lowQualScore : 1 22 33333 1 1 222 333333333333333333333 1 11111 11 22 1 2 2 22 2 2 1 5555555555 1 22 1 2222 77777777777777777777777 1 1 111 88888888888888888888888 111 1 44444444444444444 33 77777 111 1 44444 1 1 1 33333333333 22 1 33 4444444 11 1 1 1 2 111 88888888888888888888 3 888888888888888888888888 4444444444444444 11 1
lowQualScore : 5 33 7 6 33333 5 3 6 1 222 222222222222222222222 3 99999 6 88 11 3 0 0 11 0 0 3 2222222222 3 11 6 1 5 999 6666 7 44444444444444444444444 9 0 0 000 2 3 77777777777777777777777 6 666 0 2 3 88888888888888888 66 66666 444 3 22222 7 1 4 3 3 3 44444444444 2 6 66 6 0 22 2 0 9 77 1111111 33 3 6 3 6 7 6 0 3 6 6 777 3 99999999999999999999 2 6 555555555555555555555555 6 6 7777777777777777 6 33 3 3 1 7
lowQualScore : . .. . . ..... . . . . ... ..................... . ..... . .. .. . . . .. . . . .......... . .. . . . ... .... . ....................... . . . ... . . ....................... . ... . . . ................. .. ..... ... . ..... . . . . . . ........... . . .. . . .. . . . .. ....... .. . . . . . . . . . . ... . .................... . . ........................ . . ................ . .. . . . .
lowQualScore : 0 77 3 7 33333 0 3 0 0 000 000000000000000000000 3 77777 0 33 00 3 0 0 00 0 0 3 7777777777 3 00 0 0 0 333 7777 3 77777777777777777777777 0 0 0 222 5 0 55555555555555555555555 0 000 2 5 3 77777777777777777 77 00000 777 3 00000 3 0 7 3 3 3 88888888888 5 0 00 0 0 00 0 2 0 77 8888888 88 3 0 3 7 3 3 7 3 0 7 777 7 77777777777777777777 3 0 333333333333333333333333 0 0 3333333333333333 0 33 7 3 0 3
consensus : NTGCGTTGTGCTGAAGAACATAC-----AGCTTC-AACCACTTTTCTT--NTCCCTGTCCA-TTAGA-AGGCAT--TGCAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTTTCTGTCCCGTTTTTGGCANTGGATCTAAATTCTTTTTGCTTGACAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-GAAACGTAGTTTACATTTC-TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTATTTTT-ATACATTGCTATCA-A------GTA--T-GTN--TTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTCTGAATCCACT--CCTTCCCATAATATACTCAGTTTATN---TTTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTANATACAATAACTTATTCTGTTAATA-AACATTAAT-----TTAATTCCTTACACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATACGAACCTGGGTTGAACTAT--ATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACGGTGTGCTCTGCTTATATTGGAGTCATCGGCC-T-TGNAA---AT-----NTACG-----TTGAATTTT-TATCATGTT-CAAAGATA-A-------AT-AT-AAGTCTGCGGTGGCCATGTAGA-GTTTG-ATGTAAGTAGAAAGCACTGTAGACACACANACAA-ACTGGTTCCGGTTACA
Reference ( gi|1 ) : TTGGGTTGTGGAGAAGAACCTAC-----AGGTTC-AGCTACTTTTCTT--CTCCCAGCTTAGTTAGATAGGCATTGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTAGGAGACATAGTTTACATTTT-TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTATTTTT-ATACATTGCTACCATA------GTACAT-GTA--TTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTATTATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAAT-----TTATTTCCTTACACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACACGAACCTTGGTTGAGATAT--ATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCC-T-TGGAA---AT-----TTAT------TTGAATTTTATATCACGTT-C-ATGATA-A-------ATGGT-AAGTCTGCGGCGGTCAAACAGA-CTATG-AT-TAAATAGAAAGCACTGTAGACATACAGACAA-ATTGGTTCCGGTTACAC
gi|2 : TGTGTTGTGCTGTAGA-CATAC-----AGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTGCAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-----CATAGTTTACATTTCCTAGATAAGAAAGCTTTT-CTTTCTACGTAGGATTTTT-ATTGAGTAGTATTTTT-ATAAAGTGCTACCAGAAAGAAAGTA----GTG--TTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCAT--AATACCCAGTTTATG---TTTCA--TATTA-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATT--ATTACA--GGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCTGGTTG
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGT--CTCCCTGCTCAAT--GA------------AAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTAGAAAACATAGTTTACATT---------------TTTTTTC----------------TT-AT-GAGTAGTATTTTT-ATACATTGCTATCA-G------GGAGATAGTC--TTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTA
gi|9 : TGTGTTGTGCTGAAGAACATAC-----AGCTCC-AACTACTTTTCTT--ATCCCTGTCCATTTAGAAAGGCATTATGCAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATGAAACGTAGT--ACATTTT-TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTAT----------GTAC-T-GTAGTCTTAAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|3 : T-AT-GAGTAGTATTT----------GATATCATA------GTA---------TTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TA-----------------CCTTCCCATAATATACTCAGTTTATT----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAAT-----TCAAT-CCTTACACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACACGAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTT-TCTGTAA---ATATGTATTAA------TTGAATATTTCATCATGTT-CAAAGATG-A-------A---T-AAGTCTGTGGTGGCCAGGTTGA-GTTTG-GTGTAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAAT-----TTAAATCCTTACACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATACGAACCTGGATTGAACT-T-----TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTT-TGAAA---AT-----ATATGTGTAATTGAATTTT-TATCATTTT-CAAAGATA-ATTGAATTATTAT-AAGTCTGCGGTGGCCATGTAGA-GTTTA-ATGTAGGTAGAAAGCACTGTAGACACACACACAA-ACTGGTTCCGGTTACAaaac
gi|10 : TCCTTACACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATACAAACCTGGGTTGAACT-T-----TATCGAG--AACCAGTa
gi|7 : taaaAT--ATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAATGG-AGT-ATTGGCC-T-TTGAATATAT-----GTACAA----TTGAATTTT-TATCATGTTTC-AAAAGAGA-------ATGATTAAGTCTGCGATGGCGATGCAGAGTTTTGTAT-TAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|19 : GACACACAGACAA-ACTGGTTCCGGTTACA
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 4444444444444444 11 1 1 11 1 2 2 1 4444444444 22222222 55555555555555555 111 77777777777777777777 111 1 1111 111 11 3333 1 222 1 22222 111 1111111111 11 1 1 111 111 66666666666 1 1 111 777777777777 11 1
lowQualScore : 4 2 3 55555 0 0 1 33 8888888888888888 33 0 0 33 0 7 7 7 7 1 3 3 0 0 7777777777 3 0 44444444 2 3 44444444444444444 999 0 8 8 88 0 11111111111111111111 222 8 0 4444 0 444 22 7777 3 3 0 666 3 3 1 3 0 3 55555 333 8 8 5 9999999999 11 0 0 3 2 3 1 3 0 2 2 111 1 777 1 88888888888 0 0 777 333333333333 3 0 66 3 1 0 3
lowQualScore : . . . ..... . . . .. ................ .. . . .. . . . . . . . . . . .......... . . ........ . . ................. ... . . . .. . .................... ... . . .... . ... .. .... . . . ... . . . . . . ..... ... . . . .......... .. . . . . . . . . . . ... . ... . ........... . . ... ............ . . .. . . . .
lowQualScore : 2 5 2 00000 2 0 0 88 0000000000000000 88 0 0 88 0 3 3 3 3 0 7 3 7 0 2222222222 2 2 22222222 0 2 88888888888888888 888 2 0 0 88 6 88888888888888888888 000 0 0 5555 2 555 55 3333 2 2 0 555 2 2 0 5 0 5 00000 000 0 0 0 4444444444 00 0 0 0 0 2 2 2 2 5 0 000 0 555 0 88888888888 0 0 000 555555555555 5 2 55 2 0 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAG-ATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTTTCTGTCCCGTTTTTGGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCC-AACCT-------T--AAGTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AG--AGTTTTTTC-TTCTACGTAGGATTTTT-A-TGAGTAGTATTTT-TATACATTGCTATC-------A-AG----TAC-TGT--NTTTAGAAAGTAT-GGAGGTCCATTAGTGCAATCTACAG-ATAC-TTTTGAATCCAC--TCCTTCCCATAATATACTCAGTTTAT----TTTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAAT-----TTAANTCCTTACACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCC-T-TGGAA---ATATAT----A-----TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGCTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGTCCA-TTAG-A-AGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTTTCTGTCCCGTTTTTGGCANTGGATCTAAATTCTTTTTGCTTGACAAAACCC-AACCT-------T--AAGTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACGTAGTTTACATTTC-----TA----AG--AGTTTTTTC-TTCTACGTAGGATTTTT-A-TGAGTAGTATTTT-TATACATTGCTATC-------A-AG----TA--TGT--NTTTAGAAAGTAT-GGAGGTCCATTAGTGCAATCTACAG-ATAC-TTCTGAATCCAC--TCCTTCCCATAATATACTCAGTTTATN---TTTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTANATACAATAACTTATTCTGTTAATA-AACATTAAT-----TTAATTCCTTACACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACGGTGTGCTCTGCTTATATTGGAGTCATCGGCC-T-TGNAA---ATNTAC----G-----TTGAAT-TTT-TATCATGTTC--AAAGATAA---A-----T-ATAAGTCTGCGGTGGCCATGTAGAGTTTGATG-TAAGTAGAAAGCACTGTAGACACACANACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAG-ATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCC-AACCT-------T--AAGTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAG--AGTTTTTTCATTCTACGTAAGATTTTT-A-TGAGTAGTATTTT-TATACATTGCTACC-------ATAG----TACATGT--ATTTAGAAAGTGT-GGATGTCCATTAGTGCAATCTACAG-ATAT-TTTTGAATCCAC--CCCTTCCCAT--TATACTCAGTTTATTATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAAT-----TTATTTCCTTACACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCC-T-TGGAA---ATTTAT----------TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTACACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAG-ATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------TA-AAGTCTGGCTCAAGGTGAATAGGTCTCTT---T--------ACATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTATTTT-TATAAAGTGCTACCAGAAAGAA-AG----TA---GT--GTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATA--ATACCCAGTTTATG---TTTC-ATA-TTA-CACTTGC-C--ATTTTGCTAAAGA-TTACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTA--TTATTACA--GGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-A-TGAGTAGTATTT----------GATATC-------A-------TA---GT--ATTTAGAAAGTAT-GGAGGTCCATTAGTGCAATCTACAG-ATAC-----------------CTTCCCATAATATACTCAGTTTAT----TTTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAAT-----TCAAT-CCTTACACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTT-TCTGTAA---ATATGTATTAA-----TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAAT-----TTAAATCCTTACACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTT-TGAAA---ATATAT----GTGTAATTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA---A------------TG--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TC-TTTTTCTGTCCCG-TTTTGGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCC-AACCTTAGAATGT--AAGTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-A-TGAGTAGTATTTT-TATACATTGCTATC-------A-GGGAGATA---GT--CTTTAGAAAGTAT-GGAGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCC-AACCT-------TTTAAGTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AG--AGTTTTCT--TTCTACGTAGGATTTTTCA-TGAGTAGTATTTTTTATACATTACTAT-----------G----TAC-TGTAGTCTTAAAAAGTAT-GGAGGTTCATTAGTGCTATCTACAG-ATAT-TTTTGAATCCAC--TCCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCC-T-TTGAATATATGTAC----AA----TTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAA-AGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 22 333333 1 1 11 1 2 2 1 1 1 3333333333 1 333333 444444444444444444 111 777777777777777777 111 1 11 111 333333 1 222 1 1111111111 11 1 1 111 1 666666666 1 1 111 777777777777 11 1
lowQualScore : 4 1 3 55555 0 0 1 33 33 3 444444 0 0 33 0 3 3 3 3 0 7777777777 0 3 0 000000 3 888888888888888888 999 0 8 8 8 0 0 000000000000000000 222 8 0 33 0 0 444 3 3 222222 3 3 0 666 3 3 1 1 0 1 8 8 8 8 5 9999999999 11 0 0 1 3 1 3 0 2 111 0 0 777777777 0 0 777 555555555555 1 0 66 3 0 0 3
lowQualScore : . . . ..... . . . .. .. . ...... . . .. . . . . . . .......... . . . ...... . .................. ... . . . . . . .................. ... . . .. . . ... . . ...... . . . ... . . . . . . . . . . . .......... .. . . . . . . . . ... . . ......... . . ... ............ . . .. . . . .
