lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222
lowQualScore : 4 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 4 55 1 2 11 11 1 222222 1 2222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 11111 222 1 22 11 2 11 3333333333333 222222 11 33333 222 1 1111111111111111111111111111111111 1 1 1 11 11 99999999999999999999 333333333333333 44444444444 11 2222222222222 22222 11 111 11 111 11111 555555555555555555555555555555555555555555555555 22222222222222 222 55555555555 1111 111111 1111111 111111111 11111 3333333333333 33333333 11 11111 9999999999999999999999999999999
lowQualScore : 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 7 0 55 3 0 88 88 3 0 333333 1 2222222 6 99 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 6 6 99999 77 11111 6 222 0 66 11 22 88 1 8 8 0 0 44 3 0000000000000 444444 00 2 0 33333 333 3 1111111111111111111111111111111111 3 0 0 22 22 99999999999999999999 3 8 0 8 8 444444444444444 8 8 44444444444 11 8 99 8 5555555555555 00000 1 8 0 8 0 33 666 11 444 88 999 33333 999999 22 2 2 4 11 222222222222222222222222222222222222222222222222 44 3 22222222222222 8 5 2 000 5 5 00000000000 88888 9999 5 5 77 1 5 555555 77 5 3333333 5 555555555 5 44444 7 0 8888888888888 888 4 44444444 1 5 11 5 5 55555 5 5 8888888888888888888888888888888 6
lowQualScore : . . ................................................................................... . . . . .. . . .. .. . . ...... . ....... . .. ................................................................................................................................................. . . . . ..... .. ..... . ... . .. .. .. .. . . . . . .. . ............. ...... .. . . ..... ... . .................................. . . . .. .. .................... . . . . . ............... . . ........... .. . .. . ............. ..... . . . . . .. ... .. ... .. ... ..... ...... .. . . . .. ................................................ .. . .............. . . . ... . . ........... ..... .... . . .. . . ...... .. . ....... . ......... . ..... . . ............. ... . ........ . . .. . . ..... . . ............................... .
lowQualScore : 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 00 3 3 33 33 3 8 000000 8 0000000 7 22 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 7 7 7 33333 99 00000 7 000 4 66 00 88 88 0 0 0 4 8 66 2 0000000000000 555555 88 5 2 33333 333 3 0000000000000000000000000000000000 3 0 0 55 55 22222222222222222222 2 8 8 0 0 222222222222222 0 0 22222222222 00 0 88 0 2222222222222 00000 8 0 8 0 6 88 888 00 000 66 222 11111 888888 88 0 2 7 66 222222222222222222222222222222222222222222222222 66 3 99999999999999 0 0 2 666 0 0 55555555555 55555 4444 7 7 99 1 7 111111 11 7 3333333 7 111111111 7 33333 3 7 3333333333333 888 5 99999999 0 0 99 7 7 44444 0 0 3333333333333333333333333333333 7
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAA-AAA--ACC--TC-CAAAATGTAGAT------CCGCCACTT-----T-CGCATTT-CT--ATTAT-----------A-G--------A-------CAT--A------GACATNA--------CG-----------------TCAC--------ACATCTTT-CT--T--TCA--------------------CGTA--------------A-GCTTG-AGGCT-AGG-C-T---A--ATGAT--G--CA-CTG---TATTTTTNGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCA-CTTTTAAAA------AGT----ACACAAAC---TCGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T---GCGGGAAA-TGCGA----CGA------GTGCGTT-CTGT-GACG-TT-GTT-CAATAT---NTGA-GTTAA------TTTACGTAAGTTAAATGTACCAAGTGTGTTT-CTGGAGTACCTTTTAT-CAA-C--NTT-------TTT-TT-TT--C---AAA--TATGG--GAA-ACATAATTTAAAGGG-GAAA-AAA-TATTT-GTGG-TGATA-----CGG-TATT-ATTTTTG--TTTTCCA--NTATG--AC---TTC-GTCTGGATCA-TCCCGACGTTT---G-TGT------A--T-A-CG-CTGACTC----------G---T--------CT----C---G--------------A--CGT-C-GT-------GG--TGATCCAGA-CTA-ACGC---TGA-C-TG-T-----A-ATGTAGT--CA-G----CCAT-TT-TT--GACAAGGGACTTCT-GGGAT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TNC-TTG-TTAAA-G-----GTTGGAG---TTCN---GTCACT---TCCTTT-TA--CN-CTCG-CA--TTA-GT-C-ATT-AGAGC-TC-GCAGTGCG----AG-C--AGCG--T-----CG-----CGCTGGC-TCGCTGCGCTC
Reference ( gi|2 ) : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGT--AATTAAAA---CTAATGA----CCTTATA-TATTTCA---TG------CTGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT------CCGCCTCTT-----T-CGCATTT-CT--ATTAT-----------A-G--------A-------CAT--A------GACATCA--------CG-----------------TCAC--------ACATTTTT-CT--T--TC---------------------CGTT--------------A-GCTTG-AGGCT-AGG-C-T---A--ATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCT-CTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T---GCG------TTC------TGC------GTGCGTT-CTGT-GACG-TT-GTT-CAATAC---GTAA-GTTAAA-----TTTACGTAAGTTAAATGTACCAAGTGTGTTT-CTGGAGTACCTTTTAT-CAA-C--GTT-------TTT-TT-TT------AAA--TATGG--GAA-ACATAATTTAAAGGG-AAAA-AAA-TATTT-GTG--TGATA-----CAG-TATT-ATTTTTG--TTTTCCA--ATATG--AC---TTC-GTCTGGATCA-CTCCGACGTTT---T-TGT------A--T-A-CG-CTGACTC----------G---T--------CT----C---G--------------A--CGT-C-AT-------GG--TGATCCAGA-CTA-ACGC---TGA-C-TG-T----CA-ATGTAGT--CA-G----CCAT-TT-TT--GACAAGGGACTTCT-GGAAT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TAT-TTG-TTAAA-G-----GCTGGAA---TTTA---TTTACT---TCCTTT-TA--CG-CTCG-CA--TTA-GT-C-ATT-AGAGC-TC-GCAGTGGG----AG-C--A-----------CG-----CGCTGGC-TCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|4 : GACGC-TGAAAAAAA-AAA--ACT--TC-CAAAATGT-GAT------CCGCCACTT-----T-CGCATTT-CTCTATTAT-------------G--------A-------CGCCAA------TACATCAGCTACTGACG-----------------TCAC--------ACATCTTT-CT--T--TCATCAGCACAATCACAATGTTTCGTA--------------A-GCTTG-AGGCT-AGG-CCT---A--ATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCAC-AAATCCA-CTTTTAAAA------AGT----ACACAATC---TTGG-GCTTGCAAGTT-----TAGTTGA---ATA-ATT---T---GCGGGAAAATGCAA----CGA------GTGCCTT-CTGT-GACG-TT-GTT-CAATATTGGATGACGCT--------TTTACGTAAGTTAAATGTACCAAGTGTGTTT-CTGGAGTACCTTTTAT-CAA-CTTTTT-------TTT-TT-TT------AAT--TATGG--GAA-ACATAATTTAAAGGG-GGAA-AAA--AATT-GTG--TGATA-----CGG-TATT-ATgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : tgatGACGCCTGAAAAAACAAAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTT-----TTCGCATTTTCT--ATTATCGA--------A-G--------A-------CCT--AAACTAAGACATGAA-------CG-----------------TCACTAACTCGTACATTTTTTCT--TGCTC---------------------CGTA--------------A-GCTTG-AGGCT-AGG-C-T---ATCATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAA-TCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT---GGGGAAAA-TGCAA----CGA------GTGCGTTGCTGTTGACG-TTTGTTTCAATAT---CTGG-ATGAACCGGCTTTTACGTAAGTCAAATGTACCAAGTGTGTTT-CTGGAGTACCTTTTAT-CAA-C--GTTATTGAGGTTTGTT-TTACC---AAA--TATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTATTT-GTGGCTGATAATTACTAGATATTAATTTTTGTATTTTCTA--TTATGATAC---TT--GTCTGGATCA-CCCGAACGTTT---T-TGT------A--T-A-CG-CTGACTC----------GAGCT--------CT----A---A--------------A--CGT-CGAT-------GG--TGATCCAGACCTA-CTGC---TGA-C-TG-------A-CTGTAGTTCCA-GGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTG-TAT--------GA-G-----AATGTAA---TTGAGGGTTTACC---TACTTT-
gi|5 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatGAGGC-TGGGAAAAATAAACCACC--TCGCAAAATGTAGAT------CCGGCACTTGAAAAT-CGCATTT-CT--ATTATGAGCAATACCTA-G--------A-------CAT--G------GACGTCA--------CACTAGATCATCTACACAATCAC--------GAATGTTT-CG--T--ACA--------------------TGTA--------------AAGCTTGCAGGCTTAGG-CCT---A--ATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGCAA--CAATGCAA-GGGATCT-AGGGAGGCCAC-AAATCCA-CTTTTaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|14 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtAAAATGTAGAT------CCGCCACTT-----C-CGCATAT-TC--ATTAC-----------ATGATACCAATA-------CAT--A------GACATGA--------CC-----------------CCAC--------ACATCTTT-CT--T--TCAA-------------------CATTTTA-----------A-ACTTG-AGGCT-AGG-C-CTTAA--ATGAT--G--CA-
gi|19 : gAATGTAGAT------CCGCCACTT-----T-CGCATTT-CT--AT-------------------------A-------C------------ACATTA--------CG-----------------TCAC--------ACATCTTT-CTTGT--TT---------------------CATA--------------A-GTTTG-AGGCT-AGG-C-C---A--
gi|6 : T-CT--ATTAT-----------G-G--------AAGATATCCAT--A------GACATGA--------CG-----------------TCAC--------ACATCTGT-CT--T--TCAGCAA----------------CGTTTGCAAATTTTGTTAA-ACTTG-AGGCT-AGACC-T---A--ATGAT--A--CA-CTG---TATTTTTGGATCG--GAGCAT--CTTTGCAA-GGGAACT-A-CAA-ATCACACGATCTT-C
gi|20 : ---A--ATAGT--G--CA-CTG---TATTTTTGGATCG--GAGCAA--CTTTGCA----------AGGGA-GCCAC-ACATTCA-CGT-----A------AAT----ACACA-------TGT-ACTTGGACgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|3 : AAA------AGT----ACACAAACGTATTGCGACTTGCACGTT-----TAGTTGA---AGATACT---TATTGCG------G-CGAAAAATGCAAACGAGTGCGTT-CTGT-GACGCTT-GTT-CAATA----------TTGGA-----TG-ACGCTTTTTAAATGTACCAAGTGTGTTTTCTGGAGTAC-TTTTAT-AAAAC--TTT-------TTT-TT-TT------AAT--TATGG--AAACATATAATTTAAAGGG-AAAA-AA--TATTTTGTGG-TGATA-----CAG-T----------------TCCACTATATG--AC---TTCCGTCTGGATCAACCCCGACGTTT---T-TGT------A--TCA-CG-CTTACTC----------G---T--------CT----C---G--------------A--CGT-C-AT-------GG--TGATCCAGAGCTA-ACACA--TGACC-TG-C----TG-A--TAGT--CA-GAGC-CCGTGTT-TT--GACAA-GGACTTCT-GGGAT-TGTG-ATT-TGGTG--CATAAAAACTTT-TAC-TTG-TTAAAGG-----GTTGGAGATTTTTA---ATCACTTCCTCCTTC-TAC-CG-CTCGACAG-TTA-GTCC-ATTCAGAGC-T--GCAGTGCG----AG-C--c
gi|12 : T-GACG-CT--TT----TAC---GTAA--TTAA------CTTACGTAA-----ATGTAACTATTGTGTTT-CTGGAGTACCTTTTAT-CA------TT-------TTT-TT-TTCTCTTCAAAT-TACGG--GAA-ACATAATTTAAAGGG-GAAca
gi|11 : tgttcaattggaATGTACCAAGTGTGTTT-CTGGAGTACCTTTTATGAAA-T--ATT-------TTT-TTCTT------CAAGTTATGG--GAA-CCATAATTTGAAG-----------------------------------G-TATT-ATTTTTG--TTTTCCA--CTATG--AC---TTC-GTCTGGATTA-TCCCGACGTTT---T-TGT------A--T-
gi|7 : AA-AAA-GATTT-GTG--TGATA-----CGG-TATT-AGTTTTG--TTTTCCA--CTCTG--AC---TTC-GTCTGGATCA-TCCCGACGTTT---T-TGT------A--T-A-CG-CGGACTC----------G---T--------CT----C---G--------------A--CGT-C-GT-------GA--TAATCCAGA-CTA-ACGC---TGA-C-TG---------ATGTATT--CA-G----CCAG-TT-TT--GACAAGGGACTTCT-GGGAT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTC-TTG-ATAAA-G-----GTTGTAG---TTCT---GTCACT---T--TTT-----CC-CACG-CA--TTA-GT-C-ATT-AGAGC-TC-GCAG-GG-----------------------CG-----CGCTGGC-TCGCTGTGCT
gi|8 : --ATACG--ACAAGTTA-GTTTGGATCA-TCCCGACGTTT---G-AGT------A--T-A-CG-Ct
