lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 11 111 222222222222 111 2222 22222 33333333333333 44 2 222222222222222 111111111111111111111111111111111111111111111111 1 1111 4444444444444444444444444444444444444444444444444 111111 1 11 1 222 111 3 11 111
lowQualScore : 4 77 4 4 3 5 4 4 7 55 777 11 777 8 3 8 55 000 4 55 4 777777777777 3 777 3 3 3 3 3 3 0 1111 4 4 3 8 11111 55 4 3 5 3 3 66 4 00000000000000 11 4 4 4 8 4 4 888 5 0 777 5 888888888888888 66 4 99999 222222222222222222222222222222222222222222222222 4 4 777 4 4 4 777 4 888 5 0 666 0 5 5 2222 5 5 7777777777777777777777777777777777777777777777777 5 77 66 77 666666 1 5 22 0 8 55 6 11 8 8 6 6 8 000 111 2 11 1 6 222 6 8
lowQualScore : . .. . . . . . . . .. ... .. ... . . . .. ... . .. . ............ . ... . . . . . . . .... . . . . ..... .. . . . . . .. . .............. .. . . . . . . ... . . ... . ............... .. . ..... ................................................ . . ... . . . ... . ... . . ... . . . .... . . ................................................. . .. .. .. ...... . . .. . . .. . .. . . . . . ... ... . .. . . ... . .
lowQualScore : 0 00 0 0 6 8 0 0 6 55 000 00 000 0 5 0 55 222 0 11 0 000000000000 6 999 6 6 6 6 6 6 8 9999 4 0 8 0 00000 55 0 6 9 6 6 11 4 33333333333333 77 4 4 4 9 4 4 888 0 0 111 0 444444444444444 99 4 99999 777777777777777777777777777777777777777777777777 4 4 888 4 4 0 000 4 888 0 5 111 1 0 0 1111 7 7 0000000000000000000000000000000000000000000000000 7 99 44 99 444444 4 7 00 8 0 44 0 00 0 0 0 2 0 888 777 0 44 0 7 888 7 0
consensus : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAAT-CGGT-GACCTTTNGTTT--AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-ACTAC--GTC-ATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACTCATN---ACT------TTTTCAGGCA-TACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATT-A-CA-TCAGTATG--A------------AAA--CGTCCG-TATACA---ATCA---------------T--------------AT--------------TATTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTATTTATTTAT--TTCAT-CCAA-GTAAATTAATGNG-GAA---TCGC---TGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
Reference ( gi|3 ) : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAAT-CGGT-GACCTTTAGTTT--AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-ACTAT--GCT-ATCTTCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACTCAAA---ACT------TTTTTAGGC--TACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCA-T-A-CA-TCAGTATG--A------------AAA--CGTCCG-TATACA---ATCA---------------T--------------AT--------------T-TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTGTTTATTTAT--TTCAT-CCAA-GT-AATTAATGAG-GAA---TCAC---TGTTTA-CACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|5 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAAT-CGGT-GACCTTTAGTTT--AC---G--T---GTG-TTCTAGGTTG-TT--TTC-GG-GT-GTTG-ACTAT--GTC-ATCT-CTTTTAC-CGTAGTGCTT-GT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAATATTTTTTTTCTTCCG-ATAA-TGAAGCACAA-A--GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACTCAAA----CTCAAAACTTTTTAGGCA-TACCTTGAATT-CAATA-TA-AATGTATAC-A-AAAG-TCTGTAA---TGT-CTCA-T-A-CA-TCAGTATG--A------------AAAAACGTCCG-TATACA---ATCA---------------T--------------AT--------------TATTG-TCCACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGACAA-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGT
gi|7 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAAT-CGGT-GACCTTTAGTTT--AC---G--T---GTG-TTCTAGGCTGTTT--T-T-GG-GT-GTTG-ACTAC--ATC-ATC-TCTTTTAC-TGTAGTGC-TTGT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAATATTTTT----TTCCG-ATAA-TGAAGCAC-A-AA-GCGGTTAG--TTTGCAAG-CTAT-GAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-GCTCATC---ACT------TTTTTAGGCA-TACCTTGAATT-CAATA-TG-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATT-A-CA-TCAGTATG--A------------AAA--CGTCCG-TATACT---ATCATGTAGGTCTGCTCT-T--------------AT--------------TATTT-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TA
gi|14 : ataTCGTCGACT-GCCC-TAT-T-------------------T-CGAT-GACCTTTTGTTT--AC---GCAT---GTGCTTTTTGGTTT-TT--G-G-GG-GA-GTTG-ACTAC--GTT-A-CCCCTTTTGC-CGTAGTGC-TCGT-AAA-C-ATACTGAG-A-ATCCGT-ATT
gi|18 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-Cagatttcgttgat
gi|4 : atctaCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAAT-CGGT-GACCTTTAGTTT--AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-ACTAT--G-T-ATCT-CTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AAGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA--GAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACTCAAA---ACT------TTTTTAGGCA-TACCTTGAATT-CAATA-TA-AATGTATACCA-AAAG-TCTGTAA---TGT-C-CA-T-A-CA-TCAGTATG--A------------AAA--CGTCCG-TATACA---ATCA---------------T--------------AT--------------T-TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AA-TTAGTTGCT-TTATTAGTAGGTAC-ATTG-TTATTTAT--TTCAT-CCAA-GT-AATTAATGAG-GAA---TCAC---TGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGA
