 3 444 5 6 3 44 666 6 1111 8 88888 3 88 1 888888 3 3 88 88 3 333333333333 88 7 3 666 3 6666666666 0 7 6 0 88 666 1 00 3 11111111 7 3 7 88 3 33333333333 7 3 3 2 88 00 2 0 0 666 0 111 3 33 666666 5555 0 3 88 777 3333 999 88 5 1 888 5 22222 6 6 1 8888 3 3 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . .. .... ... . .. . . . . ....... .. . . .. .. . . . . . ... .. . . ... . .. .. ... . ... . . . . . . . . . ... . . . . . ..... . . .. ... . . .. . . . ..... . . ... . . . . . . . . . . .. . . . . . . . . . . . ... . . . . . . ........................................................................................................... . . . . . . . . .. . . . . . ...... . . ...... .. .. . . . ..... . . ... .. . . ...... . ... ... . . . . . .. . . ... .. . . . . .. . . . . .. .. . ... . ..... . . . . . .. . . . . ..... . ...... . .. . . .... . . . .... ... . . . .... .. . . .. . . . . ... . . . . . .. . .. .. .. . .. . . . . .. . ... . . . .. ... . .... . ..... . .. . ...... . . .. .. . ............ .. . . ... . .......... . . . . .. ... . .. . ........ . . . .. . ........... . . . . .. .. . . . ... . ... . .. ...... .... . . .. ... .... ... .. . . ... . ..... . . . .... . . . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 88 7777 333 7 55 7 0 7 8 4444444 00 4 0 00 00 0 0 0 4 0 000 00 0 0 000 8 44 00 000 0 666 0 0 0 6 0 0 0 0 0 222 2 0 0 0 0 22222 0 2 22 222 0 0 88 0 0 0 00000 8 6 666 2 2 2 0 8 0 0 0 0 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 3 0 0 0 0 00 5 0 0 3 7 000000 3 3 333333 00 33 0 0 0 33333 0 0 333 00 0 0 000000 3 777 777 7 3 3 3 3 33 3 3 777 33 3 3 3 3 33 3 7 3 3 33 33 3 333 3 33333 3 3 3 2 0 88 2 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 0 2222 333 3 7 3 3333 00 7 3 33 3 3 3 3 333 3 7 3 3 3 33 3 33 33 33 3 77 3 3 0 3 33 3 333 0 7 3 00 777 7 0000 7 77777 3 33 0 333333 3 3 77 33 3 000000000000 33 3 3 777 3 7777777777 7 3 7 7 33 333 0 77 3 33333333 3 3 3 33 3 33333333333 3 3 3 0 33 77 0 0 0 888 0 000 2 88 888888 5555 0 2 33 555 0000 555 00 0 0 555 0 55555 7 7 0 3333 3 3 3 3 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATAT-CACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A--GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAGCCAATACC-TAGG-AAGAGGGATCA---GGATGTGTGCCC--CAATATACACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA--CA--GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-CCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCTTTATTA-CAACCATA-T-T-CCAGCACA-TAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-T-GGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGC-CTTTATTGTATTATT-GTTAATTAA-TCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT-AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATT-ACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTA-ACACAAATTGGGACT-GTTTTCGTTT-GTAGGGAGGTT-CAC-ATTGATTTAGATA-ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGT-CTGCGTATGTAAATATATAAT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAA-CACCAAAGCGTTTTGTTTTAAGTGCCCTTG-AGTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTC-GCTAG-ACAGGGGTTTACTATTCCTTTTTCTAACG-TTCGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAG-AGTC-TCTTGCAAAAGAG-TAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-ACACACCAAAGACG-AGAGTTTC--AAAAGCGCTTTT-TCAG-CAATACC-TAGATGAGAGGATTCA---GGATGTGTGGCC--CAATAAGCACTAATAAATCA--TT-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTC--AGG--AAGAA-GTCA---AGACCCA--GA--AATAG-TCG-AA-A-AATCAACCAGAGGCTTAGACTACCCACACAGAAA-A-AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAATCTATT-TCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGA----AATCT--ATTATTCTAT-CTATTTATCTGCATCTT-TCCAGAAGCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAAT-AACGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTATAT--CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----c
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAA
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACAA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAtatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : -GAAACATA-A-GCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG--T--ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTACACATG----GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCA--TAA-TATATA-TATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCTTGTTTCTAACG-TTCACTT-CTTT--C-ACA-AACTTGTGG-TTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCT-G-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAAGACTACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTCATCAGCCAGTACCGTAAG-AAGAGGGATCAT--GGATGT-TGCCCGTCAATAT-CAGCAGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAAGGTAGAGAAGGTCATGGAGA--AATTGAGTAATAGATCG-AA-GTAATCAACCAGAGGCTTAGACTA-CCACACAGAAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAA--TGTTATTTTCCTA----AGTTTTTACTCCCGAAAGAAT-AATTACGTTTGAGAGAGCGG-GTAGATTA-TCTATCCTAT-TATCT--ATCTTGTCAGGAAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACG-TGCTAGAGGGTAAT-TAC-TCTTCA--A---CAGCGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTGGGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : -TTAA-TCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGT--TTTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT---ACACGA--TGG-ACTTGTTTTCGTTTTGTAGGTAGGTTTCACCATTGATTTAGATATTCATGTATCACTCTGTCTGCCTGGTCTGT-CTG-TTCTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTT-AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAATTCA----TTTACTAT---TTGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAA-T-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATG-AAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGACACACAAAAGACGAAGAGTTTTCAAAAAGCG-TT---TCAAGCAATA-C-TAGA-AAGAGGGATCAGTGGGATGTGTGCCC--T-ATAT-CACCAGTTAATCA--TTGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGACTT-CAAGG--GAGAA-GTCA---GGA---A--GA--AATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAA-AAAT-----CCGGA-TTTATTGTAACGAA--AGGCCA-A-CTCGAGTAAT-TATT-TT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACA----AG-AT--A-TA-TCTAT-ATATCTATCT--ATGTT--CAGAAAACAGAATGAAG--AGGGG-AA-AAGCC-AAT-TTGGGA---GTGTCTC--CGAGAA-AAACGTT-CTAAAGGGTAAT-TACAAATTTA--ACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TATTA-TA-----CAC--ATTCAC-TTGGAGTGTTACA-A-TA-----TTGAAAGTTCTATAT-ATAAACCATA-T-TTCCAGCA-A-TAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTTG-GAAAAA--CCAACATTA-TATTT-GGT-CACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATaccatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-G-CACATCCCT-gatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTATTA-TA---CACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA-TTCTGTTAT-A-AAA-AATATT-T-CCGGCATA-TAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTTG-GACAAA--TCA---CTATTGTATGGGT-CACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACAG-ATGCAGGAC-TGA-A--TGATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGT----T--TAC-C--ATTCAC-TTGA-GTGT-A---AATAATT--T-GAA-GTTCGATAT-A-TAA-CATA-TAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT-AGAAAAA--T-A---CTAGTATG--GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAG---CNNNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNN-NNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTATTAATAT----CAC--ATTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTGTTAT-A-AAAC-ATA-T-T-TCAGCATAATAAGCGGAG-AGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTT-GGT-CAC-AC-TGGGTGCTT-T-AAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGACTG-ATGCA-GACGTGATGATCG----AAACTTTTC---AAAACTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTT-ATTGTATTATTTGTTA-TTAAATCGATTAAGATTTTGAGATAATCGT-GCCA---CCTG-GAAACATA-A
