lowQualScore : 1
lowQualScore : 1 1 1 1 66666666
lowQualScore : . . . . ........
lowQualScore : 7 7 7 8 66666666
consensus : TCTAATACTACGCCGTAAAATATAGTTCC-ATTTAA-GAAGTG-A--------AAGTAGAAAAC
Reference ( gi|10 ) : TCTAATACTACGCCGTAAAATATAGTTCC-ATATAA-GAAGTG-A--------AAGTAGAAAAC
gi|15 : TCCAATACTACGCCATAAAATATAGTTCC-ATATAA-GAAGTG-A--------AAGTA
gi|9 : TCTAATAGTACGCCGTAAAATATAGTTCC-ATATGA-GAAGTG-AAAGTGTTGAAGTAGAAAAC
gi|2 : aaTCTAATACTACACCGTAAAAAATAGTCCC-AT-TAA-GAATAG-A--------AAGTAGAAAACat
gi|3 : aaTCTAATATTACGCCATAAAATATAGTTCC-ATTTAA-GAATTGAA--------AAATAGAGAACatgattggtgatcacaggta
gi|1 : aTCCGGTACTACGCCGTAAAATATAGTTCC-ATTTAA-GAAGTG-A--------AAaggatgggcgatcacagg
gi|17 : cagaaattaatttgtactctgttcggaccacgggccatccaccttatcatgcagaatctaacactagtaTCTAATAATACGCCGTAAAATATAGTTCC-ATATAA-AAAGT
gi|25 : agaaTCTAATACTACGTCCTAAAATATAGTTCC-AT
gi|29 : cataaTCTAATACTACGCCGTAAAATATAG
gi|12 : gcacaaCTAATACTAAGCCGTATAATAGAGTTCC-ATTTAA-GAAGTT-A--------AAGT
gi|4 : gaacTATTACTATGTCGTAAAATATAGTTCC-ATATAA-AAAGTG-A--------AAGTAGAAAAC
gi|13 : TAACACTACGCCCTAAA-TATAGTTCT-ATTTGA-GAAGTG-A--------AAGTAGatgaaatgggtgaccacagtt
gi|7 : taATACTACGTCGTAAAATATAGTTCCGATA-AA-GAAGTG-A--------AAGTAGGAAAC
gi|21 : ATACTACGCCGTAAAATATAGTTTC-ATGAAA-GTAGTG-A--------AAGgtgctgggtgaccacaggtaa
gi|22 : ATACTACACCGTAAAATATAGTTCT-ATTGAA-GATGTG-A--------AAGTc
gi|20 : TACTACGCCGTAAAATATAGTTCC-AT-TAATGAAGTG-A--------AAGTAG
gi|8 : TACTACGCCGTAAAGTATAGTTCC-ATTAAA-GAAGTG-A--------AAGTTGAAAAC
gi|19 : TACTACGCCGTAAAATATAGTTCC-ATTAAA-GAAATG-A--------AAGTAGataatgggtgagcacaggtga
gi|23 : TACTGCGCTGTAAAATATAGTTCC-ATTTAA-GAAGTG-A--------AAGT
gi|16 : TACTACGCCGTAAAGTGTAGTTCC-ATACAT-GAAGTG-A--------AAGTAAA
gi|5 : TACTACTCCCTAAAATATACTTTC-ATTTAA-GAAGTG-A--------AAGTTGAAAAC
gi|6 : ACTGCGCCGTATAATATAGTTCC-ATTTAT-GAAGTG-A--------AAGTAGGAAACgtgatggataaacacaagtaac
gi|24 : TACGCCGTAAAATA--GTTCC-ATTGAA-GAAGTG-A--------AAGTAGatactgggtgatcaccagtactc
gi|28 : GCCCTAAAATGTAGTTCC-ATTTGA-GAAGTG-A--------
gi|26 : CCCTAAAATGTAGTTCC-ATTTGA-GAAGTG-A--------AAGTA
gi|14 : TAAAATATAGTTTC-ATTTAA-GAAGTG-A--------AAGT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AGAATGATAATTTTTACGCTGAAGTATGGATCTGCCACCTTTTCTTGCAG
Unaligned ( gi|18 ): GAAGTATAGTTAGTGCGCTGAAGTAGGACCACGGGACAACCAT
Unaligned ( gi|27 ): GCAGAGGGATGATTTGTACGTGAAGTATCATCCAC
Alignments
lowQualScore : 1 66666666
lowQualScore : . ........