gi|11 : CGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTTAAT-CATT-GACCTTTTGTTT--AT---G--T---GTG-TGCTAGGCTG-TT--T-T-GGAGT-GTTG-ACTGC--GTC-ATC-TCTTTTAC-CGTAGTGC-TTGT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAACATTTTTTT-CT---G-ATAA-TGAAGCAC-A-AA-GCGATTAG--TTTACAAG-CTAT-CAACACCAGCACC-CCGAAA-TTG
gi|1 : GTCGACTTGCCCCTAT-T-TCAGTGA-CT-ACCTAAAT-CGGT-GACCTTTACTTT--AC---G--T---GTG-TTCGAGGCTGTTT--T-C-GG-GT-GTTG-ACTAC--ATTCATTCTCTTTTA--CATAGTGC--TGT-AAA-C-ATACTGGGCA-GTCCGTGATTTCATATTTTTT---TTTCG-ATAATTGAAGCACAA-AG---CGTTAG--TTTGCAAG-CTATGAAACAGCAGCACC-CCAAAT-TTGAGGGCCCATTTGACTCATC---ACT------TTTTTAGGTCATACCTTGAATT-CAATA-TA-AA-GTATACCAGAAAGTTCTGTAAATTTGT-CTCATT-ACCATTCAGTATG--A------------AAA--TGTCC--TATTAA---ATCATGCTAGGTCTGCTCTT--------------AT--------------A-TTT-TC-ACATG---ATACCTGTTGTAAC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAATAAGGTGACGTCAACATTTTCGAGT-T-CAATCTGAC-AGT----GTGTTTTCATTTACGACGATATA-TTCA---A--------A-----TA--------AGATTACATAGG--------A-TTGG--CAG-TTTTTTGGAAT------GGGAATAAAGGAAATTCAGGTGCTATTATTAGTAGG-AC-ATTATTTA-TTAT--TTCAT-CCAA-GTAAATTAATGAG-GAAAATTCAC---TGTTTACCAC-TAAGGTCACCGAAAA--CTGGTTCACTC-GACGAT
gi|2 : tGTCGACT-GCCC-TAT-TCTCAGTGA--TGACCTAA-T-CGGT-GACCTTTG--TT--AC---G--T---GTG-TGCTAGGCTG-TTCTT-C-GC-G--GTTG-ACTAC--GTTCATCTCTTTTTACGCATAGTG--TTGT-AAA-C-ATACTGGG-A-GTTCGT-ATTCAATATTTTT----TTCCGAATAA-TGAAGCTCAA-AG---CGTTAAGCTTTGCAAG-CTAT-CAA-ACCAGCACC-CCGAAATTTGA--TCCCATTT-ACTTGCATTCAC-------TTTTTAAGCA-TA-CTTGAATC-TAATATTA-AA-GAGTACCC-AAAG-TCTGT-A---TGTCCTCATT-A-CA-TCAGTATGAAA------------AAA--CGTCCGTTATACAAATATGA---------------C--------------GT--------------C-CTGCTC-TCA-G---TTACCC--TGT-ACGGTCA---CCTGATGTGTAA---A--GTCACCGGAAATTGGTGACGTC-ACATTTCAGAGT-C-CA--CTGAC-A-T----GGATTTTCA-TTACGACGATATATTTCACATA--------AGGGATTA--------A---TA-----G--------ACTTGGCCCAGTTTTTT--GGAT------GGAATTAAAGGAAATTTATTTGCT-TTATAAGTAGGTACGATTATTTATTTAT--TTCATCCCAA-GTAAATTAATGTG-GAAAT-CCAC---TGTTTACCAC-TAAGGTCA-AG-AAAAGCTGG-TCACTCGGACGA
gi|8 : GTCGATT-GCCC-TGTCT-TCGGTGAACTGACCTAA-T-CGGTTGACCTTT-GTTTTTAC---G--CTGCGCG-TT----GTTG-TT--T-CCGG-GTTGTTG-AGCGTTCGTC-ATCACTTTCGGC-CGTAGTGCTGTGT-CAATC-ATACAGGG-A-ACCGGT-CTTCAATGCTTTTTT---TCCA-AAAA-TGAAGCACAA-AG-GTAA--AG--TTTGCAAAACTAT-CAACACCAGCACCTCCAAAA-TTAA--GCCC-TTT-ACTTATT---ACT------TTTTCTGACA-TACCTTCAATTATAATA-TAGAA-GTATATC--AAAG-TGTATAA---TTT-CTCACT-A-TA-TCAATATG--GAACACTTCCGTTAAA--CGTCTG-TCTAT-----TAA---------------T--------------A---------------T-TTG-TC-ACGTGACTATATGTG-TGT-AC-GTCA---
gi|6 : tccgGACT-GTCC-TAT-T-TCGGTGA-CTGACCTAAAT-CGAT-GACCTGTTGTTT--TC---GCTT---GCG-CTTT--GTTG-TT--T-CCGG-GT-GTTG-ACTAC--GTC-ATCG-CTTTTGC-CGTAGTGCTT-GT-AAA-T-ATACTGGG-A-GTTCGT-CTTCAA--------------------A-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCACCACC-CCGAAA-TTAA--GCCCACTT-GCTTATG---ACT------TTTTCAGGCA-TACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---TTT-TTCA-C-----------------------------------------TATA------TCA---------------T------------------------------C-TTG-TC-AT-TG--------TG-TGA-AC-GTCA---CCTG-TATTTAATTTAAGGTCACC-GAAATAGGTGACGTCAATATTTTT-AGTATGCAATCTGAC-A-G----GTGTTTTAA-TTACGACGATATA-TTCA---A--------A-----TACTGGATTAA---TA-----G--------A-TTGG--TAT-TTTTT--GGAT------GGGAACAAAGG-AATGTAGTTGCT-TTA----TAGATAG-ATCTTATAATTATTATTAAT-CCAATGT-AATTGATGCG-AAA---TCGC---T
gi|13 : GA-CTGCCCTAATTTCGAT-GACTT---GTTT--ACCGCA--T---GTGCTTTTTGGTT--TT--T-G-GG-GA-GTTGGACTACCGGTT-ACCC-CTTTTGC-CGTAGTGC-TCGTAAAA-CGATACTGGA-A-ATCCGT-A
gi|16 : tcgtc-CGTAGTGCTT-GT-AAA-C-ATACTGGG-A-GTTCGC-ATTC-----CTTTTT-TTTCCG-ATAA-TGAAGCACAA-AAAG--GTTAG--GTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-attagatttgcgtttgataa
gi|15 : AA-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCAGCACC-CCGAAA-TTAA--GCCCACTT-GCTTATG---ACT------TTTTCAGGCA-TACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---
gi|17 : T-CAACACCAGCACC-CCGAAA-TTGA--GCCCA-----CCCA--------------TTTTCAGGCA-TACCTTGAATT-CAATT-TA-AA-GTATACCA-AAAG-T
gi|12 : T-CTCA-TTA-CA-TCAGTATG--A------------AAA--CGTCCG-TATCCA---ATCA---------------TGTACGTCTGCTCTCAT--------------TATTG-TC-ACATG---ATACCTG-TGT-TC-GTCA---CCTC-TATTTAA---AAGGTCACC-GAAATAGGTAACGTCAACATTTCCGAGT-T-CAATCTGAC-A-
gi|10 : GTCCG-TATACA---ATCA---------------T--------------GTACATCTGCTCTTCTTATTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-C-ATCTGAC-A-TGTACGTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TG-----GATTAATAAA-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTA
gi|9 : -GTCAAACCCTG-TATTAAA---AAGATCACC-GAAATAGGTGACGTCAACATTTTGGAGT-A-CCATCTGAC-A-T----GTGTTTTTA-TTACGATGATAAA-TTCA---AAATACTGGA-----TA--------A---CA-----G--------A-TTGG--TA--TTTTT--TGATGGGAAAGGGAACAAAGG--ATTTAGTTGTG-TTACAGGTAGGTAC-ATTATTTATTTAT--TTAAT-CCAA-GT-AATTAATGTGAAAA---CCGC---TGTTTATCACT--AAGTCACCG-AAA---TGG-TCACTC-GACG
gi|6 : ttcagttgcaatttcttccgtgttcatacgttaactttt---TCACCTGTATTTA--ATTTAAGGTCACCG-AAA--TAGG-TGAC