gi|15 : catctcgaggtttgtgtatacgccgactctccacaaattgtg-GTCTGGATCA-TTCCGACGATT---A-TGTACATACA--T-A-CG-A-GAGTC----------G---T--------ATA---CACAA--------------A--CGT-C-GG-------GA--TGATCCgatatatagtggcatttagcgacaacagaccatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
gi|23 : -GTCTGGATCA-TCCCGACGTTT---G-TGT------A--T-A-C--TTCA--C----------G---T--------TT----CA--G--------------A--GGT-C-Atatacattatgactgtatggcggcgtagtaaggccaaatatttgg
gi|22 : catccctgacgttttgtgtatacgc-GTCTGGATCA-TCCCGACGTTT---G-TGT------ATGT-A-CG-C
gi|34 : gtttgtgtatacgcctactctccacaaacgacgtttgtg-GTCTGGATCA-TCCCGACGTTT---G-TGT------A--T-
gi|18 : -GTCTGGATCA-TTCCGACGATT---A-TGTC-----A--T-A-Cta
gi|26 : catcccgacgttgtgtataacgatctcgtat-GTCTCGATCA-TCCAGACGTTTGTCT-TATC-----A--T-A-CGAATGA-------------G-------------T----C---G--------------AAGCGT-T-TT-------GA--TGATCAAGA-Cttacattaatgactgtatggc
gi|30 : TCTGGATCA-TCCCGACGCTT---G-TGA------A--T-A-CG-Cta
gi|32 : aaacgtgCTGGATCA-CCCCGACGTTT---G-TGT------A--T-A-CG-CCGACTC----------
gi|17 : TGGATCA-TCCCGACGTTT---TTTGT------A--T-A-CG-CTGACTC----------G---T--------CT----C---G--------------A--CAT-C-AT-------GG--TGATCCAGA-TTA-ACGC---TGA-C-TGATATA-CA-TTGTAGT--CA-G----CCAT-TT-TT--GACAAGGGACT
gi|24 : TGGATCA-TCCCGACGTTT---G-AGT------A--T-A-CG-C
gi|15 : atctcgaggtttgtgtatacgccgactctccacaaatttgGGATCA-TCCCGACGTTT---G-TGT------A--T-A-CGACT--CTC----------G---T--------AT----G---T--------------A--TGTAC-ATAATCGTCGGAATGATCCAGA-CTATACATTA-TGA-C-TG-TATGGCG-GCGTAGT--AAGG----CCA
gi|8 : CA-TCTCGAGGTTT---G-TGT------A--T-A-CG-CCGACTCTCCACAAATTG---TGGCGTATACT----CA--A--------------A--CGT-C-GG-------GA--TGATCCAAA-CTA-AC-T---TGT-CGTA-T----GATATATAGT-----G----GCAT-TTAGC--GACAACAGACaatatttgg
gi|18 : CA-TCCCGACGTTG---T--GT------A--T-AACG-AT--CTC----------G---T--------ATGTA-T---G--------------A--CAT-A-ATCGTC---GGAATGATCCAGA-CTT-ACATTAATGA-C-TG-T----catgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
gi|23 : -CCCTGACGTTT---TGTGT------A--T-A-CG-CTGACC---------------T--------CTGAAAC---GTGAAGTATACACAAA--CGT-C-GG-------GA--TGATCCAGA-Catggc
gi|24 : catCGAGGTTT---G-TGT------A--T-A-CG-CCGACTC----------
gi|9 : atctTC----------G------------CT----C---G--------------A--CGT-C--T-------AA--TGATCCAGA-CTA-AAGC---TGA-C-TG---------ATGTCGT--CA-G----TCAT-TT-TT--GACA-GGGA-TTCT-GGGAT-TG-GGATT-TGGTGA-CAACAAA--TTT-T-T-CTGTTTAAA-G-----GTTGTAG---TTCT---GTCACT---TACTTT-T----T-CCCG-CA--Ttccacaaatttggcgtatactcaaacgtcgggatgatcca
gi|13 : gGTAGT--CT-G----CCAT-TT-TA--GGCAAGGAA--------AAT-----------GGTGA-CA-AAAA--TTT-TAC-TTC-TTAAA-GCTTTAGTTTGAA---TTCT---GCCACT---TCCTTT-TA--CG-CTTG-CA--TTA-GT-C-AAA-AGACC-TA-GCAGCGggagt
gi|10 : AGGGACCTCT-GGGAA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTC-TTG-TAAAA-G-----GTTGGAGC--TCTA----TCACT---TTCTTT-TC--CC-CGCA-AA--TTA-GT-C-----AGAGC-TC-ACAATGCG----AGAC--AGCGATT-----CG-----CGCTGGC-TTGCTGCGCctc
gi|16 : ACCTCT-GGAAT----G-ATT--GGTGA-CATTA----TTT-CTTCTTG-T-AAA-A-----GTTGGAA---GT---------CT---ACATTT-T------CCCG-CAAATTA-GT-C-A------AC-TC-ACAATGCG----AGAC--AGCGTAT-----CG-----CGCTGGC-TCGgt
gi|1 : TA---ATCACT---TCCTTTATAAACGGCTCG-CA--TTATGT-CCATT-AGAGCCTCAGCAGTAAGCCCGAG-C--C-----------AG-----CGCTGGCTTCGCCTCGCtg
gi|28 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttg-CTCG-CA--TTA-GT-C-ATT-AGAGC-TC-GCAATGCG----AG-CCAG-----------CGCTTCTCGCTGGT-TCGCTGCGCTC
gi|29 : -AGAGC-TC-GCAGTGCG----AGCC--AGCGCTTCGCTTCG-----CGCTGGC-TCCCTGCGCTCg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|25 ): CATTCCAACGTTTGTGTATGCGCCGACTCTCCACAAAGTGGTGTATACACAAACGGCGGGATGATC
Unaligned ( gi|27 ): CTGGCCATTATCCCGACGTTTGTTATACATACATGTAATTAATATCGGGATTATCCCAGACTA
Unaligned ( gi|31 ): TCTGGGACGATCCCGACGTTTGTGTATACGGAGACT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444 2222 11 222 2222 1 222 222222 1 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222 11 11 1 1111 11111 88888888888888888888888888888888888 111 333333333333333333333333333333333333 9999999999999999999999999999999999999999999999 22222 111 22 1 222222 1111 111 11 222222 1 3333333333 222 1 555555555555555555555 1111 2222222222222222 111 11 111 222 1111 11 11111 777777777777777777777777777777777777777777777777777777777777777777777777 111 444444444444 1111 1 1 11111 1111 222222222 11 1 55555555555555555
lowQualScore : 5 5 222222222222222 4444 88 2 111 3333 5 000 999999 3 2 4 5 88 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 111 33 33 0 99 6 4444 66666 6 77 77777777777777777777777777777777777 77 222 888888888888888888888888888888888888 5555555555555555555555555555555555555555555555 5 5 5 11111 66 88888 5 888 7 00 99 6 6 8 0 6 0 333333 7777 11 444 2 8 33 888888 0 1111111111 44 8 333 8 6 3 6 6 6 444444444444444444444 3 2 6 77 0 2222 5 0 0000000000000000 5 555 999 22 99 6 9 6 666 6 000 4444 99 6 11 1 22222 4 55 1 1 1 1 3333 22 3 4 1 000000000000000000000000000000000000000000000000000000000000000000000000 44 0 3 6 4 0 888 4 111111111111 5 66 9999 5 5 66 5 6666 5 55 5 1 3 66 1 1 1 5 44444 1111 1 888 1 777777777 4 00 5 0 888 4 4 9999 88888888888888888 5
lowQualScore : . . ............... .... .. . ... .... . ... ...... . . . . .. .................................................................................................................... . ... .. .. . .. . .... ..... . .. ................................... .. ... .................................... .............................................. . . . ..... .. ..... . ... . .. .. . . . . . . ...... .... .. ... . . .. ...... . .......... .. . ... . . . . . . ..................... . . . .. . .... . . ................ . ... ... .. .. . . . ... . ... .... .. . .. . ..... . .. . . . . .... .. . . . ........................................................................ .. . . . . . ... . ............ . .. .... . . .. . .... . .. . . . .. . . . . ..... .... . ... . ......... . .. . . ... . . .... ................. .
lowQualScore : 5 5 555555555555555 5555 55 5 000 5555 0 000 000000 0 5 0 5 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 88 88 0 22 7 2222 77777 7 99 66666666666666666666666666666666666 99 444 333333333333333333333333333333333333 0000000000000000000000000000000000000000000000 7 7 7 22222 99 00000 7 333 5 77 22 7 7 0 6 0 8 000000 0000 88 000 8 0 88 888888 0 5555555555 66 0 222 0 7 3 7 7 7 555555555555555555555 2 5 7 99 7 1111 7 7 1111111111111111 7 777 666 00 22 7 3 7 333 7 000 2222 22 7 00 0 00000 4 66 8 8 8 8 9999 55 6 2 6 222222222222222222222222222222222222222222222222222222222222222222222222 11 3 1 7 0 9 333 4 444444444444 0 99 4444 0 0 99 0 4444 0 11 0 6 4 99 4 0 7 7 33333 7777 0 888 4 222222222 4 66 0 0 111 4 4 4444 88888888888888888 7
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAA-ACAAA--ACC--TC-CAAAATGTAGA--TCC-GCCAC----TT-----TCGCA-TTTCT--ATTAT-------A-G--------A-------CAT------AG--ACAT-G-ACGTCAC--------AC---------------A-TC-------TTTCTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCCT---A--ATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGC--AACAATGCAA-GGGA-TCTAGGGA-GCCACAAAATCCACTTTTAAA------AAGT----ACACAAAC---TTGT-ACTTGCACGT--TTAGT------TGAAGA-ATT---T------GCGGGAAA-TGCAA-CGAGTGCGTT-CTG-TGACG-TTG-TTC-AAT-ACG---TGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-GT----A--T-ACG-CCGACT--------------C----------G---T--------CT----C-G--------------A----------CGTCG-TGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG-T-----T--CGCGCTGGC-TCGCTGCGCTC
Reference ( family-6261 ) : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAA-A-AAA--ACC--TC-CAAAATGTAGA--TCC-GCCAC----TT-----TCGCA-TTTCT--ATTAT-------A-G--------A-------CAT------AG--ACAT-N-ACGTCAC--------AC---------------A-TC-------TTTCTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGC-T---A--ATGAT--G--CA-CTG---TATTTTTNGATCGA-GAGC--AACAATGCAA-GGGA-TCTAGGGA-GCCACAAAATCCACTTTTAAA------AAGT----ACACAAAC---TCGT-ACTTGCACGT--TTAGT------TGAAGA-ATT---T------GCGGGAAA-TGCGA-CGAGTGCGTT-CTG-TGACG-TTG-TTC-AAT-ATN---TGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCANTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-GT----A--T-ACG-CTGACT--------------C----------G---T--------CT----C-G--------------A----------CGTCG-TGGTGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-NCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG-------T--CGCGCTGGC-TCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|1 : GACGCCTGAAAAAACA-AAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTTT-----TCGCATTTTCT--ATTATCGA----A-G--------A-------CCTAAACTAAG--ACATGA-ACGTCACTAACTCGTAC---------------ATTT-------TTTCTTGCTC----------------------CG---T--------------AA-GCTTG-AGGCT-AGGC-T---ATCATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAATCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT------GGGGAAAA-TGCAA-CGAGTGCGTTGCTGTTGACGTTTGTTTC-AAT-ATC---TGG-ATG-AACCGGCTTTTACGTAAGTCA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTTATTGAGGTTTGTT---TTACCAAA-TATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTATTT-GTGGCTGATAATTACTAGATATTAATTTTTGTATTTTCTATTAT--GATACTT--GTCTGG--ATCA-CCCG-AACGTTT-TT-GT----A--T-ACG-CTGACT--------------C----------GAGCT--------CT----A-A--------------A----------CGTCGATGGTGAT-CCAGACCTA-CTGC---TGA-CTG---A----C---TG-TAGTTCCAGGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatTCACT---TCCTTTATAAA-CGGCTCG-CA--TTATGTCCATT-AGAGCCTCAGCAGTAAGCCCGAG-C---CA-----------GCGCTGGCTTCGCCTCGCgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|10 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaaAGGGACCTCTGGG-AA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTCTTGTAAAA-G-----GTTGGAG---CTCTATCACT---TTCTTT-T--C-C-CCGCA-AA--TTA-GT-C----AGAG-CTC-ACAATG----CGAGAC-AGCGAT-----T--CGCGCTGGC-TTGCTGCGC
gi|11 : A--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATGAAAT-ATT-------TTT-TTC--TT--CAAGTTATGG--GAA-CCATAATTTGAA------------------------------------GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATTA-TCCC-GACGTTT-TT-GT----A--T-gt
gi|12 : -TGACG-CT--TT----T-ACG---TAA--TT-AA------CTTACGTAA------A--TGTAACTATTGTG----TTT-CTGGAGTACCTTTTAT-C-AT-TTT-------TTT-TTCTCTT--CAAATTACGG--GAA-ACATAATTTAAAGGGGAA
