lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6666666666666 11 2 1 55555555555 99999999999999999999999999999999999 1
lowQualScore : 8 44 88 888 888888888 2 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 3333333333333 9 4 00 1 1 9 3 0 3 22222222222 6 33333333333333333333333333333333333 5
lowQualScore : . .. .. ... ......... . .. .................................................................................................... . ............. . . .. . . . . . . ........... . ................................... .
lowQualScore : 8 66 88 555 999999999 9 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 0000000000000 0 7 33 0 0 0 3 7 7 00000000000 0 00000000000000000000000000000000000 0
consensus : GTTTCTACTTTCTGCA--AGCTTTTGA---GAT-------G-ACCA-CTTGTGAGA--TAC-------------TAA------------T---A-ATAGT-ACGT-G----CATATA---GT----------ATCTCA---CAAG--G-C--C----AA-CTTACAGAAAGTAGAAACTGGACG-C-C-GAATAACTTATNAAGGTGAT-AGTGG-GAAAAATNA-TTC-G-AT--TTGGGAAAATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
Reference ( gi|3 ) : GTTTCTACTTCCTGTA--AGCGTTTGA---GAT-------T-ACCA-CTTGTGAGA--TAC-------------TAA------------T---AGATAGT-ACAT-G----CATACA---GT----------ATCTCA---CAAG------------AATCTTACAGAAAGTAGAAACTGGACG-TGCAGAACAACTTGTAAAGGTAATAAGCGG-GGAAAATCA-TTC---AT--TTGGGGAA---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCA
gi|9 : GTTTCTTTTTTCTGCA--AACTTTTGA---GAT-------A-ACAA-CTGGTGATA--TAC-------------AAA------------T---A-----T-ACAG-A----CATACA------------------TCA----AA----------------CTTCTAGAAAGTAGAATCTGGCTA-TTCAGAACAACTT
gi|8 : caGTTTCTACTTTCTACA--AA---TTGA---GAT-------G-ACAA-CTTGTGAGA--TAC-------------TAA------------TTAAAGTTAGT-ATA--GATCTCACA-A---GTGGTCAGATTGATATCACTTCAAA------------AA-CTGATACAAAGTAGAAAGTGGATG-
gi|16 : aGTTTCTACTTTCTGCA--AGCTTCTGA---GAT-------G-ACCA-TTTGCGACA--TAC-------------TA
gi|4 : agctaGTTTCTACTTTCTACA--AA---TTGA---GAT-------G-ACAA-CTTGTGAGA--TAC-------------TAA------------T---
gi|14 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaGTTTCTACTATTTGCA--GGC-TTTAAT--AAT-------G-ACCA-CTTGTGAGA--TAC-------------TAA------------T---ATATt
gi|8 : ttaTTTCTACTT--TGTATCAGTTTTTGAAGTGATATCAATCTGACCA-CTTGTGAGA--T-C-------------T--------------------ATACTAACTT-T----AAT-TA---GT----------ATCTCA---CAAGTTGTCATCTC--AAT-TTGTAGAAAGTAGAAACT
gi|1 : TTTCTACTTTCTGAA--AGCTTTAAA---GAT-------G-ACCA-CTTGCGAGA--TAC-------------TAA------------T---ACATgtggatg
gi|5 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatTTTCTACTTTCTTTA--AACTTTTGA---GAT-------G-ACTA-CTTGTGAGATTTAC-------------TAG------------T-------------------------------C----------ATCTCA----AAG------------G--CTTACAGAAAGTAGgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|1 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtTTCAACTTTCTGTA--AACTTTTGA---GATTAA----T-ACTA-CCAGTGAGA--TACAAATATATGCTTTTAAATTATATTGTTTT---AAACAGT--CAT-G----TAT-TA---GT----------ATCTCG---CAAGTGGTCATCTTTAAAGCTTTCAGAAAGTAGAA--------------AATTACTTTTGAAGATGATTGGTGG-GGACTATGG-TTCTATAT--TTG
gi|15 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatTTCTACTTTCTGTA--AGCTTTTGA---GAT-------G-ACCA-CATG