gi|14 : gactgtcctatttcggtgactgacctaaatcgatgacctgttgttttcgcttgcgctttgttgtttccgggtgttgactacgtcatcgcttttgccgtagtgcttgtaaatatactgggagttcgtcttcaaatgaagtacgagaaggtaaatttgcagactaaaaacaccaccaccccgaaattaagcccacttgcttatgactttttcaggcatacctttaatttgatataaagtataccaaaagtctataatttttcactatatcatcttgtcattgtgtgaacgAAGGTCATCG-AAA--TAGG-GCAGTC-GACGAgtcaatatttttagtatgcaatctgacaggtgttttaattacgacgatatattcaaatactggattaatagattggtattttttggatgggaacaaaggaatgtagttgctttatagatagatcttataattattattaatccaatgtaattgatgcgaaatcgct
Alignments
lowQualScore : 11 111 1 111 11111 22222 111 111111 9999999999999999999999999999999999999999999999999999 1111 3333333333333333333333333333333333333333333333333 111111 1 2 222 11 11
lowQualScore : 3 3 3 3 3 4 3 1 3 666 00 666 7 2 3 55 222 3 33 3 3 3 55 7 1 1 3 444 3 3 3 6 3 00000 4 3 7 00000 55 3 3 0 3 3 55 4 55 000 111111 3 4 4 4 4 8 4 4 777 4 6 4 4 66 4 66 8 777 5555555555555555555555555555555555555555555555555555 4 4 777 4 4 3 666 4 777 4 4 4 4 4 0000 5 5 0000000000000000000000000000000000000000000000000 5 66 5 66 444444 0 5 0 6 99 7 6 6 3 1 6 000 0 3 11 8 11 8 8
lowQualScore : . . . . . . . . . ... .. ... . . . .. ... . .. . . . .. . . . . ... . . . . . ..... . . . ..... .. . . . . . .. . .. ... ...... . . . . . . . . ... . . . . .. . .. . ... .................................................... . . ... . . . ... . ... . . . . . .... . . ................................................. . .. . .. ...... . . . . .. . . . . . . ... . . .. . .. . .
lowQualScore : 3 3 3 3 3 3 6 0 6 444 00 444 3 4 6 00 000 6 88 6 6 6 00 3 8 1 3 222 3 3 3 7 3 22222 0 6 3 00000 00 6 3 4 3 3 55 0 55 000 555555 0 0 0 0 0 0 0 0 888 4 2 4 4 11 4 11 0 000 5555555555555555555555555555555555555555555555555555 0 0 000 0 0 6 444 0 888 4 4 4 4 4 6666 0 0 9999999999999999999999999999999999999999999999999 0 99 0 99 444444 0 0 8 7 22 3 7 7 7 0 7 888 7 2 44 0 00 0 0
consensus : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
Reference ( family-6645 ) : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GTAAATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|1 : GTCGACTTGCCCCTAT-T-TCAGTGA-CT-ACCTAAATCGGT-GACCTTTACTTT-AC---G--T---GTG-TTCGAGGCTGTTT--T-C-GG-GT-GTTG-A-C-TAC--ATTCATTCTCTTTTA--CATAGTGC--TGT-AAA-C-ATACTGGGCAGTCCGTGATTTCATATTTTTT---TTTCG-ATAATTGAAGCACAA-AG---CGTTAG--TTTGCAAG-CTATGAAACAGCAGCACC-CCAAAT-TTGAGGGCCCATTTGACT--CA-TCACT------TTTTTAGGTCATACCTTGAATT-CAATA-TA-AA-GTATACCAGAAAGTTCTGTAAATTTGT-CTCATTACCATTCAGTATG--AAA-A--TGTCC--TATTAA---ATCA--------------T--------------GCTAGGTCTGCTCTTATA----TTT-TC-ACATG---ATACCTGTTGTAAC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAATAAGGTGACGTCAACATTTTCGAGT-T-CAATCTGAC-AGT----GTGTTTTCATTTACGACGATATA-TTCA---A--------A-----TA--------AGATTACATAGG--------A-TTGG--CAG-TTTTTTGGAAT------GGGAATAAAGGAAATTCAGGTGCTATTATTAGTAGG-AC-ATTAT--TTA-TTATTTCAT-CCAA-GTAAATTAATGAG-GAAAATTCACTGTTTACCAC-TAAGGTCACCGAAAA--CTGGTTCACTC-GACGAT
gi|10 : tGTCCG-TATACA---ATCA--------------T--------------GTACATCTGCTCTTCTTA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-C-ATCTGAC-A-TGTACGTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TG-----GATTAATAAA-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTA
gi|11 : CGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTTAATCATT-GACCTTTTGTTT-AT---G--T---GTG-TGCTAGGCTG-TT--T-T-GGAGT-GTTG-A-C-TGC--G-TCAT-CTCTTTTAC-CGTAGTGC-TTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAACATTTTTTT-CT---G-ATAA-TGAAGCAC-A-AA-GCGATTAG--TTTACAAG-CTAT-CAACACCAGCACC-CCGAAA-TTG
gi|12 : T-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATCCA---ATCA--------------TGTACGTCTGCTCTCAT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-TC-GTCA---CCTC-TATTTAA---AAGGTCACC-GAAATAGGTAACGTCAACATTTCCGAGT-T-CAATCTGAC-A-
gi|13 : TCGTCGACT-GCCC-TAA-T-T-----------------TCGAT-GAC---TTGTTT-ACCGCA--T---GTGCTTTTTGGTT--TT--T-G-GG-GA-GTTGGA-C-TACCGG-TTA-CCCCTTTTGC-CGTAGTGC-TCGTAAAA-CGATACTGGA-AATCCGT-A
gi|14 : TCGTCGACT-GCCC-TAT-T-TC------------------GAT-GACCTTTTGTTT-AC---GCAT---GTGCTTTTTGGTTT-TT--G-G-GG-GA-GTTG-A-C-TAC--G-TTA-CCCCTTTTGC-CGTAGTGC-TCGT-AAA-C-ATACTGAG-AATCCGT-ATTattagatttgcgtttgataa
gi|15 : AA-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCAGCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---agatttcgttgat
gi|16 : -CGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGC-ATTC-----CTTTTT-TTTCCG-ATAA-TGAAGCACAA-AAAG--GTTAG--GTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-
gi|17 : T-CAACACCAGCACC-CCGAAA-TTGA--GCCCA-----CC--CA-T-----------TTTCAGG-CATACCTTGAATT-CAATT-TA-AA-GTATACCA-AAAG-T
gi|18 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-C