lowQualScore : 7 33333333
consensus : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
Reference ( family-63 ) : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
gi|1 : TCCGGTACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AA
gi|10 : cagaaattaatttgtactctgttcggaccacgggccatccaccttatcatgcagaatctaacactagtaTCTAATACTACGCCGTAAAATATAGTTCCATATAAGAAGTG-A--------AAGTAGAAAAC
gi|12 : CTAATACTAAGCCGTATAATAGAGTTCCATTTAAGAAGTT-A--------AAGT
gi|13 : gaacTAACACTACGCCCTAAA-TATAGTTCTATTTGAGAAGTG-A--------AAGTAG
gi|14 : taTAAAATATAGTTTCATTTAAGAAGTG-A--------AAGT
gi|15 : ctacgcctaaaatatcTCCAATACTACGCCATAAAATATAGTTCCATATAAGAAGTG-A--------AAGTA
gi|16 : TACTACGCCGTAAAGTGTAGTTCCATACATGAAGTG-A--------AAGTAAA
gi|17 : TCTAATAATACGCCGTAAAATATAGTTCCATATAAAAAGT
gi|19 : agaaTACTACGCCGTAAAATATAGTTCCATTAAAGAAATG-A--------AAGTAG
gi|2 : TCTAATACTACACCGTAAAAAATAGTCCCA-TTAAGAATAG-A--------AAGTAGAAAAC
gi|20 : aaTACTACGCCGTAAAATATAGTTCCATTAATGAAGTG-A--------AAGTAGatgattggtgatcacaggta
gi|21 : ATACTACGCCGTAAAATATAGTTTCATGAAAGTAGTG-A--------AAG
gi|22 : ATACTACACCGTAAAATATAGTTCTATTGAAGATGTG-A--------AAGTc
gi|23 : TACTGCGCTGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGT
gi|24 : TACGCCGTAAAATA--GTTCCATTGAAGAAGTG-A--------AAGTAG
gi|25 : TCTAATACTACGTCCTAAAATATAGTTCCAT
gi|26 : cataaCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------AAGTA
gi|28 : GCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------
gi|29 : TCTAATACTACGCCGTAAAATATAG
gi|3 : gcacaaTCTAATATTACGCCATAAAATATAGTTCCATTTAAGAATTGAA--------AAATAGAGAAC
gi|4 : aTATTACTATGTCGTAAAATATAGTTCCATATAAAAAGTG-A--------AAGTAGAAAACaggatgggcgatcacagg
gi|5 : TACTACTCCCTAAAATATACTTTCATTTAAGAAGTG-A--------AAGTTGAAAACatgaaatgggtgaccacagtt
gi|6 : ACTGCGCCGTATAATATAGTTCCATTTATGAAGTG-A--------AAGTAGGAAACgtgatggataaacacaagtaac
gi|7 : ATACTACGTCGTAAAATATAGTTCCGATAAAGAAGTG-A--------AAGTAGGAAACatactgggtgatcaccagtactc
gi|8 : TACTACGCCGTAAAGTATAGTTCCATTAAAGAAGTG-A--------AAGTTGAAAACgtgctgggtgaccacaggtaa
gi|9 : TCTAATAGTACGCCGTAAAATATAGTTCCATATGAGAAGTG-AAAGTGTTGAAGTAGAAAACataatgggtgagcacaggtga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGAATGATAATTTTTACGCTGAAGTATGGATCTGCCACCTTTTCTTGCAG
Unaligned ( gi|18 ): GAAGTATAGTTAGTGCGCTGAAGTAGGACCACGGGACAACCAT
Unaligned ( gi|27 ): GCAGAGGGATGATTTGTACGTGAAGTATCATCCAC
Alignments
lowQualScore : 1 66666666
lowQualScore : . ........
