lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 444444 1 777777777777777777777777777 3 222222 6666666666666666666666666666666666 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 222222222222222222 11111 1 3 111 111 2222222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 111 3333333333333333333 2 11
lowQualScore : 0 444444 3 0 2 3 5 222222222222222222222222222 6 4 0 555555 9999999999999999999999999999999999 5 2 3 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 444 888888888888888888 6 33333 2 0 66 0 6 6 111 888 666 8 3333333333 0 0 8 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 8 4 0 4 7 888 66 4 4 1111111111111111111 1 8888 9 4 8 22 4 4 6 3
lowQualScore : . ...... . . . . . ........................... . . . ...... .................................. . . . . ................................................................................................................. ... .................. . ..... . . .. . . . ... ... ... . .......... . . . . ....................................................................................................................................................................................................... . . . . . . ... .. . . ................... . .... . . . .. . . . .
lowQualScore : 7 888888 2 0 2 2 7 666666666666666666666666666 0 4 6 666666 2222222222222222222222222222222222 6 8 4 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 666666666666666666 4 77777 5 0 88 0 7 7 777 333 888 3 4444444444 8 8 0 8 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 9 4 2 0 1 000 11 4 4 1111111111111111111 4 5555 7 0 0 22 4 4 0 9
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAAC-TC--G--A-TCAGT--AGTAA--AGACATCTTGTGTTTGATTAATTATT-TTTCGAA------TAAC-AGA----GACTGGAAT--T-TAACAA-------GCACTCC-AATACAAAATA-GAC-CGAG-ATC------TTAC--ACACT---TTCCTACT-G-AA-TGT--TT--AAATAGC------CCCG--------------AGAGAAG---------------T---T--ATTTTTG---TC------TTC--CTTTCCCCTCCAATTCNC--TGCCCCTCTGCT-CGCT-AA-CA---TCTC---T-GTCATAGAT--A--A-A-TTACAAGGTTTTTGT-AAAACAC-TA--GTA-CAG-A--GAAAATNT----ATA--CAACA-T-TA--C--ACCAA-CT-------TAG---C-T-TAA--TCAATTTGATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A----C-CGC---TG--TGAA-CAAA-TTNC-------TAC--ATTTTTGATTT-T-AATTN--CG-ATTAAAT-T-TCT-CCGGGT-TTCANGAT-TTGTAA--TA-CA-TGT----AA-T----TCTTTAAATTTCTC----ATCGG-TT-TTCTTT--TCC-ACGTTTTA-GTAACACTACT
Reference ( gi|1 ) : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAAT-TC--A--A-TCAG---AGTAA--AAACA-CTTGTGCTTGATTAATTATTGTTTTAAA------TAACAAGG----GACTGGAAT--T-TGACAA-------GCACTTCAAATACAAAATA-GAC-CAAG-ATCAAG-AGTTGA--ACATT---TCCCCACC-G-AA-TGT--TT--AAATAAC------CCCG--------------A---------------------T---T--ATTTTTG---TC------TCC--CCTCGCATTCCAATTCAC--TGCCCCTTTGCTGCGCT-AA-CA---TCTC---T-GCCAAAGAT--G--A-A-TTACAAAGTTTTTGT-AAAACACCTT--GTA-CAG-A--GAAAATAT----ATAACCAACATTCTA--CATACCAA-CT-------TAG---C-T-TAA--TCAATTTAATG----TGACAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A----C-CA----TG--TGAA-CAAA-TTCC-------CAC-TATTTTTGATTTTTAAACTA--CG-ATTAAAT-T-TCT-CCGGTT-TTCATGAT-TTATAA--TA-CA-TGT----AT-T----TTTTTAGATTTCTC----ATCGGATT-TTATTT--TCC-ACGTTTTA-GTAATATTACT
gi|9 : TATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAAC-TCGTG--A-TCTT---ATTCA--AGAT--CTTGTATTTGATTAATCATT-TTTCAAATACATGTAAC-AGA----GACT-GAATG-T-TAAC-T-------GCACTCC-AATACAAAATA-GAC-
gi|8 : aaTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AAC-TC--GTGA-TCTT---A-TCA--AGAT--CTTGTATTTGATTAATCATTTTTCCAAATACATGTAAC-AGA----GACT-GAATG-T-TAAC-T-------GCACTCC-AATACAAAATA-GAC---------------------AC------TTCCTACT-G-AA-TG---TT--AAATAAC------CCacttcctactgaatgttaaata
gi|26 : aTACGGTCATACAAG--AAGTGTAG-CATGTAAATGTAACAATAAC-TT--G--A-Tgaaaag
gi|24 : taGGCCATA-CAGCAA-GTGTGG-AATGTAAATATAAGGATGAaat
gi|4 : tagtgtACGGTCATCTT--A--T-TCAGGTCAGTAAGTAAACATCTTGTGTTTGATTAGCCATT-TTTTGAA------TAACAAAGACT-GACTG---T--T-T-ACAA--------CACTCC-AATACAAAATA-GA--AGAG-ATC------TTAC--ACACT---T-CCTACT-G-AA-TG---TC--AAATAAC------CCTG--------------AGAGAAG---------------G---C--GTCTGTG---TCGTATTTCCC--CCCCCCCCTTCAATTCTC--TG-CCCTCTGCT-CGCC-AA-CA---TCTCG--T-GTCATAGAT--G--ACA-TTACAAGGGTTTTGT-AAAACA-ATA--GTA-CAG-A--GAAAcgtgtgatcttattcga
gi|12 : TAAT-TC--A--AGTCAGTA-AGTAA--A--CATCTTGTGTTTGATTAATTATT-TTTT-AA------TAAC-AGA----GACTG--ATTGT-TAAT-A-------GCACTCC-AATACAAAATA-GAC-tcc
gi|7 : ggtcatcAT-TC--A--AGTCAGTA-AGTAA--T--CATCTTGTGTTTGATTAATTATT-TTTCAAA------TAAC-AGA----GACTGCA------TG-TAA-------GCACTCC-AATACAAAATA-GCA-CGAG-ATC------TTAA--A--------CTCTACTAG-AATTGT--TG--AAATAGC------TCCG--------------A---------------------gatatttaccacacttcttagt
gi|5 : cgtgatcttAT-TC--A--G-TAAGTC-AGTAAGTAAACATCTTTGGTTTGATGAATTATT-TTTTGAA------TAACTCTG----AATTGGTAT--C---A-AA-------GTACTCC-AATACAAAATATTAC-GAAGAATC-----TTTAC--ACACT---T-TTTACT-GTAA-TGT--TT--AAA-AAG------CCCG--------------AGAGAAGGGACATGTG------T---TCGATTTTTGTCTTC------TTC--TTTTTCCCTCCAATT-AT--ATACCCTCCGCT-CGCTAAA-CATTCTCTC---T-GTCATAGAT--GAAA-A-TTACAAgagaaggggccagtgtcgtatttttgtcttctttattttcccccttcatattttct
gi|17 : ggtcatcttTGTTTGATTATT-TTTTAAC------TAACA-GA----GAC-ATAAT--AATAACAG-------G-ACTCCAA-TACAAAATA-GA--CGAG-ATCt
gi|2 : gTAATT-TTTTTTAAAA------TAACCAGGACGTGATTGT--T--T-TAACA--------GCACTTCCAATACGAAATA-G------G-AACGAGTATTTGGCCACACT---TCTTTACT-G-AA-TGT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCA---------------------TGTGT--ATTTTTG---TC------TTCTTCTTTCCCCTTCAAGTTATCTTGCCTCTT-GCTGC--T-AAACA---TCTC---T-GTCATAGTTTGA--A-A-TTACAAAGTTTTTGT-AAA-CAC-TA--GGG-CAGTA--GAA--TTC----ATACGCAA------------ATCAAGCT-------TAG---CTT-TAA--TCAATTT-ATGC---TGTC-AAGAATTTCAAAAGATA-AA-AC-T-GTTTT-AAT--C-GC----TG--TGAA-CAAA-----------------ATTGTT-ATTCCT----T-------TTAAATAT-TCT-CCGGGT-TTCAGGATATGGTAA--T---A-TGT----A-------ATTCTAAATTTCTC-----TTGGTTT-TCTTTT--TCC-ACGTTTTA-GTAACATttcttccacacttcctac
gi|14 : taatacggtcattatctcaagtcagATT-TTTCAAG------TAACAGAG----G--TTGAAT--G-TTACAATGTCACAGCACTACAATT-CAGAATA-GAC-----------G-AG--------ATC---TTCCTACT-A-TA-AGTAATT--AAATAGC------CCCG--------------A---------------------cta
gi|15 : tgAGA----GACTG-AATG-T-TAACA--------GCACTCCAA-TAAAAAATA-GACGCA---ATC------TTGC--ACACTTAATTCCTACT-G-AA-TAT--TTTAAAATAGC------CCCG--------------A---------------------gagatcga
gi|13 : cACT-G-AA-TGT--T---AAATAGC------CCCG--------------AGAGAAGAGGCCTATAGCTGTGTCG-T--ATATTTG---TC------TTT--TTTCCCCTTC-AATTATC--TACCC-TCTGCT-CGCT-AA-CA---TCTC---T-GTCATAGAgagaaggggcctgtg
gi|29 : tt------CCCG--------------A---------------------T---T--ATTTTTG---TC------TCC--CCCTCCATT-CAATTCAC--TGCCC
gi|11 : CAATTCTC--TGCCC-TCTGGT-CGCT-A--CA---TCTC---TTGTCGAAAAT--A--A-AATCACAAGGCTTTGGT-AAAACAC-TA--GTA-CAA-A--GAAAAGTT----ATA-CCAATAT----------CCCA-CT-------TAG---C-T-TGA--TCAATTT-ATGT---TG----AGAATTT---AAGATA
gi|3 : tGCT-AA-CA---CCTCAATT-CTTAAACA---A--A-G-TTGT--AGTTTATGTAAAAACAGCTTAAGTAGCAA-AATGCAAATGT----A-----GACAATGTAGTTATACCAA-CCTCCAATGTAGTCTC-T-TAACCTCATATTAATGTCATTGAT-GATAATT----AAGATAGAATAT-TAGTTTTAA----C-CATGGCTG--TGAA-CGAA-TTCTTTTGAGGCACATA---TTGAATT---AATTATCCGAATTAGAT-TATCT-CGGGTTCTTCATGATATTATACCTTA-CA--GTGGTAAT-T----CTTTTAAATTTCTCAAAAATCGGGTT-TTCTTG--TCCTAC-CTTTA-GTAA
gi|6 : TTGT-AAAACAC-TA--GTAACAG-A--GA---TATTTTCATA--CAAC--TCTA--C--------TT-------TAG---C-TGTAA--CT--TTTGTTG----T-----AGAATTT---AAGATAAAA-AT-C-GTTTT-A----CACGC---TG--TGAAGCAAA-TCT------------TATATTTGATTTATAT-CCA---G-ATTATAT-T-TCTACCGGGT-TTCATGAT-TTATAA--TACCA-TGT----ACATATAATTCTTA-ATTTCTC----ATTGG-TT-TCATTTTCTCC-ACATTTTGTGTAAcctacta
gi|20 : AGAATTT-----AATA-AA-AT-T-GCTTT-AACCGC-TG----TGCATGAA-CAAA-TTGC-------TAC--AATTTTGATTTTc
gi|10 : cagctttattcaaattatgttgttGAATTT---AAGATAAAA-ATCT-GCTTT-A----C-CGC---TG--TGA--CAAC-TTGC-------TAC-AATTT--GATTT----ATTC--CA---TAAAT-T-TCT-CCGGGT-TT-AGGAT-T-GTAA--TA-CA-TGA----AA-T----TCT--AAATTTTTC----ATCGG-TT-TAATTT--TCC-ACGTTTTA-GTAACACTACTa
gi|22 : ttctcattatgttgtAGATA-AA-AT-T-GTTTT-A----C-CGC---TG--TGAA-AAAAATTCC-------TAC-AATTTT-GATTTT--AA-TC--CT-ATTAAAT-T-TCT-CCGGGT-TT