lowQualScore : 2 0 2 00000 2 0 0 88 22 5 555555 0 0 88 0 7 7 3 3 0 2222222222 0 2 2 222222 2 222222222222222222 888 2 0 0 0 8 6 000000000000000000 000 0 0 22 8 2 555 2 2 777777 2 2 0 555 2 2 2 0 0 0 8 0 0 0 0 4444444444 00 0 0 0 2 2 2 2 5 000 2 0 000000000 0 0 000 222222222222 0 2 55 2 2 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCC-T-TGGAA-ATATGTGT---A---TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTTTCTGTCCCGTTTTTGGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAANTCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCC-T-TGGAA-ATATAT-----A---TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAGATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTACCAT------AG----TACATGT--ATTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTAT-TATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAATTTATTTCCTTA-CACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCC-T-TGGAA-ATTTAT---------TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-------CATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTA-TTTTTATAAAGTGCTACCAGAAAGAAAG----TA---GT--GTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATAATA--CCCAGTTTATGT----TTCA-TATT-A-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATTATTACAGGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-AT-GAGTAGTA-TTT---------GATATCA-------------TA---GT--ATTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-----------------CTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAATTCAA-TCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTT-TCTGTAA-ATATGTATTA-A---TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAATTTAAATCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTT-TGAAA-ATATATGTGTAA---TTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA-----------AT---G--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------GGGAGATA---GT--CTTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTAT----------G----TAC-TGTAGTCTTAAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCC-T-TTGAATATATGT-----ACAATTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAAAGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 22 333333 1 1 11 1 1 1 1 1 1 3333333333 1 333333 444444444444444444 111 777777777777777777 111 1 11 111 333333 1 222 1 1111111111 11 1 1 1 222 444444 1 1 111 777777777777 11 1
lowQualScore : 4 1 3 55555 0 0 1 33 33 3 444444 0 0 33 0 3 3 3 3 0 7777777777 0 3 0 000000 3 888888888888888888 999 0 8 8 8 0 0 000000000000000000 222 8 0 33 0 0 444 3 3 222222 3 3 0 666 3 3 1 1 0 1 6 8 8 8 5 9999999999 11 0 0 1 3 1 3 0 2 0 2 777 222222 0 0 777 555555555555 1 0 66 3 0 0 3
lowQualScore : . . . ..... . . . .. .. . ...... . . .. . . . . . . .......... . . . ...... . .................. ... . . . . . . .................. ... . . .. . . ... . . ...... . . . ... . . . . . . . . . . . .......... .. . . . . . . . . . . ... ...... . . ... ............ . . .. . . . .
lowQualScore : 2 0 2 00000 2 0 0 88 22 5 555555 0 0 88 0 3 3 3 3 0 2222222222 0 2 2 222222 2 222222222222222222 888 2 0 0 0 8 6 000000000000000000 000 0 0 22 8 2 555 2 2 777777 2 2 0 555 2 2 2 0 0 0 0 0 0 0 0 4444444444 00 0 0 0 2 2 2 2 5 0 5 555 000000 0 0 000 222222222222 0 2 55 2 2 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCT-TNGAA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCT-TGGAA---ATATGTGT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAGATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTACCAT------AG----TACATGT--ATTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTAT-TATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAATTTATTTCCTTA-CACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCCT-TGGAA---ATTTAT------TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-------CATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTA-TTTTTATAAAGTGCTACCAGAAAGAAAG----TA---GT--GTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATAATA--CCCAGTTTATGT----TTCA-TATT-A-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATTATTACAGGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-AT-GAGTAGTA-TTT---------GATATCA-------------TA---GT--ATTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-----------------CTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAATTCAA-TCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTTTCTGTAA---ATATGTATTAA-TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAATTTAAATCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCT-TTGAAAATATATGTGTA-A-TTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA-----------AT---G--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------GGGAGATA---GT--CTTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTAT----------G----TAC-TGTAGTCTTAAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCCT-TTGAAT--ATATGTAC--AATTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAAAGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 22 333333 1 1 11 1 1 1 1 1 1 3333333333 1 333333 444444444444444444 111 777777777777777777 111 1 11 111 333333 1 222 1 1111111111 11 1 1 1 222 3333 1 1 111 777777777777 11 1
lowQualScore : 4 1 3 55555 0 0 1 33 33 3 444444 0 0 33 0 3 3 3 3 0 7777777777 0 3 0 000000 3 888888888888888888 999 0 8 8 8 0 0 000000000000000000 222 8 0 33 0 0 444 3 3 222222 3 3 0 666 3 3 1 1 0 1 6 8 8 8 5 9999999999 11 0 0 1 3 1 3 0 2 1 0 777 3 2 7777 0 0 777 555555555555 1 0 66 3 0 0 3
lowQualScore : . . . ..... . . . .. .. . ...... . . .. . . . . . . .......... . . . ...... . .................. ... . . . . . . .................. ... . . .. . . ... . . ...... . . . ... . . . . . . . . . . . .......... .. . . . . . . . . . . ... . . .... . . ... ............ . . .. . . . .