gi|6 : cattttgaatagccagTCTAGTTTCTGTA--AGATTTTGA---GAT---------GCCATCTTGTGAGA--TAC-------------Tag
gi|5 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatgCTACTTTCTGTA--AGCCTTTGA---GAT-------G-ACTA----GT-AAA--T-C-------------TCA------------C---AAGTAGT---------------------C----------ATCTCA---AAAG---------------TTTAAAGAAAGTAGAAAtaaa
gi|19 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtGA---AAT-------T-ACCA-CTTGTGAGA--TAT-------------TAA------------T---ATAT
gi|18 : AT-------G-ACCA-CTTGTGAGA--TAC-------------TAA------------T---A-----T-ACAT-gt
gi|16 : aTAGT-ATGTCG----CAAATG---GTC---------ATCTCA---GAAG---------------CTTGCAGAAAGTAGAAACTAGttgt
gi|7 : agAAT-ACGT-G----AATACATTAGT----------ATCTCA---CATG------------TAGGTTACAGAAAACGGAAACT-GACGACGCCGAGTAACTTATTAA---AACGAGTGGAGAAAAATTAGTTCGG-ATAATTGGGAAAATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|15 : ----CATGTG---GTC---------ATCTCA---AAAG---------------CTTACAGAAAGTAG-AACTGGg
gi|4 : cattttgaatagA---GT----------ATCTCA---CAAGTTGTCATCTC--AAT-TTGTAGAAAGTAGAAACTGag
gi|6 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgaA---GT----------ATCTCA---CAAGATGGCATCTCAAAATCTTACAGAAACTAGACATTGG---------------TTATAAAGGTGAT-AGAAG-GAAAACTCA-T-----AT--TTaatt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ACAACCACCTGAAGTGTGAATAGTATGGACAAATATTTTACATGCATAATGCCCCATCCTTTTTTATATCATATGAAAAGAAAATATAGGAGTTCTGAGCCAATGAATTATCCACAATATGTGATATTCCCGCCAATCATCTCCAAAGGTTCTTCTATTTTCTGCTAGCTGCTGTAATGACCACTTAAGGGAGACGAATGTATGGCTTTAA
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG
Unaligned ( gi|17 ): GATACCACTTATGAGATTATACAGGTCATATCAAAAGCTTGCAAAAAGTAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222 555555555555555555 1111 222222 11 222 1 333
lowQualScore : 444 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 000000000 1 000000000000000000 1 0 1 3 8888 8 1 555555 33 111 2 4 5 111 2
lowQualScore : ... . ................................................................................................. ......... . .................. . . . . .... . . ...... .. ... . . . ... .
lowQualScore : 777 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000000 7 333333333333333333 0 8 4 2 6666 0 0 555555 88 000 5 0 5 000 5
consensus : GTTTCTACTTTCTGCAAGCTTTTGAGAT---GACCA-CTTGTGAGATACTAATA--------------------------A--AGTACGTGCATA---TAGT-ATCTCACA---A--G---GT----C--------A----------A---CTT---------ACAGAAAGTAGAAACTG--G--AC--GC-GAACAACTTATGAAGGTGA-T-GGCGG-GAAAAATCA-TTC--AT--TTGGGGAAATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
Reference ( family-6157 ) : GTTTCTACTTTCTGCAAGCTTTTGAGAT---GACCA-CTTGTGAGATACTAATA--------------------------A-TAGTACGTGCATA---TAGT-ATCTCACA---A--G---GC----C--------A----------A---CTT---------ACAGAAAGTAGAAACTG--G--AC--GCCGAATAACTTATNAAGGTGA-T-AGTGG-GAAAAATNA-TTCG-AT--TTGGGAAAATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|1 : TTCAACTTTCTGTAAACTTTTGAGATTAATACTA-CCAGTGAGATACAAATATATGCTTTTAAATTATATTGTTTTAAA-CAGT-CATGTAT----TAGT-ATCTCGCA---AGTG---GT----CATCTTTAAA----------G---CTT---------TCAGAAAGTAGAA-----------------AATTACTTTTGAAGATGATT-GGTGG-GGACTATGG-TTCT-AT--