gi|13 : tgttcaattggaG-TAGT--CTG----CCAT-TT-TA--GGCAAGGAA---------------A-AT---GGTGA-CA-AAAA--TTT-TACTTCTTAAA-GCTTTAGTTTGAA---TTCTGCCACT---TCCTTT-T--A-C-GCTTG-CA--TTA-GT-CAAA-AGAC-CTA-GCAGCG----C
gi|14 : AAAATGTAGA--TCC-GCCAC----TT-----CCGCA-TATTC--ATTAC-------ATGATACCAATA-------CAT------AG--ACAT-G-ACCCCAC--------AC---------------A-TC-------TTTCTT--TCAA--------------------CATTTT--------------AA-ACTTG-AGGCT-AGGC-CTTAA--ATGAT--G--CA-tc
gi|15 : gGG--ATCA-TCCC-GACGTTT-GT-GT----A--T-ACGACT--CT--------------C----------G---T--------AT----G-T--------------ATGTACATAATCGTCG-GAATGAT-CCAGA-CTATACATTA-TGA-CTG-T-A----
gi|16 : ACCTCTGGA-AT----G-ATT--GGTGA-CATTA----TTTCTTCTTGT-AAA-A-----GTTGGA-------AGTC--T---ACATTT-T-------CCCG-CAAATTA-GT-CA------A-CTC-ACAATG----CGAGAC-AGCG-------TATCGCGCTGGC-TCGtggcggcgtagtaaggccaaatatttgg
gi|17 : TGG--ATCA-TCCC-GACGTTT-TTTGT----A--T-ACG-CTGACT--------------C----------G---T--------CT----C-G--------------A----------CATCA-TGGTGAT-CCAGA-TTA-ACGC---TGA-CTGAT-AT---ACATTG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTtg
gi|18 : CA-TCCC-GACG-TT-GT-GT----A--TAACG-AT--CT--------------C----------G---T--------ATGTA-T-G--------------ACATAAT----CGTCG-GAATGAT-CCAGA-CTT-ACATTAATGA-CTG-T-A----
gi|19 : AATGTAGA--TCC-GCCAC----TT-----TCGCA-TTTCT--AT---------------------A-------C------------ACAT-T-ACGTCAC--------AC---------------A-TC-------TTTCTTG-TT-T--------------------CA---T--------------AA-GTTTG-AGGCT-AGGC-C---A--tggc
gi|2 : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGTAA--TTAAAAC---TAATGA----CCTTATA-TATTTCA---TGC------TGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAA-ACAAA--ACC--TC-CAAAATGTAGA--TCC-GCCTC----TT-----TCGCA-TTTCT--ATTAT-------A-G--------A-------CAT------AG--ACAT-C-ACGTCAC--------AC---------------A-TT-------TTTCTT--TC----------------------CG---T--------------TA-GCTTG-AGGCT-AGGC-T---A--ATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGC--AACAATGCAA-GGGA-TCTAGGGA-GCCACAAAATCCTCTTTTAAA------AAGT----ACACAAAC---TTGT-ACTTGCACGT--TTAGT------TGAAGA-ATT---T------GCG------TTC---TGCGTGCGTT-CTG-TGACG-TTG-TTC-AAT-ACG---TAA-GTTAAA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTT-------TTT-TT---TT---AAA-TATGG--GAA-ACATAATTTAAAGGGAAAAA-AA--TATTT-GT-G-TGA----TAC--AGTATT-ATTTTTG--TTTTCCAATAT--G--ACTTC-GTCTGG--ATCA-CTCC-GACGTTT-TT-GT----A--T-ACG-CTGACT--------------C----------G---T--------CT----C-G--------------A----------CGTCA-TGGTGAT-CCAGA-CTA-ACGC---TGA-CTG-TCA----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGA-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TATTTGTTAAA-G-----GCTGGAA---TTTATTTACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----GGAG-C-A-------------CGCGCTGGC-TCGCTGCGCTC
gi|20 : ---A--ATAGT--G--CA-CTG---TATTTTTGGATCG--GAGC--AACTTTGCA----------AGGGA-GCCAC-ACATTCACGT-----------AAAT----ACACA-------TGT-ACTTGGAC
gi|22 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-GT----ATGT-ACG-Cc
gi|23 : gtttgtgtatacgcctactctccacaaacgacgtttgtgCA-TCCCTGACGTTTTGT-GT----A--T-ACG-CTGACC-----------------------------T--------CTGAAAC-GTGAAGTATACACAAA----------CGTCG-GGATGAT-CCAGA-C
gi|23 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-GT----A--T-AC
gi|24 : catccctgacgttttgtgtatacgctgacctctgaaacgtgaaA-TCTC-GAGGTTT-GT-GT----A--T-ACG-CCGACTCTCCACAAATTTGGC----------G---TATA-----CT----CAA--------------A----------CGTCG-GGATGAT-CCA
gi|24 : TGG--ATCA-TCCC-GACGTTT-GA-GT----A--T-ACG-C
gi|25 : atctcgaggtttgtgtatacgccgactctccacaaatttgCA-TTCC-AACGTTT-GT-GT----A--T-GCG-CCGAC------------------------------T--------CT----C-C--------------A----------CAAAG-TGGTG
gi|25 : G--ATCA-TCCC-GCCGTTT-GT-GT----A--T-ACA-Ctatacacaaacggcgggatgatc
gi|26 : cattccaacgtttgtgtatgcgccgactctccacaaagtg-GTCTCG--ATCA-TCCA-GACGTTT-GT-CTTATCA--T-ACGAATGA---------------------------G-------------T----C-G--------------AAG--------CGTTT-TGATGAT-CAAGA-C
gi|27 : CTGGCCATTA-TCCC-GACGTTT-GT--T----A--T-ACA-T--ACA--------------T----------G---TA-------AT----T-A--------------A----------TATCG-GGATTATCCCAGA-CTA-ta
gi|28 : CTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAATG----CGAGCC-AGCGCT-----T--CTCGCTGGT-TCGCTGCGCTC
gi|29 : -AGAG-CTC-GCAGTG----CGAG-CCAGCGCTTCGCTT--CGCGCTGGC-TCCCTGCGCTCg
gi|3 : AA------AAGT----ACACAAACGTATTGCGACTTGCACGT--TTAGT------TGAAGATACT---TATTGCGGCGAAAAA-TGCAAACGAGTGCGTT-CTG-TGACGCTTG-TTC-AAT-ATT---GGA---T-GACGC---TTT-------TTA-AA--TGTACCAAGTGTG----TTTTCTGGAGTAC-TTTTAT-AAAA-CTT-------TTT-TT---TT--TAAT-TATGG--AAACATATAATTTAAAGGG-AAAA-AA--TATTTTGTGG-TGA----TAC--AGT----------------TCCACTATATG--ACTTCCGTCTGG--ATCAACCCC-GACGTTT-TT-GT----A--TCACG-CTTACT--------------C----------G---T--------CT----C-G--------------A----------CGTCA-TGGTGAT-CCAGAGCTA-ACACA--TGACCTG-C----------TGATAGT--CAGAGC-CCGTGTT-TT--GACAA-GGACTTCTGGG-AT-TGTG-ATT-TGGTG--CATAAAAACTTT-TACTTGTTAAAGG-----GTTGGAGATTTTTAATCACTTCCTCCTTC-T--ACC-GCTCGACAG-TTA-GTCCATTCAGAG-CT--GCAGTG----CGAG-C-g
gi|30 : TCTGG--ATCA-TCCC-GACGCTT-GT-GA----A--T-ACG-Cca
gi|31 : aaacgtgTCTGGG-ACGA-TCCC-GACGTTT-GT-GT----A--T-ACG-GAGACT--------------
gi|32 : CTGG--ATCA-CCCC-GACGTTT-GT-GT----A--T-ACG-CCGACT--------------C----------
gi|34 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-GT----A--T-
gi|4 : GACGC-TGAAAAAA-A-AAA--ACT--TC-CAAAATGT-GA--TCC-GCCAC----TT-----TCGCA-TTTCTCTATTATGACGCCAA-T--------A-------CATC-----AGCTAC-T-G-ACGTCAC--------AC---------------A-TC-------TTTCTT--TC-ATCAGCACAATCACAATGTTTCG---T--------------AA-GCTTG-AGGCT-AGGCCT---A--ATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGC--AACAATGCAA-GGGA-TCTAGGGA-GCCACAAA-TCCACTTTTAAA------AAGT----ACACAATC---TTGG-GCTTGCAAGT--TTAGT------TGAATA-ATT---T------GCGGGAAAATGCAA-CGAGTGCCTT-CTG-TGACG-TTG-TTC-AAT-ATTGGATGACGCT---------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAACTTTT-------TTT-TT---TT--TAAT-TATGG--GAA-ACATAATTTAAAGGGGGAAA-AA---AATT-GT-G-TGA----TAC--GGTATT-ATta
gi|5 : tgatGAGGC-TGGGAAAA-ATAAACCACC--TCGCAAAATGTAGA--TCC-GGCAC----TTGAAAATCGCA-TTTCT--ATTATG------A-GCAAT----A-------CCT------AG--ACAT-GGACGTCAC--------ACTAGATCATCTACACAA-TCACGAATGTTTCGT--AC-A--------------------TG---T--------------AAAGCTTGCAGGCTTAGGCCT---A--ATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGC--AACAATGCAA-GGGA-TCTAGGGAGGCCAC-AAATCCACTTTT
gi|6 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtTCT--ATTAT-------G-G--------AAGATATCCAT------AG--ACAT-G-ACGTCAC--------AC---------------A-TC-------TGTCTT--TC-AGCAA----------------CG---TTTGCAAATTTTGTTAA-ACTTG-AGGCT-AGACCT---A--ATGAT--A--CA-CTG---TATTTTTGGATCG--GAGC--ATCTTTGCAA-GGGA-ACTA
gi|6 : ------GCGGGAAA-TGATC-CAAGCGCTTT-CTG-TGACG-CTG-ATCGGATCAAA---CTA-GTT-CT------TCTCTGTATGTTACGATTTGTA-----TGTGCAGATTT-CCGGGG-----TTTA-----------------TTT-TT---TT--CAAA-CAcaaatcacacgatcttcgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|7 : tctattatggaagatatccatagacatgacgtcacacatctgtctttcagcaacgtttgcaaattttgttaaacttgaggctagacctaatgatacactgtatttttggatcggagcatctttgcaagggaactacaaatcacacgatcttcgccAAA-AA--GATTT-GTG--TGA----TAC--GGTATT-AGTTTTG--TTTTCCACTCT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-TT-GT----A--T-ACG-CGGACT--------------C----------G---T--------CT----C-G--------------A----------CGTCG-TGATAAT-CCAGA-CTA-ACGC---TGA-CTG--------A---TG-TATT--CAG----CCAG-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTCTTGATAAA-G-----GTTGTAG---TTCTGTCACT---T--TTT------C-CCACG-CA--TTA-GT-CATT-AGAG-CTC-GCAG----------------G-------G--CGCGCTGGC-TCGCTGTGCTaccatttt
gi|8 : CA-TCTC-GAGGTTT-GT-GT----A--T-ACG-CCGACT--------------CTCCACAAATTG---TGGCGTATACT----CAA--------------A----------CGTCG-GGATGAT-CCAAA-CTA-AC-T---TGT-C-G-T-ATGATA---TA-TAGT----G----GCAT-TTAGC--GACAACAGACt
gi|9 : T--------------C----------G------------CT----C-G--------------A----------CGTC--TAATGAT-CCAGA-CTA-AAGC---TGA-CTG--------A---TG-TCGT--CAG----TCAT-TT-TT--GACA-GGGA-TTCTGGG-AT-TG-GGATT-TGGTGA-CAACAAA--TTT-TTCTGTTTAAA-G-----GTTGTAG---TTCTGTCACT---TACTTT-T------TCCCG-CA--Tcatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444 2222 11 222 2222 1 222 222222 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 11 11 1 1111 11111 8888888888888888888888888888888888888 3333333333333333333333333 1111111 9999999999999999999999999999999999999999999999 111 22 2 222222 1111 111 22222 111 1 3333333333 111 111 11111111 555555555555555555555 1111 2222222222222 111 111 222 1111 11 11111 7777777777777777777777777777777777777777777777777777777777777777777777777 111 444444444444 1111 1 1 11111 1111 2222222 11 1 5555555555555555
lowQualScore : 5 5 222222222222222 4444 88 1 111 3333 5 000 999999 1 1 1 5 88 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 2 33 33 0 99 6 4444 66666 5 77 3333333333333333333333333333333333333 5 5 7777777777777777777777777 8888888 5 5555555555555555555555555555555555555555555555 5 5 5 5 77 88888 5 888 7 00 99 6 6 8 0 0 333333 7777 11 444 8 55555 777 0 1111111111 222 444 8 6 6 66666666 6 888888888888888888888 2 6 77 0 2222 5 0 22 3333333333333 5 555 999 66 5 99 6 9 6 666 6 000 4444 99 6 11 22222 4 55 1 1 1 1 1 3333 22 1 11 2 2222222222222222222222222222222222222222222222222222222222222222222222222 44 2 6 4 0 888 4 111111111111 5 66 9999 5 5 66 5 6666 5 55 5 0 3 66 1 1 1 5 44444 1111 1 888 1 5 8888888 4 00 5 0 888 4 4 9999 5555555555555555 5
lowQualScore : . . ............... .... .. . ... .... . ... ...... . . . . .. ......................................................................................................... . . .. .. . .. . .... ..... . .. ..................................... . . ......................... ....... . .............................................. . . . . .. ..... . ... . .. .. . . . . . ...... .... .. ... . ..... ... . .......... ... ... . . . ........ . ..................... . . .. . .... . . .. ............. . ... ... .. . .. . . . ... . ... .... .. . .. ..... . .. . . . . . .... .. . .. . ......................................................................... .. . . . . ... . ............ . .. .... . . .. . .... . .. . . . .. . . . . ..... .... . ... . . ....... . .. . . ... . . .... ................ .
