lowQualScore : 11111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 666666666666 111 00000000000000 1 111 77777777 333333333333333333333333333333333333333333333333333333333333333 555555555555555555555555555555555555555 11 2222222222 1111 22222222222222 1 11 33333333333333 1111 1 11 1111 2222 22222 444444 111 22222 444444444 11 33 1111 222 111111 222 1111
lowQualScore : 9 0 333333333333 2 2 777 0 99 55555555555555 0 9 6 0 444 66666666 3 888 777 5 99999 5 777777777777777777777777777777777777777777777777777777777777777 222222222222222222222222222222222222222 33 3 9999999999 4 7 4 4 55 1 2222 4 4 11111111111111 666 0 4 8 2 55 5 44 00 66 11111111111111 88888 888 0 3333 3 7 00 4444 0000 00000 8 444444 777 4 22222 6 2 55 8 9 222222222 00 6 1 99 6 4444 6 222 8 444444 555 8 5555 0
lowQualScore : . . ............ . . ... . .. .............. . . . . ... ........ . ... ... . ..... . ............................................................... ....................................... .. . .......... . . . . .. . .... . . .............. ... . . . . .. . .. .. .. .............. ..... ... . .... . . .. .... .... ..... . ...... ... . ..... . . .. . . ......... .. . . .. . .... . ... . ...... ... . .... .
lowQualScore : 5 0 000000000000 5 0 555 8 88 33333333333333 7 0 0 0 555 00000000 7 888 222 0 66666 6 333333333333333333333333333333333333333333333333333333333333333 444444444444444444444444444444444444444 11 2 6666666666 4 1 4 0 55 5 5555 0 0 99999999999999 444 8 0 0 1 77 3 66 66 11 44444444444444 00000 000 1 5555 3 8 00 2222 8888 00000 0 000000 555 0 00000 5 8 88 0 6 444444444 77 7 0 00 7 2222 7 222 0 444444 888 2 2222 8
consensus : GGAAGACCTTACTGTT-ATT-TA--------ACTGTATGTTT---TTCTTCTATATC---GTC-TC----TGCGAAAGACCTTACTGTT-ATTCNACTGTA---GT-TGTTTTTC---TT-CTAT-ATTCTTC-TT--GATTTTCCTCG--CNA--TT-------------CTC----GATC--------T-------G---T--------CTTCAGGAAA-------GANG-------NCT----TCTGGT----AAA-GA-GANTTT--------ACAT-GCANA-TTT-TTG--AGCGAA--NCGT-CACT-TCC---------GGTCGGGAG---TTATTCCCCTTTT-AG-TGACTTTTTGGAGGTCCG-TCT--T--GTCCA-CG-----TAT---CTC--C--TCCGTAACTATC-A-AAGCT-AGAGACT-TCAA----CTTGGGACACAAGAC-G--G-ACTCATCNCTCGAGT---TGTNTTGNCG--GGCCTTCGATTTGACCGG-AAGCGATT-GC--TTTGCCN-AAA-GCTCGCCTGGACCTGAAAAAATG-GA----TGCCA-AAAAAT-TTC-GCC---A-TATTCTGTGATTTTG--GACATTCCATT
Reference ( gi|1 ) : GGAAGACATTACTGTT-ATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGTGTTTTTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGTACATGTATGTTTTTC---TT-CTAT-ATTTTTC-TT--GATTTTCCTCA--CTA--TT-------------CTT----AATT--------T-------G---T--------CTTCAGGGAA-------GAAG-------ACT----TCTGGT----AGT-GA-TAATTT--------ATAT-GCATA-TTT-TTG--AGCAAA--TTAT-CACT-TCC---------GATTGGGAG---TTATTTCCCTTTT-AG-TGACTTTTTGGAGGTACG-TCT--T--GTCCA-CG-----TAC---CTC--C--TCCGTAACTATC-A-AAGCT-AGAGACC-TCAA----CTTTGAACACAAGAC-G--G-ATTCATCCCTCGAGT---TGTTTTGTCG--GGCCTTTGGTTTGGTCGG-AGGCGATTCGC-TTTTGCCT-AAA-GCTCGCCTGGACCTGCTAAAATG-GA----TGCCA-AAAACT-TTC-GCC---A-TATTTT-TCATTTTG--GACATTCCATT
gi|7 : GGAAGACCTTATAGTG-ATT------------CT-TATGTTTCTTTTCCTCTTTATTAGGGTCTTC----TGCGAGAGACCTCACTGTT-ATTCCACTGTA------TGTCTTTC---TT-CTAT-ATTTTTC-TT--GATTTTCCTCG--CAA--TTTTCTCAGCCATATCTT----GATCGATTTTCAT-------GAAAT--------CTTCATGAAA-------GATG-------CCT----TCTGGG----AAG-GA-CAATTC--------ACAT-GCACA-TTA-TTG--AGCGAA--AAGT-CACT-TCC---------GATCGGGAG---TTATTTCCCTTTT-AG-T-----------GGTTCA-TCT--T--GTCCA-CG-----TAT---CTC--C--TCCGTACATGT-----AACTAAGATATT-TCAA----CTT
gi|8 : acGGAAGACTTTTCTGTT-ATTCTACTCATTCTACTGTATGTTT---TTCGTCTATACC-------------TCCGAAAGACCTTACTGTT-ATTCTATTG--CATGTCT-TTTTCCACATTGTTATCATTTTTCTTT--GATTTTCCCAG--CCAT-TT-------------CTT----AATC--------G-------A---T--------TTTCATGAAATTATCAGGAAA-------GCTGTTGTTTGGC----AAA-GA-GATTTT--------CAAC-ACATA-TTC-TTG--ACCAAA--ACAT-CACT-TCC---------GGTTGGG----------TTCCTTTT-AG-TGAGTTT
gi|13 : tGGAGAACCTTACTGTT-ATC-TA-----------GTGTGTTT---TTCTTCTATAT---TATTATTAAGGT
gi|3 : cttccgtcttctgcAAGACATTACTGTTTATT-TG--------ACTGTATGTCT---TTCTTGTATATcttcct
gi|13 : tTGCGGAGAACCTTACTGTT-AT----CTA-----GTGTGTTTTTC---TT-CTAT-ATTATTA-TTAAGGTCTTCCTttttcttgattttcctcactatcttaatttgtcttcagggaagagacttcggtagtgataatttatatgcatatttttgagcaaattattcactttcgattgggagttatttcccttttaggtgactttttggaggtacgtcttgtccacgtacctcctccgtaactatcaaagctagagacctcaactttacacaagacggaattcatcctcgggttgttttgtcgggctttggtttggtcggaggcgattcgcatcttgcctaaagctcgcctggacctgcgaaaatggatgccaaaaactttcgccattatttttcattttggaattccatttaa
gi|3 : cttccgtcttcAAGACATTACTGTTTATTTGACTGTA------TGTCTTTC---TT-GTAT-ATTTTTC-TT--GATTTTCCTCA--CTA--T--------------CTT----AATT--------T-------G---T--------CTTCAGGGAA-------GA-G-------ACT----TC-GGT----AGT-GA-TAATTT--------ATAT-GCATA-TTT-TTG--AGCAAA--TTATTCACT-TTC---------GATTGGGAG---TTATTTCCCTTTT-AGGTGACTTTTTGGAGGTACG-TCT--T--GTCCA-CG-----TAC---CTC--C--TCCGTAACTATC-A-AAGCT-AGAGACC-TCAA----CTTT--ACACAAGAC-G--GAATTCAT-CCTCGGGT---TGTTTTGTCG--GG-CTTTGGTTTGGTCGG-AGGCGATTCGCATCTTGCCT-AAA-GCTCGCCTGGACCTGCGAAAATG-GA----TGCCA-AAAACT-TTC-GCC---ATTATTTT-TCATTTTG--GA-ATTCCATT
gi|6 : tTATTTTTC---AT--TAT-AGTCCCC-TC--GATTTTC-TCA--GTAATTT-------------CTTCATCGATT--------TTCATGAAA---T--------CTTCAGGAAA-------GATG-------TCT----TTTTGT----AAA-GA-AAATTT--------AAAT-GCAAA-TTT-TTA--ATTGAA--ACAC-CACT-TCC---------G-----GAG---TTATTCCCCTTTT-AG-T-------------TCCG-TCT--T--GTCCA-AA-----GATAAACTC--C--T--G-AACTATG-A-AAGCT-AAAGACT-TAAA----CTTTGGACACAAGAA-A--G-TCTCAT---TATAGTAGATGTCTGAAAA--GGCATTTGATTTGACTGT-AAGCGA-------TTTGCCTAAAA-GCTCGCCTGGACCTGA-AAAATG-GA----TGCTA-AAAAA--TTC-GCT---A-AATTCTGTGATTTTG--GACATTTCATtaa
gi|5 : tttatTATTTTCC---TT-C-AT-ATCCCCC-GT---ATTTTCCTCA--CCG--TTTCTTGTATCC---CTC----GATT--------TCAT----G---TAAAACTTTTTTCAGGGAA---------AG-------AGTA---TTTGAT----GAA-GA-GACTTT--------GCA--GCAAACTTT-TTG--AGCGAA--T-A--CGTC-TCC---------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTATT--GTCCAACA-----CAT---TTC--C--TCC-TAAA-ATC-A-AAGAT-AGAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCATCT----AGT---AGCGATGCTGAAAGTATTTTATTTGACCGGTA------TAGC-ATTTGCTA-AAA-GTTCGCGCAGACCTAA-AAAAT--GA----TGCAATAAAAAT-GTC-CCC---A-AATTCCGTGATTT----GTCATTCctc