gi|1 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatTTTCTACTTTCTGAAAGCTTTAAAGAT---GACCA-CTTGCGAGATACTAATA--------------------------
gi|14 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatGTTTCTACTATTTGCAGGCTTTAATAAT---GACCA-CTTGTGAGATACTAATA--------------------------catgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|15 : ttaTTCTACTTTCTGTAAGCTTTTGAGAT---GACCA-CATGtat
gi|16 : cattttgaatagccagGTTTCTACTTTCTGCAAGCTTCTGAGAT---GACCA-TTTGCGACATACTAag
gi|17 : agctaCTACTTTTTGCAAGCTTTTGATAT---GACC----TGTATAAT-CTCATA--------------------------AGTGGTA
gi|18 : gaAT---GACCA-CTTGTGAGATACTAATA--------------------------
gi|19 : aGAAAT---TACCA-CTTGTGAGATATTAATA--------------------------tacatttgt
gi|2 : TTCTATTTTCTGCTAGCTGCTGTAAT---GACCA-CTTAAGGGAGACGAATtatgt
gi|3 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaattatccacaatatgtgatattcccgccaatcatctccaaaggttcGTTTCTACTTCCTGTAAGCGTTTGAGAT---TACCA-CTTGTGAGATACTAATAG-------------------------A-TAGTACATGCATA---CAGT-ATCTCACA---A--G------------------A----------AT--CTT---------ACAGAAAGTAGAAACTG--G--ACGTGCAGAACAACTTGTAAAGGTAA-TAAGCGG-GGAAAATCA-TTC--AT--TTGGGGAA---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCgtatggctttaa
gi|4 : ---TAGT-ATCTCACA---A--GTT-GT----C--------ATCTCA-----A---TTT---------GTAGAAAGTAGAAACT----------GTCG----ACTTATGA---T---T-GGTGG-GAAGAa
gi|4 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttcGTTTCTACTTTCTACAAA---TTGAGAT---GACAA-CTTGTGAGATACTAATatt
gi|5 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaTTTCTACTTTCTTTAAACTTTTGAGAT---GACTA-CTTGTGAGAT--T-----------------------------------TAC----------TAGTCATCTCA-A---A--G---G-----------------------------CTT---------ACAGAAAGTAGt
gi|6 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtAGT-ATCTCACA---A--GATGGCATCTC--------A----------AAATCTT---------ACAGAAACTAGACATTG--G----------------TTATAAAGGTGA-T-AGAAG-GAAAACTCA-T----AT--TT
gi|6 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaTCTAGTTTCTGTAAGATTTTGAGAT---G-CCATCTTGTGAGATACTtaaa
gi|7 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatgAATACGTGAATACATTAGT-ATCTCACATGTA--G---G------------------------------TT---------ACAGAAAACGGAAACTGACG--AC--GCCGAGTAACTTATTAAAACGA----GTGGAGAAAAATTAGTTCGGATAATTGGGAAAATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGCtaaa
gi|8 : GTTTCTACTTTCTACAAA---TTGAGAT---GACAA-CTTGTGAGATACTAATT--------------------------A-AAGTTAG----TA---TAG--ATCTCACA---AGTG---GT----C--------AGATTGATATCA---CTTCAAAAACTGATACAAAGTAGAAAGTG--G--AT--Gg
gi|9 : aGTTTCTTTTTTCTGCAAACTTTTGAGAT---AACAA-CTGGTGATATACAAATA-------------------------------TACAGACATA---CA------TCA---------------------------A----------A---CTT---------CTAGAAAGTAGAATCTG--GCTAT--TCAGAACAACTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111111 66666666666666666 111 33333333333 1 1 222
lowQualScore : 444 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777 777 11 44444444444444444 6 2 1 999 2 6 4 55555555555 3 888 1 1 5 111 1
lowQualScore : ... . ..................................................................................................... ......... ... .. ................. . . . ... . . . ........... . ... . . . ... .