lowQualScore : 2 0 2 00000 2 0 0 88 22 5 555555 0 0 88 0 3 3 3 3 0 2222222222 0 2 2 222222 2 222222222222222222 888 2 0 0 0 8 6 000000000000000000 000 0 0 22 8 2 555 2 2 777777 2 2 0 555 2 2 2 0 0 0 0 0 0 0 0 4444444444 00 0 0 0 2 2 2 2 5 0 0 555 2 5 0000 0 0 000 222222222222 0 2 55 2 2 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTNG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAGATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTACCAT------AG----TACATGT--ATTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTAT-TATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAATTTATTTCCTTA-CACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCCTTGG-AA---AT-T-TAT----TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-------CATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTA-TTTTTATAAAGTGCTACCAGAAAGAAAG----TA---GT--GTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATAATA--CCCAGTTTATGT----TTCA-TATT-A-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATTATTACAGGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-AT-GAGTAGTA-TTT---------GATATCA-------------TA---GT--ATTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-----------------CTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAATTCAA-TCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTTTCTGTAA---ATATGTATTAA-TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAATTTAAATCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTTTG-AAAATATATGTGTA-A-TTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA-----------AT---G--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------GGGAGATA---GT--CTTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTAT----------G----TAC-TGTAGTCTTAAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCCTTTG-AAT--ATATGTAC--AATTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAAAGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 22 333333 1 1 11 1 1 1 1 1 1 3333333333 1 333333 444444444444444444 111 777777777777777777 111 1 11 111 333333 1 222 1 1111111111 11 1 1 1 222 3333 1 1 111 777777777777 11 1
lowQualScore : 4 1 3 55555 0 0 1 33 33 3 444444 0 0 33 0 3 3 3 3 0 7777777777 0 3 0 000000 3 888888888888888888 999 0 8 8 8 0 0 000000000000000000 222 8 0 33 0 0 444 3 3 222222 3 3 0 666 3 3 1 1 0 1 6 8 8 8 5 9999999999 11 0 0 1 3 1 3 0 2 0 777 3 2 7777 0 0 777 555555555555 1 0 66 3 0 0 3
lowQualScore : . . . ..... . . . .. .. . ...... . . .. . . . . . . .......... . . . ...... . .................. ... . . . . . . .................. ... . . .. . . ... . . ...... . . . ... . . . . . . . . . . . .......... .. . . . . . . . . . ... . . .... . . ... ............ . . .. . . . .
lowQualScore : 2 0 2 00000 2 0 0 88 22 5 555555 0 0 88 0 3 3 3 3 0 2222222222 0 2 2 222222 2 222222222222222222 888 2 0 0 0 8 6 000000000000000000 000 0 0 22 8 2 555 2 2 777777 2 2 0 555 2 2 2 0 0 0 0 0 0 0 0 4444444444 00 0 0 0 2 2 2 2 5 0 555 2 5 0000 0 0 000 222222222222 0 2 55 2 2 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAGATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTACCAT------AG----TACATGT--ATTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTAT-TATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAATTTATTTCCTTA-CACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCCTTGG-AA---AT-T-TAT----TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-------CATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTA-TTTTTATAAAGTGCTACCAGAAAGAAAG----TA---GT--GTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATAATA--CCCAGTTTATGT----TTCA-TATT-A-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATTATTACAGGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-AT-GAGTAGTA-TTT---------GATATCA-------------TA---GT--ATTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-----------------CTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAATTCAA-TCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTTTCTGTAA---ATATGTATTAA-TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAATTTAAATCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTTTG-AAAATATATGTGTA-A-TTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA-----------AT---G--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------GGGAGATA---GT--CTTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTAT----------G----TAC-TGTAGTCTTAAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCCTTTG-AAT--ATATGTAC--AATTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAAAGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
blockSeqs : T C A CTAGT C A TT TT T ATTG T C TT A T T A C A TAGAATGT A A GAAA T TCCTAGATAAGAAA TT C T T GAAAGAAAGTA AGT G A AT TTT A T GT A T A GC T T A C C G A T C G G GATATATATA GG T C G T T T C T AAT A G TAA A . CAA TTGAATTATTA G AT A T T
blockSeqs : C G A . . C . T A TATG . . . . . . . . . TTT . A TGAA T TTTAAGA C . . . GGGAGATA G . . T T A T T A T . TG T T C A . T A . . . G ACTT . . . T T T T C . T A G AA . . A TGAT T G A . T
blockSeqs : T C . . . A . . . G . . . . . T . . . . . T . . . GTACT A . . . . A . . . . . . . T A . T A . . . G ACTT . . . T . C . . . . A G AA . . A A T G . . .