gi|9 : tattactTTTTC---CT-CCAT-CTTCCCC-GC--GATTTTC-TCAGCCGT--TT-------------CTC----GACC--------G-------A---T--------TTTCAGGAAA-------GATG-------TGT----TTTTAT----AAA-GA-GACTGT--------GCAT-GCAAA-TTT-TCG--AACGAA--ATGT-CGCT-TCC---------GGTCCGGAG---TTATTCCCCTTTT-AG-TGACTTTTTGGAGGTCTG-TAT--T--GTCCA-TG-----CA
gi|2 : gtcttattaTTTC---TT-CCG--ATTTTT------GATTTTCATGA-----------------------------AATT--------T---------------------TACAGGAAAA------GATGTATTTTAAAT----TCTGAC----AGAAGA-GACTTTTTGC----ATCTCGCAAA-TTTCTTGGCAGCGAA--TCGT-TACT-TTCCAGAAGAGGGA--GGGAGGGTTTATTGTCCTTT--AG-TGACTGTTTTGAGGTCCGTTCTG-T--GTCCA--A-----TAT---CGCATC--TCCAT-ACT-TT-ATAAGCT-AGA-ACT-TCTA----CTTGG--CACGAAGC-AGTG-ACTTATCATCCAAGT---T
gi|3 : ttgtgattttctcgccgAGGGAA-------ATA--------ACT----CCCAATCGAAAGT-GAATAATTTGCTCAAAAATAT-GCATA-T-----------AAA--TTAT-CACT-ACC---------GA-----AG---TCTCTTCCCTagaatgcttagaaaagagggtagtgttgatattgccagtaaagcgaatttagaccataatgcagtggacaatagaaaaatggaatgaaaaaatttctgacatcaaattcgtgttatttttggacatggtccat
gi|11 : taagacattactgtttatttgactgtatgtctttcttgtatatttttcttgattttcctcactatcttaatttgtcttcAT-GCAAA-TTT-TTG--AGCGAA--ATGT-CACT-CCC---------GGTCAGGAG---TTATTCCTCTTTT-AG-TGACTTTTTGGAGGTCTG-TCT--T--GTCCT-AG-----TATAAACTC--C--T---TAGCTAtttaggtgactttttggaggtacgtcttgtccacgtacctcctccgtaactatcaaagctagagacctcaactttacacaagacggaattcatcctcgggttgttttgtcgggctttggtttggtcggaggcgattcgcatcttgcctaaagctcgcctggacctgcgaaaatggatgccaaaaactttcgccattatttttcattttggaattccatttaa
gi|4 : tcttttggttaagTT-TTG--AGAGAACATTAC-C-CTGTCT---------GATT----------ATTTCTCTTTT-AGCTGACTGTT--GATGC-CC-TCT--TCAGTCCA-CGAAACATTC---CTC--TCATCCTTAACTATCTA-AAGCGAAGAAACTATCAA----CTTGAGACACAATATAG--G-ACTCGT
gi|15 : ttttcttcaattattattatgttccttatagtcccctcgaatctcatgccattctcgacgatctcattgaaatttttcagaaaatgtatttgagatagcagacttgcgcaatcaaaaGGAG---TTATTGCCCTTTA-AG-TGACTTTTTGGAGGTCCG-TCT--T--GTCCatagttaagctggaaagcgtattattcaccggaacattccaaaagcttcctggacctgaaacgtgagatctgccaaaaattcttcggccaaaatatccgttattttattgacatccatc
gi|12 : CCTTCGATTTGACCGA-AAGCAATT-------TGAGT-AAAAGCTCACCTGGACCTGAAAAAATG-G-----TGACG-AAAA
gi|10 : gacacaagatacacttatcacagtagatgacggaaaataCTTCGATTTGACCGG-AAGCGATTTGC------CCA-AAA-GCTTGCCTGGACCTGAAAAAATG-GA----TGCCA-AAAAAA-TTC-ACC---A-TTTTCTGTGATTTAG--GACATTTCCTTaa
gi|4 : acacaagatatacttattatagtagatgatgggaaaagaCCA-AAA-GCTT-CCTGGACCTG---AAACGTGAGATCTGCCA-AAAATTCTTCGGCCAAAA-TATCCG-TTATTTTATTGACA-TCCATgcaat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777 222 6666666666666666666 333333 111111111 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111 11111111111 1111111 22222222222 1111 11111 444444 222222222222222222 5555555 111 1111 333333333333 1 111111111
lowQualScore : 3 33333333333 6 333 4 6666666666666666666 6 1 0 888888 999999999 4 4 66 44 1 4 555555555555555555555555555555555555555555555555555555555555555555555555 4 999999999999999999999999999 4 4 4 2 22222222222 1 4 4 55 88 4 3333333 1 666 2 3 7 1 33 55 55 4 55 4 2 66666666666 66 2 4 8888 5 5 5 5 2222 888 33333 5 000000 888888888888888888 3 0 0 1 0000000 5 222 0 0000 333333333333 5 5 9999 5 777 1 555555555 5 4 4 5 1 77 77
lowQualScore : . ........... . ... . ................... . . . ...... ......... . . .. .. . . ........................................................................ . ........................... . . . . ........... . . . .. .. . ....... . ... . . . . .. .. .. . .. . . ........... .. . . .... . . . . .... ... ..... . ...... .................. . . . . ....... . ... . .... ............ . . .... . ... . ......... . . . . . .. ..
lowQualScore : 7 00000000000 7 333 0 0000000000000000000 7 0 1 999999 111111111 4 4 11 88 0 4 888888888888888888888888888888888888888888888888888888888888888888888888 4 666666666666666666666666666 0 0 1 4 88888888888 0 0 0 55 99 0 0000000 6 444 6 6 3 1 22 66 55 0 55 0 9 77777777777 99 5 5 9999 7 7 3 7 1111 888 11111 7 333333 111111111111111111 1 2 4 4 0000000 0 999 2 6666 000000000000 0 0 0000 0 777 4 111111111 7 3 3 7 7 99 99
consensus : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTCT-----GCGGAAGACCTTACTGTT-ATTCNACTGTA----T-TGTTTTTCTTC-------TAT-ATTCCCC-TC--GATTTTCCTCGCCA-TT----------C-----TC-------------GA-----T-----------C--------T-------G----TCTT-CAGGAAA-------GATGTCT----T-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA-ACGT-CACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCNCTCG-AGTTGNNNTGNCG--GG-----CCTTCGATTTGACCGGAAGCGATT-GC--T-TTGC-C--AAAAGCTCGCCTGGACC----TG-----------AAAAA-ATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
Reference ( family-6096 ) : GGAAGACCTTACTGTTATT-TA--------ACTGTATGTTT---TTCTTCTATAT---C---GTCT-CT-----GCGAAAGACCTTACTGTT-ATTCNACTGTA---GT-TGTTTTTCTTC-------TAT-ATTCTTC-TT--GATTTTCCTCGCNA-TT----------C-----TC-------------GA-----T-----------C--------T-------G----TCTT-CAGGAAA-------GANGNCT----T-------CTGGTA-AAG-AGANTT-T--ACAT---GCANA-TTT-TTG--AGCGAA-NCGT-CACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCNCTCG-AGTTGTNTTGNCG--GG-----CCTTCGATTTGACCGGAAGCGATT-GC--T-TTGC-C--NAAAGCTCGCCTGGACC----TG-----------AAAAA-ATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTGA-TTTTG--GACAT--TCCATT
gi|1 : GGAAGACATTACTGTTATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGT---GTTT-TTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGTACATGTATGTTTTTCTTC-------TAT-ATTTTTC-TT--GATTTTCCTCACTA-TT----------C-----TT-------------AA-----T-----------T--------T-------G----TCTT-CAGGGAA-------GAAGACT----T-------CTGGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA-TTAT-CACTTCC-------GATTGGGAG---TTATTTCCCT-TTTAG-TGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTTTGAACACAAGAC-G--G-ATTCATCCCTCG-AGTTGTTTTGTCG--GG-----CCTTTGGTTTGGTCGGAGGCGATTCGCT-T-TTGC-C--TAAAGCTCGCCTGGACC----TG-----------CTAAA-ATG-G-A--TGCCA-AAAACT-TTC-GCC---A-T---ATTT-T-TCA-TTTTG--GACAT--TCCATT