lowQualScore : 5 5 555555555555555 5555 55 0 000 5555 0 000 000000 0 0 0 5 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 8 88 88 0 22 7 2222 77777 7 99 4444444444444444444444444444444444444 7 7 4444444444444444444444444 6666666 7 0000000000000000000000000000000000000000000000 7 7 7 7 99 00000 7 333 2 77 22 7 7 0 4 8 000000 0000 88 000 0 00000 555 0 5555555555 666 666 0 7 7 88888888 7 777777777777777777777 5 7 99 7 1111 7 7 11 6666666666666 7 777 666 33 7 22 7 3 7 333 7 000 2222 22 7 00 00000 4 66 8 7 7 7 7 5555 33 7 00 1 0000000000000000000000000000000000000000000000000000000000000000000000000 99 9 2 0 9 333 4 444444444444 0 99 4444 0 0 99 0 4444 0 11 0 2 4 99 4 0 7 7 33333 7777 0 888 4 0 0000000 4 66 0 0 111 4 4 4444 1111111111111111 7
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATCAA-C-NTT-------TTT-TT---TT--CAAA-T-ATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
Reference ( family-6261 ) : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATCAA-C-NTT-------TTT-TT---TT--CAAA-T-ATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-TGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|1 : GACGCCTGAAAAAACAAAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTTT-----TCGCATTTTCT--ATTATCGA----A-G----A--------CCT-AAACTAAG--ACATG-AACGTCACTAACTCGTAC---------------ATT-------TTTTCTTGCTC----------------------CG---T--------------AA-GCTTG-AGGCT-AGGCTAT--CATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAATCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT------GGGGA-AAATGCAA-CGAGTGCGTTGCTGTTGACG-TTTG-T----TTCAATAT---CTGG-ATG-AACCGGCTTTTACGTAAGTCA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATCAA-C-GTTATTGAGGTTTGTT---TTACCAAA-T-ATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTATTT-GTGGCTGATAATTACTAGATATTAATTTTTGTATTTTCTATTAT--GATACTT--GTCTGG--ATCA-CCCG-AACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------GAGCT--------CT-----A-A--------------A----------CGTCGATGGTGAT-CCAGACCTA-CTGC---TGA-CTG---A----C---TG-TAGTTCCAGGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatTCACT---TCCTTTATAAA-CGGCTCG-CA--TTATGTCCATT-AGAGCCTCAGCAGTAAGCCCGAG-C---CA----------GCGCTGGCTTCGCCTCGCgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|10 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaaAGGGACCTCTGGG-AA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTCTTGTAAAA-G-----GTTGGAG---CTCTATCACT---TTCTTT-T--C-C-CCGCA-AA--TTA-GT-C----AGAG-CTC-ACAATG----CGAGAC-AGCGA-----T-TCGCGCTGGC-TTGCTGCGC
gi|11 : A--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATGAAAT-ATT-------TTT-TTC--TT--CAAG-TTATGG--GAA-CCATAATTTGAAGG------------------------------------TATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATTA-TCCC-GACGTTT-TT-G-T----A--T-gt
gi|12 : T-GACG-CT---T----T----TAC---GTAA--TT-AA------CTTACGTAA------A--TGTAACTATTGTG----TTT-CTGGAGTACCTTTTATC-A-T-TTT-------TTT-TTCTCTT--CAAATT-ACGG--GAA-ACATAATTTAAAGGGGAA
gi|13 : tgttcaattggaG-TAGT--CTG----CCAT-TT-TA--GGCAAGGAA---------------A-AT---GGTGA-CA-AAAA--TTT-TACTTCTTAAA-GCTTTAGTTTGAA---TTCTGCCACT---TCCTTT-T--A-C-GCTTG-CA--TTA-GT-CAAA-AGAC-CTA-GCAGCG----C
gi|14 : AAAATGTAGAT--CCG-CCAC----TT-----CCGCATAT-TC--ATTAC-------ATG----ATACCAATACAT-A------G--ACATG-A-CCCCAC--------AC---------------ATC-------TTT-CTT--TCAA--------------------CATTTT--------------AA-ACTTG-AGGCT-AGGCC-TTAAATGAT--G--CA-tc
gi|15 : gGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGACT--CT--------------C----------G---T--------AT-----G-T--------------ATGTACATAATCGTCG-GAATGAT-CCAGA-CTATACATTA-TGA-CTG-T-A----
gi|16 : ACCTCTGGA-AT----G-ATT--GGTGA-CATTA----TTTCTTCTTGT-AAA-A-----GTTGGA-------AGTC--T---ACATTT-T-------CCCG-CAAATTA-GT-CA------A-CTC-ACAATG----CGAGAC-AGCG------TATCGCGCTGGC-TCGtggcggcgtagtaaggccaaatatttgg
gi|17 : TGG--ATCA-TCCC-GACGTTT-TTTG-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CATCA-TGGTGAT-CCAGA-TTA-ACGC---TGA-CTGAT-AT---ACATTG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTtg
gi|18 : CA-TCCC-GACG-TT-GT-G-T----A--T-A--ACGATCT--------------C----------G---T--------ATGTA--T-G--------------ACATAAT----CGTCG-GAATGAT-CCAGA-CTT-ACATTAATGA-CTG-T-A----
gi|19 : AATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--AT-----------------A--------C-------------ACATT-A-CGTCAC--------AC---------------ATC-------TTT-CTTG-TT-T--------------------CA---T--------------AA-GTTTG-AGGCT-AGGCC-tggc
gi|2 : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGTAA--TTAAAAC---TAATGA----CCTTATA-TATTTCA---TGC------TGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT--CCG-CCTC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATC-A-CGTCAC--------AC---------------ATT-------TTT-CTT--TC----------------------CG---T--------------TA-GCTTG-AGGCT-AGGC--T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCTCTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCG------TTC---TGCGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTAA-GTTAAA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATCAA-C-GTT-------TTT-TT---TT---AAA-T-ATGG--GAA-ACATAATTTAAAGGGAAAAA-AA--TATTT-GT-G-TGA----TAC--AGTATT-ATTTTTG--TTTTCCAATAT--G--ACTTC-GTCTGG--ATCA-CTCC-GACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGA-CTA-ACGC---TGA-CTG-TCA----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGA-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TATTTGTTAAA-G-----GCTGGAA---TTTATTTACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----GGAG-C-A------------CGCGCTGGC-TCGCTGCGCTCa
gi|20 : --AATAGT--G--CA-CTG---TATTTTTGGATCG--GAGCAA--CTTTGCA----------AGGGA-GCCAC-ACATTCACGT-----A------AAT----ACACA-------TGT-ACTTGGAC
gi|22 : GTTT-GT-G-T----A--T-ACGCCTA-CT--------------C--------------T--------CCACAAAC-G--------------A----------CGTc
gi|22 : C-GACGTTT-GT-GGC----G--T-ACAT--A-CA--------------C----------A---------------------A--------------A----------CGTCG-GGATGAT-CCAGA-Cttgtggcgtacatacacaaacgtcgggatgatccagac
gi|22 : gtttgtgtatacgcctactctccacaaa-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----ATGT-ACGCC
gi|23 : gtttgtgtatacgcctactctccacaaacgacgtttgtCA-TCCCTGACGTTTTGT-G-T----A--T-ACGCTGA-CC-----------------------------T--------CTGAAA-C-GTGAAGTATACACAAA----------CGTCG-GGATGAT-CCAGA-C
gi|23 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-AC
gi|24 : catccctgacgttttgtgtatacgctgacctctgaaacgtgaaA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CTCTCCACAAATTTGGC----------G---TATA-----CT-----CAA--------------A----------CGTCG-GGATGAT-CCA
gi|24 : TGG--ATCA-TCCC-GACGTTT-GA-G-T----A--T-ACGCCAA-
gi|25 : atctcgaggtttgtgtatacgccgactctccacaaatCA-TTCC-AACGTTT-GT-G-T----A--T-GCGCCGA-CT--------------C----------T---C--------CA-----C-A--------------A----------AGTGG-TG
gi|25 : G--ATCA-TCCC-GCCGTTT-GT-G-T----A--T-ACACC-A-CT--------------tatacacaaacggcgggatgatc
gi|26 : cattccaacgtttgtgtatgcgccgactctccacaa-GTCTCG--ATCA-TCCA-GACGTTT-GT-C-TTATCA--T-A---CGA-AT-------------------------G---A--------GT-----C-G--------------AAG--------CGTTT-TGATGAT-CAAGA-C
gi|27 : CTGGCCATTA-TCCC-GACGTTT-GT---T----A--T-ACAT--A-CA--------------T----------G---TA-------AT-----T-A--------------A----------TATCG-GGATTATCCCAGA-CTA-ta
gi|28 : CTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAATG----CGAGCC-AGCGC-----T-TCTCGCTGGT-TCGCTGCGCTC
gi|29 : -AGAG-CTC-GCAGTG----CGAG-CCAGCGCTTCGCT-TCGCGCTGGC-TCCCTGCGCTCg
gi|3 : AAA------AGT----ACACAAACGTATTGCGACTTGCACGTT-----TAGTTGA---AGATACT---TATTGCGGCGAA-AAATGCAAACGAGTGCGTT-CTGT-GACGCTT-G-T----T-CAATA----------TT-GG------ATGACGCTTTTTA-AA--TGTACCAAGTGTG----TTTTCTGGAGTAC-TTTTATAAA-A-CTT-------TTT-TT---TT--TAAT-T-ATGG--AAACATATAATTTAAAGGG-AAAA-AA--TATTTTGTGG-TGA----TAC--AGT----------------TCCACTATATG--ACTTCCGTCTGG--ATCAACCCC-GACGTTT-TT-G-T----A--TCACGCTTA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGAGCTA-ACACA--TGACCTG-C----------TGATAGT--CAGAGC-CCGTGTT-TT--GACAA-GGACTTCTGGG-AT-TGTG-ATT-TGGTG--CATAAAAACTTT-TACTTGTTAAAGG-----GTTGGAGATTTTTAATCACTTCCTCCTTC-T--ACC-GCTCGACAG-TTA-GTCCATTCAGAG-CT--GCAGTG----CGAG-C-g
gi|30 : TCTGG--ATCA-TCCC-GACGCTT-GT-G-A----A--T-ACGCCca
gi|31 : aaacgtTCTGGG-ACGA-TCCC-GACGTTT-GT-G-T----A--T-ACGGAGA-CT--------------
gi|32 : CTGG--ATCA-CCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------
gi|34 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-
gi|4 : GACGC-TGAAAAAAA-AAA--ACT--TC-CAAAATGT-GAT--CCG-CCAC----TT-----TCGCATTT-CTCTATTATGACGCCAA-T----A--------CATCA------GCTAC-TG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-ATCAGCACAATCACAATGTTTCG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCAC-AAATCCACTTTTAAAA------AGT----ACACAATC---TTGG-GCTTGCAAGTT-----TAGTTGA---ATA-ATT---T------GCGGGAAAATGCAA-CGAGTGCCTT-CTGT-GACG-TT-G-T----T-CAATATTGGATGACGCT---------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATCAA-CTTTT-------TTT-TT---TT--TAAT-T-ATGG--GAA-ACATAATTTAAAGGGGGAAA-AA---AATT-GT-G-TGA----TAC--GGTATT-ATta
gi|5 : tgatGAGGC-TGGGAAAAATAAACCACC--TCGCAAAATGTAGAT--CCG-GCAC----TTGAAAATCGCATTT-CT--ATTATG------A-GCAATA--------CCT-A------G--ACATGGA-CGTCAC--------ACTAGATCATCTACACAATCACGAATGTTT-CGT--AC-A--------------------TG---T--------------AAAGCTTGCAGGCTTAGGCC-T--AATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGCAA--CAATGCAA-GGGATCT-AGGGAGGCCAC-AAATCCACTTTT
gi|6 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtT-CT--ATTAT-------G-G----AAGATATC-CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TGT-CTT--TC-AGCAA----------------CG---TTTGCAAATTTTGTTAA-ACTTG-AGGCT-AGACC-T--AATGAT--A--CA-CTG---TATTTTTGGATCG--GAGCAT--CTTTGCAA-GGGAACT-A
gi|6 : ------GCGGG-AAATGATC-CAAGCGCTTT-CTGT-GACG-CT-GATCGGAT-CAA-AC----T-A-GTT-CT------TCTCTGTATGTTACGATTTGTA-----TGTGCAGATTT-CCGGGG-----TTTA-----------------TTT-TT---TT--CAAA-C-Acaaatcacacgatcttcgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|7 : tctattatggaagatatccatagacatgacgtcacacatctgtctttcagcaacgtttgcaaattttgttaaacttgaggctagacctaatgatacactgtatttttggatcggagcatctttgcaagggaactacaaatcacacgatcttcgccAAA-AA--GATTT-GTG--TGA----TAC--GGTATT-AGTTTTG--TTTTCCACTCT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-TT-G-T----A--T-ACGCGGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-TGATAAT-CCAGA-CTA-ACGC---TGA-CTG--------A---TG-TATT--CAG----CCAG-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTCTTGATAAA-G-----GTTGTAG---TTCTGTCACT---T---TT-T--C-C--CACG-CA--TTA-GT-CATT-AGAG-CTC-GCAGGG----CG--------------------CGCTGGC-TCGCTGTGCTaccatttt
gi|8 : CA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CT--------------CTCCACAAATTG---TGGCGTATACT-----CAA--------------A----------CGTCG-GGATGAT-CCAAA-CTA-AC-T---TGT-C-G-T-ATGATA---TA-TAGT----G----GCAT-TTAGC--GACAACAGACt
gi|9 : T--------------C----------G------------CT-----C-G--------------A----------CGTC--TAATGAT-CCAGA-CTA-AAGC---TGA-CTG--------A---TG-TCGT--CAG----TCAT-TT-TT--GACA-GGGA-TTCTGGG-AT-TG-GGATT-TGGTGA-CAACAAA--TTT-TTCTGTTTAAA-G-----GTTGTAG---TTCTGTCACT---TACTTT-T------TCCCG-CA--Tcatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444 2222 11 222 2222 1 222 222222 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 11 11 1 1111 11111 8888888888888888888888888888888888888 3333333333333333333333333 1111111 9999999999999999999999999999999999999999999999 111 22 2 222222 1111 111 22222 111 1 3333333333 111 111 11111111 555555555555555555555 1111 2222222222222222 111 11 111 222 1111 11 11111 7777777777777777777777777777777777777777777777777777777777777777777777777 111 444444444444 1111 1 1 11111 1111 2222222 11 1 5555555555555555
lowQualScore : 5 5 222222222222222 4444 88 1 111 3333 5 000 999999 1 1 1 5 88 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 33 33 0 99 6 4444 66666 5 77 3333333333333333333333333333333333333 5 5 7777777777777777777777777 8888888 5 5555555555555555555555555555555555555555555555 5 5 5 5 77 88888 5 888 7 00 99 6 6 8 0 0 333333 7777 11 444 8 55555 777 0 1111111111 222 444 8 6 6 66666666 6 888888888888888888888 2 6 77 0 2222 5 0 0000000000000000 5 555 999 22 99 6 9 6 666 6 000 4444 99 6 11 22222 4 55 1 1 1 1 1 3333 22 1 1 2 4444444444444444444444444444444444444444444444444444444444444444444444444 33 2 6 4 0 888 4 111111111111 5 66 9999 5 5 66 5 6666 5 55 5 0 3 66 1 1 1 5 44444 1111 1 888 1 5 8888888 4 00 5 0 888 4 4 9999 5555555555555555 5
lowQualScore : . . ............... .... .. . ... .... . ... ...... . . . . .. ......................................................................................................... . . .. .. . .. . .... ..... . .. ..................................... . . ......................... ....... . .............................................. . . . . .. ..... . ... . .. .. . . . . . ...... .... .. ... . ..... ... . .......... ... ... . . . ........ . ..................... . . .. . .... . . ................ . ... ... .. .. . . . ... . ... .... .. . .. ..... . .. . . . . . .... .. . . . ......................................................................... .. . . . . ... . ............ . .. .... . . .. . .... . .. . . . .. . . . . ..... .... . ... . . ....... . .. . . ... . . .... ................ .