gi|19 : TAAAT-TCTCT-CCGGGT-TTCAGG---TTGTAA--TA-CC-TGT----AA-T----TCTT-AAATTTTTC----ATCGG-TT-TTCTTT--TCC-ACGTTTTA-GTAACACTACT
gi|18 : AAAT-T-CTT-CTGGGT-TTCATTAT---ATAA--TA-CA-TGT----AA-T----TCTG-AAATTTCTC----ATCGG-TT-TTCTTT--TCC-ACGTTTTA-GTAACACTACT
gi|16 : aAAAT-T-CTT-CCGGGT-TTCA-GGC-TTGTAA--TA-CACTGT----AA-T----TCTT-AAATTT-TC----ATCGGTTTATTCTTTCATCC-ACGTTTTA-GTAACACTACTa
gi|21 : taa-T-TCT-CCGGGT-TTCAGGAT-T-GTAA--TA-CC-TGT----AA-T----TCTT-AAATTTTTC----ATCGG-TT-TTCTTT--TCC-ACGTTTTA-GTAACACTACT
gi|25 : aaGTT-TTGATGAT-T-ATAA--TA-CA-TGC----AA-T----TCTT-AAATTTCTC----ATCGGTTT-TCATT
gi|27 : aTTCTAAATTTTTC----ATCGG--T-TTCTTT--TTC-ACGTTTTA-GTAACACTAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): AATTCGTGATCTCACTCACTCAGTAAGTTTTACATCTTGTGTTTGATTTATTATTCTTGAACAACAGA
Unaligned ( gi|28 ): TTTTCTGCCCTCTGCTCGCTGACACCTGTCAAAGCTGAAATTACAA
Alignments
lowQualScore : 1111111 444444444444 2222222 444444444444444444444444 4444444444444444444444444444444444 111 111111 9999999999999999999999999999999 1111 3333333333 1 11 22 1 1 5555555555555555555 2222222 111 2 22222222 222 11 1 111 1111 2222222222 11111111 111 111 1111111 22 11
lowQualScore : 8 8 8 3 3333333 3 000000000000 3 99 2222222 3 3 777777777777777777777777 3 3 3333333333333333333333333333333333 3 4 4 4 111 777 111111 2 4 3333333333333333333333333333333 2222 1111111111 3 66 5 4 22 4 2 1 5 5 5 888 11 5 0 11 5 1 1 6 777 99 3 6 99 3 1 8 0000000000000000000 0 8 1111111 111 6 6 9999 8 33333333 66 000 00 5 5 5 1 5 000 7777 5 66 1111111111 2 1 1 66666666 1 111 4 8 4 55 1 0 444 8888888 7 3 3 66 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... . ............ . .. ....... . . ........................ . . .................................. . . . . ... ... ...... . . ............................... .... .......... . .. . . .. . . . . . . ... .. . . .. . . . . ... .. . . .. . . . ................... . . ....... ... . . .... . ........ .. ... .. . . . . . ... .... . .. .......... . . . ........ . ... . . . .. . . ... ....... . . . .. . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 2 444444444444 6 66 3333333 3 6 333333333333333333333333 6 6 0000000000000000000000000000000000 7 0 0 0 222 999 555555 9 4 3333333333333333333333333333333 1111 3333333333 0 99 0 4 99 4 5 4 7 0 0 888 99 0 8 44 7 4 4 7 555 22 3 7 22 2 0 0 6666666666666666666 6 0 7777777 777 7 7 3333 7 33333333 44 000 77 7 7 7 4 7 000 9999 7 44 6666666666 1 4 4 44444444 0 222 0 0 0 00 0 8 444 5555555 3 6 6 44 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAAAG----ACATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATG--T--TAACAA-------GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCT-AA-CA---TCTC--T-GTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA--CAACGT---T----ATACCAA-CTT-------AG---C-T-TAA--T-CAATTT-ATGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-------AC-ANTTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTAATTC-TT-AAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTA-GTAAAG----ACATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAAT---T--TAACAA-------GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CT---TTCCCCTC--CA-A-TTCNCT-GCCCCTCTGCT-CGCT-AA-CA---TCTC--T-GTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATNT-ATA--CAACAT---T----ACACCAA-CTT-------AG---C-T-TAA--T-CAATTTGATGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTNCT-------AC-ATTTTTGATTTT--AAT--TNCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTAATTC-TTTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TCAG-A-GTAAAA----ACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT---T--TGACAA-------GCACT-TCAAATACAAAATAG-ACCAAG-A---TCAAGAGTT-G-A-ACATT---TCCCCACC-G-AAT-GT--TT--AAAT------AACCCCG-A------------------------------T--T--ATTTTTGTC----TCC-----CC---TCGCATTC--CA-A-TTCACT-GCCCCTTTGCTGCGCT-AA-CA---TCTC--T-GCCAAAGAT--GA-A-TTACAAAGTTTTTGTAAAA-CA-CCT--TGTA-CAG-A--GAAAATAT-ATAACCAACAT---TCTACATACCAA-CTT-------AG---C-T-TAA--T-CAATTTAATGT---GA-CAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAATTCCC-------ACTATTTTTGATTTTTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTT-TTTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : ATGT---TG-TGA---ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAACTTGCT-------AC-AATTT-GATTT----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAAATTC-T--AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctcatt--CA-A-TTCTCT-GCCC-TCTGGT-CGCT-A--CA---TCTC--TTGTCGAAAAT--AA-AATCACAAGGCTTTGGTAAAA-CA-C-T--AGTA-CAA-A--GAAAAGTT-ATAC-CAATAT-----------CCCA-CTT-------AG---C-T-TGA--T-CAATTT-ATGT---T---GA-GAATTT---AAGATA
gi|12 : tTAATTC--A--AGTCAGTAAGTAAA------CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-TG--ATTG-T--TAAT-A-------GCACT-CCAA-TACAAAATAG-A-CGAT-A---T------TT-ACC-ACACT---T
gi|13 : ggtcatcTACT-G-AAT-GT--T---AAAT------AGCCCCG-AGAGAA---------GAGGCCTATAGCTGTGTCGT--ATATTTGTC----TTT------T---TTCCCCTT--CA-A-TTATCT-ACCC-TCTGCT-CGCT-AA-CA---TCTC--T-GTCATAGActtagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AAT---G--TTACAATGTCACAGCACT-ACAA-TTCAGAATAG-AC-GAG-A---TC-----TT---------------CCTACT-A-TAA-GTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AATG--T--TAACA--------GCACT-CCAA-TAAAAAATAG-A-CGCA-A---TC-----TT-G-C-ACACTTAATTCCTACT-G-AAT-AT--TTTAAAAT------AGCCCCG-AGAGAA---------G---------------tcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTAATTC-TT-AAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTgggcctgtg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGACAT--AAT---AA-TAACAG-------G-ACT-CCAA-TACAAAATAG-A-CGAG-ATCTTC-----TT-C-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTAATTC-TG-AAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTAATTC-TT-AAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGAC-GTGATTGTTT--TAACA--------GCACTTCCAA-TACGAAATAGGAACGAGTA---TT-----TG-G-CCACACT---TCTTTACT-G-AAT-GT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCATG---------------TG-T--ATTTTTGTC----TTCTT---CT---TTCCCCTT--CA-AGTTATCTTGCCTCT-TGCT--GCT-AAACA---TCTC--T-GTCATAGTTTGAA-A-TTACAAAGTTTTTGT-AAA-CA-C-T--AGGG-CAGTA--G--AATTC-ATA--CG-------C----AAATCAAGCTT-------AG---CTT-TAA--T-CAATTT-ATGC---TGTCAA-GAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA---------------ATTGTT---------AT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTAATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCAAATT-ATGT---TG-TTA-GAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAATTGCT-------AC-AATTTTGATTTT--A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTAATTC-TT-AAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTGA---AA-AAAATTCCT-------AC-AATTTTGATTTT--AA---TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TCAGTA-----AGTTTTACATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCAATTC-TT-AAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTAATTC-T--AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCT-GA-CA-----CC--T-GTCAAAGCTG-AA-A-TTACAA
gi|29 : ---------------T--T--ATTTTTGTC----TCC-----CC---CT-CCATT--CA-A-TTCACT-GCCC