gi|10 : CTTCGATTTGACCGGAAGCGATTTGC-------C-C--AAAAGCTTGCCTGGACC----TG-----------AAAAA-ATG-G-A--TGCCA-AAAAAA-TTC-ACC---A-T---TTTC-TGTGA-TTTAG--GACAT--TTCCTT
gi|11 : acacaagatatacttattatagtagatgatgggaaaagaCT----T-------TTGGTT-AAG-A------------T---GCAAA-TTT-TTG--AGCGAA-ATGT-CACTCCC-------GGTCAGGAG---TTATTCCTCT-TTTAG-TGACTTTTTGGAGGTCTG-TC--T-T--GTCC-TAGTA-------TAAACTC--CT---TAGCTAgcaat
gi|12 : tGACACAAGAT-A--C-ACTTATCAC----AGTAGA--TGACG--GAAAATACCTTCGATTTGACCGAAAGCAATT--------TGAGT--AAAAGCTCACCTGGACC----TG-----------AAAAA-ATG-G----TGACG-AAAAA
gi|13 : ---C---GTCTTCT-----GCGGAGAACCTTACTGTT-A-TCTAGTG--------TGTTTTTCTTC-------TAT-ATTATTA-TTAAGGTCTTCCTa
gi|15 : cttcGGAG---TTATTGCCCT-TTAAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-
gi|2 : TTTCTTC-CGA-TT----------T-----TT-------------GA-----T-----------T--------TTCATGAAA----TTTTACAGGAAAA------GATGTAT----TTTAAATTCTGACAGAAG-AGACTT-TTTGCATCTCGCAAA-TTTCTTGGCAGCGAA-TCGT-TACTTTCCAGAAGAGGGAGGGAGGGTTTATTGTCCT-TT-AG-TGACTGTTTTGAGGTCCGTTC--TGT--GTCC-A-ATA-------T---CGCATCTCCAT-ACT-TT-ATAAGCT-A-GA-ACT-TCT----ACTTGG--CACGAAGC-AGTG-ACTTATCATCCA-AGTTAGAATG-------------CTTAGAAAAGA-GGGTAGTG-TT-GA--TATTGC-CAGTAAAGCGAATTTAGACCATAATGCAGTGGACAATAGAAAAATG-GAA--TG--A-AAAAAT-TTCTGAC---A-TCAAATTCGTGTTATTTTTG--GACATGGTCCAT
gi|3 : ttgtgattttctcgccgAAGACATTACTGTTTATTTGACTGTA------TGTCTTTCTTG-------TAT-ATTTTTC-TT--GATTTTCCTCACTA-T-----------C-----TT-------------AA-----T-----------T--------T-------G----TCTT-CAGGGAA-------GA-GACT----T-------C-GGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA-TTATTCACTTTC-------GATTGGGAG---TTATTTCCCT-TTTAGGTGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTT--TACACAAGAC-G--GAATTCATC-CTCG-GGTTGTTTTGTCG--GG------CTTTGGTTTGGTCGGAGGCGATTCGCATC-TTGC-C--TAAAGCTCGCCTGGACC----TG-----------CGAAA-ATG-G-A--TGCCA-AAAACT-TTC-GCC---ATT---ATTT-T-TCA-TTTTG--GA-AT--TCCATT
gi|4 : tTT-CTTCAATTATT---AT-TATGTTCCTT---------AT-AGTCCCC-TC--GAATCTCAT-GCCA-TT----------C-----TC-------------GACGATCT-----------CAT------T-------GAAATTTTT-CAGAAAA---------TGTAT----T--------TGAGA-TAGCAGACTTGC--GCAA---TCAAA-ATT-TTG--AGAGAA--CAT-TAC--CC-------TGTCTGA-----TTATTTCTCT-TTTAGCTGACTGTT--GATGCCC--TC--T-TCAGTCC-ACGAAACATTCCT---CTC--ATCCTTAACTATCTA-AAGCG-AAGAAACTATCA----ACTTGAGACACAATATAG--G-ACTCGTAT-----AGTTAAGCTGGAA--AG-----CGTATTATTC-ACCGGAA-C-ATT----------C-C--AAAAGCTT-CCTGGACC----TG------------AAAC-GTGAG-ATCTGCCA-AAAATTCTTCGGCCAAAA-T---A-TC-CGTTA-TTTTATTGACA---TCCATtaa
gi|5 : ttTA---CT-TATTTTCCTTC--------AT-ATCCCCC-GT---ATTTTCCTCACCG-TTTCTTGTATCCC-----TC-------------GA-----TTTCATGTAAAAC--------T-------T----TTTT-CAGGGAA-------AGAGTAT----T--------TGATG-AAG-AGACTT-T--GCA----GCAAACTTT-TTG--AGCGAATACGT-C---TCC-------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTAT-T--GTCCAACACA-------T---TTC--CTCC-TAAA-ATC-A-AAGAT-A-GAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCATCT-----AGTAGCGATGCTGAAAG-----TATTTTATTTGACCGG----TATA-GCA-T-TTGC-T--AAAAGTTCGCGCAGACC----T------------AAAAA-AT--G-A--TGCAATAAAAAT-GTC-CCC---A-A---ATTC-CGTGA-TTT----GTCAT--TCc
gi|6 : tatT-TATTTTTCAT--------TAT-AGTCCCC-TC--GATTTTCTCAGTAA-TT----------TCTTCATC-------------GA-----T-----------T--------TTCATGAAA----TCTT-CAGGAAA-------GATGTCT----T-------TTTGTA-AAG-AAAATT-T--AAAT---GCAAA-TTT-TTA--ATTGAA-ACAC-CACTTCC-------GG-----AG---TTATTCCCCT-TTTAG-T-------------TCCG-TC--T-T--GTCC-AAAGA-------TAAACTC--CT--G-AACTATG-A-AAGCT-A-AAGACT-TAA----ACTTTGGACACAAGAA-A--G-TCTCATTA-TAGTAGATGTCTGAAAA--GG-----CATTTGATTTGACTGTAAGCGA-------T-TTGC-CT-AAAAGCTCGCCTGGACC----TG------------AAAA-ATG-G-A--TGCTA-AAAAA--TTC-GCT---A-A---ATTC-TGTGA-TTTTG--GACAT--TTCAT
gi|7 : tttaGGAAGACCTTATAGTGATT------------CT-TATGTTTCTTTTCCTCTTTAT---TAGGGTCTTCT-----GCGAGAGACCTCACTGTT-ATTCCACTGTA------TGTCTTTCTTC-------TAT-ATTTTTC-TT--GATTTTCCTCGCAA-TT----------T-----TCTCAGCCATATCTTGA-----T-----------CGATTTTCAT-------GAAA-TCTT-CATGAAA-------GATGCCT----T-------CTGGGA-AGG-ACAATT-C--ACAT---GCACA-TTA-TTG--AGCGAA-AAGT-CACTTCC-------GATCGGGAG---TTATTTCCCT-TTTAG-T-----------GGTTCA-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTACATGT-----AACTAA-GATATT-TCA----ACTTctc
gi|8 : acGGAAGACTTTTCTGTTATTCTACTCATTCTACTGTATGTTT---TTCGTCTATAC---C------T-C-------CGAAAGACCTTACTGTT-ATTCTATTGCA------TGTCTTTTTCCACATTGTTATCATTTTTCTTT--GATTTTCCCAGCCATTT----------C-----TT-------------AA-----T-----------C--------G-------A----TTTT-CATGAAATTATCAGGAAAGCTGTTGT-------TTGGCA-AAG-AGATTT-TCAACA-----CATA-TTC-TTG--ACCAAA-ACAT-CACTTCC-------GGTTGG--G---TT-----CCT-TTTAG-TGAGTTT
gi|9 : tTTTTCCTC-------CAT-CTTCCCC-GC--GATTTTCTCAGCCG-TTT---------C-----TC-------------GA-----C-----------C--------G-------A----TTTT-CAGGAAA-------GATGTGT----T-------TTTATA-AAG-AGACTG-T--GCAT---GCAAA-TTT-TCG--AACGAA-ATGT-CGCTTCC-------GGTCCGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCTG-TA--T-T--GTCC-ATGCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777 222 333333333333333333 111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 11111 1111111 22222222222 1111 1111111 7777777777777777777777777777777777777777777 5555555555 1 1 111111111
lowQualScore : 1 22222222222 6 333 1 999999999999999999 6 1 5 777777 9999 444 4 4 0 4 44 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 4 4 4 1 99999999 4 4 4 2 88888888888 1 4 4 55 00000 3333333 1 666 2 3 7 1 33 55 55 4 55 4 2 66666666666 66 2 4 8888 5 5 5 5 2222 888 4444444 4444444444444444444444444444444444444444444 2 5 0 66 1 0 2222222222 5 5 5 5 1 5 9999 5 777 1 555555555 5 4 1 5 1 77 77
lowQualScore : . ........... . ... . .................. . . . ...... .... ... . . . . .. ........................................................................................... . . . . . ........ . . . . ........... . . . .. ..... ....... . ... . . . . .. .. .. . .. . . ........... .. . . .... . . . . .... ... ....... ........................................... . . . .. . . .......... . . . . . . .... . ... . ......... . . . . . .. ..