lowQualScore : 7 33333333
consensus : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
Reference ( family-63 ) : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
gi|1 : TCCGGTACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AA
gi|10 : cagaaattaatttgtactctgttcggaccacgggccatccaccttatcatgcagaatctaacactagtaTCTAATACTACGCCGTAAAATATAGTTCCATATAAGAAGTG-A--------AAGTAGAAAAC
gi|12 : CTAATACTAAGCCGTATAATAGAGTTCCATTTAAGAAGTT-A--------AAGT
gi|13 : gaacTAACACTACGCCCTAAA-TATAGTTCTATTTGAGAAGTG-A--------AAGTAG
gi|14 : taTAAAATATAGTTTCATTTAAGAAGTG-A--------AAGT
gi|15 : ctacgcctaaaatatcTCCAATACTACGCCATAAAATATAGTTCCATATAAGAAGTG-A--------AAGTA
gi|16 : TACTACGCCGTAAAGTGTAGTTCCATACATGAAGTG-A--------AAGTAAA
gi|17 : TCTAATAATACGCCGTAAAATATAGTTCCATATAAAAAGT
gi|19 : agaaTACTACGCCGTAAAATATAGTTCCATTAAAGAAATG-A--------AAGTAG
gi|2 : TCTAATACTACACCGTAAAAAATAGTCCCA-TTAAGAATAG-A--------AAGTAGAAAAC
gi|20 : aaTACTACGCCGTAAAATATAGTTCCATTAATGAAGTG-A--------AAGTAGatgattggtgatcacaggta
gi|21 : ATACTACGCCGTAAAATATAGTTTCATGAAAGTAGTG-A--------AAG
gi|22 : ATACTACACCGTAAAATATAGTTCTATTGAAGATGTG-A--------AAGTc
gi|23 : TACTGCGCTGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGT
gi|24 : TACGCCGTAAAATA--GTTCCATTGAAGAAGTG-A--------AAGTAG
gi|25 : TCTAATACTACGTCCTAAAATATAGTTCCAT
gi|26 : cataaCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------AAGTA
gi|28 : GCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------
gi|29 : TCTAATACTACGCCGTAAAATATAG
gi|3 : gcacaaTCTAATATTACGCCATAAAATATAGTTCCATTTAAGAATTGAA--------AAATAGAGAAC
gi|4 : aTATTACTATGTCGTAAAATATAGTTCCATATAAAAAGTG-A--------AAGTAGAAAACaggatgggcgatcacagg
gi|5 : TACTACTCCCTAAAATATACTTTCATTTAAGAAGTG-A--------AAGTTGAAAACatgaaatgggtgaccacagtt
gi|6 : ACTGCGCCGTATAATATAGTTCCATTTATGAAGTG-A--------AAGTAGGAAACgtgatggataaacacaagtaac
gi|7 : ATACTACGTCGTAAAATATAGTTCCGATAAAGAAGTG-A--------AAGTAGGAAACatactgggtgatcaccagtactc
gi|8 : TACTACGCCGTAAAGTATAGTTCCATTAAAGAAGTG-A--------AAGTTGAAAACgtgctgggtgaccacaggtaa
gi|9 : TCTAATAGTACGCCGTAAAATATAGTTCCATATGAGAAGTG-AAAGTGTTGAAGTAGAAAACataatgggtgagcacaggtga
blockSeqs : A AAGTGTTG
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
finalCons : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGAATGATAATTTTTACGCTGAAGTATGGATCTGCCACCTTTTCTTGCAG
Unaligned ( gi|18 ): GAAGTATAGTTAGTGCGCTGAAGTAGGACCACGGGACAACCAT
Unaligned ( gi|27 ): GCAGAGGGATGATTTGTACGTGAAGTATCATCCAC
Alignments
lowQualScore : 1 66666666
lowQualScore : . ........