gi|3 : cccgaGCT-AA-CA---CCTCAAT--TCTTAAAC--AA-AGTTGTA--GTTTATGTAAAAACAGC-TTAAGTAGCAA-AATGCAAATGT-AGA--CAATGTAGTT----ATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTAATGTCATTGATGA-TAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAATTCTTTTGAGGCAC-ATATTGAA--TT--AATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTAATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TCAGTAAGTAAA------CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-T-GACTG--T--TTACAA--------CACT-CCAA-TACAAAATAG-A-AGAG-A---TC-----TT-A-C-ACAC----TTCCTACT-G-AAT-G---TC--AAAT------AACCCTG-AGAGAA---------G---------------G--C--GTCTGTGTCGTATTTC-----CC---CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCC-AA-CA---TCTCG-T-GTCATAGAT--GACA-TTACAAGGGTTTTGTAAAA-CA-A-T--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TCAGTAAGTAAA------CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAACT-----C-TG-AAT---TGGTATCAAA------GTACT-CCAA-TACAAAATATTACGAAG-AA--TC-----TTTA-C-ACACT---TTT-TACT-GTAAT-GT--TT--AAAA------AGCCC-G-AGAGAA---------GGGACATGTG------T--TCGATTTTTGTC----TTC-----TTCTTTTTCCCTC--CA-A-TTATAT-A-CCCTCCGCT-CGCTAAA-CATTCTCTC--T-GTCATAGATGAAA-A-TTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-C-T--AGTAACAG-A--GATATTTTCATA--CAACTC---T----AC------TTT-------AG---C-TGTAA--C----TTT--TGT---TG-T-A-GAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAAT--CT--------T-ATATTTGATTTA--TAT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATAATTC-TT--AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TCAGTAAGTAAT------CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TGCA-T---G--TAA----------GCACT-CCAA-TACAAAATAG-CACGAG-A---TC-----TT-A-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAA---------GGGGCCAGTG------TCGT--ATTTTTGTC----TTCTTTATTT---TCCCCCTT--CATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TC--TT-ATCAAG----A--TCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AATG--T--TAACT--------GCACT-CCAA-TACAAAATAG-AC-------------------------ACT---T-CCTACT-G-AAT-G---TT--AAAT------AACCC----GAAAA---------G---------------
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC-TTA-TTCAAG------ATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-T-GAATG--T--TAAC-T-------GCACT-CCAA-TACAAAATAG-AC-------------------A-C---------TTCCTACT-G-AAT-G---TT--AAAT------A
Alignments
lowQualScore : 1111111 222 2222222 22 222222222222222 4444444444444444444444444444444444 111 111111 9999999999999999999999999999999 1111 2222222222 1 1 11 22 1 5555555555555555 2222222 111 22222222 222 11 1 111 1111 222222222222 11111111 111 111 1111111 11
lowQualScore : 8 8 8 3 3333333 3 0 999 3 99 2222222 3 3 00 4 111111111111111 3 3 3333333333333333333333333333333333 3 4 4 4 111 777 111111 2 4 3333333333333333333333333333333 2222 8888888888 66 5 4 1 4 2 1 5 0 888 66 0 77 5 5 1 6 777 99 3 6 99 3 1 8 5555555555555555 0 999 1111111 111 6 6 9999 6 5 33333333 66 000 00 5 5 5 1 5 000 7777 5 5 0 333333333333 1 33333333 111 4 8 4 55 1 0 444 8888888 7 3 3 55 2 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... . . ... . .. ....... . . .. . ............... . . .................................. . . . . ... ... ...... . . ............................... .... .......... .. . . . . . . . . ... .. . .. . . . . ... .. . . .. . . . ................ . ... ....... ... . . .... . . ........ .. ... .. . . . . . ... .... . . . ............ . ........ ... . . . .. . . ... ....... . . . .. . . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 2 2 666 6 66 3333333 3 6 11 7 555555555555555 6 6 0000000000000000000000000000000000 7 0 0 0 222 999 555555 9 4 3333333333333333333333333333333 1111 1111111111 99 0 4 9 4 5 4 7 0 888 99 8 11 7 7 4 7 555 22 3 7 22 2 0 0 6666666666666666 8 444 7777777 777 7 7 3333 7 7 33333333 44 000 77 7 7 7 4 7 000 9999 7 0 7 111111111111 4 33333333 222 0 0 0 00 0 8 444 5555555 3 6 6 00 1 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAAA-ACATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA--CAAC-T---T----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTA-TGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-------AC-AATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAAAGACATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA--CAACGT---T----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTA-TGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-------AC-ANTTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TCAG--AGTAAAAACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT-TT--G-------ACAA-GCACT-TCAAATACAAAATAG-ACCAAG-A---TCAAGAGTT-G-A-ACATT---TCCCCACC-G-AAT-GT--TT--AAAT------AACCCCG-A------------------------------T--T--ATTTTTGTC----TCC-----CC---TCGCATTC--CA-A-TTCACT-GCCCCTTTGCTGCGCTAA-CAT---CTC--TGCCAAAGAT--GA-A-TTACAAAGTTTTTGTAAAA-CA-CCT--TGTA-CAG-A--GAAAATAT-ATAACCAACAT---TCTACATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTAATGT---GA-CAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAATTCCC-------ACTATTTTTGATTTTTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTTT--TTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : TTA-TGT---TG-TGA---ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAACTTGCT-------AC-AATTT-GATTT----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAA-ATTC--T-AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctca--CA-A-TTCTCT-G-CCCTCTGGT-CGCT-A-CAT---CTCT-TGTCGAAAATA-AA-A-TCACAAGGCTTTGGTAAAA-CA-C-T--AGTA-CAA-A--GAAAAGTT-ATAC-CAA------T----AT-CCCA-CTT-------AG---C-T-TGA--T-CA-ATTTA-TGT---T---GA-GAATTT---AAGATA
gi|12 : tTAATTC--A--AGTCAGTAAGTAAA--CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-T-GATTGTT--A-------AT-A-GCACT-CCAA-TACAAAATAG-A-CGAT-A---T------TT-ACC-ACACT---T
gi|13 : ggtcatcTACT-G-AAT-GT--T---AAAT------AGCCCCG-AGAGAA---------GAGGCCTATAGCTGTGTCGT--ATATTTGTC----TTT-----TT---TCCCCTTC---A-A-TTATCT-ACCC-TCTGCT-CGCTAA-CAT---CTC--TGTCATAGActtagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AATGTT--ACAATGTCACA--GCACT-ACAA-TTCAGAATAG-AC-GAG-A---TC-----TT---------------CCTACT-A-TAA-GTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AATGTT--A-------ACA--GCACT-CCAA-TAAAAAATAG-A-CGCA-A---TC-----TT-G-C-ACACTTAATTCCTACT-G-AAT-AT--TTTAAAAT------AGCCCCG-AGAGAA---------G---------------tcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTA-ATTC--TTAAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTgggcctgtg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGACAT--AATAAT--A-------ACAG-G-ACT-CCAA-TACAAAATAG-A-CGAG-ATCTTC-----TT-C-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTA-ATTC--TGAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGAC-GTGATTGTTTTA-------ACA--GCACTTCCAA-TACGAAATAGGAACGAGTA---TT-----TG-G-CCACACT---TCTTTACT-G-AAT-GT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCATG---------------TG-T--ATTTTTGTC----TTCTT---CT---TTCCCCTT--CA-AGTTATCTTGCCTCT-TGCT--GCTAAACAT---CTC--TGTCATAGTTTGAA-A-TTACAAAGTTTTTGT-AAA-CA-C-T--AGGG-CAGTA--G--AATTC-ATA--CG-------C----AAATCAAGCTT-------AG---CTT-TAA--T-CA-ATTTA-TGC---TGTCAA-GAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA----------------------ATTGT--TAT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTA-ATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCA-AATTA-TGT---TG-TTA-GAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAATTGCT-------AC-AATTTTGATTTT--A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTGA---AA-AAAATTCCT-------AC-AATTTTGATTTT--AA---TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TCAGTAAGTTT-TACATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTA-ATTC--T-AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCTGA-CA-----CC--TGTCAAAGCTG-AA-A-TTACAA
gi|29 : ---------------T--T--ATTTTTGTC-----TC-----CC---CCTCCATT--CA-A-TTCACT-GCCC
gi|3 : cccgaGCTAA-CAC---CTCAAT-TCTTAAAC--AA-AGTTGTA--GTTTATGTAAAAACAGC-TTAAGTAGCAA-AATGCAAATGT-AGA--CAATGTAGTT----ATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTAA-TGTCATTGATGA-TAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAATTCTTTTGAGGCAC-A-TATTGA-ATT--AATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTA-ATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TCAGTAAGTAAA--CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-T-GACTGTT--T-------ACAA--CACT-CCAA-TACAAAATAG-A-AGAG-A---TC-----TT-A-C-ACAC----TTCCTACT-G-AAT-G---TC--AAAT------AACCCTG-AGAGAA---------G---------------G--C--GTCTGTGTCGTATTTC-----CC---CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCCAA-CAT---CTCG-TGTCATAGAT--GACA-TTACAAGGGTTTTGTAAAA-CA-A-T--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TCAGTAAGTAAA--CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAACT-----C-TGAATTGGT--A-------TCAAAGTACT-CCAA-TACAAAATATTACGAAG-AA--TC-----TTTA-C-ACACT---TTT-TACT-GTAAT-GT--TT--AAAA------AGCCC-G-AGAGAA---------GGGACATGTG------T--TCGATTTTTGTC----TTC-----TTCTTTTTCCCTC--CA-A-TTATAT-ACCC-TCCGCT-CGCTAAACATTCTCTC--TGTCATAGATGAAA-A-TTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-C-T--AGTAACAG-A--GATATTTTCATA--CAAC-----T----CTACT----TT-------AG---C-TGTAA--C-----TTT--TGT---TG-T-A-GAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAA-TCTT-------AT-A--TTTGATTTA--TAT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATA-ATTC--TT-AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TCAGTAAGTAAT--CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TGCA-TGT-------------AA-GCACT-CCAA-TACAAAATAG-CACGAG-A---TC-----TT-A-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAA---------GGGGCCAGTG------TCGT--ATTTTTGTC----TTCTTTATTT---TCCCCCTT--CATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TC-TTA--TCAAGA--TCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AATGTT--A-------ACT--GCACT-CCAA-TACAAAATAG-AC-------------------------ACT---T-CCTACT-G-AAT-G---TT--AAAT------AACCC----GAAAA---------G---------------