lowQualScore : 0 77777777777 7 333 0 222222222222222222 7 0 0 444444 4444 777 0 0 8 4 88 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 4 8 6 44444444 0 0 1 4 44444444444 2 0 0 55 99999 0000000 6 444 6 6 3 1 22 66 55 0 55 0 9 77777777777 99 5 5 9999 7 7 3 7 1111 888 2222222 9999999999999999999999999999999999999999999 0 0 9 99 4 4 8888888888 0 0 0 0 1 0 0000 0 777 4 111111111 7 3 0 7 7 99 99
consensus : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCAC-C-AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
Reference ( family-6096 ) : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCNCTCGAGTTGNNNTGNC---------G--GG-----C-----CTTCGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
gi|1 : GGAAGACATTACTGTTATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGT---GTTTTTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGT-ACATGTATGTTTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T-T----------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GAAGACTT-------CTGGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA--TTATCACTTCC-------GATTGGGAG---TTATTTCCCT-TTTAG-TGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTTTGAACACAAGAC-G--G-ATTCATCCCTCGAGTTGTTTTGTC---------G--GG-----C-----CTTTGGT-TTGGTCGG--AGGCGATTCGCT-TTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCTAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---A-T---ATTT-T-TCA-TTTTG--GACAT--TCCATT
gi|10 : ACACAAGAT-A--T-ACTTATTAT---AGT--AGATGAT---------G--GG-----AAAAGACTTCGAT-TTGACCGG--AAGCGATTTGC-------C-C-AAAAGCTTGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAA-TTC-ACC---A-T---TTTC-TGTGA-TTTAG--GACAT--TTCCTT
gi|11 : TCTT-------TTGGTT-AAG-A------------T---GCAAA-TTT-TTG--AGCGAA--ATGTCACTCCC-------GGTCAGGAG---TTATTCCTCT-TTTAG-TGACTTTTTGGAGGTCTG-TC--T-T--GTCC-TAGTA-------TAAACTC--CT---TAGCTAgcaat
gi|12 : GACACAAGAT-A--C-ACTTATCAC---AGT--AGATGAC---------G--GAAAATAC-----CTTCGAT-TTGACCGA--AAGCAATT-------TG-AGT-AAAAGCTCAC-CTGGAC-CTGAAAAAATG-G----TGACG-AAAAA
gi|13 : ---C---GTCTTC----TGCGGAGAACCTTACTGTT-A-TCTAGTG---------TGTTTTTC----TT-CTAT-A-TTa
gi|15 : cttcGGAG---TTATTGCCCT-TTAAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-attattaaggtcttcct
gi|2 : AT-T-TTCTCGCCG---TTTCTTC-C------------GA-T-T----------T-----TTGA-----T-----------T--------TTCATGAAA----TTT-----------TACAGG-AAAAGATGTATTTTAAATTCTGACAGAAG-AGACTT-TTTGCATCTCGCAAA-TTTCTTGGCAGCGAA--TCGTTACTTTCCAGAAGAGGGAGGGAGGGTTTATTGTCCT-TT-AG-TGACTGTTTTGAGGTCCGTTC--TGT--GTCC-A-ATA-------T---CGCATCTCCAT-ACT-TT-ATAAGCT-A-GA-ACT-TCT----ACTTGG--CACGAAGC-AGTG-ACTTATCATCCAAGTTAGAATGCTTAGAAAAGAG--GG-----TAG---TGTTGATATTG-CCAGTAAAGCGAAT-----TTAGAC-C-ATAA---TGCAGTGGACAATAGAAAAATG-GAA--TG--A-AAAAAT-TTCTGAC---A-TCAAATTCGTGTTATTTTTG--GACATGGTCCAT
gi|3 : ttgtgAAGACATTACTGTTTATTTGACTGT-AT------GTCTTTC----TT-GTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T------------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GA-GACTT-------C-GGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAATTAT-TCACTTTC-------GATTGGGAG---TTATTTCCCT-TTTAGGTGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTT--TACACAAGAC-G--GAATTCATC-CTCGGGTTGTTTTGTC---------G--GG-----------CTTTGGT-TTGGTCGG--AGGCGATTCGCATCTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCGAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---ATT---ATTT-T-TCA-TTTTG--GA-AT--TCCATT
gi|4 : tTT-CTTCAATTATTAT-----TATGTTCC----TT---AT-A-GTCCCCTCG-AATCTCAT-GC------------CA-T-T----------C-----TCGACGATCT-----------CAT------T-------GAAATTTT-----------T-CAGA-AAA---TGTATT--------TGAGA-TAGCAGACTTGC--GCAA---TCAAA-ATT-TTG--AGAGAA---CATTAC--CC-------TGTCTGA-----TTATTTCTCT-TTTAGCTGACTGTT--GATGCCC--TC--T-TCAGTCC-ACGAAACATTCCT---CTC--ATCCTTAACTATCTA-AAGCG-AAGAAACTATCA----ACTTGAGACACAATATAG--G-ACTCGTAT----AGTTAAGCTGGA---------A--AG-----C-----GTATTAT-TC-ACCGG--AA-C-ATT----------C-C-AAAAGCTT-C-CTGGAC-CTG-AAACGTGAG-ATCTGCCA-AAAATTCTTCGGCCAAAA-T---A-TC-CGTTA-TTTTATTGACA---TCCATtaa
gi|5 : ttT-----TATTTTCC----TT-C-AT-A-TCCCCC--GTATTTTCCTCAC------------CG-T-TTCTTGTATCCC-----TCGA-----TTTCATGTAAAAC--------T-------T----TTT-----------T-CAGGGAAA-GA-GTATT--------TGATG-AAG-AGACTT-T--GCA----GCAAACTTT-TTG--AGCGAAT-ACGTC---TCC-------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTAT-T--GTCCAACACA-------T---TTC--CTCC-TAAA-ATC-A-AAGAT-A-GAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCATCT----AGTAGCGATGCT---------GAAAG-----T-----ATTTTAT-TTGACCGG------TATA-GCA-TTTG-C-T-AAAAGTTCGC-GCAGAC-CT-AAAAAAT--G-A--TGCAATAAAAAT-GTC-CCC---A-A---ATTC-CGTGA-TTT----GTCAT--TCc
gi|6 : tattacT-AT-----TATTTTTC----AT--TAT-A-GTCCCCTCG-ATTTTCTCAGT------------AA-T-T----------TCTTCATCGA-----T-----------T--------TTCATGAAA----TCT-----------T-CAGG-AAA-GATGTCTT-------TTTGTA-AAG-AAAATT-T--AAAT---GCAAA-TTT-TTA--ATTGAA--ACACCACTTCC-------GG-----AG---TTATTCCCCT-TTTAG-T-------------TCCG-TC--T-T--GTCC-AAAGA-------TAAACTC--CT--G-AACTATG-A-AAGCT-A-AAGACT-TAA----ACTTTGGACACAAGAA-A--G-TCTCATTAT---AGT--AGATGTCTGAAA----A--GG-----C-----ATTTGAT-TTGACTGT--AAGCGA-------TTTG-C-CTAAAAGCTCGC-CTGGAC-CTG-AAAAATG-G-A--TGCTA-AAAAA--TTC-GCT---A-A---ATTC-TGTGA-TTTTG--GACAT--TTCAT
gi|7 : ttGGAAGACCTTATAGTGATT------------CT-TATGTTTCTTTTCCTCTTTAT---TAGGGTCTTC----TGCGAGAGACCTCACTGTT-ATTCCACTGT-AT------GTCTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCGCAATTTTCTCAGCCA-TAT----------C-----TTGA-----T-----------CGATTTTCAT-------GAAA-TCT-----------T-CATG-AAA-GATGCCTT-------CTGGGA-AGG-ACAATT-C--ACAT---GCACA-TTA-TTG--AGCGAA--AAGTCACTTCC-------GATCGGGAG---TTATTTCCCT-TTTAG-T-----------GGTTCA-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTACATGT-----AACTAA-GATATT-TCA----ACTTctc
gi|8 : acGGAAGACTTTTCTGTTATTCTACTCATTCTACTGTATGTTT---TTCGTCTATAC---C-------TC------CGAAAGACCTTACTGTT-ATTCTATTGC-ATG----TCTTTTTCCACATTGTTATCATTTTTCTTTG-ATTTTCCCAGC------------CATT-T----------C-----TTAA-----T-----------C--------G-------A----TTTTCATGAAATTAT-CAGG-AAA-GCTGTTGT-------TTGGCA-AAG-AGATTT-T--CAAC---ACATA-TTC-TTG--ACCAAA--ACATCACTTCC-------GGTTGG--G---TT-----CCT-TTTAG-TGAGTTT
gi|9 : tT-AT-----TATTTTCC----TC-C-AT-C-TTCCCCGCG-ATTTTCTCAGC------------CG-T-TT---------C-----TCGA-----C-----------C--------G-------A----TTT-----------T-CAGG-AAA-GATGTGTT-------TTTATA-AAG-AGACTG-T--GCAT---GCAAA-TTT-TCG--AACGAA--ATGTCGCTTCC-------GGTCCGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCTG-TA--T-T--GTCC-ATGCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777 222 333333333333333333 111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 11111 1111111 22222222222 1111 1111111 777777777777777777777777777777777777777777777 5555555555 1 1 111111111
lowQualScore : 1 22222222222 6 333 1 999999999999999999 6 1 5 777777 9999 444 4 4 0 4 44 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 4 4 4 1 99999999 4 4 4 2 88888888888 1 4 4 55 00000 3333333 1 666 2 3 7 1 33 55 55 4 55 4 2 66666666666 66 2 4 8888 5 5 5 5 2222 888 4444444 444444444444444444444444444444444444444444444 5 0 66 1 0 2222222222 5 5 5 5 1 5 9999 5 777 1 555555555 5 4 1 5 1 77 77
lowQualScore : . ........... . ... . .................. . . . ...... .... ... . . . . .. ........................................................................................... . . . . . ........ . . . . ........... . . . .. ..... ....... . ... . . . . .. .. .. . .. . . ........... .. . . .... . . . . .... ... ....... ............................................. . . .. . . .......... . . . . . . .... . ... . ......... . . . . . .. ..