lowQualScore : 5 5 555555555555555 5555 55 0 000 5555 0 000 000000 0 0 0 5 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 8 88 88 0 22 7 2222 77777 7 99 4444444444444444444444444444444444444 7 7 4444444444444444444444444 6666666 7 0000000000000000000000000000000000000000000000 7 7 7 7 99 00000 7 333 2 77 22 7 7 0 4 8 000000 0000 88 000 0 00000 555 0 5555555555 666 666 0 7 7 88888888 7 777777777777777777777 5 7 99 7 1111 7 7 1111111111111111 7 777 666 00 22 7 3 7 333 7 000 2222 22 7 00 00000 4 99 9 8 7 7 7 7777 44 7 5 2 6666666666666666666666666666666666666666666666666666666666666666666666666 99 9 2 0 9 333 4 444444444444 0 99 4444 0 0 99 0 4444 0 11 0 2 4 99 4 0 7 7 33333 7777 0 888 4 0 0000000 4 66 0 0 111 4 4 4444 1111111111111111 7
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
Reference ( family-6261 ) : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|1 : GACGCCTGAAAAAACAAAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTTT-----TCGCATTTTCT--ATTATCGA----A-G----A--------CCT-AAACTAAG--ACATG-AACGTCACTAACTCGTAC---------------ATT-------TTTTCTTGCTC----------------------CG---T--------------AA-GCTTG-AGGCT-AGGCTAT--CATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAATCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT------GGGGA-AAATGCAA-CGAGTGCGTTGCTGTTGACG-TTTG-T----TTCAATAT---CTGG-ATG-AACCGGCTTTTACGTAAGTCA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTTATTGAGGTTTGTT---TTACCAAA-TATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTATTT-GTGGCTGATAATTACTAGATATTAATTTTTGTATTTTCTATTAT--GATACTT--GTCTGG--ATCA-CCCG-AACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------GAGCT--------CT-----A-A--------------A----------CGTCGATGGTGAT-CCAGACCTA-CTGC---TGA-CTG---A----C---TG-TAGTTCCAGGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatTCACT---TCCTTTATAAA-CGGCTCG-CA--TTATGTCCATT-AGAGCCTCAGCAGTAAGCCCGAG-C---CA----------GCGCTGGCTTCGCCTCGCgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|10 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaaAGGGACCTCTGGG-AA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTCTTGTAAAA-G-----GTTGGAG---CTCTATCACT---TTCTTT-T--C-C-CCGCA-AA--TTA-GT-C----AGAG-CTC-ACAATG----CGAGAC-AGCGA-----T-TCGCGCTGGC-TTGCTGCGC
gi|11 : A--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATGAAAT-ATT-------TTT-TTC--TT--CAAGTTATGG--GAA-CCATAATTTGAA------------------------------------GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATTA-TCCC-GACGTTT-TT-G-T----A--T-gt
gi|12 : T-GACG-CT---T----T----TAC---GTAA--TT-AA------CTTACGTAA------A--TGTAACTATTGTG----TTT-CTGGAGTACCTTTTAT-C-AT-TTT-------TTT-TTCTCTT--CAAATTACGG--GAA-ACATAATTTAAAGGGGAA
gi|13 : tgttcaattggaG-TAGT--CTG----CCAT-TT-TA--GGCAAGGAA---------------A-AT---GGTGA-CA-AAAA--TTT-TACTTCTTAAA-GCTTTAGTTTGAA---TTCTGCCACT---TCCTTT-T--A-C-GCTTG-CA--TTA-GT-CAAA-AGAC-CTA-GCAGCG----C
gi|14 : AAAATGTAGAT--CCG-CCAC----TT-----CCGCATAT-TC--ATTAC-------ATG----ATACCAATACAT-A------G--ACATG-A-CCCCAC--------AC---------------ATC-------TTT-CTT--TCAA--------------------CATTTT--------------AA-ACTTG-AGGCT-AGGCC-TTAAATGAT--G--CA-tc
gi|15 : gGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGACT--CT--------------C----------G---T--------AT-----G-T--------------ATGTACATAATCGTCG-GAATGAT-CCAGA-CTATACATTA-TGA-CTG-T-A----
gi|16 : ACCTCTGGA-AT----G-ATT--GGTGA-CATTA----TTTCTTCTTGT-AAA-A-----GTTGGA-------AGTC--T---ACATTT-T-------CCCG-CAAATTA-GT-CA------A-CTC-ACAATG----CGAGAC-AGCG------TATCGCGCTGGC-TCGtggcggcgtagtaaggccaaatatttgg
gi|17 : TGG--ATCA-TCCC-GACGTTT-TTTG-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CATCA-TGGTGAT-CCAGA-TTA-ACGC---TGA-CTGAT-AT---ACATTG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTtg
gi|18 : CA-TCCC-GACG-TT-GT-G-T----A--T-A--ACGATCT--------------C----------G---T--------ATGTA--T-G--------------ACATAAT----CGTCG-GAATGAT-CCAGA-CTT-ACATTAATGA-CTG-T-A----
gi|19 : AATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--AT-----------------A--------C-------------ACATT-A-CGTCAC--------AC---------------ATC-------TTT-CTTG-TT-T--------------------CA---T--------------AA-GTTTG-AGGCT-AGGCC-tggc
gi|2 : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGTAA--TTAAAAC---TAATGA----CCTTATA-TATTTCA---TGC------TGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT--CCG-CCTC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATC-A-CGTCAC--------AC---------------ATT-------TTT-CTT--TC----------------------CG---T--------------TA-GCTTG-AGGCT-AGGC--T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCTCTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCG------TTC---TGCGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTAA-GTTAAA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTT-------TTT-TT---TT---AAA-TATGG--GAA-ACATAATTTAAAGGGAAAAA-AA--TATTT-GT-G-TGA----TAC--AGTATT-ATTTTTG--TTTTCCAATAT--G--ACTTC-GTCTGG--ATCA-CTCC-GACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGA-CTA-ACGC---TGA-CTG-TCA----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGA-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TATTTGTTAAA-G-----GCTGGAA---TTTATTTACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----GGAG-C-A------------CGCGCTGGC-TCGCTGCGCTCa
gi|20 : --AATAGT--G--CA-CTG---TATTTTTGGATCG--GAGCAA--CTTTGCA----------AGGGA-GCCAC-ACATTCACGT-----A------AAT----ACACA-------TGT-ACTTGGAC
gi|22 : GTTT-GT-G-T----A--T-ACGCCTA-CT--------------C--------------T--------CCACAAAC-G--------------A----------CGTc
gi|22 : C-GACGTTT-GT-GGC----G--T-ACAT--A-CA--------------C----------A---------------------A--------------A----------CGTCG-GGATGAT-CCAGA-Cttgtggcgtacatacacaaacgtcgggatgatccagac
gi|22 : gtttgtgtatacgcctactctccacaaa-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----ATGT-ACGCC
gi|23 : gtttgtgtatacgcctactctccacaaacgacgtttgtCA-TCCCTGACGTTTTGT-G-T----A--T-ACGCTGA-CC-----------------------------T--------CTGAAA-C-GTGAAGTATACACAAA----------CGTCG-GGATGAT-CCAGA-C
gi|23 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-AC
gi|24 : catccctgacgttttgtgtatacgctgacctctgaaacgtgaaA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CTCTCCACAAATTTGGC----------G---TATA-----CT-----CAA--------------A----------CGTCG-GGATGAT-CCA
gi|25 : CA-TTCC-AACGTTT-GT-G-T----A--T-GCGCCGA-CT--------------C----------
gi|25 : G--ATCA-TCCC-GCCGTTT-GT-G-T----A--T-ACACC-A-CT--------------tccacaaagtggtgtatacacaaacggcgggatgatc
gi|26 : cattccaacgtttgtgtatgcgccgactctccacaa-GTCTCG--ATCA-TCCA-GACGTTT-GT-C-TTATCA--T-A---CGA-AT-------------------------G---A--------GT-----C-G--------------AAG--------CGTTT-TGATGAT-CAAGA-C
gi|27 : CTGGCCATTA-TCCC-GACGTTT-GT---T----A--T-ACAT--A-CA--------------T----------G---TA-------AT-----T-A--------------A----------TATCG-GGATTATCCCAGA-CTA-ta
gi|28 : CTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAATG----CGAGCC-AGCGC-----T-TCTCGCTGGT-TCGCTGCGCTC
gi|29 : -AGAG-CTC-GCAGTG----CGAG-CCAGCGCTTCGCT-TCGCGCTGGC-TCCCTGCGCTCg
gi|3 : AAA------AGT----ACACAAACGTATTGCGACTTGCACGTT-----TAGTTGA---AGATACT---TATTGCGGCGAA-AAATGCAAACGAGTGCGTT-CTGT-GACGCTT-G-T----T-CAATA----------TT-GG------ATGACGCTTTTTA-AA--TGTACCAAGTGTG----TTTTCTGGAGTAC-TTTTAT-AAAA-CTT-------TTT-TT---TT--TAAT-TATGG--AAACATATAATTTAAAGGG-AAAA-AA--TATTTTGTGG-TGA----TAC--AGT----------------TCCACTATATG--ACTTCCGTCTGG--ATCAACCCC-GACGTTT-TT-G-T----A--TCACGCTTA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGAGCTA-ACACA--TGACCTG-C----------TGATAGT--CAGAGC-CCGTGTT-TT--GACAA-GGACTTCTGGG-AT-TGTG-ATT-TGGTG--CATAAAAACTTT-TACTTGTTAAAGG-----GTTGGAGATTTTTAATCACTTCCTCCTTC-T--ACC-GCTCGACAG-TTA-GTCCATTCAGAG-CT--GCAGTG----CGAG-C-g
gi|30 : TCTGG--ATCA-TCCC-GACGCTT-GT-G-A----A--T-ACGCCca
gi|31 : aaacgtTCTGGG-ACGA-TCCC-GACGTTT-GT-G-T----A--T-ACGGAGA-CT--------------
gi|32 : CTGG--ATCA-CCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------
gi|34 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-
gi|4 : GACGC-TGAAAAAAA-AAA--ACT--TC-CAAAATGT-GAT--CCG-CCAC----TT-----TCGCATTT-CTCTATTATGACGCCAA-T----A--------CATCA------GCTAC-TG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-ATCAGCACAATCACAATGTTTCG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCAC-AAATCCACTTTTAAAA------AGT----ACACAATC---TTGG-GCTTGCAAGTT-----TAGTTGA---ATA-ATT---T------GCGGGAAAATGCAA-CGAGTGCCTT-CTGT-GACG-TT-G-T----T-CAATATTGGATGACGCT---------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAACTTTT-------TTT-TT---TT--TAAT-TATGG--GAA-ACATAATTTAAAGGGGGAAA-AA---AATT-GT-G-TGA----TAC--GGTATT-ATta
gi|5 : tgatGAGGC-TGGGAAAAATAAACCACC--TCGCAAAATGTAGAT--CCG-GCAC----TTGAAAATCGCATTT-CT--ATTATG------A-GCAATA--------CCT-A------G--ACATGGA-CGTCAC--------ACTAGATCATCTACACAATCACGAATGTTT-CGT--AC-A--------------------TG---T--------------AAAGCTTGCAGGCTTAGGCC-T--AATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGCAA--CAATGCAA-GGGATCT-AGGGAGGCCAC-AAATCCACTTTT
gi|6 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtT-CT--ATTAT-------G-G----AAGATATC-CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TGT-CTT--TC-AGCAA----------------CG---TTTGCAAATTTTGTTAA-ACTTG-AGGCT-AGACC-T--AATGAT--A--CA-CTG---TATTTTTGGATCG--GAGCAT--CTTTGCAA-GGGAACT-A
gi|6 : ------GCGGG-AAATGATC-CAAGCGCTTT-CTGT-GACG-CT-GATCGGAT-CAA-AC----T-A-GTT-CT------TCTCTGTATGTTACGATTTGTA-----TGTGCAGATTT-CCGGGG-----TTTA-----------------TTT-TT---TT--CAAA-CAcaaatcacacgatcttcgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|7 : tctattatggaagatatccatagacatgacgtcacacatctgtctttcagcaacgtttgcaaattttgttaaacttgaggctagacctaatgatacactgtatttttggatcggagcatctttgcaagggaactacaaatcacacgatcttcgccAAA-AA--GATTT-GTG--TGA----TAC--GGTATT-AGTTTTG--TTTTCCACTCT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-TT-G-T----A--T-ACGCGGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-TGATAAT-CCAGA-CTA-ACGC---TGA-CTG--------A---TG-TATT--CAG----CCAG-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTCTTGATAAA-G-----GTTGTAG---TTCTGTCACT---T---TT-T--C-C--CACG-CA--TTA-GT-CATT-AGAG-CTC-GCAGGG----CG--------------------CGCTGGC-TCGCTGTGCTaccatttt
gi|8 : CA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CT--------------CTCCACAAATTG---TGGCGTATACT-----CAA--------------A----------CGTCG-GGATGAT-CCAAA-CTA-AC-T---TGT-C-G-T-ATGATA---TA-TAGT----G----GCAT-TTAGC--GACAACAGACt
gi|9 : T--------------C----------G------------CT-----C-G--------------A----------CGTC--TAATGAT-CCAGA-CTA-AAGC---TGA-CTG--------A---TG-TCGT--CAG----TCAT-TT-TT--GACA-GGGA-TTCTGGG-AT-TG-GGATT-TGGTGA-CAACAAA--TTT-TTCTGTTTAAA-G-----GTTGTAG---TTCTGTCACT---TACTTT-T------TCCCG-CA--Tcatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444 2222 11 222 2222 1 222 222222 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 11 11 1 1111 11111 8888888888888888888888888888888888888 3333333333333333333333333 1111111 9999999999999999999999999999999999999999999999 111 22 2 222222 1111 111 22222 111 1 3333333333 111 111 11111111 555555555555555555555 1111 2222222222222222 111 11 111 222 1111 11 11111 7777777777777777777777777777777777777777777777777777777777777777777777777 111 444444444444 1111 1 1 11111 1111 2222222 11 1 5555555555555555
lowQualScore : 5 5 222222222222222 4444 88 1 111 3333 5 000 999999 1 1 1 5 88 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 33 33 0 99 6 4444 66666 5 77 3333333333333333333333333333333333333 5 5 7777777777777777777777777 8888888 5 5555555555555555555555555555555555555555555555 5 5 5 5 77 88888 5 888 7 00 99 6 6 8 0 0 333333 7777 11 444 8 55555 777 0 1111111111 222 444 8 6 6 66666666 6 888888888888888888888 2 6 77 0 2222 5 0 0000000000000000 5 555 999 22 99 6 9 6 666 6 000 4444 99 6 11 22222 4 55 1 1 1 1 1 3333 22 1 1 2 4444444444444444444444444444444444444444444444444444444444444444444444444 33 2 6 4 0 888 4 111111111111 5 66 9999 5 5 66 5 6666 5 55 5 0 3 66 1 1 1 5 44444 1111 1 888 1 5 8888888 4 00 5 0 888 4 4 9999 5555555555555555 5
lowQualScore : . . ............... .... .. . ... .... . ... ...... . . . . .. ......................................................................................................... . . .. .. . .. . .... ..... . .. ..................................... . . ......................... ....... . .............................................. . . . . .. ..... . ... . .. .. . . . . . ...... .... .. ... . ..... ... . .......... ... ... . . . ........ . ..................... . . .. . .... . . ................ . ... ... .. .. . . . ... . ... .... .. . .. ..... . .. . . . . . .... .. . . . ......................................................................... .. . . . . ... . ............ . .. .... . . .. . .... . .. . . . .. . . . . ..... .... . ... . . ....... . .. . . ... . . .... ................ .