lowQualScore : 777 9 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888888888 888 88 44444444444444444 0 2 0 222 2 7 2 44444444444 3 888 0 0 5 555 0
consensus : GTTTCTACTTTCTGCAAGCTTTTGAGAT---GACCA-CTTGTGAGATACTAA----------TAA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------C--------A----------A---CTT---------ACAGAA---AGTAGAAACTG--G--ACG----GAACGACTTATGAAGATGA-T-GGCGG-GAAAAATCA-TTC---ATA-TTGGGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
Reference ( family-6157 ) : GTTTCTACTTTCTGCAAGCTTTTGAGAT---GACCA-CTTGTGAGATACTAA----------TAA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------C--------A----------A---CTT---------ACAGAA---AGTAGAAACTG--G--ACGC---GAACAACTTATGAAGGTGA-T-GGCGG-GAAAAATCA-TTC---AT--TTGGGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
gi|1 : TTCAACTTTCTGTAAACTTTTGAGATTAATACTA-CCAGTGAGATACAAATATATGCTTTTAA--ATTATATTGTTTTAAACAGTCATGTAT----TAGT-ATCTCGCA---AGTG--GT-------CATCTTTAAA----------G---CTT---------TCAGAA---AGTAGAA-----------------AATTACTTTTGAAGATGATT-GGTGG-GGACTATGG-TTCTATAT--TTG
gi|1 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatTTTCTACTTTCTGAAAGCTTTAAAGAT---GACCA-CTTGCGAGATACTAA----------TA
gi|14 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatGTTTCTACTATTTGCAGGCTTTAATAAT---GACCA-CTTGTGAGATACTAA----------TAcatgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|15 : ttaTTCTACTTTCTGTAAGCTTTTGAGAT---GACCA-CATGtat
gi|16 : cattttgaatagccagGTTTCTACTTTCTGCAAGCTTCTGAGAT---GACCA-TTTGCGACATACTAag
gi|17 : agctaCTACTTTTTGCAAGCTTTTGATAT---GACC
gi|18 : gataccacttatgagattatacaAT---GACCA-CTTGTGAGATACTAA----------TA
gi|19 : aGAAAT---TACCA-CTTGTGAGATATTAA----------TAtacatttgt
gi|2 : ----------TAA--AGC-----------------CATACAT----TCGT-CTCCCTTA---A--GTGGT-------C--------A---------------TT---------ACAGCAGCTAGCAGAAAATA--G--AAG-----AAC--CTT-TGGAGATGA-TTGGCGG-G-AATATCA---C---ATA-TTGTGGATAATtatgt
gi|2 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaTTCTATTTTCTGCTAGCTGCTGTAAT---GACCA-CTTAAGGGAGACGAA----------Ta
gi|3 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaattatccacaatatgtgatattcccgccaatcatctccaaaggttcGTTTCTACTTCCTGTAAGCGTTTGAGAT---TACCA-CTTGTGAGATACTAA----------TAGATAGTA----------------CATGCATA---CAGT-ATCTCACA---A--G--------------------A----------AT--CTT---------ACAGAA---AGTAGAAACTG--G--ACGTGCAGAACAACTTGTAAAGGTAA-TAAGCGG-GGAAAATCA-TTC---AT--TTGGGGA-A---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCgtatggctttaa
gi|4 : ---TAGT-ATCTCACA---A--GTTGT-------C--------ATCTCA-----A---TTT---------GTAGAA---AGTAGAAACTG--T------------CGACTTATGA---T---T-GGTGG-GAAGAa
gi|4 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttcGTTTCTACTTTCTACAAA---TTGAGAT---GACAA-CTTGTGAGATACTAA----------Tatt
gi|5 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaTTTCTACTTTCTTTAAACTTTTGAGAT---GACTA-CTTGTGAGAT--T-------------------TA----------------C----------TAGTCATCTCA-A---A--G--G--------------------------------CTT---------ACAGAA---AGTAGt
gi|6 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtAGT-ATCTCACA---A--G--ATGGCATCTC--------A----------AAATCTT---------ACAGAA---ACTAGACATTG--G----------------TTATAAAGGTGA-T-AGAAG-GAAAACTCA-T-----AT--TT
gi|6 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaTCTAGTTTCTGTAAGATTTTGAGAT---G-CCATCTTGTGAGATACT------------TAA--Ataaa
gi|7 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatg--AATA----------------CGTGAATACATTAGT-ATCTCACATGTA--G--GT---------------------------------T---------ACAGAA---AACGGAAACTGACG--ACGCC--GAGTAACTTATTAAAACGA----GTGGAGAAAAATTAGTTCGG-ATAATTGGGAA-AATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|8 : GTTTCTACTTTCTACAAA---TTGAGAT---GACAA-CTTGTGAGATACTAAT---------TAA--AGTT----------------AG----TA---TAG--ATCTCACA---AGTG--GT-------C--------AGATTGATATCA---CTTCAAAAACTGATACAA---AGTAGAAAGTG--G--ATGg
gi|9 : aGTTTCTTTTTTCTGCAAACTTTTGAGAT---AACAA-CTGGTGATATACAAA----------TA-----TA----------------CAGACATA---CA------TCA-----------------------------A----------A---CTT---------CTAGAA---AGTAGAATCTG--GCTATTCA--GAACAACTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 6666666666666666666 111 222222 11 1 1 222
lowQualScore : 0 555 3 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777777777 777 4 2222222222222222222 6 7 1 999 2 6 4 6 2 333333 11 2 0 888 1 1 5 111 1
lowQualScore : . ... . . ............................................................................................ ......... ... . ................... . . . ... . . . . . ...... .. . . ... . . . ... .