lowQualScore : 0 77777777777 7 333 0 222222222222222222 7 0 0 444444 4444 777 0 0 8 4 88 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 4 8 6 44444444 0 0 1 4 44444444444 2 0 0 55 99999 0000000 6 444 6 6 3 1 22 66 55 0 55 0 9 77777777777 99 5 5 9999 7 7 3 7 1111 888 2222222 000000000000000000000000000000000000000000000 0 9 99 4 4 8888888888 0 0 0 0 1 0 0000 0 777 4 111111111 7 3 0 7 7 99 99
consensus : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
Reference ( family-6096 ) : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
gi|1 : GGAAGACATTACTGTTATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGT---GTTTTTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGT-ACATGTATGTTTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T-T----------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GAAGACTT-------CTGGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA--TTATCACTTCC-------GATTGGGAG---TTATTTCCCT-TTTAG-TGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTTTGAACACAAGAC-G--G-ATTCATC-CCTCGAGTTGTTTTGTC---------G--GG-----C-----CTTTGGT-TTGGTCGG--AGGCGATTCGCT-TTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCTAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---A-T---ATTT-T-TCA-TTTTG--GACAT--TCCATT
gi|10 : ACACAAGAT-A--T-ACTTATTAT----AGT--AGATGAT---------G--GG-----AAAAGACTTCGAT-TTGACCGG--AAGCGATTTGC-------C-C-AAAAGCTTGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAA-TTC-ACC---A-T---TTTC-TGTGA-TTTAG--GACAT--TTCCTT
gi|11 : TCTT-------TTGGTT-AAG-A------------T---GCAAA-TTT-TTG--AGCGAA--ATGTCACTCCC-------GGTCAGGAG---TTATTCCTCT-TTTAG-TGACTTTTTGGAGGTCTG-TC--T-T--GTCC-TAGTA-------TAAACTC--CT---TAGCTAgcaat
gi|12 : GACACAAGAT-A--C-ACTTATCAC----AGT--AGATGAC---------G--GAAAATAC-----CTTCGAT-TTGACCGA--AAGCAATT-------TG-AGT-AAAAGCTCAC-CTGGAC-CTGAAAAAATG-G----TGACG-AAAAA
gi|13 : ---C---GTCTTC----TGCGGAGAACCTTACTGTT-A-TCTAGTG---------TGTTTTTC----TT-CTAT-A-TTa
gi|15 : cttcGGAG---TTATTGCCCT-TTAAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-attattaaggtcttcct
gi|2 : AT-T-TTCTCGCCG---TTTCTTC-C------------GA-T-T----------T-----TTGA-----T-----------T--------TTCATGAAA----TTT-----------TACAGG-AAAAGATGTATTTTAAATTCTGACAGAAG-AGACTT-TTTGCATCTCGCAAA-TTTCTTGGCAGCGAA--TCGTTACTTTCCAGAAGAGGGAGGGAGGGTTTATTGTCCT-TT-AG-TGACTGTTTTGAGGTCCGTTC--TGT--GTCC-A-ATA-------T---CGCATCTCCAT-ACT-TT-ATAAGCT-A-GA-ACT-TCT----ACTTGG--CACGAAGC-AGTG-ACTTATCATCCA-AGTTAGAATGCTTAGAAAAGAG--GG-----TAG---TGTTGATATTG-CCAGTAAAGCGAAT-----TTAGAC-C-ATAA---TGCAGTGGACAATAGAAAAATG-GAA--TG--A-AAAAAT-TTCTGAC---A-TCAAATTCGTGTTATTTTTG--GACATGGTCCAT
gi|3 : ttgtgAAGACATTACTGTTTATTTGACTGT-AT------GTCTTTC----TT-GTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T------------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GA-GACTT-------C-GGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAATTAT-TCACTTTC-------GATTGGGAG---TTATTTCCCT-TTTAGGTGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTT--TACACAAGAC-G--GAATTCATCCTCG--GGTTGTTTTGTC---------G--GG-----------CTTTGGT-TTGGTCGG--AGGCGATTCGCATCTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCGAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---ATT---ATTT-T-TCA-TTTTG--GA-AT--TCCATT
gi|4 : tTT-CTTCAATTATTAT-----TATGTTCC----TT---AT-A-GTCCCCTCG-AATCTCAT-GC------------CA-T-T----------C-----TCGACGATCT-----------CAT------T-------GAAATTTT-----------T-CAGA-AAA---TGTATT--------TGAGA-TAGCAGACTTGC--GCAA---TCAAA-ATT-TTG--AGAGAA---CATTAC--CC-------TGTCTGA-----TTATTTCTCT-TTTAGCTGACTGTT--GATGCCC--TC--T-TCAGTCC-ACGAAACATTCCT---CTC--ATCCTTAACTATCTA-AAGCG-AAGAAACTATCA----ACTTGAGACACAATATAG--G-ACTCGT-A-T---AGTTAAGCTGGA---------A--AG-----C-----GTATTAT-TC-ACCGG--AA-C-ATT----------C-C-AAAAGCTT-C-CTGGAC-CTG-AAACGTGAG-ATCTGCCA-AAAATTCTTCGGCCAAAA-T---A-TC-CGTTA-TTTTATTGACA---TCCATtaa
gi|5 : ttT-----TATTTTCC----TT-C-AT-A-TCCCCC--GTATTTTCCTCAC------------CG-T-TTCTTGTATCCC-----TCGA-----TTTCATGTAAAAC--------T-------T----TTT-----------T-CAGGGAAA-GA-GTATT--------TGATG-AAG-AGACTT-T--GCA----GCAAACTTT-TTG--AGCGAAT-ACGTC---TCC-------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTAT-T--GTCCAACACA-------T---TTC--CTCC-TAAA-ATC-A-AAGAT-A-GAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCAT--CT---AGTAGCGATGCT---------GAAAG-----T-----ATTTTAT-TTGACCGG------TATA-GCA-TTTG-C-T-AAAAGTTCGC-GCAGAC-CT-AAAAAAT--G-A--TGCAATAAAAAT-GTC-CCC---A-A---ATTC-CGTGA-TTT----GTCAT--TCc
gi|6 : tattacT-AT-----TATTTTTC----AT--TAT-A-GTCCCCTCG-ATTTTCTCAGT------------AA-T-T----------TCTTCATCGA-----T-----------T--------TTCATGAAA----TCT-----------T-CAGG-AAA-GATGTCTT-------TTTGTA-AAG-AAAATT-T--AAAT---GCAAA-TTT-TTA--ATTGAA--ACACCACTTCC-------GG-----AG---TTATTCCCCT-TTTAG-T-------------TCCG-TC--T-T--GTCC-AAAGA-------TAAACTC--CT--G-AACTATG-A-AAGCT-A-AAGACT-TAA----ACTTTGGACACAAGAA-A--G-TCTCATTA-T---AGT--AGATGTCTGAAA----A--GG-----C-----ATTTGAT-TTGACTGT--AAGCGA-------TTTG-C-CTAAAAGCTCGC-CTGGAC-CTG-AAAAATG-G-A--TGCTA-AAAAA--TTC-GCT---A-A---ATTC-TGTGA-TTTTG--GACAT--TTCAT
gi|7 : ttGGAAGACCTTATAGTGATT------------CT-TATGTTTCTTTTCCTCTTTAT---TAGGGTCTTC----TGCGAGAGACCTCACTGTT-ATTCCACTGT-AT------GTCTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCGCAATTTTCTCAGCCA-TAT----------C-----TTGA-----T-----------CGATTTTCAT-------GAAA-TCT-----------T-CATG-AAA-GATGCCTT-------CTGGGA-AGG-ACAATT-C--ACAT---GCACA-TTA-TTG--AGCGAA--AAGTCACTTCC-------GATCGGGAG---TTATTTCCCT-TTTAG-T-----------GGTTCA-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTACATGT-----AACTAA-GATATT-TCA----ACTTctc
gi|8 : acGGAAGACTTTTCTGTTATTCTACTCATTCTACTGTATGTTT---TTCGTCTATAC---C-------TC------CGAAAGACCTTACTGTT-ATTCTATTGC-ATG----TCTTTTTCCACATTGTTATCATTTTTCTTTG-ATTTTCCCAGC------------CATT-T----------C-----TTAA-----T-----------C--------G-------A----TTTTCATGAAATTAT-CAGG-AAA-GCTGTTGT-------TTGGCA-AAG-AGATTT-T--CAAC---ACATA-TTC-TTG--ACCAAA--ACATCACTTCC-------GGTTGG--G---TT-----CCT-TTTAG-TGAGTTT
gi|9 : tT-AT-----TATTTTCC----TC-C-AT-C-TTCCCCGCG-ATTTTCTCAGC------------CG-T-TT---------C-----TCGA-----C-----------C--------G-------A----TTT-----------T-CAGG-AAA-GATGTGTT-------TTTATA-AAG-AGACTG-T--GCAT---GCAAA-TTT-TCG--AACGAA--ATGTCGCTTCC-------GGTCCGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCTG-TA--T-T--GTCC-ATGCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777 222 333333333333333333 111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 11111 1111111 22222222222 1111 1111111 777777777777777777777777777777777777777777777 5555555555 1 1 111111111
lowQualScore : 1 22222222222 6 333 1 999999999999999999 6 1 5 777777 9999 444 4 4 0 4 44 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 4 4 4 1 99999999 4 4 4 2 88888888888 1 4 4 55 00000 3333333 1 666 2 3 7 1 33 55 55 4 55 4 2 66666666666 66 2 4 8888 5 5 5 5 2222 888 4444444 444444444444444444444444444444444444444444444 5 0 66 1 0 2222222222 5 5 5 5 1 5 9999 5 777 1 555555555 5 4 1 5 1 77 77
lowQualScore : . ........... . ... . .................. . . . ...... .... ... . . . . .. ........................................................................................... . . . . . ........ . . . . ........... . . . .. ..... ....... . ... . . . . .. .. .. . .. . . ........... .. . . .... . . . . .... ... ....... ............................................. . . .. . . .......... . . . . . . .... . ... . ......... . . . . . .. ..