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC--TTATTCAAG--ATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-T-GAATGTT--A-------AC-T-GCACT-CCAA-TACAAAATAG-AC-------------------A-C---------TTCCTACT-G-AAT-G---TT--AAAT------A
Alignments
lowQualScore : 1111111 222 2222222 22 222222222222222 4444444444444444444444444444444444 111 111111 9999999999999999999999999999999 1111 2222222222 1 1 11 22 1 55555555555555555 2222222 111 22222222 222 11 1 111 1111 11111 11111111 111 111 1111111 11
lowQualScore : 8 8 8 3 3333333 66 0 555 3 99 2222222 3 3 00 4 111111111111111 3 3 3333333333333333333333333333333333 3 4 4 4 111 777 111111 2 4 3333333333333333333333333333333 2222 8888888888 66 5 4 1 4 2 1 5 0 888 66 0 77 5 5 1 6 777 99 3 6 99 3 1 8 22222222222222222 0 999 1111111 111 6 6 9999 6 5 33333333 66 000 00 5 5 5 1 5 000 7777 5 5 0 44444 77 77 33333333 111 4 8 4 55 1 0 444 8888888 7 3 3 55 2 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... .. . ... . .. ....... . . .. . ............... . . .................................. . . . . ... ... ...... . . ............................... .... .......... .. . . . . . . . . ... .. . .. . . . . ... .. . . .. . . . ................. . ... ....... ... . . .... . . ........ .. ... .. . . . . . ... .... . . . ..... .. .. ........ ... . . . .. . . ... ....... . . . .. . . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 99 2 999 6 66 3333333 3 6 11 7 555555555555555 6 6 0000000000000000000000000000000000 7 0 0 0 222 999 555555 9 4 3333333333333333333333333333333 1111 1111111111 99 0 4 9 4 5 4 7 0 888 99 8 11 7 7 4 7 555 22 3 7 22 2 0 0 44444444444444444 8 444 7777777 777 7 7 3333 7 7 33333333 44 000 77 7 7 7 4 7 000 9999 7 0 7 33333 11 11 33333333 222 0 0 0 00 0 8 444 5555555 3 6 6 00 1 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TC--AGTAAGTAAA--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTA-TGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----ACA-ATTTT-GATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TC--AGTAAGTAAAA-CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTA-TGT---TG-CGA-GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----ACA-ATTTT-GATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TC--AG--AGTAAAAACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT-TT--G-------ACAA-GCACT-TCAAATACAAAATAG-ACCAAG-A---TCAAGAGTT-G-A-ACATT---TCCCCACC-G-AAT-GT--TT--AAAT------AACCCCG-A------------------------------T--T--ATTTTTGTC----TCC-----CC---TCGCATTC--CA-A-TTCACT-GCCCCTTTGCTGCGCTAA-CAT---CTC--TGCCAAAGAT--GA-A-TTACAAAGTTTTTGTAAAA-CA-CCT--TGTA-CAG-A--GAAAATAT-ATAACCAACA---TTCTACATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTAATGT---GA-CAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAATTCCC-----ACT-ATTTTTGATTTTTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTTT--TTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : TTA-TGT---TG-TGA---ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAACTTGCT-----ACA-ATTT--GATTT----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAA-ATTC--T-AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctca--CA-A-TTCTCT-G-CCCTCTGGT-CGCT-A-CAT---CTCT-TGTCGAAAATA-AA-A-TCACAAGGCTTTGGTAAAA-CA-C-T--AGTA-CAA-A--GAAAAGTT-ATAC-CAA------T----AT-CCCA-CTT-------AG---C-T-TGA--T-CA-ATTTA-TGT---T---GA-GAATTT---AAGATA
gi|12 : tTAATTC--A--AGTC--AGTAAGTAAA--CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-T-GATTGTT--A-------AT-A-GCACT-CCAA-TACAAAATAG-A-CGAT-A---T------TT-ACC-ACACT---T
gi|13 : ggtcatcTACT-G-AAT-GT--T---AAAT------AGCCCCG-AGAGAA---------GAGGCCTATAGCTGTGTCGT--ATATTTGTC----TTT-----TT---TCCCCTTC---A-A-TTATCT-ACCC-TCTGCT-CGCTAA-CAT---CTC--TGTCATAGActtagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AATGTT--ACAATGTCACA--GCACT-ACAA-TTCAGAATAG-AC-GAG-A---TC-----TT---------------CCTACT-A-TAA-GTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AATGTT--A-------ACA--GCACT-CCAA-TAAAAAATAG-A-CGCA-A---TC-----TT-G-C-ACACTTAATTCCTACT-G-AAT-AT--TTTAAAAT------AGCCCCG-AGAGAA---------G---------------tcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTA-ATTC--TTAAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTgggcctgtg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGACAT--AATAAT--A-------ACAG-G-ACT-CCAA-TACAAAATAG-A-CGAG-ATCTTC-----TT-C-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTA-ATTC--TGAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGAC-GTGATTGTTTTA-------ACA--GCACTTCCAA-TACGAAATAGGAACGAGTA---TT-----TG-G-CCACACT---TCTTTACT-G-AAT-GT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCATG---------------TG-T--ATTTTTGTC----TTCTT---CT---TTCCCCTT--CA-AGTTATCTTGCCTCT-TGCT--GCTAAACAT---CTC--TGTCATAGTTTGAA-A-TTACAAAGTTTTTGT-AAA-CA-C-T--AGGG-CAGTA--G--AATTC-ATA--CG-------C----AAATCAAGCTT-------AG---CTT-TAA--T-CA-ATTTA-TGC---TGTCAA-GAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA---------------------ATTGT--TAT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTA-ATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCA-AATTA-TGT---TG-TTA-GAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAATTGCT-----ACA-ATTTT-GATTTT--A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTGA---AA-AAAATTCCT-----ACA-ATTTT-GATTTT--AA---TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TC--AGTAAGTTTTA-CATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTA-ATTC--T-AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCTGA-CA-----CC--TGTCAAAGCTG-AA-A-TTACAA
gi|29 : ---------------T--T--ATTTTTGTC-----TC-----CC---CCTCCATT--CA-A-TTCACT-GCCC
gi|3 : cccgaGCTAA-CAC---CTCAAT-TCTTAAAC--AA-AGTTGTA--GTTTATGTAAAAACAGC-TTAAGTAGCAA-AATGCAAATGT-AGA--CAATGTAGTT----ATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTAA-TGTCATTGATGA-TAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAATTCTTTTGAGGCACATATT-GA-ATT--AATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTA-ATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TC--AGTAAGTAAA--CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-T-GACTGTT--T-------ACAA--CACT-CCAA-TACAAAATAG-A-AGAG-A---TC-----TT-A-C-ACAC----TTCCTACT-G-AAT-G---TC--AAAT------AACCCTG-AGAGAA---------G---------------G--C--GTCTGTGTCGTATTTC-----CC---CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCCAA-CAT---CTCG-TGTCATAGAT--GACA-TTACAAGGGTTTTGTAAAA-CA-A-T--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TC--AGTAAGTAAA--CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAACT-----C-TGAATTGGT--A-------TCAAAGTACT-CCAA-TACAAAATATTACGAAG-AA--TC-----TTTA-C-ACACT---TTT-TACT-GTAAT-GT--TT--AAAA------AGCCC-G-AGAGAA---------GGGACATGTG------T--TCGATTTTTGTC----TTC-----TTCTTTTTCCCTC--CA-A-TTATAT-ACCC-TCCGCT-CGCTAAACATTCTCTC--TGTCATAGATGAAA-A-TTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-C-T--AGTAACAG-A--GATATTTTCATA--CAAC----TC-----TACT----TT-------AG---C-TGTAA--C-----TTT--TGT---TG-T-A-GAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAA-TCTT-----ATA---TTT-GATTTA--TAT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATA-ATTC--TT-AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TC--AGTAAGTAAT--CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TGCA-TGT-------------AA-GCACT-CCAA-TACAAAATAG-CACGAG-A---TC-----TT-A-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAA---------GGGGCCAGTG------TCGT--ATTTTTGTC----TTCTTTATTT---TCCCCCTT--CATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TCTTATCAAG-------ATCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AATGTT--A-------ACT--GCACT-CCAA-TACAAAATAG-AC-------------------------ACT---T-CCTACT-G-AAT-G---TT--AAAT------AACCC----GAAAA---------G---------------