lowQualScore : 4 000 1 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888888888 888 5 9999999999999999999 0 8 0 222 2 7 2 7 2 888888 88 5 0 888 0 0 5 555 0
consensus : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A--CG----GAACGACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
Reference ( family-6157 ) : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A--CG----GAACGACTTATGAAGATGA-T-GGCGG-GAA-AAATCA-TTC--ATA-TTGGGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
gi|1 : TTCAACTTTCTGTAAACTTTTGAGATTAATACTA-CCAGTGAGATACAAA-TATATGCTTTTAA--ATTATATTGTTTTAAACAGTCATGTAT----TAGT-ATCTCGCA---A--GTGGT-------CATCTTTAAA--G---CTT---------TCAGAA---AGTAGAAA-------------------ATTACTTTTGAAGATGATT-GGTGG-GGA-CTATGG-TTCT-ATA-TT
gi|1 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaTTTCTACTTTCTGAAAGCTTTAAAGATGA---CCA-CTTGCGAGATACTAA-T----------A
gi|14 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatGTTTCTACTATTTGCAGGCTTTAATAATGA---CCA-CTTGTGAGATACTAA-T----------Acatgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|15 : ttaTTCTACTTTCTGTAAGCTTTTGAGATGA---CCA-CATGtat
gi|16 : cattttgaatagccagGTTTCTACTTTCTGCAAGCTTCTGAGATGA---CCA-TTTGCGACATACTAag
gi|17 : agctaCTACTTTTTGCAAGCTTTTGATATGA---CC
gi|18 : gataccacttatgagattatacaATGA---CCA-CTTGTGAGATACTAA-T----------A
gi|19 : aGAAATTA---CCA-CTTGTGAGATATTAA-T----------Atacatttgt
gi|2 : -T----------AA--AGC-----------------CATACAT----TCGT-CTCCCTTA---A--GTGGT-------CA---------------TT---------ACAGCAGCTAGCAGAAAATA--G--A---A----GAAC--CTT-TGGAGATGATT-GGCGG-G-A-ATATCA---C--ATA-TTGTGGATAATtatgt
gi|3 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaGTTTCTACTTCCTGTAAGCGTTTGAGATTA---CCA-CTTGTGAGATACTAA-T----------AGATAGTA----------------CATGCATA---CAGT-ATCTCACA---A--G------------A----------AT--CTT---------ACAGAA---AGTAGAAACTG--G--A--CGTGCAGAACAACTTGTAAAGGTAA-TAAGCGG-GGA-AAATCA-TTC--AT--TTGGGGA-A---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCa
gi|4 : ---TAGT-ATCTCACA---A--GTTGT-------CATCTCA-----A---TTT---------GTAGAA---AGTAGAAACTG--T--------------CGACTTAT---GAT---T-GGTGG-GAAGAGAACA--TA--ATG-TTGTGGA-a
gi|4 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttaGTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAA-T----------att
gi|5 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaTTTCTACTTTCTTTAAACTTTTGAGATGA---CTA-CTTGTGAGAT--T--------------------TA----------------C----------TAGTCATCTCA-A---A--G--G------------------------CTT---------ACAGAA---AGTAGt
gi|6 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtAGT-ATCTCACA---A--G--ATGGCATCTCA----------AAATCTT---------ACAGAA---ACTAGACATTG--G------------------TTATAAAGGTGA-T-AGAAG-GAA-AACTCA-T
gi|6 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatTCTAGTTTCTGTAAGATTTTGAGATG----CCATCTTGTGAGATACT---T----------AA--Ataaa
gi|7 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatg--AATA----------------CGTGAATACATTAGT-ATCTCACATGTA--G--GT-------------------------T---------ACAGAA---AACGGAAACTGACG--A--CGCC--GAGTAACTTATTAAAACGA----GTGGAGAA-AAATTAGTTCGGATAATTGGGAA-AATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|8 : GTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAATT----------AA--AGTT----------------AG----TA---TAG--ATCTCACA---AGTG--GT-------CAGATTGATATCA---CTTCAAAAACTGATACAA---AGTAGAAAGTG--G--A--TG----g
gi|9 : aGTTTCTTTTTTCTGCAAACTTTTGAGATAA---CAA-CTGGTGATATACAAA-T----------A-----TA----------------CAGACATA---CA------TCA---------------------A----------A---CTT---------CTAGAA---AGTAGAATCTG--GCTATTCA----GAACAACTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 6666666666666666666 111 222222 1 1 222
lowQualScore : 0 555 3 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777777777 777 4 2222222222222222222 6 7 1 999 2 6 4 999 1 111111 88 1 0 888 1 1 5 111 1
lowQualScore : . ... . . ............................................................................................ ......... ... . ................... . . . ... . . . ... . ...... .. . . ... . . . ... .