lowQualScore : 0 77777777777 7 333 0 222222222222222222 7 0 0 444444 4444 777 0 0 8 4 88 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 4 8 6 44444444 0 0 1 4 44444444444 2 0 0 55 99999 0000000 6 444 6 6 3 1 22 66 55 0 55 0 9 77777777777 99 5 5 9999 7 7 3 7 1111 888 2222222 000000000000000000000000000000000000000000000 0 9 99 4 4 8888888888 0 0 0 0 1 0 0000 0 777 4 111111111 7 3 0 7 7 99 99
consensus : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
Reference ( family-6096 ) : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
gi|1 : GGAAGACATTACTGTTATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGT---GTTTTTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGT-ACATGTATGTTTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T-T----------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GAAGACTT-------CTGGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA--TTATCACTTCC-------GATTGGGAG---TTATTTCCCT-TTTAG-TGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTTTGAACACAAGAC-G--G-ATTCATC-CCTCGAGTTGTTTTGTC---------G--GG-----C-----CTTTGGT-TTGGTCGG--AGGCGATTCGCT-TTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCTAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---A-T---ATTT-T-TCA-TTTTG--GACAT--TCCATT
gi|10 : ACACAAGAT-A--T-ACTTATTAT----AGT--AGATGAT---------G--GG-----AAAAGACTTCGAT-TTGACCGG--AAGCGATTTGC-------C-C-AAAAGCTTGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAA-TTC-ACC---A-T---TTTC-TGTGA-TTTAG--GACAT--TTCCTT
gi|11 : TCTT-------TTGGTT-AAG-A------------T---GCAAA-TTT-TTG--AGCGAA--ATGTCACTCCC-------GGTCAGGAG---TTATTCCTCT-TTTAG-TGACTTTTTGGAGGTCTG-TC--T-T--GTCC-TAGTA-------TAAACTC--CT---TAGCTAgcaat
gi|12 : GACACAAGAT-A--C-ACTTATCAC----AGT--AGATGAC---------G--GAAAATAC-----CTTCGAT-TTGACCGA--AAGCAATT-------TG-AGT-AAAAGCTCAC-CTGGAC-CTGAAAAAATG-G----TGACG-AAAAA
gi|13 : ---C---GTCTTC----TGCGGAGAACCTTACTGTT-A-TCTAGTG---------TGTTTTTC----TT-CTAT-A-TTa
gi|15 : cttcGGAG---TTATTGCCCT-TTAAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-attattaaggtcttcct
gi|2 : AT-T-TTCTCGCCG---TTTCTTC-C------------GA-T-T----------T-----TTGA-----T-----------T--------TTCATGAAA----TTT-----------TACAGG-AAAAGATGTATTTTAAATTCTGACAGAAG-AGACTT-TTTGCATCTCGCAAA-TTTCTTGGCAGCGAA--TCGTTACTTTCCAGAAGAGGGAGGGAGGGTTTATTGTCCT-TT-AG-TGACTGTTTTGAGGTCCGTTC--TGT--GTCC-A-ATA-------T---CGCATCTCCAT-ACT-TT-ATAAGCT-A-GA-ACT-TCT----ACTTGG--CACGAAGC-AGTG-ACTTATCATCCA-AGTTAGAATGCTTAGAAAAGAG--GG-----TAG---TGTTGATATTG-CCAGTAAAGCGAAT-----TTAGAC-C-ATAA---TGCAGTGGACAATAGAAAAATG-GAA--TG--A-AAAAAT-TTCTGAC---A-TCAAATTCGTGTTATTTTTG--GACATGGTCCAT
gi|3 : ttgtgAAGACATTACTGTTTATTTGACTGT-AT------GTCTTTC----TT-GTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T------------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GA-GACTT-------C-GGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAATTAT-TCACTTTC-------GATTGGGAG---TTATTTCCCT-TTTAGGTGACTTTTTGGAGGTACG-TC--T-T--GTCC-ACGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCA----ACTT--TACACAAGAC-G--GAATTCATCCTCG--GGTTGTTTTGTC---------G--GG-----------CTTTGGT-TTGGTCGG--AGGCGATTCGCATCTTG-C-C-TAAAGCTCGC-CTGGAC-CTGCGAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---ATT---ATTT-T-TCA-TTTTG--GA-AT--TCCATT
gi|4 : tTT-CTTCAATTATTAT-----TATGTTCC----TT---AT-A-GTCCCCTCG-AATCTCAT-GC------------CA-T-T----------C-----TCGACGATCT-----------CAT------T-------GAAATTTT-----------T-CAGA-AAA---TGTATT--------TGAGA-TAGCAGACTTGC--GCAA---TCAAA-ATT-TTG--AGAGAA---CATTAC--CC-------TGTCTGA-----TTATTTCTCT-TTTAGCTGACTGTT--GATGCCC--TC--T-TCAGTCC-ACGAAACATTCCT---CTC--ATCCTTAACTATCTA-AAGCG-AAGAAACTATCA----ACTTGAGACACAATATAG--G-ACTCGT-A-T---AGTTAAGCTGGA---------A--AG-----C-----GTATTAT-TC-ACCGG--AA-C-ATT----------C-C-AAAAGCTT-C-CTGGAC-CTG-AAACGTGAG-ATCTGCCA-AAAATTCTTCGGCCAAAA-T---A-TC-CGTTA-TTTTATTGACA---TCCATtaa
gi|5 : ttT-----TATTTTCC----TT-C-AT-A-TCCCCC--GTATTTTCCTCAC------------CG-T-TTCTTGTATCCC-----TCGA-----TTTCATGTAAAAC--------T-------T----TTT-----------T-CAGGGAAA-GA-GTATT--------TGATG-AAG-AGACTT-T--GCA----GCAAACTTT-TTG--AGCGAAT-ACGTC---TCC-------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTAT-T--GTCCAACACA-------T---TTC--CTCC-TAAA-ATC-A-AAGAT-A-GAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCAT--CT---AGTAGCGATGCT---------GAAAG-----T-----ATTTTAT-TTGACCGG------TATA-GCA-TTTG-C-T-AAAAGTTCGC-GCAGAC-CT-AAAAAAT--G-A--TGCAATAAAAAT-GTC-CCC---A-A---ATTC-CGTGA-TTT----GTCAT--TCc
gi|6 : tattacT-AT-----TATTTTTC----AT--TAT-A-GTCCCCTCG-ATTTTCTCAGT------------AA-T-T----------TCTTCATCGA-----T-----------T--------TTCATGAAA----TCT-----------T-CAGG-AAA-GATGTCTT-------TTTGTA-AAG-AAAATT-T--AAAT---GCAAA-TTT-TTA--ATTGAA--ACACCACTTCC-------GG-----AG---TTATTCCCCT-TTTAG-T-------------TCCG-TC--T-T--GTCC-AAAGA-------TAAACTC--CT--G-AACTATG-A-AAGCT-A-AAGACT-TAA----ACTTTGGACACAAGAA-A--G-TCTCATTA-T---AGT--AGATGTCTGAAA----A--GG-----C-----ATTTGAT-TTGACTGT--AAGCGA-------TTTG-C-CTAAAAGCTCGC-CTGGAC-CTG-AAAAATG-G-A--TGCTA-AAAAA--TTC-GCT---A-A---ATTC-TGTGA-TTTTG--GACAT--TTCAT
gi|7 : ttGGAAGACCTTATAGTGATT------------CT-TATGTTTCTTTTCCTCTTTAT---TAGGGTCTTC----TGCGAGAGACCTCACTGTT-ATTCCACTGT-AT------GTCTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCGCAATTTTCTCAGCCA-TAT----------C-----TTGA-----T-----------CGATTTTCAT-------GAAA-TCT-----------T-CATG-AAA-GATGCCTT-------CTGGGA-AGG-ACAATT-C--ACAT---GCACA-TTA-TTG--AGCGAA--AAGTCACTTCC-------GATCGGGAG---TTATTTCCCT-TTTAG-T-----------GGTTCA-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTACATGT-----AACTAA-GATATT-TCA----ACTTctc