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC----TTATTCAAG--ATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-T-GAATGTT--A-------AC-T-GCACT-CCAA-TACAAAATAG-AC-------------------A-C---------TTCCTACT-G-AAT-G---TT--AAAT------A
Alignments
lowQualScore : 1111111 2222222 22 222222222222222 4444444444444444444444444444444444 111 111111 9999999999999999999999999999999 1111 2222222222 1 1 11 22 1 1 55555555555555555 2222222 111 222222222 222 11 1 111 1111 11111111111 11111111 111 111 1111111 11
lowQualScore : 8 8 8 3 3333333 3 0 5 66 3 99 2222222 3 3 00 4 111111111111111 3 3 3333333333333333333333333333333333 3 4 4 4 111 777 111111 2 4 3333333333333333333333333333333 2222 8888888888 66 5 4 1 4 2 1 5 0 888 66 0 77 5 5 1 6 3 99 3 6 99 3 1 8 22222222222222222 0 999 1111111 111 6 6 9999 6 5 999999999 0 000 00 5 5 5 1 5 000 7777 5 5 0 77777777777 1 33333333 111 4 8 4 55 1 0 444 8888888 7 3 3 55 2 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... . . . .. . .. ....... . . .. . ............... . . .................................. . . . . ... ... ...... . . ............................... .... .......... .. . . . . . . . . ... .. . .. . . . . . .. . . .. . . . ................. . ... ....... ... . . .... . . ......... . ... .. . . . . . ... .... . . . ........... . ........ ... . . . .. . . ... ....... . . . .. . . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 2 2 0 99 6 66 3333333 3 6 11 7 555555555555555 6 6 0000000000000000000000000000000000 7 0 0 0 222 999 555555 9 4 3333333333333333333333333333333 1111 1111111111 99 0 4 9 4 5 4 7 0 888 99 8 11 7 7 4 7 3 22 3 7 22 2 0 0 44444444444444444 8 444 7777777 777 7 7 3333 7 7 000000000 7 000 77 7 7 7 4 7 000 9999 7 0 7 77777777777 4 33333333 222 0 0 0 00 0 8 444 5555555 3 6 6 00 1 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----AC-A-ATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----AC-A-ATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TCAG--AGTAA-AAACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT-TT--G-------ACAA-GCACT-TCAAATACAAAATAG-ACCAAG-A---TCAAGAGTT-G-A-ACATT---TCCCCACC-G-AAT-GT--TT--AAAT------AACCCCG-A------------------------------T--T--ATTTTTGTC----TCC-----CC---TCGCATTC--CA-A-TTCACT-GCCCCTTTGCTGCGCTAA-CAT---CTC--TGCCAAAGAT--GA-A-TTACAAAGTTTTTGTAAAA-CACCT--TGTA-CAG-A--GAAAATAT-ATAACCAACA---TTCTACATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTAATGT---GA-CAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAATTCCC-----ACTA-TTTTTGATTTTTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTTT--TTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : TT-ATGT---TG-T-GA--ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAACTTGCT-----AC-A-ATTT-GATTT----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAA-ATTC--T-AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctca--CA-A-TTCTCT-G-CCCTCTGGT-CGCT-A-CAT---CTCT-TGTCGAAAATA-AA-A-TCACAAGGCTTTGGTAAAA-CA-CT--AGTA-CAA-A--GAAAAGTT-ATAC-CAA------T----AT-CCCA-CTT-------AG---C-T-TGA--T-CA-ATTT-ATGT---T----GAGAATTT---AAGATA
gi|12 : tTAATTC--A--AGTCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-T-GATTGTT--A-------AT-A-GCACT-CCAA-TACAAAATAG-A-CGAT-A---T------TT-ACC-ACACT---T
gi|13 : ggtcatcTACT-G-AAT-GT--T---AAAT------AGCCCCG-AGAGAA---------GAGGCCTATAGCTGTGTCGT--ATATTTGTC----TTT-----TT---TCCCCTTC---A-A-TTATCT-ACCC-TCTGCT-CGCTAA-CAT---CTC--TGTCATAGActtagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AATGTT--ACAATGTCACA--GCACT-ACAA-TTCAGAATAG-AC-GAG-A---TC-----TT---------------CCTACT-A-TAA-GTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AATGTT--A-------ACA--GCACT-CCAA-TAAAAAATAG-A-CGCA-A---TC-----TT-G-C-ACACTTAATTCCTACT-G-AAT-AT--TTTAAAAT------AGCCCCG-AGAGAA---------G---------------tcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTA-ATTC--TTAAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTgggcctgtg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGACAT--AATAAT--A-------ACAG-G-ACT-CCAA-TACAAAATAG-A-CGAG-ATCTTC-----TT-C-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTA-ATTC--TGAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGAC-GTGATTGTTTTA-------ACA--GCACTTCCAA-TACGAAATAGGAACGAGTA---TT-----TG-G-CCACACT---TCTTTACT-G-AAT-GT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCATG---------------TG-T--ATTTTTGTC----TTCTT---CT---TTCCCCTT--CA-AGTTATCTTGCCTCT-TGCT--GCTAAACAT---CTC--TGTCATAGTTTGAA-A-TTACAAAGTTTTTGT-AAA-CA-CT--AGGG-CAGTA--G--AATTC-ATA--CG-------C----AAATCAAGCTT-------AG---CTT-TAA--T-CA-ATTT-ATGC---TGTC-AAGAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA---------------------ATTGT--TAT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTA-ATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCA-AATT-ATGT---TG-T-TAGAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAATTGCT-----AC-A-ATTTTGATTTT--A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTGA---AA-AAAATTCCT-----AC-A-ATTTTGATTTT--AA---TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TCAGTAAGTTTTA--CATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTA-ATTC--T-AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCTGA-CA-----CC--TGTCAAAGCTG-AA-A-TTACAA
gi|29 : ---------------T--T--ATTTTTGTC-----TC-----CC---CCTCCATT--CA-A-TTCACT-GCCC
gi|3 : cccgaGCTAA-CAC---CTCAAT-TCTTAAAC--AA-AGTTGTA--GTTTATGTAAAAACAGCTTAAGTAGCAA-AATGCAAATGT-AGA--CAATGTAGTT----ATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTA-ATGTCATTGAT-GATAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAATTCTTTTGAGGC-ACATATTGA-ATT--AATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTA-ATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-T-GACTGTT--T-------ACAA--CACT-CCAA-TACAAAATAG-A-AGAG-A---TC-----TT-A-C-ACAC----TTCCTACT-G-AAT-G---TC--AAAT------AACCCTG-AGAGAA---------G---------------G--C--GTCTGTGTCGTATTTC-----CC---CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCCAA-CAT---CTCG-TGTCATAGAT--GACA-TTACAAGGGTTTTGTAAAA-CA-AT--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TCAGTAAGTAA-A--CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAACT-----C-TGAATTGGT--A-------TCAAAGTACT-CCAA-TACAAAATATTACGAAG-AA--TC-----TTTA-C-ACACT---TTT-TACT-GTAAT-GT--TT--AAAA------AGCCC-G-AGAGAA---------GGGACATGTG------T--TCGATTTTTGTC----TTC-----TTCTTTTTCCCTC--CA-A-TTATAT-ACCC-TCCGCT-CGCTAAACATTCTCTC--TGTCATAGATGAAA-A-TTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-CT--AGTAACAG-A--GATATTTTCATA--CAAC----TC-----TACT----TT-------AG---C-TGTAA--C-----TTT--TGT---TG-T--AGAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAA-TCTT-----AT-A---TTTGATTTA--TAT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATA-ATTC--TT-AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TCAGTAAGTAA-T--CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TGCA-TGT-------------AA-GCACT-CCAA-TACAAAATAG-CACGAG-A---TC-----TT-A-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAA---------GGGGCCAGTG------TCGT--ATTTTTGTC----TTCTTTATTT---TCCCCCTT--CATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TC-TTA--TCA-A--GATCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AATGTT--A-------ACT--GCACT-CCAA-TACAAAATAG-AC-------------------------ACT---T-CCTACT-G-AAT-G---TT--AAAT------AACCC----GAAAA---------G---------------
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC--TTATTCA-A--GATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-T-GAATGTT--A-------AC-T-GCACT-CCAA-TACAAAATAG-AC-------------------A-C---------TTCCTACT-G-AAT-G---TT--AAAT------A