lowQualScore : 4 000 1 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888888888 888 5 9999999999999999999 0 8 0 222 2 7 2 222 0 555555 33 0 0 888 0 0 5 555 0
consensus : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A--CG----GAACGACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
Reference ( family-6157 ) : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A--CG----GAACGACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
gi|1 : TTCAACTTTCTGTAAACTTTTGAGATTAATACTA-CCAGTGAGATACAAA-TATATGCTTTTAA--ATTATATTGTTTTAAACAGTCATGTAT----TAGT-ATCTCGCA---A--GTGGT-------CATCTTTAAA--G---CTT---------TCAGAA---AGTAGAAA-------------------ATTACTTTTGAAGATGATT-GGTGG-GGA-CTATGG-TTCT-ATA-TT
gi|1 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaTTTCTACTTTCTGAAAGCTTTAAAGATGA---CCA-CTTGCGAGATACTAA-T----------A
gi|14 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatGTTTCTACTATTTGCAGGCTTTAATAATGA---CCA-CTTGTGAGATACTAA-T----------Acatgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|15 : ttaTTCTACTTTCTGTAAGCTTTTGAGATGA---CCA-CATGtat
gi|16 : cattttgaatagccagGTTTCTACTTTCTGCAAGCTTCTGAGATGA---CCA-TTTGCGACATACTAag
gi|17 : agctaCTACTTTTTGCAAGCTTTTGATATGA---CC
gi|18 : gataccacttatgagattatacaATGA---CCA-CTTGTGAGATACTAA-T----------A
gi|19 : aGAAATTA---CCA-CTTGTGAGATATTAA-T----------Atacatttgt
gi|2 : -T----------AA--AGC-----------------CATACAT----TCGT-CTCCCTTA---A--GTGGT-------CA---------------TT---------ACAGCAGCTAGCAGAAAATA--G--A---A----GAAC--CTT-TGGAGATGATT-GGCGG-G-A-ATATCA---C--ATA-TTGTGGATAATtatgt
gi|3 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaGTTTCTACTTCCTGTAAGCGTTTGAGATTA---CCA-CTTGTGAGATACTAA-T----------AGATAGTA----------------CATGCATA---CAGT-ATCTCACA---A--G------------A----------AT--CTT---------ACAGAA---AGTAGAAACTG--G--A--CGTGCAGAACAACTTGTAAAGGTAA-TAAGCGG-GGA-AAATCA-TTC--AT--TTGGGGA-A---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCa
gi|4 : ---TAGT-ATCTCACA---A--GTTGT-------CATCTCA-----A---TTT---------GTAGAA---AGTAGAAACTG--T--------------CGACTTAT---GAT---T-GGTGG-GAAGAGAACA--TA--ATG-TTGTGGA-a
gi|4 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttaGTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAA-T----------att
gi|5 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaTTTCTACTTTCTTTAAACTTTTGAGATGA---CTA-CTTGTGAGAT--T--------------------TA----------------C----------TAGTCATCTCA-A---A--G--G------------------------CTT---------ACAGAA---AGTAGt
gi|6 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtAGT-ATCTCACA---A--G--ATGGCATCTCA----------AAATCTT---------ACAGAA---ACTAGACATTG--G------------------TTATAAAGGTGA-T-AGAAG-GAA-A----A-CTC--ATA-TT
gi|6 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaTCTAGTTTCTGTAAGATTTTGAGATG----CCATCTTGTGAGATACT---T----------AA--Ataaa
gi|7 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatg--AATA----------------CGTGAATACATTAGT-ATCTCACATGTA--G--GT-------------------------T---------ACAGAA---AACGGAAACTGACG--A--CGCC--GAGTAACTTATTAAAACGA----GTGGAGAA-AAATTAGTTCGGATAATTGGGAA-AATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|8 : GTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAATT----------AA--AGTT----------------AG----TA---TAG--ATCTCACA---AGTG--GT-------CAGATTGATATCA---CTTCAAAAACTGATACAA---AGTAGAAAGTG--G--A--TG----g
gi|9 : aGTTTCTTTTTTCTGCAAACTTTTGAGATAA---CAA-CTGGTGATATACAAA-T----------A-----TA----------------CAGACATA---CA------TCA---------------------A----------A---CTT---------CTAGAA---AGTAGAATCTG--GCTATTCA----GAACAACTT
blockSeqs : . T T AAAGTTAGTATAGATCTCACAAGTGGTCAGATTGATATCA CAAAAACTG GCT A GACGTGCAGAACA G G G TT C A G GAG C GTTCGG AA G . ATG C T A A G
blockSeqs : . . . AGATAGTACATGCATACAGTATCTCACAAGAAT . . C ACGACGCCGAGTA A A A TA C . A AT C TTC A T .