gi|8 : acGGAAGACTTTTCTGTTATTCTACTCATTCTACTGTATGTTT---TTCGTCTATAC---C-------TC------CGAAAGACCTTACTGTT-ATTCTATTGC-ATG----TCTTTTTCCACATTGTTATCATTTTTCTTTG-ATTTTCCCAGC------------CATT-T----------C-----TTAA-----T-----------C--------G-------A----TTTTCATGAAATTAT-CAGG-AAA-GCTGTTGT-------TTGGCA-AAG-AGATTT-T--CAAC---ACATA-TTC-TTG--ACCAAA--ACATCACTTCC-------GGTTGG--G---TT-----CCT-TTTAG-TGAGTTT
gi|9 : tT-AT-----TATTTTCC----TC-C-AT-C-TTCCCCGCG-ATTTTCTCAGC------------CG-T-TT---------C-----TCGA-----C-----------C--------G-------A----TTT-----------T-CAGG-AAA-GATGTGTT-------TTTATA-AAG-AGACTG-T--GCAT---GCAAA-TTT-TCG--AACGAA--ATGTCGCTTCC-------GGTCCGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCTG-TA--T-T--GTCC-ATGCA-------
blockSeqs : C CTACTCATTCT G CTT C TAGGGTCTTCT T T T GT CACA GTT C T T CA AATTTTCTCAGCCATATCTTGATCGATTTTCATGAAATCT A G A T C TTAAATTC G C G C TTTGCATCTC A C C GC TTAT CAGAAGA A GGT C C G T TG GT TA G CA A A ACATTCCT AT C A TAT A A G A AACT GAG CAGTG CATCCAAGTTAGAATGCTTAGAAAAGAGGGTAGT A TA G CGCATCTTG G T A A A A ATC T TTC T ATCAA G G G T A TT GG
blockSeqs : T . . . G CGTCTTCT . G . T . CT . . . CA CGTTTCTTGTATCCCTCGATTTCATGTAAAACTTTTT . . . T A T . . T A GCGCAA A . . . TACG . G . G . C T TG G . . . . C TAAA . C G CTA . . A . . GGA CGGA TATAGTAGATGATGGGAAAAGAC . . A GCATTTG . . . . A . AA . AA G AAAAT . G T . T . .
blockSeqs : CTC . A . T . GT . . . AG AATTTCTTCATCGATTTTCATGAAATCT . . . T C C . . G C TATAT T . . . ATG . G . G . . G TT G . . . . C TAAA . C T CA . . A . . TGG TAGG CACAGTAGATGACGGAAAATACC . . G TTAGA . . . . G . A . AT . ATT . G C . T . .
blockSeqs : . C . T . CT . . . CG CATTTCTTAATCGATTTTCATGAAATTA . . . T A T . . G C TAAAT A . . . TCG . T . T . . T TG G . . . . C T . C G CA . . G . . GG TAT TATAGTAGATGTCTGAAAAGGCA . . G TTTG . . . . C . A . CT . AT . G T . T . .
blockSeqs : . T . T . C . . . AG CATTCTCGACGATCTCATTGAAATTTT . . . T A C . . A A CACAT A . . . ACA . T . T . . G TT G . . . . A C . C G GA . . T . . T TAC CCTCGGGTTGTTTTGTCGGGC . . T TGC . . . . A . A . AT . AA . G G . T . .
blockSeqs : . T . T . . . AG GATTTTTGATTTTCATGAAATTT . . . T C T . . C A TCAAC A . . . AAG . G . C . . C TG A . . . . C T . . . . . . . . . TAG CTAGTAGCGATGCTGAAAGTA . . G TG . . . . . . A . A . AA . . G . . . .
blockSeqs : . . . C . . . C CGTTTCTCGACCGATTT . . . . C T . . G T TGCAT C . . . ACA . G . C . . T . G . . . . T T . . . AAG ATAGTTAAGCTGGAAAGCG . . . . . . . . . . . .
blockSeqs : . . . . . . G TATCTTAATTTGTCT . . . . T . . . G C TGCA T . . . ATG . C . T . . T . . . . . . .
blockSeqs : . . G . . . . . T A . . . CA . . . C . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : T***** TTG*******
originalCons : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATT-GC--TTTG-C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
finalCons : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-ATT-----GTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCT-TTTAG-TGACTTTTTGGAGGTCCG-TC--T-T--GTCC-ACGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCA----ACTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------G--GG-----C-----CTTTGAT-TTGACCGG--AAGCGATTTTG-------C-C-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777 222 333333333333333333 111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 11111 1111111 22222222222 1111 1111111 777777777777777777777777777777777777777777777 11 222222222222222222 1 1 111111111
lowQualScore : 1 22222222222 6 333 1 999999999999999999 6 1 5 777777 9999 444 4 4 0 4 44 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 4 4 4 1 99999999 4 4 4 2 88888888888 1 4 4 55 00000 3333333 1 666 2 3 7 1 33 55 99 55 77 66666666666 66 2 4 8888 5 5 5 5 2222 888 4444444 444444444444444444444444444444444444444444444 5 0 11 5 0 555555555555555555 5 5 5 1 5 9999 5 777 1 555555555 5 4 1 5 1 77 77
lowQualScore : . ........... . ... . .................. . . . ...... .... ... . . . . .. ........................................................................................... . . . . . ........ . . . . ........... . . . .. ..... ....... . ... . . . . .. .. .. .. .. ........... .. . . .... . . . . .... ... ....... ............................................. . . .. . . .................. . . . . . .... . ... . ......... . . . . . .. ..
lowQualScore : 0 77777777777 7 333 0 222222222222222222 7 0 0 444444 4444 777 0 0 8 4 88 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 4 8 6 44444444 0 0 1 4 44444444444 2 0 0 55 99999 0000000 6 444 6 6 3 1 22 66 55 55 33 77777777777 99 5 5 9999 7 7 3 7 1111 888 2222222 000000000000000000000000000000000000000000000 0 9 99 0 2 555555555555555555 0 0 0 1 0 0000 0 777 4 111111111 7 3 0 7 7 99 99
consensus : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCTTTT-AG-TGACTTTTTGGAGGTCCG-TCT--T--GTCCA-CGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCAA----CTTGGGACACAAGAC-G--G-ACTCATCATC---AGTTGNGATGNC---------GG--G-----C-----CTTTGAT-TTGACCGG--A-AGCGA-----TT------TT--GCC-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
Reference ( family-6096 ) : GGAAGACNTTACTGTTATT-TG--------ACTGTATGTTT---TTCNTCTATAT---C---GTCTTC----TGCGGAAGACCTTACTGTT-ATTCNACTGT-AT-----TGTTTTTC----TT-CTAT-A-TTCCCCTCG-ATTTTCCTCGC------------CA-T-T----------C-----TCGA-----T-----------C--------T-------G----TCT-----------T-CAGG-AAA-GATGTCTT-------CTGGTA-AAG-AGANTT-T--GCAT---GCAAA-TTT-TTG--AGCGAA--ACGTCACTTCC-------GGTCGGGAG---TTATTCCCCTTTT-AG-TGACTTTTTGGAGGTCCG-TCT--T--GTCCA-CGTA-------T---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACT-TCAA----CTTGGGACACAAGAC-G--G-ACTCATCACC---AGTTGNGATGNC---------GG--G-----C-----CTTTGAT-TTGACCGG--A-AGCGA-----TT------TT--GCC-AAAAGCTCGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAT-TTC-GCC---A-T---ATTC-TGTNA-TTTTG--GACAT--TCCATT