Alignments
lowQualScore : 1111111 2222222 22 222222222222222 4444444444444444444444444444444444 111 111111 9999999999999999999999999999999 1111 2222222222 1 1 11 22 1 1 55555555555555555 2222222 111 222222222 222 11 1 111 1111 11111111111 11111111 111 111 1111111 11
lowQualScore : 8 8 8 3 3333333 3 0 5 66 3 99 2222222 3 3 00 4 111111111111111 3 3 3333333333333333333333333333333333 3 4 4 4 111 777 111111 2 4 3333333333333333333333333333333 2222 8888888888 66 5 4 1 4 2 1 5 0 888 66 0 77 5 5 1 6 3 99 3 6 99 3 1 8 22222222222222222 0 999 1111111 111 6 6 9999 6 5 999999999 0 000 00 5 5 5 1 5 000 7777 5 5 0 77777777777 1 33333333 111 4 8 4 55 1 0 444 8888888 7 3 3 55 2 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... . . . .. . .. ....... . . .. . ............... . . .................................. . . . . ... ... ...... . . ............................... .... .......... .. . . . . . . . . ... .. . .. . . . . . .. . . .. . . . ................. . ... ....... ... . . .... . . ......... . ... .. . . . . . ... .... . . . ........... . ........ ... . . . .. . . ... ....... . . . .. . . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 2 2 0 99 6 66 3333333 3 6 11 7 555555555555555 6 6 0000000000000000000000000000000000 7 0 0 0 222 999 555555 9 4 3333333333333333333333333333333 1111 1111111111 99 0 4 9 4 5 4 7 0 888 99 8 11 7 7 4 7 3 22 3 7 22 2 0 0 44444444444444444 8 444 7777777 777 7 7 3333 7 7 000000000 7 000 77 7 7 7 4 7 000 9999 7 0 7 77777777777 4 33333333 222 0 0 0 00 0 8 444 5555555 3 6 6 00 1 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----AC-A-ATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----AC-A-ATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TCAG--AGTAA-AAACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT-TT--G-------ACAA-GCACT-TCAAATACAAAATAG-ACCAAG-A---TCAAGAGTT-G-A-ACATT---TCCCCACC-G-AAT-GT--TT--AAAT------AACCCCG-A------------------------------T--T--ATTTTTGTC----TCC-----CC---TCGCATTC--CA-A-TTCACT-GCCCCTTTGCTGCGCTAA-CAT---CTC--TGCCAAAGAT--GA-A-TTACAAAGTTTTTGTAAAA-CACCT--TGTA-CAG-A--GAAAATAT-ATAACCAACA---TTCTACATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTAATGT---GA-CAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAATTCCC-----ACTA-TTTTTGATTTTTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTTT--TTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : TT-ATGT---TG-T-GA--ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAACTTGCT-----AC-A-ATTT-GATTT----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAA-ATTC--T-AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctca--CA-A-TTCTCT-G-CCCTCTGGT-CGCT-A-CAT---CTCT-TGTCGAAAATA-AA-A-TCACAAGGCTTTGGTAAAA-CA-CT--AGTA-CAA-A--GAAAAGTT-ATAC-CAA------T----AT-CCCA-CTT-------AG---C-T-TGA--T-CA-ATTT-ATGT---T----GAGAATTT---AAGATA
gi|12 : tTAATTC--A--AGTCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-T-GATTGTT--A-------AT-A-GCACT-CCAA-TACAAAATAG-A-CGAT-A---T------TT-ACC-ACACT---T
gi|13 : ggtcatcTACT-G-AAT-GT--T---AAAT------AGCCCCG-AGAGAA---------GAGGCCTATAGCTGTGTCGT--ATATTTGTC----TTT-----TT---TCCCCTTC---A-A-TTATCT-ACCC-TCTGCT-CGCTAA-CAT---CTC--TGTCATAGActtagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AATGTT--ACAATGTCACA--GCACT-ACAA-TTCAGAATAG-AC-GAG-A---TC-----TT---------------CCTACT-A-TAA-GTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AATGTT--A-------ACA--GCACT-CCAA-TAAAAAATAG-A-CGCA-A---TC-----TT-G-C-ACACTTAATTCCTACT-G-AAT-AT--TTTAAAAT------AGCCCCG-AGAGAA---------G---------------tcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTA-ATTC--TTAAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTgggcctgtg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGACAT--AATAAT--A-------ACAG-G-ACT-CCAA-TACAAAATAG-A-CGAG-ATCTTC-----TT-C-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTA-ATTC--TGAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGAC-GTGATTGTTTTA-------ACA--GCACTTCCAA-TACGAAATAGGAACGAGTA---TT-----TG-G-CCACACT---TCTTTACT-G-AAT-GT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTGCATG---------------TG-T--ATTTTTGTC----TTCTT---CT---TTCCCCTT--CA-AGTTATCTTGCCTCT-TGCT--GCTAAACAT---CTC--TGTCATAGTTTGAA-A-TTACAAAGTTTTTGT-AAA-CA-CT--AGGG-CAGTA--G--AATTC-ATA--CG-------C----AAATCAAGCTT-------AG---CTT-TAA--T-CA-ATTT-ATGC---TGTC-AAGAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA---------------------ATTGT--TAT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTA-ATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCA-AATT-ATGT---TG-T-TAGAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAATTGCT-----AC-A-ATTTTGATTTT--A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTGA---AA-AAAATTCCT-----AC-A-ATTTTGATTTT--AA---TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TCAGTAAGTTTTA--CATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTA-ATTC--T-AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCTGA-CA-----CC--TGTCAAAGCTG-AA-A-TTACAA
gi|29 : ---------------T--T--ATTTTTGTC-----TC-----CC---CCTCCATT--CA-A-TTCACT-GCCC
gi|3 : cccgaGCTAA-CAC---CTCAAT-TCTTAAAC--AA-AGTTGTA--GTTTATGTAAAAACAGCTTAAGTAGCAA-AATGCAAATGT-AGA--CAATGTAGTT----ATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTA-ATGTCATTGAT-GATAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAATTCTTTTGAGGC-ACATATTGA-ATT--AATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTA-ATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-T-GACTGTT--T-------ACAA--CACT-CCAA-TACAAAATAG-A-AGAG-A---TC-----TT-A-C-ACAC----TTCCTACT-G-AAT-G---TC--AAAT------AACCCTG-AGAGAA---------G---------------G--C--GTCTGTGTCGTATTTC-----CC---CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCCAA-CAT---CTCG-TGTCATAGAT--GACA-TTACAAGGGTTTTGTAAAA-CA-AT--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TCAGTAAGTAA-A--CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAACT-----C-TGAATTGGT--A-------TCAAAGTACT-CCAA-TACAAAATATTACGAAG-AA--TC-----TTTA-C-ACACT---TTT-TACT-GTAAT-GT--TT--AAAA------AGCCC-G-AGAGAA---------GGGACATGTG------T--TCGATTTTTGTC----TTC-----TTCTTTTTCCCTC--CA-A-TTATAT-ACCC-TCCGCT-CGCTAAACATTCTCTC--TGTCATAGATGAAA-A-TTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-CT--AGTAACAG-A--GATATTTTCATA--CAAC----TC-----TACT----TT-------AG---C-TGTAA--C-----TTT--TGT---TG-T--AGAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAA-TCTT-----AT-A---TTTGATTTA--TAT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATA-ATTC--TT-AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TCAGTAAGTAA-T--CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TGCA-TGT-------------AA-GCACT-CCAA-TACAAAATAG-CACGAG-A---TC-----TT-A-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAA---------GGGGCCAGTG------TCGT--ATTTTTGTC----TTCTTTATTT---TCCCCCTT--CATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TC-TTA--TCA-A--GATCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AATGTT--A-------ACT--GCACT-CCAA-TACAAAATAG-AC-------------------------ACT---T-CCTACT-G-AAT-G---TT--AAAT------AACCC----GAAAA---------G---------------
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC--TTATTCA-A--GATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-T-GAATGTT--A-------AC-T-GCACT-CCAA-TACAAAATAG-AC-------------------A-C---------TTCCTACT-G-AAT-G---TT--AAAT------A
blockSeqs : . . G G GTGA A T . . CA ATACATG . A TG T ACAATGTCACA T . GAACGAGTATTTGGCCACACT T A T T TAA TTA CACTGT C G GAGGCCTATAGCTGTGTCGT GTAT TTTATTT TT T G C T C C . A TCT AA TG C G G A G TA G T AT A T C CAATGTAGTTA AAG CCAATGT TCT T G CCT T . CATTGATG CAA TA C A A A A ATG CATG G T TTGAGGCACA T TAATTA GAA A C A TC G ATG TACCATG C G . TT T AAAA G . AT T CA T T T
blockSeqs : . . . A GTGA A . . . TA TACATG . . GA A TTAACA . . TACGAAGAATCTTTACACACT T . . . T T . C . GGGACATGTGTTCG . TTCTT . . . A . C C . A . T GA . . A . . . A . . C T . CCAATA CA . . . . TT . . TGTCA . A . . . A . . A . T ACAA T TTAT TT . A . . G ATT CT G . . . G . . . CA . . . . .