lowQualScore : 5 5 555555555555555 5555 55 0 000 5555 0 000 000000 0 0 0 5 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 8 88 88 0 22 7 2222 77777 7 99 4444444444444444444444444444444444444 7 7 4444444444444444444444444 6666666 7 0000000000000000000000000000000000000000000000 7 7 7 7 99 00000 7 333 2 77 22 7 7 0 4 8 000000 0000 88 000 0 00000 555 0 5555555555 666 666 0 7 7 88888888 7 777777777777777777777 5 7 99 7 1111 7 7 1111111111111111 7 777 666 00 22 7 3 7 333 7 000 2222 22 7 00 00000 4 99 9 8 7 7 7 7777 44 7 5 2 6666666666666666666666666666666666666666666666666666666666666666666666666 99 9 2 0 9 333 4 444444444444 0 99 4444 0 0 99 0 4444 0 11 0 2 4 99 4 0 7 7 33333 7777 0 888 4 0 0000000 4 66 0 0 111 4 4 4444 1111111111111111 7
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
Reference ( family-6261 ) : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|1 : GACGCCTGAAAAAACAAAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTTT-----TCGCATTTTCT--ATTATCGA----A-G----A--------CCT-AAACTAAG--ACATG-AACGTCACTAACTCGTAC---------------ATT-------TTTTCTTGCTC----------------------CG---T--------------AA-GCTTG-AGGCT-AGGCTAT--CATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAATCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT------GGGGA-AAATGCAA-CGAGTGCGTTGCTGTTGACG-TTTG-T----TTCAATAT---CTGG-ATG-AACCGGCTTTTACGTAAGTCA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTTATTGAGGTTTGTT---TTACCAAA-TATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTATTT-GTGGCTGATAATTACTAGATATTAATTTTTGTATTTTCTATTAT--GATACTT--GTCTGG--ATCA-CCCG-AACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------GAGCT--------CT-----A-A--------------A----------CGTCGATGGTGAT-CCAGACCTA-CTGC---TGA-CTG---A----C---TG-TAGTTCCAGGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatTCACT---TCCTTTATAAA-CGGCTCG-CA--TTATGTCCATT-AGAGCCTCAGCAGTAAGCCCGAG-C---CA----------GCGCTGGCTTCGCCTCGCgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|10 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaaAGGGACCTCTGGG-AA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTCTTGTAAAA-G-----GTTGGAG---CTCTATCACT---TTCTTT-T--C-C-CCGCA-AA--TTA-GT-C----AGAG-CTC-ACAATG----CGAGAC-AGCGA-----T-TCGCGCTGGC-TTGCTGCGC
gi|11 : A--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATGAAAT-ATT-------TTT-TTC--TT--CAAGTTATGG--GAA-CCATAATTTGAA------------------------------------GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATTA-TCCC-GACGTTT-TT-G-T----A--T-gt
gi|12 : T-GACG-CT---T----T----TAC---GTAA--TT-AA------CTTACGTAA------A--TGTAACTATTGTG----TTT-CTGGAGTACCTTTTAT-C-AT-TTT-------TTT-TTCTCTT--CAAATTACGG--GAA-ACATAATTTAAAGGGGAA
gi|13 : tgttcaattggaG-TAGT--CTG----CCAT-TT-TA--GGCAAGGAA---------------A-AT---GGTGA-CA-AAAA--TTT-TACTTCTTAAA-GCTTTAGTTTGAA---TTCTGCCACT---TCCTTT-T--A-C-GCTTG-CA--TTA-GT-CAAA-AGAC-CTA-GCAGCG----C
gi|14 : AAAATGTAGAT--CCG-CCAC----TT-----CCGCATAT-TC--ATTAC-------ATG----ATACCAATACAT-A------G--ACATG-A-CCCCAC--------AC---------------ATC-------TTT-CTT--TCAA--------------------CATTTT--------------AA-ACTTG-AGGCT-AGGCC-TTAAATGAT--G--CA-tc
gi|15 : gGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGACT--CT--------------C----------G---T--------AT-----G-T--------------ATGTACATAATCGTCG-GAATGAT-CCAGA-CTATACATTA-TGA-CTG-T-A----
gi|16 : ACCTCTGGA-AT----G-ATT--GGTGA-CATTA----TTTCTTCTTGT-AAA-A-----GTTGGA-------AGTC--T---ACATTT-T-------CCCG-CAAATTA-GT-CA------A-CTC-ACAATG----CGAGAC-AGCG------TATCGCGCTGGC-TCGtggcggcgtagtaaggccaaatatttgg
gi|17 : TGG--ATCA-TCCC-GACGTTT-TTTG-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CATCA-TGGTGAT-CCAGA-TTA-ACGC---TGA-CTGAT-AT---ACATTG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTtg
gi|18 : CA-TCCC-GACG-TT-GT-G-T----A--T-A--ACGATCT--------------C----------G---T--------ATGTA--T-G--------------ACATAAT----CGTCG-GAATGAT-CCAGA-CTT-ACATTAATGA-CTG-T-A----
gi|19 : AATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--AT-----------------A--------C-------------ACATT-A-CGTCAC--------AC---------------ATC-------TTT-CTTG-TT-T--------------------CA---T--------------AA-GTTTG-AGGCT-AGGCC-tggc
gi|2 : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGTAA--TTAAAAC---TAATGA----CCTTATA-TATTTCA---TGC------TGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT--CCG-CCTC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATC-A-CGTCAC--------AC---------------ATT-------TTT-CTT--TC----------------------CG---T--------------TA-GCTTG-AGGCT-AGGC--T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCTCTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCG------TTC---TGCGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTAA-GTTAAA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-GTT-------TTT-TT---TT---AAA-TATGG--GAA-ACATAATTTAAAGGGAAAAA-AA--TATTT-GT-G-TGA----TAC--AGTATT-ATTTTTG--TTTTCCAATAT--G--ACTTC-GTCTGG--ATCA-CTCC-GACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGA-CTA-ACGC---TGA-CTG-TCA----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGA-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TATTTGTTAAA-G-----GCTGGAA---TTTATTTACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----GGAG-C-A------------CGCGCTGGC-TCGCTGCGCTCa
gi|20 : --AATAGT--G--CA-CTG---TATTTTTGGATCG--GAGCAA--CTTTGCA----------AGGGA-GCCAC-ACATTCACGT-----A------AAT----ACACA-------TGT-ACTTGGAC
gi|22 : GTTT-GT-G-T----A--T-ACGCCTA-CT--------------C--------------T--------CCACAAAC-G--------------A----------CGTc
gi|22 : C-GACGTTT-GT-GGC----G--T-ACAT--A-CA--------------C----------A---------------------A--------------A----------CGTCG-GGATGAT-CCAGA-Cttgtggcgtacatacacaaacgtcgggatgatccagac
gi|22 : gtttgtgtatacgcctactctccacaaa-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----ATGT-ACGCC
gi|23 : gtttgtgtatacgcctactctccacaaacgacgtttgtCA-TCCCTGACGTTTTGT-G-T----A--T-ACGCTGA-CC-----------------------------T--------CTGAAA-C-GTGAAGTATACACAAA----------CGTCG-GGATGAT-CCAGA-C
gi|23 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-AC
gi|24 : catccctgacgttttgtgtatacgctgacctctgaaacgtgaaA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CTCTCCACAAATTTGGC----------G---TATA-----CT-----CAA--------------A----------CGTCG-GGATGAT-CCA
gi|25 : CA-TTCC-AACGTTT-GT-G-T----A--T-GCGCCGA-CT--------------C----------
gi|25 : G--ATCA-TCCC-GCCGTTT-GT-G-T----A--T-ACACC-A-CT--------------tccacaaagtggtgtatacacaaacggcgggatgatc
gi|26 : cattccaacgtttgtgtatgcgccgactctccacaa-GTCTCG--ATCA-TCCA-GACGTTT-GT-C-TTATCA--T-A---CGA-AT-------------------------G---A--------GT-----C-G--------------AAG--------CGTTT-TGATGAT-CAAGA-C
gi|27 : CTGGCCATTA-TCCC-GACGTTT-GT---T----A--T-ACAT--A-CA--------------T----------G---TA-------AT-----T-A--------------A----------TATCG-GGATTATCCCAGA-CTA-ta
gi|28 : CTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAATG----CGAGCC-AGCGC-----T-TCTCGCTGGT-TCGCTGCGCTC
gi|29 : -AGAG-CTC-GCAGTG----CGAG-CCAGCGCTTCGCT-TCGCGCTGGC-TCCCTGCGCTCg
gi|3 : AAA------AGT----ACACAAACGTATTGCGACTTGCACGTT-----TAGTTGA---AGATACT---TATTGCGGCGAA-AAATGCAAACGAGTGCGTT-CTGT-GACGCTT-G-T----T-CAATA----------TT-GG------ATGACGCTTTTTA-AA--TGTACCAAGTGTG----TTTTCTGGAGTAC-TTTTAT-AAAA-CTT-------TTT-TT---TT--TAAT-TATGG--AAACATATAATTTAAAGGG-AAAA-AA--TATTTTGTGG-TGA----TAC--AGT----------------TCCACTATATG--ACTTCCGTCTGG--ATCAACCCC-GACGTTT-TT-G-T----A--TCACGCTTA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCA-TGGTGAT-CCAGAGCTA-ACACA--TGACCTG-C----------TGATAGT--CAGAGC-CCGTGTT-TT--GACAA-GGACTTCTGGG-AT-TGTG-ATT-TGGTG--CATAAAAACTTT-TACTTGTTAAAGG-----GTTGGAGATTTTTAATCACTTCCTCCTTC-T--ACC-GCTCGACAG-TTA-GTCCATTCAGAG-CT--GCAGTG----CGAG-C-g
gi|30 : TCTGG--ATCA-TCCC-GACGCTT-GT-G-A----A--T-ACGCCca
gi|31 : aaacgtTCTGGG-ACGA-TCCC-GACGTTT-GT-G-T----A--T-ACGGAGA-CT--------------
gi|32 : CTGG--ATCA-CCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------
gi|34 : -GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-
gi|4 : GACGC-TGAAAAAAA-AAA--ACT--TC-CAAAATGT-GAT--CCG-CCAC----TT-----TCGCATTT-CTCTATTATGACGCCAA-T----A--------CATCA------GCTAC-TG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-ATCAGCACAATCACAATGTTTCG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCAC-AAATCCACTTTTAAAA------AGT----ACACAATC---TTGG-GCTTGCAAGTT-----TAGTTGA---ATA-ATT---T------GCGGGAAAATGCAA-CGAGTGCCTT-CTGT-GACG-TT-G-T----T-CAATATTGGATGACGCT---------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAACTTTT-------TTT-TT---TT--TAAT-TATGG--GAA-ACATAATTTAAAGGGGGAAA-AA---AATT-GT-G-TGA----TAC--GGTATT-ATta
gi|5 : tgatGAGGC-TGGGAAAAATAAACCACC--TCGCAAAATGTAGAT--CCG-GCAC----TTGAAAATCGCATTT-CT--ATTATG------A-GCAATA--------CCT-A------G--ACATGGA-CGTCAC--------ACTAGATCATCTACACAATCACGAATGTTT-CGT--AC-A--------------------TG---T--------------AAAGCTTGCAGGCTTAGGCC-T--AATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGCAA--CAATGCAA-GGGATCT-AGGGAGGCCAC-AAATCCACTTTT
gi|6 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtT-CT--ATTAT-------G-G----AAGATATC-CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TGT-CTT--TC-AGCAA----------------CG---TTTGCAAATTTTGTTAA-ACTTG-AGGCT-AGACC-T--AATGAT--A--CA-CTG---TATTTTTGGATCG--GAGCAT--CTTTGCAA-GGGAACT-A
gi|6 : ------GCGGG-AAATGATC-CAAGCGCTTT-CTGT-GACG-CT-GATCGGAT-CAA-AC----T-A-GTT-CT------TCTCTGTATGTTACGATTTGTA-----TGTGCAGATTT-CCGGGG-----TTTA-----------------TTT-TT---TT--CAAA-CAcaaatcacacgatcttcgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|7 : tctattatggaagatatccatagacatgacgtcacacatctgtctttcagcaacgtttgcaaattttgttaaacttgaggctagacctaatgatacactgtatttttggatcggagcatctttgcaagggaactacaaatcacacgatcttcgccAAA-AA--GATTT-GTG--TGA----TAC--GGTATT-AGTTTTG--TTTTCCACTCT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-TT-G-T----A--T-ACGCGGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-TGATAAT-CCAGA-CTA-ACGC---TGA-CTG--------A---TG-TATT--CAG----CCAG-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTCTTGATAAA-G-----GTTGTAG---TTCTGTCACT---T---TT-T--C-C--CACG-CA--TTA-GT-CATT-AGAG-CTC-GCAGGG----CG--------------------CGCTGGC-TCGCTGTGCTaccatttt
gi|8 : CA-TCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CT--------------CTCCACAAATTG---TGGCGTATACT-----CAA--------------A----------CGTCG-GGATGAT-CCAAA-CTA-AC-T---TGT-C-G-T-ATGATA---TA-TAGT----G----GCAT-TTAGC--GACAACAGACt
gi|9 : T--------------C----------G------------CT-----C-G--------------A----------CGTC--TAATGAT-CCAGA-CTA-AAGC---TGA-CTG--------A---TG-TCGT--CAG----TCAT-TT-TT--GACA-GGGA-TTCTGGG-AT-TG-GGATT-TGGTGA-CAACAAA--TTT-TTCTGTTTAAA-G-----GTTGTAG---TTCTGTCACT---TACTTT-T------TCCCG-CA--Tcatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
blockSeqs : . . CT A . A . . . . . G A A . . . C CC . G . . . GAAAA . CT GACGCCAATACATCAGCT G . ACTAGATCATCTACACA ACGAATG . TCATCAGCACAATCACAATGTTTCGT A C T . TA GAT . G T AA . . . G A . . AA GTA G . . T TATTGCG GGA AAA . . C GATCGGA . TTGGATGACGCT G C TT CAGA T GAAATATT . CTC C GT . C G . T T GG . . . . ATG C CC A T T T G TATC TG C C T CTCCACAAATTGTGGCGTATACTCAAA G C G T TAA C ATATACAT A . AGC G A . . TGT G T . T T AC C A T G CTTTA GATT T TCC T . ACCG A AA . C TTC . . . CCAGCGCTTCGCTT .