lowQualScore : 7 33333333
consensus : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
Reference ( family-63 ) : TCTAATACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGTAGAAAAC
gi|1 : TCCGGTACTACGCCGTAAAATATAGTTCCATTTAAGAAGTG-A--------AA
gi|10 : cagaaattaatttgtactctgttcggaccacgggccatccaccttatcatgcagaatctaacactagtaTCTAATACTACGCCGTAAAATATAGTTCCATATAAGAAGTG-A--------AAGTAGAAAAC
gi|12 : CTAATACTAAGCCGTATAATAGAGTTCCATTTAAGAAGTT-A--------AAGT
gi|13 : gaacTAACACTACGCCCTAAA-TATAGTTCTATTTGAGAAGTG-A--------AAGTAG
gi|14 : taTAAAATATAGTTTCATTTAAGAAGTG-A--------AAGT
gi|15 : ctacgcctaaaatatcTCCAATACTACGCCATAAAATATAGTTCCATATAAGAAGTG-A--------AAGTA
gi|16 : TACTACGCCGTAAAGTGTAGTTCCATACATGAAGTG-A--------AAGTAAA
gi|17 : TCTAATAATACGCCGTAAAATATAGTTCCATATAAAAAGT
gi|19 : agaaTACTACGCCGTAAAATATAGTTCCATTAAAGAAATG-A--------AAGTAG
gi|2 : TCTAATACTACACCGTAAAAAATAGTCCCA-TTAAGAATAG-A--------AAGTAGAAAAC
gi|20 : aaTACTACGCCGTAAAATATAGTTCCATTAATGAAGTG-A--------AAGTAGatgattggtgatcacaggta
gi|21 : ATACTACGCCGTAAAATATAGTTTCATGAAAGTAGTG-A--------AAG
gi|22 : ATACTACACCGTAAAATATAGTTCTATTGAAGATGTG-A--------AAGTc
gi|23 : TACTGCGCTGTAAAATATAGTTCCATTTAAGAAGTG-A--------AAGT
gi|24 : TACGCCGTAAAATA--GTTCCATTGAAGAAGTG-A--------AAGTAG
gi|25 : TCTAATACTACGTCCTAAAATATAGTTCCAT
gi|26 : cataaCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------AAGTA
gi|28 : GCCCTAAAATGTAGTTCCATTTGAGAAGTG-A--------
gi|29 : TCTAATACTACGCCGTAAAATATAG
gi|3 : gcacaaTCTAATATTACGCCATAAAATATAGTTCCATTTAAGAATTGAA--------AAATAGAGAAC
gi|4 : aTATTACTATGTCGTAAAATATAGTTCCATATAAAAAGTG-A--------AAGTAGAAAACaggatgggcgatcacagg
gi|5 : TACTACTCCCTAAAATATACTTTCATTTAAGAAGTG-A--------AAGTTGAAAACatgaaatgggtgaccacagtt
gi|6 : ACTGCGCCGTATAATATAGTTCCATTTATGAAGTG-A--------AAGTAGGAAACgtgatggataaacacaagtaac
gi|7 : ATACTACGTCGTAAAATATAGTTCCGATAAAGAAGTG-A--------AAGTAGGAAACatactgggtgatcaccagtactc
gi|8 : TACTACGCCGTAAAGTATAGTTCCATTAAAGAAGTG-A--------AAGTTGAAAACgtgctgggtgaccacaggtaa
gi|9 : TCTAATAGTACGCCGTAAAATATAGTTCCATATGAGAAGTG-AAAGTGTTGAAGTAGAAAACataatgggtgagcacaggtga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGAATGATAATTTTTACGCTGAAGTATGGATCTGCCACCTTTTCTTGCAG
Unaligned ( gi|18 ): GAAGTATAGTTAGTGCGCTGAAGTAGGACCACGGGACAACCAT
Unaligned ( gi|27 ): GCAGAGGGATGATTTGTACGTGAAGTATCATCCAC