blockSeqs : . . . T AAG A . . . AA . . . GC A ATCAAA . . ACGCAATCTTGCACACTTAA C . . . T A . C . GGGGCCAGTGTCGT . TTCT . . . A . C C . . . G A . . G . . . . . . A G . CAACTC AA . . . . T . . TGTG . A . . . . . . . . T ACAA T ATAT TA . . . . T TT . . . . . T . . . . . . . . .
blockSeqs : . . . T AC A . . . TG . . . G A AACAG . . ACGAGATCTTCTTCCACAC T . . . T C . C . TGGCTGCATGTGT . TT . . . T . C . . . . . G . . . . . . . . . A T . CGCA . . . . . T . . TGTT . A . . . . . . . . T ACAA T TAA GA . . . . G TT . . . . . T . . . . . . . . .
blockSeqs : GA A . . . TG . . . G T TACAA . . ACGATATTTACCACACT T . . . T T . T . GGC . CC . . . C . C . . . . . . . . . . . . . . . . . . . C . . TGT . . . . . . . . . . . ATA . AT A . . . . G TT . . . . . T . . . . . . . . .
blockSeqs : GG . . . . CA . . . G C AATA . . AAGAGATCTTACACAC T . . . T G . C . . CC . . . C . . . . . . . . . . . TG . . . . . . . . . . . . . . . . . G T . . . . . T . . . . . . . . .
blockSeqs : . . . . CC . . . G T AACA . . CACGAGATCTTAAAC . . . . . T . . . . . . A . . . . . . . . . T T . . . . . T . . . . . . . . .
blockSeqs : . CA . . . G A AACT . . ACGAGATCTT . . . . . T . . . . T . . . . . T T . . . . . T . . . . . . . . .
blockSeqs : . T . . . G A AACT . . ACACT . . . . . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . G . . . . . AA . . ACAC . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** G* AACA*********** ACGAGATCTTACACACT***************** GGGGCGTGTCGT******************* G* CANTA************ TGTG***** *** ACAA******* TAT*****
originalCons : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TGGAATGTT--A-------ACAA-GCACT-CCAA-TACAAAATAG-ACCGAG-A---TC-----TT-A-C-ACACT---TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAA---------G---------------T--T--ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGAT--AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATA--CAAC----TT----ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGT---TG-C-GAGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCT-----AC-A-ATTTTGATTTT--AAT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
finalCons : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TG-AATGTTAACA-----------GCACT-CCAA-TACAAAATAGACGAGATCTTACACACT-----------------TTCCTACT-G-AAT-GT--TT--AAAT------AGCCCCG-AGAGAAGGGGCGTGTCGT-------------------ATTTTTGTC----TTC-----CC---TCCCCCTC--CA-A-TTCTCT-GCCCCTCTGCT-CGCTAA-CAT---CTC--TGTCATAGATG-AA-A-TTACAAGGTTTTTGTAAAA-CA-CT--AGTA-CAG-A--GAAAATTT-ATACANTA------------TACCAA-CTT-------AG---C-T-TAA--T-CA-ATTT-ATGTTGTG-----AGAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAATTCCTACAA-------TTTTGATTTTAT-----TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Alignments
lowQualScore : 1111111 2222222 1111111111 33333333333333333333333333333333 111 111111 333333333333333 111 111 22222 1 11 1 6666666666666666 2222222 111 111 11111 222 11 1 111 1111 11111111111 11111 111 111 1111111 11
lowQualScore : 8 8 8 3 3333333 3 0 5 66 3 99 2222222 3 3 3 55 3 3333333333 3 3 3 3 88 55555555555555555555555555555555 1 4 4 4 111 777 111111 4 777777777777777 000 6 000 0 22222 5 4 1 4 2 1 5 5 5 888 11 5 0 5 5 0 1 6 777 99 3 6 99 3 1 8 1111111111111111 0 999 1111111 111 6 6 9999 6 000 5 88 22222 000 00 5 5 5 1 5 000 2222 5 44444444444 77 77 5 77777 99 111 4 8 4 55 1 0 444 8888888 7 3 3 55 2 0 7777 3 3 00 3 55 4 4 4
lowQualScore : . . . . ....... . . . .. . .. ....... . . . .. . .......... . . . . .. ................................ . . . . ... ... ...... . ............... ... . ... . ..... . . . . . . . . . ... .. . . . . . . . ... .. . . .. . . . ................ . ... ....... ... . . .... . ... . .. ..... ... .. . . . . . ... .... . ........... .. .. . ..... .. ... . . . .. . . ... ....... . . . .. . . .... . . .. . .. . . .
lowQualScore : 0 0 0 2 6666666 2 2 0 99 6 66 3333333 3 6 6 00 6 7777777777 6 6 6 6 66 55555555555555555555555555555555 3 0 0 0 222 999 555555 4 777777777777777 000 7 000 1 11111 0 4 9 4 5 4 7 0 0 888 99 0 8 0 7 1 4 7 555 22 3 7 22 2 0 0 8888888888888888 8 444 7777777 777 7 7 3333 7 000 7 77 99999 000 77 7 7 7 4 7 000 1111 7 99999999999 11 11 7 44444 22 222 0 0 0 00 0 8 444 5555555 3 6 6 00 1 4 7777 6 6 00 6 00 0 0 4
consensus : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TG-AAT--GT-T--A-------ACA-GCACT-CCAA-TACAAAATA-G--AC-GA--G-A---TC-----TTA-C-ACACT---TTCCTACT-G-AA-TGT--TT--AAAT------AGCCCCG-AGAGAAGGG--G--C--------GTG---TCGTATTTTTG---TCTTC-----CCTCCCCCTCCA-A-TTCTCT-GCCCCTCTGCT-CGCT-AA-CA---TCTC--T-GTCATAG-ATG-AAATTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA-----CAA-T-TA---ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTATGT---TG-T-GA----GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAA-TTCCT-----ACA-ATTTT-GATT-T-T---AT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
Reference ( family-6528 ) : TACGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACGATAACTC--G--A-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTCGAA-------TAACA-GAGAC-TG-AAT--GT-T--A-------ACA-GCACT-CCAA-TACAAAATA-G--AC-GA--G-A---TC-----TTA-C-ACACT---TTCCTACT-G-AA-TGT--TT--AAAT------AGCCCCG-AGAGAAGGG--G--C--------GTG---TCGTATTTTTG---TCTTC-----CCTCCCCCTCCA-A-TTCTCT-GCCCCTCTGCT-CGCT-AA-CA---TCTC--T-GTCATAG-ATG-AAATTACAAGGTTTTTGTAAAA-CA-C-T--AGTA-CAG-A--GAAAATTT-ATA-----CAN-T------ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTATGT---TG-T-GA----GAATTT---AAGATAAAA-AT-T-GTTTT-A-C-C---GCTGTG----AA-CAAA-TTCCT-----ACA-ATTTT-GATT-T-T---AT--TCCG-ATTAAAT-T-TCT-CCGGGT--TTCANGAT-TTGTAA-------TACA-T-GTA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|1 : TACGGTCATATCAGTAAAGTGTGG-CATGTAAATATAACGATAATTC--A--A-TCAG--AGTAA-AAACA-CTTGTGCTTGATTAATTATTGTTTTAAA-------TAACAAGGGAC-TGGAAT---T-T--G-------ACAAGCACT-TCAAATACAAAATA-G--ACCAA--G-A---TCAAGAGTTG-A-ACATT---TCCCCACC-G-AA-TGT--TT--AAAT------AACCCCG-A----------------------------T--TATTTTTG---TCTCC-----CCTCGCATTCCA-A-TTCACT-GCCCCTTTGCTGCGCT-AA-CA---TCTC--T-GCCAAAG-ATG-AA-TTACAAAGTTTTTGTAAAA-CA-CCT--TGTA-CAG-A--GAAAATAT-ATAACCAACAT-TCTAC--ATACCAA-CTT-------AG---C-T-TAA--T-CA-ATTTAA-----TG-T-GACAAAGAATTTTAAAAAATATAA-AT-T-GTTTT-A-C-C---A-TGTG----AA-CAAA-TTCCC-----ACT-ATTTTTGATT-T-TTAAAC--TACG-ATTAAAT-T-TCT-CCGGTT--TTCATGAT-TTATAA-------TACA-T-GTATTTTT--TTAGATTTCTC----ATC-GGATTT--TA-TTT--TCC-ACGTTTTA-GTAATA-TTACT