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTAT---TAT--TACACAGGTTTAC-TTG-AGTGT-ACA-gc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 2222 111 22 2222222 22 11 111 11 111 22 11 111 1 111 1 1 111 11111 11 11 11111 111 11 1 1 1 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 1 1 1 1 1 1 1 1 333333 1 1 333333 11 33333 222 333333 111 222 1 1 1 111 22 1 1 11 1 11 11 1 222 1 33333 1 1 1 11 1 1 22222 222222 11 1 1 1111 1 1 1 2222 1 1 2222 11 11 1 1 1 1 111 1 1 1 11 1 11 11 11 11 1 11 1 22 1 1 1 333 2222 1 11111 1 11 333333 1 1 11 11 1 3333333333333 11 1 111 1 3333333333 11 111 22 1 11111111 1 1 44444444444 1 1 1 11 1 1 1 1 222 1 222 11 333333 1111 1 11 2222 111 11 1 111 1 22222 2222 1 1 1 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 99 4444 111 6 11 6 1 6 0 4444444 33 1 8 99 55 8 8 8 6 8 333 11 8 8 444 0 55 11 444 6 777 8 8 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 5 7 00 888 1 8 00 8 8 8 00000 2 2 222 7 2 2 8 2 8 8 8 8 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 3 3 0 0 0 0 55 2 8 0 7 6 111111 3 3 888888 22 88 1 1 1 33333 1 1 333 22 1 2 666666 7 999 555 6 7 7 7 3 88 3 3 777 55 3 7 7 3 88 3 6 7 7 88 88 3 333 3 33333 7 3 3 3 0 33 3 1 0 0 11111 2 888888 3 33 0 0 4444 0 0 0 1111 999 3 0 3 0000 44 6 7 88 3 3 3 3 666 3 6 3 7 3 88 3 88 88 88 7 44 7 7 2 7 88 3 00 3 6 3 3 666 6 1111 3 88888 3 88 1 888888 3 3 88 88 3 8888888888888 88 7 3 666 3 6666666666 0 7 6 0 88 666 1 00 3 11111111 7 3 7 88 3 33333333333 7 3 3 2 88 6 3 2 0 0 666 0 111 3 33 666666 5555 0 3 88 777 3333 999 88 5 1 888 5 22222 6 6 1 8888 3 3 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . .. .... ... . .. . . . . ....... .. . . .. .. . . . . . ... .. . . ... . .. .. ... . ... . . . . . . . . . ... . . . . . ..... . . .. ... . . .. . . . ..... . . ... . . . . . . . . . . .. . . . . . . . . . . . ... . . . . . . ........................................................................................................... . . . . . . . . .. . . . . . ...... . . ...... .. .. . . . ..... . . ... .. . . ...... . ... ... . . . . . .. . . ... .. . . . . .. . . . . .. .. . ... . ..... . . . . . .. . . . . ..... . ...... . .. . . .... . . . .... ... . . . .... .. . . .. . . . . ... . . . . . .. . .. .. .. . .. . . . . .. . .. . . . . ... . .... . ..... . .. . ...... . . .. .. . ............. .. . . ... . .......... . . . . .. ... . .. . ........ . . . .. . ........... . . . . .. . . . . . ... . ... . .. ...... .... . . .. ... .... ... .. . . ... . ..... . . . .... . . . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 88 7777 333 7 55 7 0 7 8 4444444 00 4 0 00 00 0 0 0 4 0 000 00 0 0 000 8 44 00 000 0 666 0 0 0 6 0 0 0 0 0 222 2 0 0 0 0 22222 0 2 22 222 0 0 88 0 0 0 00000 8 6 666 2 2 2 0 8 0 0 0 0 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 3 0 0 0 0 00 5 0 0 3 7 000000 3 3 333333 00 33 0 0 0 33333 0 0 333 00 0 0 000000 3 777 777 7 3 3 3 3 33 3 3 777 33 3 3 3 3 33 3 7 3 3 33 33 3 333 3 33333 3 3 3 2 0 88 2 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 0 2222 333 3 7 3 3333 00 7 3 33 3 3 3 3 333 3 7 3 3 3 33 3 33 33 33 3 77 3 3 0 3 33 3 77 3 7 3 3 777 7 0000 3 77777 3 33 0 333333 3 3 77 33 3 0000000000000 33 3 3 777 3 7777777777 7 3 7 7 33 333 0 77 3 33333333 3 3 3 33 3 33333333333 3 3 3 0 33 7 3 0 0 0 888 0 000 2 88 888888 5555 0 2 33 555 0000 555 00 0 0 555 0 55555 7 7 0 3333 3 3 3 3 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCTTTATTA-CAACCATA-T-T-CCAGCACA-TAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-T-GGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGC-CTTTATTGTATTATT-GTTAATTAA-TCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT-AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATT-ACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTA-ACACAAATTGGGACT-GTTTTCGTTT-GTAGGGAGGTT-CAC-ATTGATTTAGATA-ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGT-CTGCGTATGTAAATATATAAT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAA-CACCAAAGCGTTTTGTTTTAAGTGCCCTTG-AGTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTC-GCTAG-ACAGGGGTTTACTATTCCTTTTTCTAACG-TTCGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAG-AGTC-TCTTGCAAAAGAG-TAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-ACACACCAAAGACGA-GAGTTTC--AAAAGCGCTTTT-TCAG-CAATACC-TAGATGAGAGGATTCA---GGATGTGTGGCC--CAATAAGCACTAATAAATCA--TT-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTC--AGG--AAGAA-GTCA---AGACCCA---GA--AATAG-TCG-AA-A-AATCAACCAGAGGCTTAGACTACCCACACAGAAA-A-AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAATCTATT-TCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGA----AATCT--ATTATTCTAT-CTATTTATCTGCATCTT-TCCAGAAGCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAAT-AACGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTATAT--CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----c
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAA
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACAA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAtatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : -GAAACATA-A-GCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG--T--ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTACACATG----GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCA--TAA-TATATA-TATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCTTGTTTCTAACG-TTCACTT-CTTT--C-ACA-AACTTGTGG-TTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCT-G-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAAGACTACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTCATCAGCCAGTACCGTAAG-AAGAGGGATCAT--GGATGT-TGCCCGTCAATA-TCAGCAGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAAGGTAGAGAAGGTCATGGAGA---AATTGAGTAATAGATCG-AA-GTAATCAACCAGAGGCTTAGACTA-CCACACAGAAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAA--TGTTATTTTCCTA----AGTTTTTACTCCCGAAAGAAT-AATTACGTTTGAGAGAGCGG-GTAGATTA-TCTATCCTAT-TATCT--ATCTTGTCAGGAAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACG-TGCTAGAGGGTAAT-TAC-TCTTCA--A---CAGCGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTGGGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : -TTAA-TCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGT--TTTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT---ACACGA--TGG-ACTTGTTTTCGTTTTGTAGGTAGGTTTCACCATTGATTTAGATATTCATGTATCACTCTGTCTGCCTGGTCTGT-CTG-TTCTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTT-AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAATTCA----TTTACTAT---TTGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAA-T-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATG-AAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGACACACAAAAGACGAAGAGTTTTCAAAAAGCG-TTTC--AAG-CAATA-C-TAGA-AAGAGGGATCAGTGGGATGTGTGCCC--T-ATA-TCACCAGTTAATCA--TTGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGACTT-CAAGG--GAGAA-GTCA---GGA---A---GA--AATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAA-AAAT-----CCGGA-TTTATTGTAACGAA--AGGCCA-A-CTCGAGTAAT-TATT-TT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACA----AG-AT--A-TA-TCTAT-ATATCTATCT--AT-GT-TCAGAAAACAGAATGAAG--AGGGG-AA-AAGCC-AAT-TTGGGA---GTGTCTC--CGAGAA-AAACGTT-CTAAAGGGTAAT-TACAAATTTA--ACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TATTA-TA-----CAC--ATTCAC-TTGGAGTGTTACA-A-TA-----TTGAAAGTTCTATAT-ATAAACCATA-T-TTCCAGCA-A-TAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTTG-GAAAAA--CCAACATTA-TATTT-GGT-CACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATaccatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-G-CACATCCCT-gatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTATTA-TA---CACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA-TTCTGTTAT-A-AAA-AATATT-T-CCGGCATA-TAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTTG-GACAAA--TCA---CTATTGTATGGGT-CACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACAG-ATGCAGGAC-TGA-A--TGATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGT----T--TAC-C--ATTCAC-TTGA-GTGT-A---AATAATT--T-GAA-GTTCGATAT-A-TAA-CATA-TAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT-AGAAAAA--T-A---CTAGTATG--GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAG---CNNNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNN-NNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTATTAATAT----CAC--ATTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTGTTAT-A-AAAC-ATA-T-T-TCAGCATAATAAGCGGAG-AGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTT-GGT-CAC-AC-TGGGTGCTT-T-AAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGACTG-ATGCA-GACGTGATGATCG----AAACTTTTC---AAAACTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTT-ATTGTATTATTTGTTA-TTAAATCGATTAAGATTTTGAGATAATCGT-GCCA---CCTG-GAAACATA-A
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTAT---TAT--TACACAGGTTTAC-TTG-AGTGT-ACA-gc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 2222 111 22 2222222 22 11 111 11 111 22 11 111 1 111 1 1 111 11111 11 11 11111 111 11 1 1 1 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 1 1 1 1 1 1 1 1 333333 1 1 333333 11 33333 222 333333 111 222 1 1 1 111 22 1 1 11 1 11 11 1 222 1 33333 1 1 1 11 1 1 22222 222222 11 1 1 1111 1 1 1 2222 1 1 2222 11 11 1 1 1 1 111 1 1 1 11 1 11 11 11 11 1 11 1 22 1 1 1 333 2222 1 11111 1 11 333333 1 1 11 11 1 3333333333333 11 1 111 1 3333333333 11 111 22 1 11111111 1 1 44444444444 1 1 1 11 1 1 1 1 222 1 222 11 333333 1111 1 11 2222 111 11 1 111 1 22222 2222 1 1 1 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 99 4444 111 6 11 6 1 6 0 4444444 33 1 8 99 55 8 8 8 6 8 333 11 8 8 444 0 55 11 444 6 777 8 8 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 5 7 00 888 1 8 00 8 8 8 00000 2 2 222 7 2 2 8 2 8 8 8 8 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 3 3 0 0 0 0 55 2 8 0 7 6 111111 3 3 888888 22 88 1 1 1 33333 1 1 333 22 1 2 666666 7 999 555 6 7 7 7 3 88 3 3 777 55 3 7 7 3 88 3 6 7 7 88 88 3 333 3 33333 7 3 3 3 0 33 3 1 0 0 11111 2 888888 3 33 0 0 4444 0 0 0 1111 999 3 0 3 0000 44 6 7 88 3 3 3 3 666 3 6 3 7 3 88 3 88 88 88 7 44 7 7 2 7 88 3 00 3 6 3 3 666 6 1111 3 88888 3 88 1 888888 3 3 88 88 3 8888888888888 88 7 3 666 3 6666666666 0 7 6 0 88 666 1 00 3 11111111 7 3 7 88 3 33333333333 7 3 3 2 88 6 3 2 0 0 666 0 111 3 33 666666 5555 0 3 88 777 3333 999 88 5 1 888 5 22222 6 6 1 8888 3 3 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . .. .... ... . .. . . . . ....... .. . . .. .. . . . . . ... .. . . ... . .. .. ... . ... . . . . . . . . . ... . . . . . ..... . . .. ... . . .. . . . ..... . . ... . . . . . . . . . . .. . . . . . . . . . . . ... . . . . . . ........................................................................................................... . . . . . . . . .. . . . . . ...... . . ...... .. .. . . . ..... . . ... .. . . ...... . ... ... . . . . . .. . . ... .. . . . . .. . . . . .. .. . ... . ..... . . . . . .. . . . . ..... . ...... . .. . . .... . . . .... ... . . . .... .. . . .. . . . . ... . . . . . .. . .. .. .. . .. . . . . .. . .. . . . . ... . .... . ..... . .. . ...... . . .. .. . ............. .. . . ... . .......... . . . . .. ... . .. . ........ . . . .. . ........... . . . . .. . . . . . ... . ... . .. ...... .... . . .. ... .... ... .. . . ... . ..... . . . .... . . . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 88 7777 333 7 55 7 0 7 8 4444444 00 4 0 00 00 0 0 0 4 0 000 00 0 0 000 8 44 00 000 0 666 0 0 0 6 0 0 0 0 0 222 2 0 0 0 0 22222 0 2 22 222 0 0 88 0 0 0 00000 8 6 666 2 2 2 0 8 0 0 0 0 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 3 0 0 0 0 00 5 0 0 3 7 000000 3 3 333333 00 33 0 0 0 33333 0 0 333 00 0 0 000000 3 777 777 7 3 3 3 3 33 3 3 777 33 3 3 3 3 33 3 7 3 3 33 33 3 333 3 33333 3 3 3 2 0 88 2 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 0 2222 333 3 7 3 3333 00 7 3 33 3 3 3 3 333 3 7 3 3 3 33 3 33 33 33 3 77 3 3 0 3 33 3 77 3 7 3 3 777 7 0000 3 77777 3 33 0 333333 3 3 77 33 3 0000000000000 33 3 3 777 3 7777777777 7 3 7 7 33 333 0 77 3 33333333 3 3 3 33 3 33333333333 3 3 3 0 33 7 3 0 0 0 888 0 000 2 88 888888 5555 0 2 33 555 0000 555 00 0 0 555 0 55555 7 7 0 3333 3 3 3 3 