blockSeqs : . T . . . . . . . . . ATGATACCAATACATAG . . AC . . TCAGCAACGTTTGCAAATTTTGTT . . . . . G . . G A . . . . . . . AA . . . . . T AA AA . . . GT . CGTAAGTTAAA T . . . . CAACTTTT . C C AT . . A . T . G . . . . G . G . . . . . . . . T . CTCCACAAATTTGGCGTATACTCAAA T . . . TA . TATGATA . . . . . . . TG . T . T A . . T T . . A A . C . CCC . G . . AA . . . ACAGCGATT .
blockSeqs : . . . . . . . . . . . GGAAGATATCCATAG . . AC . . TCAACATTTT . . . . . G . . T A . . . . . . . AT . . . . . T GG TC . . . GT . CGTAATTAA G . . . . CAACGTT . . T A . . G . G . G . . . . G . . . . . . . . . . C . TCTGAAACGTGAAGTATACACAAA G . . . A . TCAA . . . . . . . TG . T . T A . . A T . . A A . C . ACG . . . . TT . . . ACAGCGTAT .
blockSeqs : . . . . . . GAGCAATACCTAG . . AC . . GTTTCAT . . . . . G . . T . . . . . . . . . . . . . . . . GT . CTAGTTCT G . . . . AAAACTT . . T T . . . . . . G . . . . G . . . . . . . . . . T . CGTATGTATGTACATAAT T . . . . . C . . . . . . . TG . T . C A . . A T . . G A . C . ACG . . . . TT . . . CCAGCGCTT .
blockSeqs : . . . . . . AGACATAG . . AC . . ACATGT . . . . . G . . G . . . . . . T . TTGG . . . . . CATTTT . . C T . . . . . . . . . . . . . . . . . . . . C . CGTATGTATGACATAAT G . . . . . A . . . . . . . TG . T . A A . . T T . . G T . C . CC . . . . TT . . . CA .
blockSeqs : . . AC . . AC . . TCCGT . . . . . A . . . . . . . . A . . . . . . . . . . C . CTCCACAAACGA G . . . . . A . . . . . . . . . . . . A . . T . . . . T . A . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . GAGTCGAAG G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . TGTAATTAA T . . . . . . . . . .
blockSeqs : . . . . . . . . . C . CGTCTCGA G . . .
blockSeqs : . . . . . . . . . C . CGTCTCGA T . .
blockSeqs : . . . . . . . . . C . CGTCTCGA T . .
blockSeqs : . . . . . . . . . T . CGTCTCGA G . .
blockSeqs : . . . . . . . . . C . CGCTCGA T .
blockSeqs : . . . . . . . . . A . CAAA
blockSeqs : . . . . . . . . . C .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . C .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ** **** AC*********************** TCAACGAGTTTCT********************************* G**** *** A* ** ****** **** GT****** CTAGTTGA************* NAAATTTT******** C** ** T** G** **** ** ** G**** G* TA********** ** **** ** TG** T* CN***** **** NCAGCGTT********
originalCons : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---------------ATC-------TTT-CTT--TC-A--------------------CG---T--------------AA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATAC---GTGA-GTT-AA------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTAT-CAAC-NTT-------TTT-TT---TT--CAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TATTT-GTGG-TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTAT--G--ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCG-NGATGAT-CCAGA-CTA-ACGC---TGA-CTG-T-A----A---TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-T--A-C-GCTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAG-C-AGCG------T-TCGCGCTGGC-TCGCTGCGCTC
finalCons : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCACAC-----------------------ATC-------TTT-CTTTCAACGAGTTTCT---------------------------------AA-GCTTG-AGGCT-AGGCC-T--AATGATG----CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGG-AAATGCAA-CGAGTGCGTT-CTGT-GACG-TTGT------T-CAATACTAGTTGA-------------TTTACGTAAGTTA-AA--TGTACCAAGTGTG----TTT-CTGGAGTACCTTTTATNAAATTTT--------TTT-TT---TTC--AAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AAT--ATTT-GTG--TGA----TAC--GGTATT-ATTTTTG--TTTTCCACTATG----ACTTC-GTCTGG--ATCA-TCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT-----C-G--------------A----------CGTCGG-GATGAT-CCAGA-CTA-ACGC---TGA-CTGTA----------TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-ATTG--G-ATTT-GGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACT---TCCTTT-TCN-----CTCG-CA--TTA-GT-CATT-AGAG-CTC-GCAGTG----CGAGNCAGCGTT--------CGCGCTGGC-TCGCTGCGCTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444 2222 11 222 2222 1 222 222222 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 11 11 1 1111 11111 8888888888888888888888888888888888888 22222222 111 222222222222222222222222222222222222222222222 111 22 1 222222 1111 111 22222 111 1 3333333333 111 1111 111 6666666 22222222 1111 222222222222222 111 11 11111 1111 1111 11 11 11 666666666666666666666666666666666666666666666666666666666666666666666666 111 3333333333 1111 1 1 11111 1111 2222222222222 11111 33333333
lowQualScore : 5 5 222222222222222 4444 88 1 111 3333 5 000 999999 1 1 1 5 88 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 33 33 0 99 6 4444 66666 5 77 3333333333333333333333333333333333333 5 5 00000000 000 333333333333333333333333333333333333333333333 5 5 5 5 77 88888 5 888 7 00 99 6 6 8 0 6 0 333333 7777 11 444 8 55555 777 0 1111111111 44 8 444 8 8 8 6 6 4444 6 222 77 8 6 1111111 3 44444444 6 77 0 7777 0 888888888888888 000 888 22 99 6 6 1 6 88888 0000 4444 99 6 11 11 11 8 55 1 1 1 1 1 3333 22 1 11 2 555555555555555555555555555555555555555555555555555555555555555555555555 33 2 6 4 66 888 4 1111111111 4 66 9999 5 5 66 5 6666 5 55 5 0 3 66 1 1 1 5 44444 1111 1 0 8888888888888 3 4 66 4 5 5 00000 4 4 9999 7 0 33333333
lowQualScore : . . ............... .... .. . ... .... . ... ...... . . . . .. ......................................................................................................... . . .. .. . .. . .... ..... . .. ..................................... . . ........ ... ............................................. . . . . .. ..... . ... . .. .. . . . . . . ...... .... .. ... . ..... ... . .......... .. . ... . . . . . .... . ... .. . . ....... . ........ . .. . .... . ............... ... ... .. .. . . . . ..... .... .... .. . .. .. .. . .. . . . . . .... .. . .. . ........................................................................ .. . . . .. ... . .......... . .. .... . . .. . .... . .. . . . .. . . . . ..... .... . . ............. . . .. . . . ..... . . .... . . ........
lowQualScore : 5 5 555555555555555 5555 55 0 000 5555 0 000 000000 0 0 0 5 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 8 88 88 0 22 7 2222 77777 7 99 4444444444444444444444444444444444444 7 7 77777777 000 999999999999999999999999999999999999999999999 7 7 7 7 99 00000 7 333 2 77 22 7 7 0 6 0 8 000000 0000 88 000 0 00000 555 0 5555555555 66 0 666 0 0 0 7 7 2222 7 888 77 3 7 7777777 2 22222222 7 99 7 9999 7 000000000000000 000 999 00 22 7 7 0 7 00000 0000 2222 22 7 00 00 00 0 99 9 8 7 7 7 7777 44 7 00 1 777777777777777777777777777777777777777777777777777777777777777777777777 11 9 2 0 11 333 4 7777777777 0 99 4444 0 0 99 0 4444 0 11 0 2 4 99 4 0 7 7 33333 7777 0 4 2222222222222 7 4 11 4 0 0 22222 4 4 4444 6 7 66666666
consensus : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---ATCTTTCTTTCA-----------A---CGA--GTTT----------CG------TAA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGGAAA-TGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATA-C-T-GGAT-GACGC----TTTACGTAAGT--------TA-AA--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATCAA----AT-T----TTTTTTT---T-TCAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TA-TTTGT-G--TGA----TAC--GGTATT-ATTTTTG--TTTTCCAC--TATG--ACTT-CGTCTGG--ATC-ATCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT----C-G--------------A----------CGTCGG-GATGAT-CCAGA-CTA-AC--GC---TGA-CTG-T--A-----TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACTTCCTTT-----T-----CNCTCG-C--A-TTA-GT-C-ATT-AGAG-CTC-GCAGTG----CGAGCCAGCG------T-TCGCGCTGGCTCGCTGCGCTC
Reference ( family-6261 ) : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAANACATCTAATGAATCCCCTTATAGTATTTCAGCGTGCACGTTCTNATNTANTAGGTAAGTCCCAGCCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAANAAA--ACC--TC-CAAAATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATG-A-CGTCAC--------AC---ATCTTTCTTTCA-----------A---CGA--GTTT----------C-------TAA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCACTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCGGGAAA-TGCAA-CGAGTGCGTT-CTGT-GACG-TT-G-T----T-CAATA-C-T-AGTT-GA-------TTTACGTAAGT--------TA-AA--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATNAA----AT-T----TTTTTTT---T-TCAAA-TATGG--GAA-ACATAATTTAAAGGGGAAAA-AA--TA-TTTGT-G--TGA----TAC--GGTATT-ATTTTTG--TTTTCCAC--TATG--ACTT-CGTCTGG--ATC-ATCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------G---T--------CT----C-G--------------A----------CGTCGG-GATGAT-CCAGA-CTA-AC--GC---TGA-CTG-T--A-----TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TNCTTGTTAAA-G-----GTTGGAG---TTCNGTCACTTCCTTT-----T-----CNCTCG-C--A-TTA-GT-C-ATT-AGAG-CTC-GCAGTG----CGAGNCAGCG------T-TCGCGCTGGCTCGCTGCGCTC
gi|1 : AACCGGATCTAACTAATGTTGACGGCAATTCTTTCAATTATAGTTTAATTTAGTAAAATTAACACATCTAATGAATCCTCTTATAGTATTTCAGCGTGCACGTTCTTATCTATTAGGTAAGTCCCAGCCCCCCC
gi|1 : GACGCCTGAAAAAACAAAA--ACCGCTC-CAAAATGTAGATTTCCGGCCACCTCTTT-----TCGCATTTTCT--ATTATCGA----A-G----A--------CCT-AAACTAAG--ACATG-AACGTCACTAACTCGTAC---ATTTTTTCTT----------------------GCTC----------CG------TAA-GCTTG-AGGCT-AGGCTAT--CATGATCCG--CAGCTGAGTTATTTTT-GATCGACGAGCAAAACAATGCAATGGGATTTTAGGAA-GCCACAAATCCTACTTTTAAAAGTCAGAAATTTCAACAAAAAT---TCAT-A--TATACGTTGTCAGTGGTTGATGAAGA-ATTATAT------GGGGAAAA-TGCAA-CGAGTGCGTTGCTGTTGACG-TTTG-T----TTCAATATC-T-GGAT-GAACCGGCTTTTACGTAAGT--------CA-AA--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATCAACGTTAT-TGAGGTTTGTTT---TACCAAA-TATGGGAGAA-ACATAATTAATAGGGTAAAACAAATTA-TTTGT-GGCTGATAATTACTAGATATTAATTTTTGTATTTTCTAT--TATGATACTT--GTCTGG--ATC-ACCCG-AACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------GAGCT--------CT----A-A--------------A----------CGTCGATGGTGAT-CCAGACCTA-CT--GC---TGA-CTG-A--C-----TG-TAGTTCCAGGATTCCAT-TT-TTGAGACAAGGGACTCTTGGGAATATG-G-ATTATGGTGAGCACAACA--TTgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|1 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatTCACTTCCTTTATAAAC-----GGCTCG-C--A-TTATGT-CCATT-AGAGCCTCAGCAGTAAGCCCGAGCCAGCG------C-TGGCTTCGCCTCGCgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaatcacttcctttataaacggctcgcattatgtccattagagcctcagcagtaagcccgagccagcgctggcttcgcctcgc