gi|2 : atctaGTCGACT-GCCC-TAT-TCTCAGTGA--TGACCTAA-TCGGT-GACCTTTG--TT-AC---G--T---GTG-TGCTAGGCTG-TTCTT-C-GC-G--GTTG-A-C-TAC--GTTCATCTCTTTTTACGCATAGTG--TTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTT----TTCCGAATAA-TGAAGCTCAA-AG---CGTTAAGCTTTGCAAG-CTAT-CAA-ACCAGCACC-CCGAAATTTGA--TCCCATTT-ACTTGCATTCACT------TTTT-AAG-CATA-CTTGAATC-TAATATTA-AA-GAGTACCC-AAAG-TCTGT-A---TGTCCTCATTA-CA-TCAGTATGAAAAA-A--CGTCCGTTATACA---A--A--------------T--------------ATGACG----------TC----CTGCTC-TCA-G---TTACCC--TGT-ACGGTCA---CCTGATGTGTAA---A--GTCACCGGAAATTGGTGACGTC-ACATTTCAGAGT-C-CA--CTGAC-A-T----GGATTTTCA-TTACGACGATATATTTCACATA--------AGGGATTA--------A---TA-----G--------ACTTGGCCCAGTTTTTT--GGAT------GGAATTAAAGGAAATTTATTTGCT-TTATAAGTAGGTACGATTAT--TTATTTATTTCATCCCAA-GTAAATTAATGTG-GAAAT-CCACTGTTTACCAC-TAAGGTCA-AG-AAAAGCTGG-TCACTCGGACGA
gi|3 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAT--G-CTATCTTCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-C-TACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCA-TA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTGT--TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTA-CACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|4 : CGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAT--G-T-ATCTC-TTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGGAAGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA--GAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATACCA-AAAG-TCTGTAA---TGT-C-CA-TA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AA-TTAGTTGCT-TTATTAGTAGGTAC-ATTG---TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGA
gi|5 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--TTC-GG-GT-GTTG-A-C-TAT--G-TCATCTC-TTTTAC-CGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTTTCTTCCG-ATAA-TGAAGCACAA-A--GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA--AACTCAAAACTTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATAC-A-AAAG-TCTGTAA---TGT-CTCAT-A-CA-TCAGTATG--AAA-AAACGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TCCACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGACAA-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGT
gi|6 : GACT-GTCC-TAT-T-TCGGTGA-CTGACCTAAATCGAT-GACCTGTTGTTT-TC---GCTT---GCG-CTTT--GTTG-TT--T-CCGG-GT-GTTG-A-C-TAC--G-TCATCGC-TTTTGC-CGTAGTGCTT-GT-AAA-T-ATACTGGG-AGTTCGT-CTTCAA--------------------A-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCACCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---TTT-TTC----------------------A--C------TATATC---ATC----------------------------------------------------TTG-TC-AT-TG--------TG-TGA-AC-GTCA---CCTG-TATTTAATTTAAGGTCACC-GAAATAGGTGACGTCAATATTTTT-AGTATGCAATCTGAC-A-G----GTGTTTTAA-TTACGACGATATA-TTCA---A--------A-----TACTGGATTAA---TA-----G--------A-TTGG--TAT-TTTTT--GGAT------GGGAACAAAGG-AATGTAGTTGCT-TTATAGATAGAT-C--TTATAATTA-TTA-TTAAT-CCAATGT-AATTGATGCG-AAA---TCGCT
gi|7 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGCTG-TT--T-TTGG-GT-GTTG-A-C-TAC--A-TCATCTC-TTTTAC-TGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-C---CG-ATAA-TGAAGCACAA-A--GCGGTTAG--TTTGCAAG-CTAT-GAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-GCT--CA-TCACT------TTTTTAGG-CATACCTTGAATT-CAATA-TG-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACT---ATCATGTAGGTCTGCTCTT--------------AT--------------TA----TTT-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TA
gi|8 : ataGTCGATT-GCCC-TGTCT-TCGGTGAACTGACCTAA-TCGGTTGACCTTTGTTTTTAC---G--CTGCGCG-TT----GTTG-TT--T-CCGG-GTTGTTG-AGCGTTC--G-TCATCACTTTCGGC-CGTAGTGCTGTGT-CAATC-ATACAGGG-AACCGGT-CTTCAATGCTTTTTT---TCCA-AAAA-TGAAGCACAA-AG-GTAA--AG--TTTGCAAAACTAT-CAACACCAGCACCTCCAAAA-TTAA--GCCC-TTT-ACT--TA-TTACT------TTTTCTGA-CATACCTTCAATTATAATA-TAGAA-GTATATC--AAAG-TGTATAA---TTT-CTCACTA-TA-TCAATATG--GAACA--CTTCCGTTAAACGTCTGTC---------------T--------------AT--------------TAATATTTG-TC-ACGTGACTATATGTG-TGT-AC-GTCA---
gi|9 : tccg-GTCAAACCCTG-TATTAAA---AAGATCACC-GAAATAGGTGACGTCAACATTTTGGAGT-A-CCATCTGAC-A-T----GTGTTTTTA-TTACGATGATAAA-TTCA---AAATACTGGA-----TA--------A---CA-----G--------A-TTGG--TA--TTTTT--TGATGGGAAAGGGAACAAAGG--ATTTAGTTGTG-TTACAGGTAGGTAC-ATTAT--TTATTTATTTAAT-CCAA-GT-AATTAATGTGAAAA---CCGCTGTTTATCACT--AAGTCACCG-AAA---TGG-TCACTC-GACG
Alignments
lowQualScore : 11 111 1 111 11111 22222 111 111111 9999999999999999999999999999999999999999999999999999 1111 3333333333333333333333333333333333333333333333333 111111 1 1 222 11 11
lowQualScore : 3 3 3 3 3 4 3 1 3 666 00 666 7 2 3 55 222 3 33 3 3 3 55 7 1 1 3 444 3 3 3 6 3 00000 4 3 7 00000 55 3 3 0 3 3 55 4 55 000 111111 3 4 4 4 4 8 4 4 777 4 6 4 4 66 4 66 8 777 5555555555555555555555555555555555555555555555555555 4 4 777 4 4 3 666 4 777 4 4 4 4 4 0000 5 5 0000000000000000000000000000000000000000000000000 5 66 5 66 444444 0 5 0 6 99 7 6 6 3 1 6 000 0 3 11 8 11 8 8
lowQualScore : . . . . . . . . . ... .. ... . . . .. ... . .. . . . .. . . . . ... . . . . . ..... . . . ..... .. . . . . . .. . .. ... ...... . . . . . . . . ... . . . . .. . .. . ... .................................................... . . ... . . . ... . ... . . . . . .... . . ................................................. . .. . .. ...... . . . . .. . . . . . . ... . . .. . .. . .