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATCTTA-TACCCTACAC--CTTCACATTGAAGTGT-ACAGAATAATTATTTGAA--TTCTTTATTA-CAACCATA-T-T-CCAGCACA-TAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-T-GGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GAC-TGA-AATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGC-CTTTATTGTATTATT-GTTAATTAA-TCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT-AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATT-ACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTA-ACACAAATTGGGACT-GTTTTCGTTT-GTAGGGAGGTT-CAC-ATTGATTTAGATA-ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGT-CTGCGTATGTAAATATATAAT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAA-CACCAAAGCGTTTTGTTTTAAGTGCCCTTG-AGTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTC-GCTAG-ACAGGGGTTTACTATTCCTTTTTCTAACG-TTCGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAG-AGTC-TCTTGCAAAAGAG-TAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-ACACACCAAAGACGA-GAGTTTC--AAAAGCGCTTTT-TCAG-CAATACC-TAGATGAGAGGATTCA---GGATGTGTGGCC--CAATAAGCACTAATAAATCA--TT-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTC--AGG--AAGAA-GTCA---AGACCCA---GA--AATAG-TCG-AA-A-AATCAACCAGAGGCTTAGACTACCCACACAGAAA-A-AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAATCTATT-TCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGA----AATCT--ATTATTCTAT-CTATTTATCTGCATCTT-TCCAGAAGCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAAT-AACGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTATAT--CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----c
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAA
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACAA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAtatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : -GAAACATA-A-GCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG--T--ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTACACATG----GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCA--TAA-TATATA-TATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCTTGTTTCTAACG-TTCACTT-CTTT--C-ACA-AACTTGTGG-TTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCT-G-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAAGACTACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTCATCAGCCAGTACCGTAAG-AAGAGGGATCAT--GGATGT-TGCCCGTCAATA-TCAGCAGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAAGGTAGAGAAGGTCATGGAGA---AATTGAGTAATAGATCG-AA-GTAATCAACCAGAGGCTTAGACTA-CCACACAGAAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAA--TGTTATTTTCCTA----AGTTTTTACTCCCGAAAGAAT-AATTACGTTTGAGAGAGCGG-GTAGATTA-TCTATCCTAT-TATCT--ATCTTGTCAGGAAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACG-TGCTAGAGGGTAAT-TAC-TCTTCA--A---CAGCGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTGGGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : -TTAA-TCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGT--TTTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT---ACACGA--TGG-ACTTGTTTTCGTTTTGTAGGTAGGTTTCACCATTGATTTAGATATTCATGTATCACTCTGTCTGCCTGGTCTGT-CTG-TTCTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTT-AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAATTCA----TTTACTAT---TTGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAA-T-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATG-AAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGACACACAAAAGACGAAGAGTTTTCAAAAAGCG-TTTC--AAG-CAATA-C-TAGA-AAGAGGGATCAGTGGGATGTGTGCCC--T-ATA-TCACCAGTTAATCA--TTGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGACTT-CAAGG--GAGAA-GTCA---GGA---A---GA--AATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAA-AAAT-----CCGGA-TTTATTGTAACGAA--AGGCCA-A-CTCGAGTAAT-TATT-TT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACA----AG-AT--A-TA-TCTAT-ATATCTATCT--AT-GT-TCAGAAAACAGAATGAAG--AGGGG-AA-AAGCC-AAT-TTGGGA---GTGTCTC--CGAGAA-AAACGTT-CTAAAGGGTAAT-TACAAATTTA--ACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TATTA-TA-----CAC--ATTCAC-TTGGAGTGTTACA-A-TA-----TTGAAAGTTCTATAT-ATAAACCATA-T-TTCCAGCA-A-TAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTTG-GAAAAA--CCAACATTA-TATTT-GGT-CACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATaccatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-G-CACATCCCT-gatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTATTA-TA---CACAT--GCTCAC-TTG-TGTAT-ACA-AATAA----TTGAA-TTCTGTTAT-A-AAA-AATATT-T-CCGGCATA-TAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTTG-GACAAA--TCA---CTATTGTATGGGT-CACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACAG-ATGCAGGAC-TGA-A--TGATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGT----T--TAC-C--ATTCAC-TTGA-GTGT-A---AATAATT--T-GAA-GTTCGATAT-A-TAA-CATA-TAT-TCAGCACA-TAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT-AGAAAAA--T-A---CTAGTATG--GGT-CACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAG---CNNNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNN-NNNNN-NNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTATTAATAT----CAC--ATTCAC-TTGA--TGT-ATA-AATAATT----GAA--TTTGTTAT-A-AAAC-ATA-T-T-TCAGCATAATAAGCGGAG-AGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTT-GGT-CAC-AC-TGGGTGCTT-T-AAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGACTG-ATGCA-GACGTGATGATCG----AAACTTTTC---AAAACTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTT-ATTGTATTATTTGTTA-TTAAATCGATTAAGATTTTGAGATAATCGT-GCCA---CCTG-GAAACATA-A
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTAT---TAT--TACACAGGTTTAC-TTG-AGTGT-ACA-gc
blockSeqs : . . A GGTT T C T A GG T GG T CT T CT CTCGAGCGCTATG T G AAAT ATACGCT . AC G AA TT AGG . GA T C . ATTT AG A . TA CC T A T T A TTA AG A G . G . ACA T ATG . G C T A C . . C TCT G T G G . TGT C T TC GG G G T . G G TGATC A A NNN C C G A A T . T G TG C . . A G A A T C . . CAC . . T G A T A G . T . A A . CC C T . A C TTTT . A . NN . N N N . N N . NN N N N T TAC A G T T T C TC G . TT C . A A . . . C A T . . . . C . A A . T . . T T . . A G . A CT . . A . G T . TCT T . AACA A C T . A T . T TC C G . A . . . . . . T TT A A A A CA . AT C C G . GTG G GTCA . TGTC C CG G AGGGGT T G TC TA G TGGAGAAATT GT A T TAT . CGGATTGTCG T G CT GA T T A TTCCTA A G A TT G GAGCGGGTAG T . C C . C G G T . CA G AGT T . AGAAA TTCT . A . . GCGA AAG GA . A GGG G GTGAT G C A GGTG G G T T T GC
blockSeqs : . . . . T . . . . . TG . . . . TCAC . . AT CATGT . AC G A TT A . T . C . ATT T T . A A . . . C . AT . . . . G . . G TT . . . T . . . . . C G . . . . C C G C G T . T . . . NNNN A A ACT C C G . N . . . . . A . . . . A G . A . . C . . . . A T . . . . . . . . C C . . . . GT . . . CT . A T A . C A . AT T C T T . . . T T T . TT . . T . . . A . . . C . T . . . . . . . . . T . . T G . . C G . A . . . A . . . . . . . C A C . . . . . . T . . . . . . . . . . T T . A G A . . . . . . . T . T . TTG . . A . . . C . . GGAA . A . GT . AAAT . G . A G . . CT . . . AT . AGAT . . . . . . . . . . CA . . T . ATA TGC . A . . . G . . . T . C
blockSeqs : . . . . T . . . . . G . . . . CAC . . AT AA . AC G A C G . A . T . ATT G A . T C . . . T . AT . . . . A . . . TT . . . . . . . . . C A . . . . C . N N N N . N . . . AAT N N A N N N . A . . . . . . . . . . A A . C . . . . . . . . . . . . C . . . T . . T G . . C . . . . . . A . . . . . . CC . . . . AA TTC . .