gi|10 : aaccggatctaactaatgttgacggcaattctttcaattatagtttaatttagtaaaattaacacatctaatgaatcctcttatagtatttcagcgtgcacgttcttatctattaggtaagtcccagcccccccgggttgcaacattgtactgtaagatccattcaatattaaaatatttaattttaccccaactatattaccatgataatacacttatcgcctgtatcatcatccttctcctcatttcttcttttatgtgttgctgatgacgcctgaaaaaacaaaaaccgctccaaaatgtagatttccggccacctcttttcgcattttctattatcgaagacctaaactaagacatgaacgtcactaactcgtacattttttcttgctccgtaagcttgaggctaggctatcatgatccgcagctgagttatttttgatcgacgagcaaaacaatgcaatgggattttaggaagccacaaatcctacttttaaaagtcagaaatttcaacaaaaattcatatatacgttgtcagtggttgatgaagaattatatggggaaaatgcaacgagtgcgttgctgttgacgtttgtttcaatatctggatgaaccggcttttacgtaagtcaaatgtaccaagtgtgtttctggagtaccttttatcaacgttattgaggtttgttttaccaaatatgggagaaacataattaatagggtaaaacaaattatttgtggctgataattactagatattaatttttgtattttctattatgatacttgtctggatcacccgaacgtttttgtatacgctgactcgagctctaaacgtcgatggtgatccagacctactgctgactgactgtagttccaggattccatttttgagacaagggactcttgggaatatggattatggtgagcacaacattgtatgagaatgtaattgagggtttacctactttaggtttaataaaggtcccctagtggaaccaccatgttttgtaaAGGGACCTCTGGG-AA-TG-A-ATT-TGGTGA-CA-ATTA--TTTCTTCTTGTAAAA-G-----GTTGGAG---CTCTATCACTTTCTTT-----T-----CCC-CG-CAAA-TTA-GT-C-----AGAG-CTC-ACAATG----CGAGACAGCGA-----T-TCGCGCTGGCTTGCTGCGC
gi|11 : A--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATGAA----ATAT----TTTTTTC---T-TCAAGTTATGG--GAA-CCATAATTTGAA-------------------------------------GGTATT-ATTTTTG--TTTTCCAC--TATG--ACTT-CGTCTGG--ATT-ATCCC-GACGTTT-TT-G-T----A--T-gt
gi|12 : T-G-T----T-CAAT----T-GGAT-GACGCT---TTTACGTAATTAACTTACGTA-AA--TGTAACTATTGTG----TTTCTGGAGTACCTTTTATC------AT-T----TTTTTTTCTCT-TCAAATTACGG--GAA-ACATAATTTAAAGGGGAA
gi|13 : G-TAGT--CTG----CCAT-TT-TA--GGCAAGGAA---------------A-AT---GGTGA-CA-AAAA--TTT-TACTTCTTAAA-GCTTTAGTTTGAA---TTCTGCCACTTCCTTT-----TA----CGCTTG-C--A-TTA-GT-C-AAA-AGAC-CTA-GCAGCG----C
gi|14 : AAAATGTAGAT--CCG-CCAC----TT-----CCGCATAT-TC--ATTAC-------ATG----ATACCAATACAT-A------G--ACATG-A-CCCCAC--------AC---ATCTTTCTTTCA-----------A---CA-----TT----------T-------TAA-ACTTG-AGGCT-AGGCC-TTAAATGAT--G--CA-tc
gi|15 : gGG--ATC-ATCCC-GACGTTT-GT-G-T----A--T-ACGACT--CT--------------C----------G---T--------AT----G-T--------------ATGTACATAATCGTCGG-AATGAT-CCAGA-CTATAC--ATTA-TGA-CTG-T--A-----TG-
gi|16 : ACCTCTGGA-AT----G-ATT--GGTGA-CATTA----TTTCTTCTTGT-AAA-A-----GTTGGA-------AGTC--TACATTT-----T-----CCCGCA-A--A-TTA-GT-C-A------A-CTC-ACAATG----CGAGACAGCG------TATCGCGCTGGCTCGgcggcgtagtaaggccaaatatttgg
gi|17 : TGG--ATC-ATCCC-GACGTTT-TTTG-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT----C-G--------------A----------CATCAT-GGTGAT-CCAGA-TTA-AC--GC---TGA-CTGAT--ATACATTG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTtg
gi|18 : C-ATCCC-GACG-TT-GT-G-T----A--T-A--ACGATCT--------------C----------G---T--------ATGTA-T-G--------------ACATAAT----CGTCGG-AATGAT-CCAGA-CTT-AC--ATTAATGA-CTG-T--A-----TG-
gi|19 : AATGTAGAT--CCG-CCAC----TT-----TCGCATTT-CT--AT-----------------A--------C-------------ACATT-A-CGTCAC--------AC---ATCTTTCTT-----------------------GTTT----------CA------TAA-GTTTG-AGGCT-AGGCC-gc
gi|2 : AACCGGA-CTAACTA-TGTTG---------CT----ATTA-A--TTAATTTAGTAA--TTAAAAC---TAATGA----CCTTATA-TATTTCA---TGC------TGATATAATAGG-AAGTCCC--CCCCCCCCTTTCCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGC-TGAAAAAAACAAA--ACC--TC-CAAAATGTAGAT--CCG-CCTC----TT-----TCGCATTT-CT--ATTAT-------A-G----A--------CAT-A------G--ACATC-A-CGTCAC--------AC---ATTTTTCTTTC----------------CG-----TT--------------------A-GCTTG-AGGCT-AGGC--T--AATGAT--G--CA-CTG---TATTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAAATCCTCTTTTAAAA------AGT----ACACAAAC---TTGT-ACTTGCACGTT-----TAGTTGA---AGA-ATT---T------GCG------TTC---TGCGTGCGTT-CTGT-GACG-TT-G-T----T-CAATA-CGTAAGTTAAA-------TTTACGTAAGT--------TA-AA--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATCAA----CG-T----TTTTTTT---T---AAA-TATGG--GAA-ACATAATTTAAAGGGAAAAA-AA--TA-TTTGT-G--TGA----TAC--AGTATT-ATTTTTG--TTTTCCAA--TATG--ACTT-CGTCTGG--ATC-ACTCC-GACGTTT-TT-G-T----A--T-ACGCTGA-CT--------------C----------G---T--------CT----C-G--------------A----------CGTCAT-GGTGAT-CCAGA-CTA-AC--GC---TGA-CTG-TCAA-----TG-TAGT--CAG----CCAT-TT-TT--GACAAGGGACTTCTGGA-AT-TG-G-ATT-TGGTGA-CATAAAA--TTT-TATTTGTTAAA-G-----GCTGGAA---TTTATTTACTTCCTTT-----TA----CGCTCG-C--A-TTA-GT-C-ATT-AGAG-CTC-GCAGTG----GGAG-CA------------CGCGCTGGCTCGCTGCGCTCa
gi|20 : --AATAGT--G--CA-CTG---TATTTTTGGATCG--GAGCAA--CTTTGCA----------AGGGA-GCCAC-ACATTCACGT-----A------AAT----ACACA-------TGT-ACTTGGAC
gi|22 : GTTT-GT-G-T----A--T-ACGCCTA-CT--------------C----------c
gi|22 : C-GACGTTT-GT-GGC----G--T-ACAT--A-CA--------------C----------A--------------------A--------------A----------CGTCGG-GATGAT-CCAGA-Ctccacaaacgacgtttgtggcgtacatacacaaacgtcgggatgatccagac
gi|22 : gtttgtgtatacgcctactctccacaaaGTCTGG--ATC-ATCCC-GACGTTT-GT-G-T----ATGT-ACGCC
gi|23 : gtttgtgtatacgcctactctccacaaacgacgtttgtC-ATCCCTGACGTTTTGT-G-T----A--T-ACGCTGA-CC-----------------------------T--------CTGAAAC-GTGAAGTATACACAAA----------CGTCGG-GATGAT-CCAGA-C
gi|23 : GTCTGG--ATC-ATCCC-GACGTTT-GT-G-T----A--T-ACTTCA------------------C----------G---T--------TT----CAG--------------A----------GGTCAG-
gi|24 : catccctgacgttttgtgtatacg-ATCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CTCTCCACAAATTTGGC----------G---TATA-----CT----CAA--------------A----------CGTCGG-GATGAT-CCA
gi|25 : C-ATTCC-AACGTTT-GT-G-T----A--T-GCGCCGA-CT--------------C----------
gi|25 : G--ATC-ATCCC-GCCGTTT-GT-G-T----A--T-ACACC-A-CT--------------tccacaaagtggtgtatacacaaacggcgggatgatc
gi|26 : cattccaacgtttgtgtatgcgccgactctccacaaGTCTCG--ATC-ATCCA-GACGTTT-GT-C-TTATCA--T-A---CGA-AT-------------------------G---A--------GT----C-G--------------AAG--------CGTTTT-GATGAT-CAAGA-C
gi|27 : CTGGCCATT-ATCCC-GACGTTT-GT---T----A--T-ACAT--A-CA--------------T----------G---TA-------AT----T-A--------------A----------TATCGG-GATTATCCCAGA-CTA-ta
gi|28 : CTCG-C--A-TTA-GT-C-ATT-AGAG-CTC-GCAATG----CGAGCCAGCGC-----T-TCTCGCTGGTTCGCTGCGCTC
gi|29 : -AGAG-CTC-GCAGTG----CGAGCCAGCGCTTCGCT-TCGCGCTGGCTCCCTGCGCTCg
gi|3 : AAA------AGT----ACACAAACGTATTGCGACTTGCACGTT-----TAGTTGA---AGATACT---TATTGCGGCGAAAAA-TGCAAACGAGTGCGTT-CTGT-GACGCTT-G-T----T-CAATA-T-T-GGAT-GACGC----TTT-------T--------TA-AA--TGTACCAAGTGTGT---TTTCTGGAGTA-CTTTTATAAA----AC-T----TTTTTTT---T-T-AAT-TATGG--AAACATATAATTTAAA-GGGAAAA-AA--TATTTTGTGG--TGA----TAC--AG----------------TTCCACTATATG--ACTTCCGTCTGG--ATCAACCCC-GACGTTT-TT-G-T----A--TCACGCTTA-CT--------------C----------G---T--------CT----C-G--------------A----------CGTCAT-GGTGAT-CCAGAGCTA-AC--ACA--TGACCTG-C--------TGATAGT--CAGAGC-CCGTGTT-TT--GACAA-GGACTTCTGGG-AT-TGTG-ATT-TGGTG--CATAAAAACTTT-TACTTGTTAAAGG-----GTTGGAGATTTTTAATCACTTCCTCC-----TTCTACCGCTCGAC--AGTTA-GTCC-ATTCAGAG-CT--GCAGTG----CGAGCCAg
gi|30 : TCTGG--ATC-ATCCC-GACGCTT-GT-G-A----A--T-ACGCC
gi|31 : aaacgtTCTGGG-ACG-ATCCC-GACGTTT-GT-G-T----A--T-ACGGAGA-CT--------------
gi|32 : CTGG--ATC-ACCCC-GACGTTT-GT-G-T----A--T-ACGCCGA-CT--------------C----------
gi|34 : GTCTGG--ATC-ATCCC-GACGTTT-GT-G-T----A--T-
gi|4 : GACGC-TGAAAAAAA-AAA--ACT--TC-CAAAATGT-GAT--CCG-CCAC----TT-----TCGCATTT-CTCTATTATGACGCCAA-T----A--------CATCA------GCTAC-TG-A-CGTCAC--------AC---ATCTTTCTTTCATCAGCACAATCA---CAAT-GTTT----------CG------TAA-GCTTG-AGGCT-AGGCC-T--AATGAT--G--CA-CTG---CAGTTTTTGATCGA-GAGCAA--CAATGCAA-GGGATCT-AGGGA-GCCACAAA-TCCACTTTTAAAA------AGT----ACACAATC---TTGG-GCTTGCAAGTT-----TAGTTGA---ATA-ATT---T------GCGGGAAAATGCAA-CGAGTGCCTT-CTGT-GACG-TT-G-T----T-CAATA-T-T-GGAT-GACGCT---TTTACGTAAGT--------TA-AA--TGTACCAAGTGTG----TTTCTGGAGTACCTTTTATCAA----CT-T----TTTTTTT---T-TTAAT-TATGG--GAA-ACATAATTTAAAGGGGGAAA-AA---A-ATTGT-G--TGA----TAC--GGTATT-ATta
gi|5 : tgatGAGGC-TGGGAAAAATAAACCACC--TCGCAAAATGTAGAT--CCG-GCAC----TTGAAAATCGCATTT-CT--ATTATG------A-GCAATA--------CCT-A------G--ACATGGA-CGTCAC--------ACTAGATCATCTACACA-----------ATCACGAATGTTT----------CGTACATGTAAAGCTTGCAGGCTTAGGCC-T--AATACT--GATCA-CTGG--CATTTTTTGATCGAAGAGCAA--CAATGCAA-GGGATCT-AGGGAGGCCAC-AAATCCACTTTT
gi|6 : ctttaaatctaattgggatatttatcttttacatatatacatgtaatcattctcctgttttcactttctcatttctctttgttttgcaattttgctgtT-CT--ATTAT-------G-G----AAGATATC-CAT-A------G--ACATG-A-CGTCAC--------AC---ATCTGTCTTTCA-----------G---CAAC-GTTTGCAAATTTTGT-------TAA-ACTTG-AGGCT-AGACC-T--AATGAT--A--CA-CTG---TATTTTTGGATCG--GAGCAT--CTTTGCAA-GGGAACT-A
gi|6 : ------GCGGGAAA-TGATC-CAAGCGCTTT-CTGT-GACG-CT-GATCGGAT-CAA-A-C-T-AGTT-CT-------TCTCTGTATGT--------TACGATTTGTA-----TGTGCAGATTTCCGGGG-----TTTA------------------TTTTT---T-TCAAA-CAcaaatcacacgatcttcgccgcgggaaatgatccaagcgctttctgtgacgctgatcggatcaaactagttcttctctgtatgttacgatttgtatgtgcagatttccggggtttatttttttcaaacaaccatttt
gi|7 : tctattatggaagatatccatagacatgacgtcacacatctgtctttcagcaacgtttgcaaattttgttaaacttgaggctagacctaatgatacactgtatttttggatcggagcatctttgcaagggaactacaaatcacacgatcttcgccAAA-AA--GA-TTTGT-G--TGA----TAC--GGTATT-AGTTTTG--TTTTCCAC--TCTG--ACTT-CGTCTGG--ATC-ATCCC-GACGTTT-TT-G-T----A--T-ACGCGGA-CT--------------C----------G---T--------CT----C-G--------------A----------CGTCGT-GATAAT-CCAGA-CTA-AC--GC---TGA-CTG----A-----TG-TATT--CAG----CCAG-TT-TT--GACAAGGGACTTCTGGG-AT-TG-G-ATT-TGGTGA-CACAAAA--TTT-TTCTTGATAAA-G-----GTTGTAG---TTCTGTCACT---TTT-----T-----CCCACG-C--A-TTA-GT-C-ATT-AGAG-CTC-GCAGGG-----------------------CGCGCTGGCTCGCTGTGCTaccatttt
gi|8 : C-ATCTC-GAGGTTT-GT-G-T----A--T-ACGCCGA-CT--------------CTCCACAAATTG---TGGCGTATACT----CAA--------------A----------CGTCGG-GATGAT-CCAAA-CTA-ACTTGT---CGT-ATGAT--A-----TA-TAGT----G----GCAT-TTAGC--GACAACAGACt
gi|9 : T--------------C----------G------------CT----C-G--------------A----------CGTCTA--ATGAT-CCAGA-CTA-AA--GC---TGA-CTG----A-----TG-TCGT--CAG----TCAT-TT-TT--GACA-GGGA-TTCTGGG-AT-TG-GGATT-TGGTGA-CAACAAA--TTT-TTCTGTTTAAA-G-----GTTGTAG---TTCTGTCACTTACTTT-----T------TCCCG-C--A-Tcatgaatgttaacgacaaaaaagggtatgctgggatatttttcatatcttttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTAAATCTAATTGGGATATTTATCTTTAATACCAATATATATTATGTAATCACTTCTCCCAAACCTCTTTTCATTT
Unaligned ( gi|33 ): AAAAACAACCTTTGTAAAGCATATATATTGCATC