lowQualScore : 3 3 3 3 3 3 6 0 6 444 00 444 3 4 6 00 000 6 88 6 6 6 00 3 8 1 3 222 3 3 3 7 3 22222 0 6 3 00000 00 6 3 4 3 3 55 0 55 000 555555 0 0 0 0 0 0 0 0 888 4 2 4 4 11 4 11 0 000 5555555555555555555555555555555555555555555555555555 0 0 000 0 0 6 444 0 888 4 4 4 4 4 6666 0 0 9999999999999999999999999999999999999999999999999 0 99 0 99 444444 0 0 8 7 22 3 7 7 3 0 7 888 7 2 44 0 00 0 0
consensus : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
Reference ( family-6645 ) : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|1 : GTCGACTTGCCCCTAT-T-TCAGTGA-CT-ACCTAAATCGGT-GACCTTTACTTT-AC---G--T---GTG-TTCGAGGCTGTTT--T-C-GG-GT-GTTG-A-C-TAC--ATTCATTCTCTTTTA--CATAGTGC--TGT-AAA-C-ATACTGGGCAGTCCGTGATTTCATATTTTTT---TTTCG-ATAATTGAAGCACAA-AG---CGTTAG--TTTGCAAG-CTATGAAACAGCAGCACC-CCAAAT-TTGAGGGCCCATTTGACT--CA-TCACT------TTTTTAGGTCATACCTTGAATT-CAATA-TA-AA-GTATACCAGAAAGTTCTGTAAATTTGT-CTCATTACCATTCAGTATG--AAA-A--TGTCC--TATTAA---ATCA--------------T--------------GCTAGGTCTGCTCTTATA----TTT-TC-ACATG---ATACCTGTTGTAAC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAATAAGGTGACGTCAACATTTTCGAGT-T-CAATCTGAC-AGT----GTGTTTTCATTTACGACGATATA-TTCA---A--------A-----TA--------AGATTACATAGG--------A-TTGG--CAG-TTTTTTGGAAT------GGGAATAAAGGAAATTCAGGTGCTATTATTAGTAGG-AC-ATTAT--TTA-TTATTTCAT-CCAA-GTAAATTAATGAG-GAAAATTCACTGTTTACCAC-TAAGGTCACCGAAAA--CTGGTTCACTC-GACGAT
gi|10 : tGTCCG-TATACA---ATCA--------------T--------------GTACATCTGCTCTTCTTA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-C-ATCTGAC-A-TGTACGTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TG-----GATTAATAAA-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTA
gi|11 : CGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTTAATCATT-GACCTTTTGTTT-AT---G--T---GTG-TGCTAGGCTG-TT--T-T-GGAGT-GTTG-A-C-TGC--G-TCAT-CTCTTTTAC-CGTAGTGC-TTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAACATTTTTTT-CT---G-ATAA-TGAAGCAC-A-AA-GCGATTAG--TTTACAAG-CTAT-CAACACCAGCACC-CCGAAA-TTG
gi|12 : T-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATCCA---ATCA--------------TGTACGTCTGCTCTCAT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-TC-GTCA---CCTC-TATTTAA---AAGGTCACC-GAAATAGGTAACGTCAACATTTCCGAGT-T-CAATCTGAC-A-
gi|13 : TCGTCGACT-GCCC-TAA-T-T-----------------TCGAT-GAC---TTGTTT-ACCGCA--T---GTGCTTTTTGGTT--TT--T-G-GG-GA-GTTGGA-C-TACCGG-TTA-CCCCTTTTGC-CGTAGTGC-TCGTAAAA-CGATACTGGA-AATCCGT-A
gi|14 : TCGTCGACT-GCCC-TAT-T-TC------------------GAT-GACCTTTTGTTT-AC---GCAT---GTGCTTTTTGGTTT-TT--G-G-GG-GA-GTTG-A-C-TAC--G-TTA-CCCCTTTTGC-CGTAGTGC-TCGT-AAA-C-ATACTGAG-AATCCGT-ATTattagatttgcgtttgataa
gi|15 : AA-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCAGCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---agatttcgttgat
gi|16 : -CGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGC-ATTC-----CTTTTT-TTTCCG-ATAA-TGAAGCACAA-AAAG--GTTAG--GTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-
gi|17 : T-CAACACCAGCACC-CCGAAA-TTGA--GCCCA-----CC--CA-T-----------TTTCAGG-CATACCTTGAATT-CAATT-TA-AA-GTATACCA-AAAG-T
gi|18 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-C
gi|2 : atctaGTCGACT-GCCC-TAT-TCTCAGTGA--TGACCTAA-TCGGT-GACCTTTG--TT-AC---G--T---GTG-TGCTAGGCTG-TTCTT-C-GC-G--GTTG-A-C-TAC--GTTCATCTCTTTTTACGCATAGTG--TTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTT----TTCCGAATAA-TGAAGCTCAA-AG---CGTTAAGCTTTGCAAG-CTAT-CAA-ACCAGCACC-CCGAAATTTGA--TCCCATTT-ACTTGCATTCACT------TTTT-AAG-CATA-CTTGAATC-TAATATTA-AA-GAGTACCC-AAAG-TCTGT-A---TGTCCTCATTA-CA-TCAGTATGAAAAA-A--CGTCCGTTATACA---A--A--------------T--------------ATGACG----------TC----CTGCTC-TCA-G---TTACCC--TGT-ACGGTCA---CCTGATGTGTAA---A--GTCACCGGAAATTGGTGACGTC-ACATTTCAGAGT-C-CA--CTGAC-A-T----GGATTTTCA-TTACGACGATATATTTCACATA--------AGGGATTA--------A---TA-----G--------ACTTGGCCCAGTTTTTT--GGAT------GGAATTAAAGGAAATTTATTTGCT-TTATAAGTAGGTACGATTAT--TTATTTATTTCATCCCAA-GTAAATTAATGTG-GAAAT-CCACTGTTTACCAC-TAAGGTCA-AG-AAAAGCTGG-TCACTCGGACGA
gi|3 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAT--G-CTATCTTCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-C-TACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCA-TA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTGT--TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTA-CACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|4 : CGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAT--G-T-ATCTC-TTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGGAAGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA--GAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATACCA-AAAG-TCTGTAA---TGT-C-CA-TA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AA-TTAGTTGCT-TTATTAGTAGGTAC-ATTG---TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGA
gi|5 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--TTC-GG-GT-GTTG-A-C-TAT--G-TCATCTC-TTTTAC-CGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTTTCTTCCG-ATAA-TGAAGCACAA-A--GCCGTTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA--AACTCAAAACTTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATAC-A-AAAG-TCTGTAA---TGT-CTCAT-A-CA-TCAGTATG--AAA-AAACGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TCCACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGACAA-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGT
gi|6 : GACT-GTCC-TAT-T-TCGGTGA-CTGACCTAAATCGAT-GACCTGTTGTTT-TC---GCTT---GCG-CTTT--GTTG-TT--T-CCGG-GT-GTTG-A-C-TAC--G-TCATCGC-TTTTGC-CGTAGTGCTT-GT-AAA-T-ATACTGGG-AGTTCGT-CTTCAA--------------------A-TGAAGTACGAGAA-G--GTAAA--TTTGCAGA-CTAA-AAACACCACCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---TTT-TTC----------------------A--C------TATATC---ATC----------------------------------------------------TTG-TC-AT-TG--------TG-TGA-AC-GTCA---CCTG-TATTTAATTTAAGGTCACC-GAAATAGGTGACGTCAATATTTTT-AGTATGCAATCTGAC-A-G----GTGTTTTAA-TTACGACGATATA-TTCA---A--------A-----TACTGGATTAA---TA-----G--------A-TTGG--TAT-TTTTT--GGAT------GGGAACAAAGG-AATGTAGTTGCT-TTATAGATAGAT-C--TTATAATTA-TTA-TTAAT-CCAATGT-AATTGATGCG-AAA---TCGCT
gi|7 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGCTG-TT--T-TTGG-GT-GTTG-A-C-TAC--A-TCATCTC-TTTTAC-TGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-C---CG-ATAA-TGAAGCACAA-A--GCGGTTAG--TTTGCAAG-CTAT-GAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-GCT--CA-TCACT------TTTTTAGG-CATACCTTGAATT-CAATA-TG-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACT---ATCATGTAGGTCTGCTCTT--------------AT--------------TA----TTT-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TA
gi|8 : ataGTCGATT-GCCC-TGTCT-TCGGTGAACTGACCTAA-TCGGTTGACCTTTGTTTTTAC---G--CTGCGCG-TT----GTTG-TT--T-CCGG-GTTGTTG-AGCGTTC--G-TCATCACTTTCGGC-CGTAGTGCTGTGT-CAATC-ATACAGGG-AACCGGT-CTTCAATGCTTTTTT---TCCA-AAAA-TGAAGCACAA-AG-GTAA--AG--TTTGCAAAACTAT-CAACACCAGCACCTCCAAAA-TTAA--GCCC-TTT-ACT--TA-TTACT------TTTTCTGA-CATACCTTCAATTATAATA-TAGAA-GTATATC--AAAG-TGTATAA---TTT-CTCACTA-TA-TCAATATG--GAACA--CTTCCGTTAAACGTCTGTC---------------T--------------AT--------------TAATATTTG-TC-ACGTGACTATATGTG-TGT-AC-GTCA---
gi|9 : tccg-GTCAAACCCTG-TATTAAA---AAGATCACC-GAAATAGGTGACGTCAACATTTTGGAGT-A-CCATCTGAC-A-T----GTGTTTTTA-TTACGATGATAAA-TTCA---AAATACTGGA-----TA--------A---CA-----G--------A-TTGG--TA--TTTTT--TGATGGGAAAGGGAACAAAGG--ATTTAGTTGTG-TTACAGGTAGGTAC-ATTAT--TTATTTATTTAAT-CCAA-GT-AATTAATGTGAAAA---CCGCTGTTTATCACT--AAGTCACCG-AAA---TGG-TCACTC-GACG
blockSeqs : . . C C A A T T T CGC CA TGC C A . CT TC A TT G G G CG T C C G TTT A T G A . TTCTT A . G AGCG GC A . T T . . TG TTC CAAAAC C . A T G T . . . C T . . AA C AA T TCT ATGTACATCTGCTCTTCTTA C C ACT . . G AAC A TTT G A G A . GTAC . T AAATAATGGATTAATAA C CC T . GGGAAA A . G AA T C T A T A AT C TT . AG . G
blockSeqs : . . . . . A . T . . CT . C T . . CC . T . . . . . C C . TTT . . . . . TTTT . . G AGCC . . . . . . . . TG . C . . . . T . . . . T . . . . . T . ATGTACGTCTGCTCTCATTA . . . . . . . . . . . . . . . . . ACATAAGGGATTAATAG . . . . . . . . . T . . . A . . C TT . . . .
blockSeqs : . . . . . A . T . . . . . T . . TT . A . . . . . C C . TGT . . . . . TCTT . . . AGCC . . . . . . . . AA . T . . . . . . . . . T . . . . . . . ATGTAGGTCTGCTCTTATTA . . . . . . . . . . . . . . . . . AAATACTGGATTAATAG . . . . . . . . . T . . . A . . T T . . . .
blockSeqs : . . . . . A . G . . . . . A . . CC . A . . . . . T T . TT . . . . . TCTT . . . GGTA . . . . . . . . AA . T . . . . . . . . . T . . . . . . . ATATGACGTC . . . . . . . . . . . . . . . . . AAAATACTGGATAACAG . . . . . . . . . T . . . C . . . T . . . .
blockSeqs : . . . . . A . A . . . . . A . . T . T . . . . . T C . TC . . . . . TCT . . . AAG . . . . . . . . TG . T . . . . . . . . . C . . . . . . . TATTAATAT . . . . . . . . . . . . . . . . . AAATAATAG . . . . . . . . . . . . . T . .
blockSeqs : . . . . . A . A . . . . . A . . G . T . . . . . T T . TC . . . . . TT . . . GCC . . . . . . . . TC . C . . . . . . . . . . . . . . . . . ATATTA . . . . . . . . . . . . . . . . . AATAATAG . . . . . . .
blockSeqs : . . . . . . . A . . . . . A . . G . T . . . . . T . . TT . . . . . TC . . . GCG . . . . . . . . TT . T . . . . . . . . . . . . . . . . . ATATT . . . . . . . . . . . . . . . . . AATAATAG . . . . . . .
blockSeqs : . . . . . . . T . . . . . A . . C . T . . . . . G . . TT . . . . . TT . . . AG . . . . . . . . T . C . . . . . . . . . . . . . . . . . ATATT . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . C . T . . . . . T . . TT . . . . . . . . . GC . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . C . . . . . . . A . . TT . . . . . . . AG . . . . . . .
blockSeqs : . . . . . . TT . . . . . . . .
blockSeqCons : TT* AGC** ** *** ** ***
originalCons : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTTTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AA-GCCGTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
finalCons : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-TT--T-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGCTT-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAA-AAGC--GTTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
Alignments
lowQualScore : 11 111 11111 1 111 111111 9999999999999999999999999999999999999999999999999999 1111 3333333333333333333333333333333333333333333333333 111111 1 1 222 11 11
lowQualScore : 3 3 3 3 3 4 3 1 3 666 00 666 7 2 3 55 222 3 33 3 3 3 55 7 00 6 3 3 3 3 3 3 3 6 3 00000 4 3 1 999 3 0 55 3 3 0 3 3 55 4 55 000 111111 3 4 4 4 4 8 4 4 777 4 55 4 4 66 4 66 8 777 5555555555555555555555555555555555555555555555555555 4 4 777 4 4 3 666 4 777 4 4 4 4 4 0000 5 5 0000000000000000000000000000000000000000000000000 5 66 5 66 444444 0 5 0 6 99 7 6 6 3 1 6 000 0 3 11 8 11 8 8
lowQualScore : . . . . . . . . . ... .. ... . . . .. ... . .. . . . .. . .. . . . . . . . . . . ..... . . . ... . . .. . . . . . .. . .. ... ...... . . . . . . . . ... . .. . . .. . .. . ... .................................................... . . ... . . . ... . ... . . . . . .... . . ................................................. . .. . .. ...... . . . . .. . . . . . . ... . . .. . .. . .