blockSeqs : . . . . T . . . . . G . . . . CAC . . TA . . . G . T A . A . C . TT . T . A C . . . . . T . . . . G . . . G . . . . . . . . . C . . . . . C . . . G G . . . . . AT . . . . C G . . . . . . . . . . . . A A . . . . . . . . . .
blockSeqs : . . . . T . . . . . G . . . . AA . . A . . . . . . A . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . G . . . . AA . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . AC . . T . .
blockSeqs : . . . . . . .
blockSeqCons : CAC*********** AC* A* T*** A* ATT**** ** C* *** G* ** TG* C** C**** G** T* GAT**
originalCons : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT--TACAC--GTTCAC-TTGAAGTGT-ACA-AATAATT--TTGAA-GTTCGTTAT-A-AAACCATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTGAGAAAAA--TCA---CTA-TATNT-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGA-AATCGATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
finalCons : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCATCAC-----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTATTA-TAT---ACAC--GTTCAC-TTGA-GTGT-ACA-AATAATT----GAA--TTCGTTAT-A-AAAC-ATA-T-T-CCAGCACA-TAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTTG-GAAAAA--TCA---CTA-TATTG-GGT-CACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCTC----TTCAGCTCCATTTGGAAAGATTTTC-CAGCATTG--CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GAC-TGAGAT--GATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 11111 3333333 111 22222222 111 2222 11 1111 11 111 11 111 111 111 1 1 111 11111 11 11 111 11 1 1 1 111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 1 1 1 1 1 1 1 1 333333 1 1 333333 11 33333 222 333333 111 222 1 1 1 111 22 1 1 11 1 11 11 1 222 1 33333 1 1 1 11 1 1 22222 222222 11 1 1 1111 1 1 1 2222 1 1 2222 11 11 1 1 1 1 111 1 1 1 11 1 11 11 11 11 1 11 1 22 1 1 1 333 2222 1 11111 1 11 333333 1 1 11 11 1 3333333333333 11 1 111 1 3333333333 11 111 22 1 11111111 1 1 44444444444 1 1 1 11 1 1 1 1 222 1 222 11 333333 1111 1 11 2222 111 11 1 111 1 22222 2222 1 1 1 1
lowQualScore : 5 4 4 9999 1 4 4 4 66 5 666 5 66 5 66 99999999999999 5 5 99999 5555555 5 0 222 1 6 11111111 111 6 888 6 1 6 0 0 5555 99 8888 8 1 8 8 8 8 44 333 11 8 8 444 0 444 444 6 88 8 0 8 0 8 6 8 8 8 444 3 8 8 8 8 55555 7 00 888 1 8 00 8 8 2 8 8 0 222 7 2 2 8 2 8 8 8 8 0 11 3 6 6 6 3 7 4 6 0 6 5 555 5 5 5 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 3 3 0 0 0 0 55 2 8 0 7 6 111111 3 3 888888 22 88 1 1 1 33333 1 1 333 22 1 2 666666 7 999 555 6 7 7 7 3 88 3 3 777 55 3 7 7 3 88 3 6 7 7 88 88 3 333 3 33333 7 3 3 3 0 33 3 1 0 0 11111 2 888888 3 33 0 0 4444 0 0 0 1111 999 3 0 3 0000 44 6 7 88 3 3 3 3 666 3 6 3 7 3 88 3 88 88 88 7 44 7 7 2 7 88 3 00 3 6 3 3 666 6 1111 3 88888 3 88 1 888888 3 3 88 88 3 8888888888888 88 7 3 666 3 6666666666 0 7 6 0 88 666 1 00 3 11111111 7 3 7 88 3 33333333333 7 3 3 2 88 6 3 2 0 0 666 0 111 3 33 666666 5555 0 3 88 777 3333 999 88 5 1 888 5 22222 6 6 1 8888 3 3 7 3 2 99
lowQualScore : . . . .... . . . . .. . ... . .. . .. .............. . . ..... ....... . . ... . . ........ ... . ... . . . . . .... .. .... . . . . . . .. ... .. . . ... . ... ... . .. . . . . . . . . . ... . . . . . ..... . .. ... . . .. . . . . . . ... . . . . . . . . . . .. . . . . . . . . . . . ... . . . . . . ........................................................................................................... . . . . . . . . .. . . . . . ...... . . ...... .. .. . . . ..... . . ... .. . . ...... . ... ... . . . . . .. . . ... .. . . . . .. . . . . .. .. . ... . ..... . . . . . .. . . . . ..... . ...... . .. . . .... . . . .... ... . . . .... .. . . .. . . . . ... . . . . . .. . .. .. .. . .. . . . . .. . .. . . . . ... . .... . ..... . .. . ...... . . .. .. . ............. .. . . ... . .......... . . . . .. ... . .. . ........ . . . .. . ........... . . . . .. . . . . . ... . ... . .. ...... .... . . .. ... .... ... .. . . ... . ..... . . . .... . . . . . ..