blockSeqs : . . . AAAGCCATACATTCGTCTCCCTTAAGTGGTCA . . C GCTATTCAGAACA A A G T T . A AA C CTC G G .
blockSeqs : . . . TACTAGTCATCTCAAAGG . . T GAAGAAC A T G T A . A AA T TA A
blockSeqs : . . . ATACAGACATACATCAAA . . C TCG . . . . T . . A . C .
blockSeqs : . . . . . G G
blockSeqs : . . . . . C
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : *** GATCAGAACG********* T** TTC***
originalCons : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A--CG----GAACGACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
finalCons : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTGGATCAGAACG---------ACTTATGAAGATGAT--GGCGG-GAA-ANATCATTC---ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 666666666666666666 111 222222 1 1 222
lowQualScore : 0 555 3 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777777777 777 4 666666666666666666 6 7 1 999 2 6 4 999 1 111111 88 1 0 888 1 1 5 111 1
lowQualScore : . ... . . ............................................................................................ ......... ... . .................. . . . ... . . . ... . ...... .. . . ... . . . ... .
lowQualScore : 4 000 1 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888888888 888 5 777777777777777777 0 8 0 222 2 7 2 222 0 555555 33 0 0 888 0 0 5 555 0
consensus : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A-T---CAGAACAACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
Reference ( family-6157 ) : GTTTCTACTTTCTGCAAGCTTTTGAGATGA---CCA-CTTGTGAGATACTAA-T----------AA--AGTA----------------CGTGCATA---TAGT-ATCTCACA---A--G--GT-------CA----------A---CTT---------ACAGAA---AGTAGAAACTG--G--A-T---CAGAACGACTTATGAAGATGA-T-GGCGG-GAA-ANATCA-TTC--ATA-TTGNGGA-AATGGGGGAATGCGCATCANANTTACACAGGCTCATTGTNACTGC
gi|1 : TTCAACTTTCTGTAAACTTTTGAGATTAATACTA-CCAGTGAGATACAAA-TATATGCTTTTAA--ATTATATTGTTTTAAACAGTCATGTAT----TAGT-ATCTCGCA---A--GTGGT-------CATCTTTAAA--G---CTT---------TCAGAA---AGTAGAAA--------A-T---T------ACTTTTGAAGATGATT-GGTGG-GGA-CTATGG-TTCT-ATA-TT
gi|1 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaTTTCTACTTTCTGAAAGCTTTAAAGATGA---CCA-CTTGCGAGATACTAA-T----------A
gi|14 : acctgtagtatggatagcatttatagatcttatctacaccccccccccttatattccaagaaataaatcaaatatagaaccatagtccccaccaatcatcttcaaaagtaatGTTTCTACTATTTGCAGGCTTTAATAATGA---CCA-CTTGTGAGATACTAA-T----------Acatgactgtttaaaacaatataatttaaaagcatatatttgtatctcactggtagtattaatctcaaaagtttacagaaagttgaa
gi|15 : ttaTTCTACTTTCTGTAAGCTTTTGAGATGA---CCA-CATGtat
gi|16 : cattttgaatagccagGTTTCTACTTTCTGCAAGCTTCTGAGATGA---CCA-TTTGCGACATACTAag
gi|17 : agctaCTACTTTTTGCAAGCTTTTGATATGA---CC
gi|18 : gataccacttatgagattatacaATGA---CCA-CTTGTGAGATACTAA-T----------A
gi|19 : aGAAATTA---CCA-CTTGTGAGATATTAA-T----------Atacatttgt