lowQualScore : 3 3 3 3 3 3 6 0 6 444 00 444 3 4 6 00 000 6 88 6 6 6 00 3 99 5 3 3 3 3 3 3 3 7 3 22222 0 6 5 222 6 2 00 6 3 4 3 3 55 0 55 000 555555 0 0 0 0 0 0 0 0 888 4 33 4 4 11 4 11 0 000 5555555555555555555555555555555555555555555555555555 0 0 000 0 0 6 444 0 888 4 4 4 4 4 6666 0 0 9999999999999999999999999999999999999999999999999 0 99 0 99 444444 0 0 8 7 22 3 7 7 3 0 7 888 7 2 44 0 00 0 0
consensus : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-T--TT-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACGAAAG-C-G-TTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
Reference ( family-6645 ) : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTNGTTT-AC---G--T---GTG-TTCTAGGTTG-T--TT-C-GG-GT-GTTG-A-C-TAC--G-TCATCCCCTTTTAC-CGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAAAAG-C-G-TTAG--TTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-TNACT------TTTTCAGG-CATACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTAT--TTATTTATTTCAT-CCAA-GT-AATTAATGNG-GAA---TCGCTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|1 : GTCGACTTGCCCCTAT-T-TCAGTGA-CT-ACCTAAATCGGT-GACCTTTACTTT-AC---G--T---GTG-TTCGAGGCTGTT--TT-C-GG-GT-GTTG-A-C-TAC--ATTCATTCTCTTTTA--CATAGTGC---T-GT-AAA-C-ATACTGGGCAGTCCGTGATTTCATATTTTTT---TTTCG-ATAATTGAAGCAC-AAAG-C-G-TTAG--TTTGCAAG-CTATGAAACAGCAGCACC-CCAAAT-TTGAGGGCCCATTTGACT--CA-TCACT------TTTTTAGGTCATACCTTGAATT-CAATA-TA-AA-GTATACCAGAAAGTTCTGTAAATTTGT-CTCATTACCATTCAGTATG--AAA-A--TGTCC--TATTAA---ATCA--------------T--------------GCTAGGTCTGCTCTTATA----TTT-TC-ACATG---ATACCTGTTGTAAC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAATAAGGTGACGTCAACATTTTCGAGT-T-CAATCTGAC-AGT----GTGTTTTCATTTACGACGATATA-TTCA---A--------A-----TA--------AGATTACATAGG--------A-TTGG--CAG-TTTTTTGGAAT------GGGAATAAAGGAAATTCAGGTGCTATTATTAGTAGG-AC-ATTAT--TTA-TTATTTCAT-CCAA-GTAAATTAATGAG-GAAAATTCACTGTTTACCAC-TAAGGTCACCGAAAA--CTGGTTCACTC-GACGAT
gi|10 : tGTCCG-TATACA---ATCA--------------T--------------GTACATCTGCTCTTCTTA----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGTCAACATTTCCGAGT-T-C-ATCTGAC-A-TGTACGTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TG-----GATTAATAAA-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTA
gi|11 : CGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTTAATCATT-GACCTTTTGTTT-AT---G--T---GTG-TGCTAGGCTG-T--TT-T-GGAGT-GTTG-A-C-TGC--G-TCAT-CTCTTTTAC-CGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAACATTTTTTT-CT---G-ATAA-TGAAGCAC-AAAG-C-GATTAG--TTTACAAG-CTAT-CAACACCAGCACC-CCGAAA-TTG
gi|12 : T-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATCCA---ATCA--------------TGTACGTCTGCTCTCAT--------------TA----TTG-TC-ACATG---ATACCTG-TGT-TC-GTCA---CCTC-TATTTAA---AAGGTCACC-GAAATAGGTAACGTCAACATTTCCGAGT-T-CAATCTGAC-A-
gi|13 : TCGTCGACT-GCCC-TAA-T-T-----------------TCGAT-GAC---TTGTTT-ACCGCA--T---GTGCTTTTTGGTT--T--TT-G-GG-GA-GTTGGA-C-TACCGG-TTA-CCCCTTTTGC-CGTAGTGC-T-C-GTAAAA-CGATACTGGA-AATCCGT-A
gi|14 : TCGTCGACT-GCCC-TAT-T-TC------------------GAT-GACCTTTTGTTT-AC---GCAT---GTGCTTTTTGGTTT-T--TG-G-GG-GA-GTTG-A-C-TAC--G-TTA-CCCCTTTTGC-CGTAGTGC-T-C-GT-AAA-C-ATACTGAG-AATCCGT-ATTattagatttgcgtttgataa
gi|15 : AA-TGAAGTACGAGAA-G-G-TAAA--TTTGCAGA-CTAA-AAACACCAGCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---agatttcgttgat
gi|16 : -CGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGC-ATTC-----CTTTTT-TTTCCG-ATAA-TGAAGCACAAAAA-G-G-TTAG--GTTGCAAG-CTAT-CAACACCAGCACC-CCGAAA-
gi|17 : T-CAACACCAGCACC-CCGAAA-TTGA--GCCCA-----CC--CA-T-----------TTTCAGG-CATACCTTGAATT-CAATT-TA-AA-GTATACCA-AAAG-T
gi|18 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-C
gi|2 : atctaGTCGACT-GCCC-TAT-TCTCAGTGA--TGACCTAA-TCGGT-GACCTTTG--TT-AC---G--T---GTG-TGCTAGGCTG-TTCTT-C-GC-G--GTTG-A-C-TAC--GTTCATCTCTTTTTACGCATAGTG--T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTT----TTCCGAATAA-TGAAGCTC-AAAG-C-G-TTAAGCTTTGCAAG-CTAT-CAA-ACCAGCACC-CCGAAATTTGA--TCCCATTT-ACTTGCATTCACT------TTTT-AAG-CATA-CTTGAATC-TAATATTA-AA-GAGTACCC-AAAG-TCTGT-A---TGTCCTCATTA-CA-TCAGTATGAAAAA-A--CGTCCGTTATACA---A--A--------------T--------------ATGACG----------TC----CTGCTC-TCA-G---TTACCC--TGT-ACGGTCA---CCTGATGTGTAA---A--GTCACCGGAAATTGGTGACGTC-ACATTTCAGAGT-C-CA--CTGAC-A-T----GGATTTTCA-TTACGACGATATATTTCACATA--------AGGGATTA--------A---TA-----G--------ACTTGGCCCAGTTTTTT--GGAT------GGAATTAAAGGAAATTTATTTGCT-TTATAAGTAGGTACGATTAT--TTATTTATTTCATCCCAA-GTAAATTAATGTG-GAAAT-CCACTGTTTACCAC-TAAGGTCA-AG-AAAAGCTGG-TCACTCGGACGA