lowQualScore : 0 4 4 4444 9 4 4 4 99 0 222 0 99 0 99 22222222222222 0 0 99999 6666666 0 1 333 0 7 33333333 333 7 777 7 0 7 8 8 0000 00 4444 0 0 0 0 0 0 44 000 00 0 0 000 8 000 000 0 88 0 8 0 8 0 0 0 0 0 222 2 0 0 0 0 22222 2 22 222 0 0 88 0 0 8 6 0 8 666 2 2 2 0 8 0 0 0 0 8 00 3 7 7 7 3 3 2 7 8 7 7 777 7 7 7 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 3 3 3 0 0 0 0 00 5 0 0 3 7 000000 3 3 333333 00 33 0 0 0 33333 0 0 333 00 0 0 000000 3 777 777 7 3 3 3 3 33 3 3 777 33 3 3 3 3 33 3 7 3 3 33 33 3 333 3 33333 3 3 3 2 0 88 2 0 0 0 55555 5 888888 2 88 0 0 8888 0 0 0 2222 333 3 7 3 3333 00 7 3 33 3 3 3 3 333 3 7 3 3 3 33 3 33 33 33 3 77 3 3 0 3 33 3 77 3 7 3 3 777 7 0000 3 77777 3 33 0 333333 3 3 77 33 3 0000000000000 33 3 3 777 3 7777777777 7 3 7 7 33 333 0 77 3 33333333 3 3 3 33 3 33333333333 3 3 3 0 33 7 3 0 0 0 888 0 000 2 88 888888 5555 0 2 33 555 0000 555 00 0 0 555 0 55555 7 7 0 3333 3 3 3 3 0 22
consensus : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTA-TTA-TA---TACAC--GTTCAC-TTG-A-GTGT-ACA-AATAATT----GAA--TTCTGT-TAT-AAAAC-ATA-T-T-CCAGCAC-ATAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTT---GGAAAAATCA---CTA-TAT-TGGGTCACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GACTGAAAT-GATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
Reference ( family-6661 ) : AAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAGT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-A---ATA-------GCCTAAGGAT-ATATAC-ACATGTA-TTA-TA---TACAC--GTTCAC-TTG-A-GTGT-ACA-AATAATT----GAA--TTC-GT-TAT-AAAAC-ATA-T-T-CCAGCAC-ATAAGTGGAGGAGTTCTGANT-TCAGT--A-TGAA-ACCA---TGTCTT---GGAAAAATCA---CTA-TAT-TGGGTCACCAT-TGGATGCTT-TTAAAGTG-CAAG-CAT-TGC-A-GTTC--TTTATGC-ATATAGACTATA-TCC-CA-GCCT--C--TTCAGCTCCATTTGGAAAGATTTTC-CAGCATT-G-CTGGAANAAT-CTCTCTT-CCTGACAG-ATGCA-GACTGAGAT-GATGAAAACTTTTTCCAAAAACTCCTGATGATT-AATGTA-ATTC-TA-AT-TGACTTG--CAGG-AGATTTT-ATATTT-CAC-AAAC-GAGATGATATTTG-TTTGTTCACAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAAATCGATTATTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-GCCACATCCCT-GAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGN--TT-ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTAANNA--TCCGNCAGGNANAACGT-----CGCNAATNC---AATNNATNATGAAACTCGGAA----T-TGAGGAATTCATCATTTA-ACACGA--TGGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATNCATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCAC-TAA-TATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGANTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCCTTTTTCTAACG-TTCGCTT-CTTT--CGACG-AACTTGTGGTTTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCTGG-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCTTAGTTGAAGGACACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTC-TCAG-CAATACC-TAGA-AAGAGGGATCA---GGATGTGTGCCC--CAATA-TCACCAGTAAATCA--TT-TTGGGAGG-AGAAC--GANGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTCCAAGG--GAGAA-GTCA---AGA---A---GA--AATAGATCG-AA-ATAATCAACCAGAGGCTTAGACTA-CCACACAGAAA-AGAT-----CCGGATTTTATTGTAACCGA--AGGCCAGA-CTANAGTAAT-TATT-TTTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAANTAC-TTTGAGA----AG-NT--ATTA-TCTAT-CTATCTATCT--ATCTT-TCAGGAAGCTGAATGAAGGTAGGGG-AA-AAGCCAAAT-TTGGGAAGTGTGTCTC--CGAGAATAAACGTTCCTAGAGGGTAAT-TACAACTTCA--ACCCCGGCGGTGAGCGAATTTTAANATTCTGAGTTGGGTANGTGGNTTCGTACTAGTGATCCAAAGACATATNAT----ATT-CC-ACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|1 : AATCATAGTTCCTGTTGCCAAGA-CTG----TTTGA-AAT-A-ATGA--A-TCAGT-G-TTG-G--T--ACTC--TTCAT-CAA----------AA-TT-TA-A---ATA-------GCCTAAGGATTATCTACCACAGATC-TTA-TACCCTACAC--CTTCACATTG-AAGTGT-ACAGAATAATTATTTGAA--TTC-TT-TATTACAACCATA-T-T-CCAGCAC-ATAA-TGGAGGAGTTCTGATA-TCAGT--A-TGAA-ACCGATTTGTCTTTATAAAAAATTCA---CGA-TAT-TGGTACACCAT-TGGATTCTT-TTAAAGTG-CAAGACATCTGCTA-GTT---TTTATGC-ATAATGACTATA-TCC-CACGCCT--CCTTTCAGCTCCACTTGGAAAGATTTTC-CAGCATTTG-CTGGAATAAT-CTCTCTTGCCTGACAGGATGCA-GACTGAAATCGATGCAAACTTTTTACAAAAACTC-TGAT-ATT-AATCGA-ATTCGTA-AT-TGACTTG--CAG--AGATTTTTATATTTTCAC-AAACCGAG-TGGTATTTG-TT-GTTCACAAAATTAAAATCTAGACAGCA---ACCATTGTCA-TTTTCAGTCAAAGTATAACGATTAT-AATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATCATGTTAATCTTCGC-CTTTATTGTATTATT-GTTAATTAA-TCGATTACGATTTGAAG-TAATCGTTGCCACATCCCT-AAACCATGTAAGCAACAGTCTTCTTTATACAAAGGTTTAGCCCTGTATTCCGCGATT-ACTTTTTCACATTCAAGTATCCACTCTG-CCAATAACTTCATTGATAATAAAAAAGTCCGCCAAGAACAATGTATATCCACAAATCCTCGAATTAATAATGAAATTAAAAAGCCATGTGAAGAATTCA-AATTTA-ACACAAATTGGGACT-GTTTTCGTTT-GTAGGGAGGTT-CAC-ATTGATTTAGATA-ACATGTATCACTCTGTCTGCCTG-TCTGTGCTGGT-CTGCGTATGTAAATATATAAT-TTAATATTCTACCACCAAAATGACTTTACAATCCGCAATTCATGTGTTAGATTTGTTG---AACTGGCCAA-GCACATATAAAATATAGTTTGCCAAGATAAAGGACGGAGCCTTTCAA-CACCAAAGCGTTTTGTTTTAAGTGCCCTTG-AGTACCTAAA-GAGTGCTGACAAACGGCAACAAA--ATAGTTATTCCTCTAAAGGAATACTGATCCGCAATTGTATGCACGTGTCTGTTTTGTAGATAAAA--AATATATTGTATAGATTGTGATGTGTC-GCTAG-ACAGGGGTTTACTATTCCTTTTTCTAACG-TTCGCTTTCTTT--CGACGTAA--TGAGGTTTGTGTGTCTGGAG-AGTC-TCTTGCAAAAGAG-TAAATTCAGCAG-GACTTCTGGAGAAACCAAACAAATCAACATACAACTTCGGTAAAACGATGAAATTACTAAGAAATCAAAAGCAATTCAACCCGTCCTTTCTAAACTATGTACTT-AT-GATACA-TATCTGGTTGATATTCTTAATTGAAG-ACACACCAAAGACGA-GAGTTTC--AAAAGCGCTTTT-TCAG-CAATACC-TAGATGAGAGGATTCA---GGATGTGTGGCC--CAATAAGCACTAATAAATCA--TT-TTGGGAGG-AGAAC--GACGTGG------GGAAAAACAACA-CTTCT-GTACCGACTTC--AGG--AAGAA-GTCA---AGACCCA---GA--AATAG-TCG-AA-A-AATCAACCAGAGGCTTAGACTACCCACACAGAAA-A-AT-----CTGGATTTTATT-CAACCGA--AGGCCAAACCTACAGTAATCTATT-TCTTCCTACCCCAGTTTTTACTCCC-AAAGAATAAAG-AC-TGTGAGA----AATCT--ATTATTCTAT-CTATTTATCTGCATCTT-TCCAGAAGCTGAATGAAGATAGCGG-AACAAGC--AAT-TTGGGCAGTGTGTCTCAACG-GAAT-AACGGTC--AGAGGGTAATCTACAACTTCAACACCCCGACGGTGA-C--ATTTT--TATTCT--ATTGAGTATAT--CTTC-TACTA-TA--CCAAAGACATATTAT----ATT-CC-ACTTG-TTTG-TGTGGACAAGA-G--TGGAA
gi|10 : AAATGAGTG-TGACAAA--GCAACAAATAATGATTAGTCCTCTAA-GGAA-ACTGATCC----ATGTATGCACGCGT------TGTAGATAAAA--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----c
gi|11 : -AGATTTG-ATATTT-CAC-AAAC-GGGATGATATTTG-TTTGTTCACTAA-TTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGT-AATCGATTATTAA
gi|12 : tAAA-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAA-CAC----------AATTT-TA-AAATATA-------GTCTAAGGAT-AT
gi|13 : ggaAGGGGTAA-AAGC-AAAT-TTGGCA---GTGTCTC--CGA----AAGTGTTCTTAGCAGGTATT-TACAA
gi|14 : TTGC-AAGG-CTG----TT------------GA--A----GT---TTG-G--TT-ACTG--TTCATTCAC----------AA-TT-TA-A---TTA-------GCCTAAGGAT-ATAtatttta
gi|15 : CAAAGA-ATATAGT----ATT-CC-ACTTGTTTTGTTGTGGACAGAGTGG
gi|16 : taaAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATT-A-aatatact
gi|17 : ntggaTA-ACATCA---AC-ATT-TCA-TTTTC-GTCAAAGTAaacaat
gi|2 : -GAAACATA-A-GCAACATTCTTCGTGATACAAAGGTTCAGCCCTGTATTCCGG--T--ATATTTTCA-ATTCAAGTATCCACTCTG-CCAATTACT------ATAGTANNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN----N-NNNNNAATTCATCATCTACACATG----GGGACTTGTTTTCGTTTTGTAGGTAGGTTTCAC-ATTGATTTAGATATCTATGTATCACTCTGTCTGCCTG-TCTGT-CTG-T-CTGCGCA--TAA-TATATA-TATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAA-CTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGCAA-CACCAG-----TTTGGTTTAAGTGCCCTGG-AGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTATGCACGCGT------TGTAGATAAAC--TATATATTG-ATA-ATTG--A-GTG-C-GCTAA-TCA----TTTACTATTCTTGTTTCTAACG-TTCACTT-CTTT--C-ACA-AACTTGTGG-TTTTTTGTC--GAG-AGCC-TCCTG-AAAAGAG-TAA-TCTAGCAG-GACTTCT-G-GAGAACAAACAAATCAACATACAACTTCGGTAGAACGATGAAAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTAGGTACTTTA-TGAT-AAATATCTGGTTGGTATTCTTAGTTGAAGACTACACCAAAGACGAAGAGTTTC--AAAAGCG-TTTCATCAGCCAGTACCGTAAG-AAGAGGGATCAT--GGATGT-TGCCCGTCAATA-TCAGCAGCAAATCATGTC-TTGGGAGGCAGAGCCGGAGGTGGAGGGGTGAAGGAACAGCC-CTTCTGGTACCGACTTTCAAGGTAGAGAAGGTCATGGAGA---AATTGAGTAATAGATCG-AA-GTAATCAACCAGAGGCTTAGACTA-CCACACAGAAACGGATTGTCGCTGGATTTTCTTGTGACCAGCTAGGCCAGA-CTATAGTAA--TGTTATTTTCCTA----AGTTTTTACTCCCGAAAGAAT-AATTACGTTTGAGAGAGCGG-GTAGATTA-TCTATCCTAT-TATCT--ATCTTGTCAGGAAGCTGAATGAATGTAAGGG-AA-ATG-CAAGTGTTGGGAAGTG---CTC--CG---ATAAACG-TGCTAGAGGGTAAT-TAC-TCTTCA--A---CAGCGGTGAGCGAATTTTAAGATTCTGAGTT-GATAAGTGGGTTCGTACTAGTGATCCAAA-ACATATGATGGTGATTGCCGACTTGTTTTG-TGTGGACAGGACGGCTGGAA
gi|3 : -TTAA-TCGATTACAATTTTGAG-TAATCGT-GC-ACATCCCTTGAAACATA-AAGCAACATTCTTCGTGATACAAAGGTTCAGCC-TGTATTCGGT--TTTATATTTTCA-ATTCAAGTATCCACTCTGACCAATTACT------ATAGTAACTA--TCTGATAGATAAAACGT-----CGCCAATAC---AATATATTATGAAACTCGGAA----T-TAAGGAATTCATCATT---ACACGA--TGG-ACTTGTTTTCGTTTTGTAGGTAGGTTTCACCATTGATTTAGATATTCATGTATCACTCTGTCTGCCTGGTCTGT-CTG-TTCTGCGCAC-TAA-CATATAATATTTGTATTCTACCAC-AAAATGACTTTACAATCC--AAT-CATGTGGTAGATTTGTTGCAAAACTGGTCAATGCACATATAAGATATAGT--GC--AAATAAAG-ACG---CCTTGGAACCACCAG-----TTTGGTTT-AGTGCCCTGGAAGTAC-TAAATGAGTG-TGACAAA--GCAACAAATAATGAGTAGTCCTCTAA-GGAA-ACTGATCC----CTGTAT-CACGCGT------TGT-GATAAAACTTATATATTG-ATA-ATTG--A-GTG-CGGCTAATTCA----TTTACTAT---TTGTTCTAACGTTTCACTT-CTTTAACAACA-AACTTGTGGTTTTTTTGTC--GAGAAGCCTTCCTG-AAAAGAGTTAA-T-TAGCAGCGACTTCTGG-GAGAACAAACAAATCAACATACAACTCGGGTAGAACGATG-AAT-ACTAG--AATCAAA-GCA--TTAACT--TCCTTT--AAACTATGTACTTTATTGATAAAATATCTGGTTGGTATTCGTAGTTGAAGGACACACAAAAGACGAAGAGTTTTCAAAAAGCG-TTTC--AAG-CAATA-C-TAGA-AAGAGGGATCAGTGGGATGTGTGCCC--T-ATA-TCACCAGTTAATCA--TTGTGGGGAAG-AGAAC--GGAGTGG------GGAAAACAAACATCTTCT-GTACCGACTT-CAAGG--GAGAA-GTCA---GGA---A---GA--AATAGATCGTAATATAAACAACTAGAGGGATAGACTG-CTACACAGAAA-AAAT-----CCGGA-TTTATTGTAACGAA--AGGCCA-A-CTCGAGTAAT-TATT-TT------CTCCAGTTTTT-CACCC-AAAGAATAAAATAC-TTTGACA----AG-AT--A-TA-TCTAT-ATATCTATCT--AT-GT-TCAGAAAACAGAATGAAG--AGGGG-AA-AAGCC-AAT-TTGGGA---GTGTCTC--CGAGAA-AAACGTT-CTAAAGGGTAAT-TACAAATTTA--ACCtact