gi|1 : GGAAGACATTACTGTTATT-TG--------ACTGTATGTCT---TTCTTGNATATGAGT---GTTTTTAAGGTGCGGAAGACATTGCTGTT-ATTTTACTGT-ACATGTATGTTTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T-T----------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GAAGACTT-------CTGGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAA--TTATCACTTCC-------GATTGGGAG---TTATTTCCCTTTT-AG-TGACTTTTTGGAGGTACG-TCT--T--GTCCA-CGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCAA----CTTTGAACACAAGAC-G--G-ATTCATC-CCTCGAGTTGTTTTGTC---------GG--G-----C-----CTTTGGT-TTGGTCGG--A-GGCGATTCGCTT------TT--GCC-TAAAGCTCGC-CTGGAC-CTGCTAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---A-T---ATTT-T-TCA-TTTTG--GACAT--TCCATT
gi|10 : ACACAAGAT-A--T-ACTTATTAT----AGT--AGATGAT---------GG--G-----AAAAGACTTCGAT-TTGACCGG--A-AGCGA-----TT------TG--CCC-AAAAGCTTGC-CTGGAC-CTGAAAAAATG-G-A--TGCCA-AAAAAA-TTC-ACC---A-T---TTTC-TGTGA-TTTAG--GACAT--TTCCTT
gi|11 : TCTT-------TTGGTT-AAG-A------------T---GCAAA-TTT-TTG--AGCGAA--ATGTCACTCCC-------GGTCAGGAG---TTATTCCTCTTTT-AG-TGACTTTTTGGAGGTCTG-TCT--T--GTCCT-AGTA-------TAAACTC--CT---TAGCTAgcaat
gi|12 : GACACAAGAT-A--C-ACTTATCAC----AGT--AGATGAC---------GG--AAAATAC-----CTTCGAT-TTGACCGA--A-AGCAA-----TT------TG--AGT-AAAAGCTCAC-CTGGAC-CTGAAAAAATG-G----TGACG-AAAAA
gi|13 : ---C---GTCTTC----TGCGGAGAACCTTACTGTT-A-TCTAGTG---------TGTTTTTC----TT-CTAT-A-TTa
gi|15 : cttcGGAG---TTATTGCCCTTTA-AG-TGACTTTTTGGAGGTCCG-TCT--T--GTCCattattaaggtcttcct
gi|2 : AT-T-TTCTCGCCG---TTTCTTC-C------------GA-T-T----------T-----TTGA-----T-----------T--------TTCATGAAA----TTT-----------TACAGG-AAAAGATGTATTTTAAATTCTGACAGAAG-AGACTT-TTTGCATCTCGCAAA-TTTCTTGGCAGCGAA--TCGTTACTTTCCAGAAGAGGGAGGGAGGGTTTATTGTCCTTT--AG-TGACTGTTTTGAGGTCCGTTCTG-T--GTCCA--ATA-------T---CGCATCTCCAT-ACT-TT-ATAAGCT-A-GA-ACT-TCTA----CTTGG--CACGAAGC-AGTG-ACTTATCATCCA-AGTTAGAATGCTTAGAAAAGAGG--G-----TAG---TGTTGATATTG-CCAGTAA-AGCGA-----AT------TTAGACC-ATAA---TGCAGTGGACAATAGAAAAATG-GAA--TG--A-AAAAAT-TTCTGAC---A-TCAAATTCGTGTTATTTTTG--GACATGGTCCAT
gi|3 : ttgtgAAGACATTACTGTTTATTTGACTGT-AT------GTCTTTC----TT-GTAT-A-TTTTTCTTG-ATTTTCCTCAC------------TA-T------------C-----TTAA-----T-----------T--------T-------G----TCT-----------T-CAGG-GAA-GA-GACTT-------C-GGTA-GTG-ATAATT-T--ATAT---GCATA-TTT-TTG--AGCAAATTAT-TCACTTTC-------GATTGGGAG---TTATTTCCCTTTT-AGGTGACTTTTTGGAGGTACG-TCT--T--GTCCA-CGTA-------C---CTC--CTCCGTAACTATC-A-AAGCT-A-GAGACC-TCAA----CTT--TACACAAGAC-G--GAATTCATCCTCG--GGTTGTTTTGTC---------GG--G-----------CTTTGGT-TTGGTCGG--A-GGCGA-----TTCGCATCTT--GCC-TAAAGCTCGC-CTGGAC-CTGCGAAAATG-G-A--TGCCA-AAAACT-TTC-GCC---ATT---ATTT-T-TCA-TTTTG--GA-AT--TCCATT
gi|4 : tTT-CTTCAATTATTAT-----TATGTTCC----TT---AT-A-GTCCCCTCG-AATCTCAT-GC------------CA-T-T----------C-----TCGACGATCT-----------CAT------T-------GAAATTTT-----------T-CAGA-AAA---TGTATT--------TGAGA-TAGCAGACTTGC--GCAA---TCAAA-ATT-TTG--AGAGAA---CATTAC--CC-------TGTCTGA-----TTATTTCTCTTTT-AGCTGACTGTT--GATGCCC--TCT--TCAGTCCA-CGAAACATTCCT---CTC--ATCCTTAACTATCTA-AAGCG-AAGAAACTATCAA----CTTGAGACACAATATAG--G-ACTCGT-A-T---AGTTAAGCTGGA---------AA--G-----C-----GTATTAT-TC-ACCGG--A-A-C-A-----TT-----------CC-AAAAGCTT-C-CTGGAC-CTG-AAACGTGAG-ATCTGCCA-AAAATTCTTCGGCCAAAA-T---A-TC-CGTTA-TTTTATTGACA---TCCATtaa
gi|5 : ttT-----TATTTTCC----TT-C-AT-A-TCCCCC--GTATTTTCCTCAC------------CG-T-TTCTTGTATCCC-----TCGA-----TTTCATGTAAAAC--------T-------T----TTT-----------T-CAGGGAAA-GA-GTATT--------TGATG-AAG-AGACTT-T--GCA----GCAAACTTT-TTG--AGCGAAT-ACGTC---TCC-------GGTCTGGA----TTATGCCCTTCTTCAG-TGACTCTTTTGTAGTCC--TCTATT--GTCCAACACA-------T---TTC--CTCC-TAAA-ATC-A-AAGAT-A-GAAACT-TCAAACTACTTGGACCACAAGAT-A--G-ATCCATC--T---AGTAGCGATGCT---------GAAAG-----T-----ATTTTAT-TTGACCGGT-ATAGCA-------T------TT--GCT-AAAAGTTCGC-GCAGAC-CT-AAAAAAT--G-A--TGCAATAAAAAT-GTC-CCC---A-A---ATTC-CGTGA-TTT----GTCAT--TCc
gi|6 : tattacT-AT-----TATTTTTC----AT--TAT-A-GTCCCCTCG-ATTTTCTCAGT------------AA-T-T----------TCTTCATCGA-----T-----------T--------TTCATGAAA----TCT-----------T-CAGG-AAA-GATGTCTT-------TTTGTA-AAG-AAAATT-T--AAAT---GCAAA-TTT-TTA--ATTGAA--ACACCACTTCC-------GG-----AG---TTATTCCCCTTTT-AG-T-------------TCCG-TCT--T--GTCCA-AAGA-------TAAACTC--CT--G-AACTATG-A-AAGCT-A-AAGACT-TAAA----CTTTGGACACAAGAA-A--G-TCTCATTAT----AGT--AGATGTCTGAAA----AG--G-----C-----ATTTGAT-TTGACTGT--A-AGCGA------T------TT--GCCTAAAAGCTCGC-CTGGAC-CTG-AAAAATG-G-A--TGCTA-AAAAA--TTC-GCT---A-A---ATTC-TGTGA-TTTTG--GACAT--TTCAT
gi|7 : ttGGAAGACCTTATAGTGATT------------CT-TATGTTTCTTTTCCTCTTTAT---TAGGGTCTTC----TGCGAGAGACCTCACTGTT-ATTCCACTGT-AT------GTCTTTC----TT-CTAT-A-TTTTTCTTG-ATTTTCCTCGCAATTTTCTCAGCCA-TAT----------C-----TTGA-----T-----------CGATTTTCAT-------GAAA-TCT-----------T-CATG-AAA-GATGCCTT-------CTGGGA-AGG-ACAATT-C--ACAT---GCACA-TTA-TTG--AGCGAA--AAGTCACTTCC-------GATCGGGAG---TTATTTCCCTTTT-AG-T-----------GGTTCA-TCT--T--GTCCA-CGTA-------T---CTC--CTCCGTACATGT-----AACTAA-GATATT-TCAA----CTTctc
gi|8 : acGGAAGACTTTTCTGTTATTCTACTCATTCTACTGTATGTTT---TTCGTCTATAC---C-------TC------CGAAAGACCTTACTGTT-ATTCTATTGC-ATG----TCTTTTTCCACATTGTTATCATTTTTCTTTG-ATTTTCCCAGC------------CATT-T----------C-----TTAA-----T-----------C--------G-------A----TTTTCATGAAATTAT-CAGG-AAA-GCTGTTGT-------TTGGCA-AAG-AGATTT-T--CAAC---ACATA-TTC-TTG--ACCAAA--ACATCACTTCC-------GGTTGG--G---TT-----CCTTTT-AG-TGAGTTT
gi|9 : tT-AT-----TATTTTCC----TC-C-AT-C-TTCCCCGCG-ATTTTCTCAGC------------CG-T-TT---------C-----TCGA-----C-----------C--------G-------A----TTT-----------T-CAGG-AAA-GATGTGTT-------TTTATA-AAG-AGACTG-T--GCAT---GCAAA-TTT-TCG--AACGAA--ATGTCGCTTCC-------GGTCCGGAG---TTATTCCCCTTTT-AG-TGACTTTTTGGAGGTCTG-TAT--T--GTCCA-TGCA-------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGAAGACCTTCTAGGAATTCTATGGTTCTTTTCTTCTTTTATTATTAAGGCTTCGTCTACAACGGAGAC
Unaligned ( gi|16 ): TTTCCACGAAAGACCTTATAGTGATACTTATGTTTCT