gi|2 : -T----------AA--AGC-----------------CATACAT----TCGT-CTCCCTTA---A--GTGGT-------CA---------------TT---------ACAGCAGCTAGCAGAAAATA--G--A------AGAAC--CTT-TGGAGATGATT-GGCGG-G-A-ATATCA---C--ATA-TTGTGGATAATtatgt
gi|3 : acaaccacctgaagtgtgaatagtatggacaaatattttacatgcataatgccccatccttttttatatcatatgaaaagaaaatataggagttctgagccaatgaGTTTCTACTTCCTGTAAGCGTTTGAGATTA---CCA-CTTGTGAGATACTAA-T----------AGATAGTA----------------CATGCATA---CAGT-ATCTCACA---A--G------------A----------AT--CTT---------ACAGAA---AGTAGAAACTG--G--A-CGTGCAGAACAACTTGTAAAGGTAA-TAAGCGG-GGA-AAATCA-TTC--AT--TTGGGGA-A---GGGGAATATGTATCAAAATT-CATAAGCTCATTGTTACTGCa
gi|4 : ---TAGT-ATCTCACA---A--GTTGT-------CATCTCA-----A---TTT---------GTAGAA---AGTAGAAACTG-------T--------CGACTTAT---GAT---T-GGTGG-GAAGAGAACA--TA--ATG-TTGTGGA-a
gi|4 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttaGTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAA-T----------att
gi|5 : aggcacctgaagtgtggatagcttatacacatgtccatagatctatctctcaacccgatggaaaataaatatagaaccaataatttatccacaacattatgttctcttcccaccaatcataagtcgacaTTTCTACTTTCTTTAAACTTTTGAGATGA---CTA-CTTGTGAGAT--T--------------------TA----------------C----------TAGTCATCTCA-A---A--G--G------------------------CTT---------ACAGAA---AGTAGt
gi|6 : gcataacgtgtgtagatgatacgtgacctccccctattgaaaaaaataaacatagaaccaataattcaaaataagagcaattgataagtcgtAGT-ATCTCACA---A--G--ATGGCATCTCA----------AAATCTT---------ACAGAA---ACTAGACATTG--G-----------------TTATAAAGGTGA-T-AGAAG-GAA-A----A-CTC--ATA-TT
gi|6 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaTCTAGTTTCTGTAAGATTTTGAGATG----CCATCTTGTGAGATACT---T----------AA--Ataaa
gi|7 : tcacatgcacctgcagcacgattagcgttcgtagatctactcatccatatagaaccaatgatatctattcaaaatatgagttttccttctatcacctttataaccaatg--AATA----------------CGTGAATACATTAGT-ATCTCACATGTA--G--GT-------------------------T---------ACAGAA---AACGGAAACTGACG--A-CG--CCGAGTAACTTATTAAAACGA----GTGGAGAA-AAATTAGTTCGGATAATTGGGAA-AATGGAGGAATGCACATCACATTTACACAGACT-A-TGTGACTGC
gi|8 : GTTTCTACTTTCTACAAA---TTGAGATGA---CAA-CTTGTGAGATACTAATT----------AA--AGTT----------------AG----TA---TAG--ATCTCACA---AGTG--GT-------CAGATTGATATCA---CTTCAAAAACTGATACAA---AGTAGAAAGTG--G--A-T---g
gi|9 : aGTTTCTTTTTTCTGCAAACTTTTGAGATAA---CAA-CTGGTGATATACAAA-T----------A-----TA----------------CAGACATA---CA------TCA---------------------A----------A---CTT---------CTAGAA---AGTAGAATCTG--GCTATT---CAGAACAACTTg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATGTGACATAATACAAAATTTTAATCTACACGCAGTATATGCACAGGAACCTGAAAGTGGATTGTTTACATGTAAATGGATCTTATACACATA
Unaligned ( gi|11 ): CTATGTGACGCATACCATCCATTTAACCACAGTGTATGCAGCGGTACCTGAAAAGTGGAAAGCTGCCACGTACATAGCTCTTCAGCAC
Unaligned ( gi|12 ): ACCTGAAGTGTGGATAGCCTACAGATCTTCATGTACACTTCCCTTTCTCTCTCCAATGGAAAATTAATACAGAACCAAT
Unaligned ( gi|13 ): CAATGAAAAATACATGTAGATATAAAACCAATAATTTATCCAAATTATAATGATTGTTCCAACAG