gi|4 : AAT-ATAGTTCCTCTTCC-AAAGACTGGGTTTTTGACATT-AAGTGAGGA-TCAGT-G-TTGTGCTTT-ACTC--TTCAT-CTCGAGCGCTATGAA-TTGTA-G---ATGATACGCTGCTTAAGGAT-A---AC-ACAT-TA-TTA-TA-----CAC--ATTCAC-TTGGA-GTGTTACA-A-TA-TT----GAAAGTTCTATATAT-AAACC-ATA-T-TTCCAGCA--ATAAGTG-AGGAGTTCTGA-T-TCAGT--AATAAAGACCA---TG-CTT---GGAAAAACCAACATTA-TAT-TTGGTCACCATGTGGATGCTTCTTAAAGTG-CAAG-CAT-TGC-A-GTTTCTTTTATGC-ATATAGACTATA-TCCGCA-GCCT--C--TTCAGCTCCATTTTGAAAGATTTTC--AGCATT-GGCTGGAAGAATGCTCTCTT-CCTGACAG-ATGCA-GACTGAAAT-GATGAAGA--TTTTCCAAAAACTCCTGATGATT-A-TGTATATTC-TA-ATGTGACTTGTGCAGGCAGAGTTT-ATATT--CAC-AAAC-GAGATGGTATTTG-TTTGCTCAAAATATTAAA-TCTA-AC-TCAC--AT-ATT-TCA-TTTTCGGTCAAAGTAAATCGATTATTAATaccatgacacttattgtatggtatactctgttact
gi|4 : tggaTAATCATGTTAA-CTTCGC-CTT-ATTGTATTATT-GTTA-TTAA-TCGATTACGATTTTGAG-TAATCGT-G-CACATCCCT-gatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatcatgttaacttcgccttattgtattattgttattaatcgattacgattttgagtaatcgtgcacatccct
gi|5 : tggaaatatagttcctcttccaaagactgggtttttgacattaagtgaggatcagtgttgtgctttactcttcatctcgagcgctatgaattgtagatgatacgctgcttaaggataacacattattatacacattcacttggagtgttacaatattgaaagttctatatataaaccatatttccagcaataagtgaggagttctgattcagtaataaagaccatgcttggaaaaaccaacattatatttggtcaccatgtggatgcttcttaaagtgcaagcattgcagtttcttttatgcatatagactatatccgcagcctcttcagctccattttgaaagattttcagcattggctggaagaatgctctcttcctgacagatgcagactgaaatgatgaagattttccaaaaactcctgatgattatgtatattctaatgtgacttgtgcaggcagagtttatattcacaaacgagatggtatttgtttgctcaaaatattaaatctaactcacatatttcattttcggtcaaagtaaatcgattattaatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--A-TCAAT-G-TTG-G--TT-ACTG--TTCAT-CAC----------AA-TT-TA-AT--ATA-------GCCTAAGGAT-ATAT---ACATGTA-TTA-TA---CACAT--GCTCAC-TTG-T-GTAT-ACA-AATAATT----GAA--TTCTGT-TAT-AAAAA-ATATT-T-CCGGCAT-ATAAGTGGAGGGGTTCTGAAT-TCAGTAGA-TGGA-ACCA---TGTCTT---GGACAAATCA---CTATTGTATGGGTCACCAT-AGGGTGCTT-TTAAAGTG-CAAGCCAT-T-C-A-GTTC--TTTAT-C-ATATAGACTATA-T-C-CA-GCCT--C--TTCAGCT-CATTTGAAAAGATTTTT-CAGCATT-G-CTGGAATAAT-CTTTCTT-CCTGACAG-ATGCAGGACTGA-AT-GATGAAA---CTTTCCAAAAGCTCCTGATGATTAAATGTA-ATTA-TATAT-GGAC-TG--CAGG-AGATTTG-ATATTT-CAC-AAATGGAGATGATATTTGTTTTGTTCA-ATAATTAAA-TGTA-ACATCA---AC-ATT-TCATTTTTC-GTC
gi|6 : tggaAAT-ATAGTTCCTGTTCC-AAGA-CTG----TT--A-ATT-A-ATGA--A-TCAGT-GGTTG-G--TTTACTGCTTTCAT-AA-----------AA-TT-TA-AT--ATAAA-----GCCTAAGGA----ATAC--CATGTAGTT-------TAC-C--ATTCAC-TTG-A-GTGT-A---AATAATTT---GAAG-TTC-GA-TAT-ATAAC-ATA-TAT-TCAGCAC-ATAAGTTGAGGAGTTCTGATTATCAGT--A-TGAA-ACCA---TGTCTT---AGAAAAAT-A---CTAGTA--TGGGTCACCAT-TGGATGCTT-T--AAGTGAGAAG-CAT-TGC-A-GTTC--TTTATGCTAAATAGACTATAGGCC-CA-GCCCTGT--TTCAG--CNNNNNNNNNNNNNNNNN-NNNNNNN-N-NNNNNNNNNN-NNNNNNN-NNNNNNNN-NNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNTC-TA-AT-TGACTTG--CAGGAAGATTTT-ATA-TT-CACAAAAC-GAGATG-TATTTG-TTTGTT--CAAAATTAAA-TCTA-ACATCA---AC-ATT-TCA-TTTT
gi|7 : ggaT-ATAGTTCCTGTTGC-AAGG-CTG----TTTAA-ATTTA-AAGA--A-TCAGTTG-TTG-G--TT-ACTG--TTCAT-AA-----------AA-TT-GATA---ATACATGT--ACCTAAGGAT-ATATAC-A--TGTA-TTAATA---T-CAC--ATTCAC-TTG-A--TGT-ATA-AATAATT----GAA--TTT-GT-TAT-AAAAC-ATA-T-T-TCAGCATAATAAGCGGA-GAGTTCTGAAT-TCA-T--A-TGAA-ACCA---TGTCTT---GGAAAAATCA---CTA-TAT-TTGGTCA-CAC-TGGGTGC-T-TTAAAGTG-CAAG-CAT-TGC-ACGTTC--TTTATAC-ATATAGACTATA-TCC-CA---CT--C--TTCAGCTCCATTT-GAAAGATTTTCTCAGCATT-G-CTGGAAGAAT-CTCTCT---CTGACTG-ATGCA-GAC-GTGAT-GATCGAAACTTTTC---AAAACTCCTGATGATT-AATGTA-ATTC-TA-TG-CGACTTG--CAGG-AG--TTT-ATATTT-CAC-AAAC-GAG-TGATA-TTG-TTTGTTCA-AAAATTAAA-TCTA-ACATCACACAC-ATT-TCA-TTTTC-GTCtcg
gi|8 : tggaacTAATCATGTTAAACTTCGCGCTT-ATTGTATTATTTGTTA-TTAAATCGATTAAGATTTTGAGATAATCGT-GCCA---CCTG-GAAACATA-A
gi|9 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatAAT-ATAGTTCCTGTTGC-AAGG-CTG----TTTGA-ATT-A-GTGA--ATTCAAT-G-TTG-G--TT-ACTG--TT-AT--AC----------AA-TT-AA-T---ATA-------GCCTAAGGAT-ATAT---ACATGTA-TTA-T----TACACAGGTTTAC-TTG-A-GTGT-ACA-gc