gi|3 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-T--TT-C-GG-GT-GTTG-A-C-TAT--G-CTATCTTCTTTTAC-CGTAGTGC-T-TTGT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA-TGAAGCACAAAAG-CCG-TTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-C-TACCTTGAATT-CAATA-TA-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCAT-A-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTCA---A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGTAGGTAC-ATTGT--TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTA-CACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGAT
gi|4 : CGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-T--TT-C-GG-GT-GTTG-A-C-TAT--G-T-AT-CTCTTTTAC-CGTAGTGCTT-T-GT-AAA-C-ATACTGGGAAGTTCGT-ATTCAATATTTTTTT-CTTCCG-ATAA--GAAGCACAAAAGCC-G-TTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA-AAACT------TTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATACCA-AAAG-TCTGTAA---TGT-C-CA-TA-CA-TCAGTATG--AAA-A--CGTCCG-TATACA---ATCA--------------T--------------AT--------------T-----TTG-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGAC-A-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AA-TTAGTTGCT-TTATTAGTAGGTAC-ATTG---TTATTTATTTCAT-CCAA-GT-AATTAATGAG-GAA---TCACTGTTTACCACTTAAGGTCACCG-AAA--CTGG-TCACTC-GACGA
gi|5 : TCGTCGACT-GCCT-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGTTG-T--TTTC-GG-GT-GTTG-A-C-TAT--G-TCATCTC-TTTTAC-CGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTTTCTTCCG-ATAA-TGAAGCACAAAGC-C-G-TTAG--TTTGCAAG-CTAT-CAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-ACT--CA--AACTCAAAACTTTTTAGG-CATACCTTGAATT-CAATA-TA-AATGTATAC-A-AAAG-TCTGTAA---TGT-CTCAT-A-CA-TCAGTATG--AAA-AAACGTCCG-TATACA---ATCA--------------T--------------AT--------------TA----TTG-TCCACATG---ATACCTG-TGT-AC-GTCA---CCTG-TATTTAA---AAGGTCACC-GAAATAGGTGACGACAACATTTCCGAGT-T-CAATCTGACAA-T----GTGTTTTCA-TTACGACGATATA-TTC----A--------A-----TA--------A---TA-----G--------A-TTGG--CAG-TTTTT--GGAT------GGGAATAAAGG-AATTTAGTTGCT-TTATTAGT
gi|6 : GACT-GTCC-TAT-T-TCGGTGA-CTGACCTAAATCGAT-GACCTGTTGTTT-TC---GCTT---GCG-CTTT--GTTG-T--TT-CCGG-GT-GTTG-A-C-TAC--G-TCATCGC-TTTTGC-CGTAGTGC-T-T-GT-AAA-T-ATACTGGG-AGTTCGT-CTTCAA--------------------A-TGAAGTACGAGAA-G-G-TAAA--TTTGCAGA-CTAA-AAACACCACCACC-CCGAAA-TTAA--GCCCACTT-GCT--TA-TGACT------TTTTCAGG-CATACCTTTAATT-TGATA-TA-AA-GTATACCA-AAAG-TCTATAA---TTT-TTC----------------------A--C------TATATC---ATC----------------------------------------------------TTG-TC-AT-TG--------TG-TGA-AC-GTCA---CCTG-TATTTAATTTAAGGTCACC-GAAATAGGTGACGTCAATATTTTT-AGTATGCAATCTGAC-A-G----GTGTTTTAA-TTACGACGATATA-TTCA---A--------A-----TACTGGATTAA---TA-----G--------A-TTGG--TAT-TTTTT--GGAT------GGGAACAAAGG-AATGTAGTTGCT-TTATAGATAGAT-C--TTATAATTA-TTA-TTAAT-CCAATGT-AATTGATGCG-AAA---TCGCT
gi|7 : TCGTCGACT-GCCC-TAT-T-TCAGTGA-CTGACCTAAATCGGT-GACCTTTAGTTT-AC---G--T---GTG-TTCTAGGCTG-T--TT-TTGG-GT-GTTG-A-C-TAC--A-TCATCTC-TTTTAC-TGTAGTGC-T-T-GT-AAA-C-ATACTGGG-AGTTCGT-ATTCAATATTTTTTT-C---CG-ATAA-TGAAGCAC-AAAG-CGG-TTAG--TTTGCAAG-CTAT-GAACAGCAGCACC-CCGAAA-TTGA--GCCCATTT-GCT--CA-TCACT------TTTTTAGG-CATACCTTGAATT-CAATA-TG-AA-GTATACCA-AAAG-TCTGTAA---TGT-CTCATTA-CA-TCAGTATG--AAA-A--CGTCCG-TATACT---ATCATGTAGGTCTGCTCTT--------------AT--------------TA----TTT-TC-ACATG---ATACCTG-TGT-AC-GTCA---CCTG-TA
gi|8 : ataGTCGATT-GCCC-TGTCT-TCGGTGAACTGACCTAA-TCGGTTGACCTTTGTTTTTAC---G--CTGCGCG-TT----GTTG-T--TT-CCGG-GTTGTTG-AGCGTTC--G-TCATCACTTTCGGC-CGTAGTGC-TGT-GT-CAATC-ATACAGGG-AACCGGT-CTTCAATGCTTTTTT---TCCA-AAAA-TGAAGCACAAAGG-T-A-A-AG--TTTGCAAAACTAT-CAACACCAGCACCTCCAAAA-TTAA--GCCC-TTT-ACT--TA-TTACT------TTTTCTGA-CATACCTTCAATTATAATA-TAGAA-GTATATC--AAAG-TGTATAA---TTT-CTCACTA-TA-TCAATATG--GAACA--CTTCCGTTAAACGTCTGTC---------------T--------------AT--------------TAATATTTG-TC-ACGTGACTATATGTG-TGT-AC-GTCA---
gi|9 : tccg-GTCAAACCCTG-TATTAAA---AAGATCACC-GAAATAGGTGACGTCAACATTTTGGAGT-A-CCATCTGAC-A-T----GTGTTTTTA-TTACGATGATAAA-TTCA---AAATACTGGA-----TA--------A---CA-----G--------A-TTGG--TA--TTTTT--TGATGGGAAAGGGAACAAAGG--ATTTAGTTGTG-TTACAGGTAGGTAC-ATTAT--TTATTTATTTAAT-CCAA-GT-AATTAATGTGAAAA---CCGCTGTTTATCACT--AAGTCACCG-AAA---TGG-TCACTC-GACG