gi|10 : TTATGT---TG-T-GA------ATTT---AAGATAAAA-ATCT-GCTTT-A-C-C---GCTGTG----A--CAAC-TTGCT-----ACA-ATTT--GATT-T-----AT--TCCA---TAAAT-T-TCT-CCGGGT--TT-AGGAT-T-GTAA-------TACA-T-GAA-ATTC--T-AAATTTTTC----ATC-GG-TTT--AA-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|11 : ttctcaCA-A-TTCTCT-GCCC-TCTGGT-CGCT-A--CA---TCTC--TTGTCGAAA-ATA-AAATCACAAGGCTTTGGTAAAA-CA-C-T--AGTA-CAA-A--GAAAAGTT-ATAC----CAA-T------AT-CCCA-CTT-------AG---C-T-TGA--T-CA-ATTTATGT------T-GA----GAATTT---AAGATA
gi|12 : tTAATTC--A--AGTCAGTAAGTAA-A--CATCTTGTGTTTGATTAATTATT-TTTT-AA-------TAACA-GAGAC-TG-ATT--GT-T--A-------ATA-GCACT-CCAA-TACAAAATA-G--AC-GA--T-A---T------TTACC-ACACT---T
gi|13 : ggtcatcTACT-G-AA-TGT--T---AAAT------AGCCCCG-AGAGAAGAG--G--CCTATAGCTGTG---TCGTATATTTG---TCTTT-----TTTCCCCTTC-A-A-TTATCT-ACCC-TCTGCT-CGCT-AA-CA---TCTC--T-GTCATAG-Acttagt
gi|14 : tATT-TTTCAAG-------TAACA-GAGGT-TG-AAT--GT-T--ACAATGTCACA-GCACT-ACAA-TTCAGAATA-G--AC-GA--G-A---TC-------------------TTCCTACT-A-TA-AGTAATT--AAAT------AGCCCCG-AGAGA
gi|15 : tgCA-GAGAC-TG-AAT--GT-T--A-------ACA-GCACT-CCAA-TAAAAAATA-G--AC-GC--A-A---TC-----TTG-C-ACACTTAATTCCTACT-G-AA-TAT--TTTAAAAT------AGCCCCG-AGAGAAGGG--G--C--------CTG---Ttcga
gi|16 : AAAT-T-CTT-CCGGGT--TTCAGG-C-TTGTAA-------TACACT-GTA-ATTC--TTAAATTT-TC----ATC-GG-TTTATTC-TTTCATCC-ACGTTTTA-GTAACA-CTACTg
gi|17 : taaGTGTTTGATTA----TT-TTTTAAC-------TAACA-GAGAC-AT-AAT--AA-T--A-------ACA-GGACT-CCAA-TACAAAATA-G--AC-GA--G-ATCTTC-----TTC-C-ACAC----TTCCTAC
gi|18 : AAAT-T-CTT-CTGGGT--TTCATTAT---ATAA-------TACA-T-GTA-ATTC--TGAAATTTCTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|19 : aTAAAT-TCTCT-CCGGGT--TTCAGG---TTGTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACTa
gi|2 : TAATTTTT-TTTAAAA-------TAACC-AGGACGTG-ATT--GT-TTTA-------ACA-GCACTTCCAA-TACGAAATA-GGAAC-GA--GTA---TT-----TGG-CCACACT---TCTTTACT-G-AA-TGT--TA--AAATCACTGTAGTCCCGGAGAGAATGGCTG--C--------ATG---T-GTATTTTTG---TCTTCTT---CTTTCCCCTTCA-AGTTATCTTGCCTCT-TGCT--GCT-AAACA---TCTC--T-GTCATAGTTTG-AAATTACAAAGTTTTTGT-AAA-CA-C-T--AGGG-CAGTA--G--AATTC-ATA-----C-G-C------AAATCAAGCTT-------AG---CTT-TAA--T-CA-ATTTATGC---TG-TCAA----GAATTTCAAAAGAT-AAA-AC-T-GTTTTAA-T-C---GCTGTG----AA-CAAA----------------------ATTGT-T---AT--TCCT-TTTAAATAT-TCT-CCGGGT--TTCAGGATATGGTAA-------T--A-T-GTA-ATTC---TAAATTTCTC-----TT-GG-TTT--TCTTTT--TCC-ACGTTTTA-GTAACATCTA
gi|20 : taatacggtcattatctcaagtcag-------AG---C-T-TTA--TTCA-AATTATGT---TG-T-TA----GAATTT---AA--TAAAA--T-T-GCTTT-AAC-C---GCTGTGCATGAA-CAAA-TTGCT-----ACA-ATTTT-GATT-T-T---A
gi|21 : c-T-TCT-CCGGGT--TTCAGGAT-T-GTAA-------TACC-T-GTA-ATTC--TTAAATTTTTC----ATC-GG-TTT--TC-TTT--TCC-ACGTTTTA-GTAACA-CTACT
gi|22 : aaAGATAAAA--T-T-GTTTT-A-C-C---GCTGTG----AA-AAAAATTCCT-----ACA-ATTTT-GATT-T-T---AA--TCCT-ATTAAAT-T-TCT-CCGGGT--TT
gi|23 : ACTC--A--C-TCAGTAAGTTTTA--CATCTTGTGTTTGATTTATTATT-CTT-GAA-------CAACA-GA
gi|24 : aattcgtgatctcGGCCATA-CAG-CAAGTGTGG-AATGTAAATATAAGGATGAC
gi|25 : tagtgtT--TTGATGAT-T-ATAA-------TACA-T-GCA-ATTC--TTAAATTTCTC----ATC-GG-TTT--TC-ATT--gtgtgatcttattcga
gi|26 : agtTACGGTCATA-CAA-GAAGTGTAG-CATGTAAATGTAACAATAACTT--G--A-T
gi|27 : ta-T-GTA-ATTC--T-AAATTTTTC----ATC-GG-TTT---C-TTT--TTC-ACGTTTTA-GTAACA-CTACaat
gi|28 : -TTTTCT-GCCC-TCTGCT-CGCT-GA-CA-----CC--T-GTCAAAG-CTG-AAATTACAA
gi|29 : TATTTTTG---TC-TC-----CCCCTCCATTCA-A-TTCACT-GCCC
gi|3 : cccgatGCT-AA-CA---CCTCAAT--TCTTAA-ACA-AAGTTGTA--GTTTATGTAAAAACAGC-TTAAGTAGCAA-AATGCAAATGT-AGA-----CAA-TGTAGTTATACCAA-CCTCCAATGTAGTCTC-T-TAACCT-CATATTAATGTCATTGAT-GA----TAATT----AAGATAGAATAT-TAGTTTT-AAC-CATGGCTGTG----AA-CGAA-TTCTTTTGAGGCACATATT-GAAT-T-A---ATTATCCGAATTAGAT-TATCT--CGGGTTCTTCATGATATTATACCT-----TACAGTGGTA-ATTCTTTTAAATTTCTCAAAAATCGGG-TTT--TC-TTG--TCCTAC-CTTTA-GTAAC--CTACT
gi|4 : --G--G-TCAGTAAGTAA-A--CATCTTGTGTTTGATTAGCCATT-TTTTGAA-------TAACA-AAGAC-TG-ACT--GT-T--T-------ACA-ACACT-CCAA-TACAAAATA-G--AA-GA--G-A---TC-----TTA-C-ACAC----TTCCTACT-G-AA-TG---TC--AAAT------AACCCTG-AGAGAAGGC--GTCT--------GTG---TCGTATTT--------CCC-----CCCCCCCCTTCA-A-TTCTCT-G-CCCTCTGCT-CGCC-AA-CA---TCTCG-T-GTCATAG-ATG-ACATTACAAGGGTTTTGTAAAA-CA-A-T--AGTA-CAG-A--GAAAa
gi|5 : acggtcatcttattca-TCAGTAAGTAA-A--CATCTTTGGTTTGATGAATTATT-TTTTGAA-------TAAC-----TC-TG-AATTGGTAT--C-------AAA-GTACT-CCAA-TACAAAATATT--AC-GAAGA-A---TCT----TTA-C-ACACT---TT-TTACT-GTAA-TGT--TT--AAAA------AG-CCCG-AGAGAAGGG--A--C--------ATGTGTTCG-ATTTTTGTCTTCTTC-----TTTTTCCCTCCA-A-TTATAT-A-CCCTCCGCT-CGCTAAA-CATTCTCTC--T-GTCATAG-ATGAAAATTACAAtcc
gi|6 : ggtcatcttattcagtaagTTGTAAAA-CA-C-T--AGTAACAG-A--GATATTTTCATA-----CAACT------CTACT----TT-------AG---C-TGTAA--C-----TTT-TGT---TG-T--A----GAATTT---AAGATAAAA-AT-C-GTTTT-A-CAC---GCTGTG----AAGCAAA--TCTT-----ATA---TTT-GATT-TAT---AT--CCAG-ATTATAT-T-TCTACCGGGT--TTCATGAT-TTATAATACCATGTACA-T-ATA-ATTC--TT-AATTTCTC----ATT-GG-TTTCATT-TTC--TCC-ACATTTTGTGTAACt
gi|7 : -TCAGTAAGTAA-T--CATCTTGTGTTTGATTAATTATT-TTTCAAA-------TAACA-GAGAC-TG-CAT--G--T--A---------A-GCACT-CCAA-TACAAAATA-GC-AC-GA--G-A---TC-----TTA-A-AC--------TCTACTAG-AATTGT--TG--AAAT------AGCTCCG-AGAGAAGGG--G--CCA------GTG---TCGTATTTTTG---TCTTCTTTATTTTCCCCCTTCATA-TTTTCT-
gi|8 : cgtgatcttattcaagTATGGTCATA-CAG-GAAGTGTGGGCATGTAAATGTAACTA-AACTC--GTGA-TC-TTA--TCA-A--GATCTTGTATTTGATTAATCATT-TTTCCAAATACATGTAACA-GAGAC-TG-AAT--GT-T--A-------ACT-GCACT-CCAA-TACAAAATA-G--AC--------------------------ACT---T-CCTACT-G-AA-TG---TT--AAAT------AACCC----GAAAAG
gi|9 : aTATGGTCATA-CAG-GAAGTGTGG-CATGTAAATGTAACTATAACTCGTG--A-TC--TTATTCA-A--GATCTTGTATTTGATTAATCATT-TTTCAAATACATG-TAACA-GAGAC-TG-AAT--GT-T--A-------ACT-GCACT-CCAA-TACAAAATA-G--AC--------------------A-C---------TTCCTACT-G-AA-TG---TT--AAAT------A