blockSeqs : . . . TA C . . . . . . .
blockSeqCons : GTA***************
originalCons : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCA-------AG----TAC-TGT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
finalCons : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTA-TTTTTATACATTGCTATCAGTA---------------GT--NTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT
Alignments
lowQualScore : 22222 1 11 22 333333 1 1 11 1 1 1 1 1 1 3333333333 1 333333 444444444444444444 111 6666666666666666 111 1 11 111 333333 1 222 1 1111111111 11 1 1 1 222 3333 1 1 111 777777777777 11 1
lowQualScore : 4 1 3 55555 0 0 1 33 33 3 444444 0 0 33 0 3 3 3 3 0 7777777777 0 3 0 000000 3 888888888888888888 999 0 8 8 0 8 0 0000000000000000 444 1 0 8 0 33 0 0 444 3 3 222222 3 3 0 666 3 3 1 1 0 1 6 8 8 8 5 9999999999 11 0 0 1 3 1 3 0 2 0 777 3 2 7777 0 0 777 555555555555 1 0 66 3 0 0 3
lowQualScore : . . . ..... . . . .. .. . ...... . . .. . . . . . . .......... . . . ...... . .................. ... . . . . . . ................ ... . . . . .. . . ... . . ...... . . . ... . . . . . . . . . . . .......... .. . . . . . . . . . ... . . .... . . ... ............ . . .. . . . .
lowQualScore : 2 0 2 00000 2 0 0 88 22 5 555555 0 0 88 0 3 3 3 3 0 2222222222 0 2 2 222222 2 222222222222222222 888 2 0 0 8 0 6 2222222222222222 000 0 8 0 0 22 8 2 555 2 2 777777 2 2 0 555 2 2 2 0 0 0 0 0 0 0 0 4444444444 00 0 0 0 2 2 2 2 5 0 555 2 5 0000 0 0 000 222222222222 0 2 55 2 2 0 2
consensus : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTATTTTT-ATACATTGCTAT---CA--G--AGA---TA---GTNTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
Reference ( family-6075 ) : NTGCGTTGTGNTGAAGAAC-----ATACAGCTTC-AACCACTTTTCTTNT--CCCTGCCCA-TTAGATAGGCAT--TG--CAAGC-TTTTGCTGC-GTGATTTT--CTCGCCTACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACCTTA-G-AA-ACATAGTTTACATTTT-----TA----AGA--GTTTTTTC-TTCTACGTAGGATTTTT-AT-GAGTAGTATTTTT-ATACATTGCTAT---CA--G--------TA---GTNTTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-TTTTGAATCCACT--CCTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTNATA-AACATNAATTTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-GTCTCAGAGGACATAGTTCAAGAATATAC-GAACCTGGGTTGA-AC-TATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTNAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGCCTTTG-AA---ATATGTAT--A-TTGAAT-TTT-TATCATGTTC--AAAGATAAT--A-----T-ATAAGTCTGCGGTGGCCANGCAGAGTTTGGTG-TAAGTAGAAAGCACTGTAGACACACAGACAAAC-TGGTTCCGGTTACA
gi|1 : TGGGTTGTGGAGAAGAAC-----CTACAGGTTC-AGCTACTTTTCTTCT--CCCAGCTTAGTTAGATAGGCAT--TGTGCAAGC-TTTTGCAGC-ATGACTTT--CTCGCCTGAAT-TCTTTTT-CTGTCCCGTTTT-GGCAAAGG-TCTAAATTCTTTTTG-TTGATAAAACCCAA-CCT-------T--AA-GTCCTGCCCAAGGTGAATAGATATCTTACCTTA-G-GAGACATAGTTTACATTTT-----TAGATAAGA--GTTTTTTCATTCTACGTAAGATTTTT-AT-GAGTAGTATTTTT-ATACATTGCTAC---CATAG--------TACATGTATTTAGAAAGTGTGG-ATGTCCATTAGTGCAATCTACAGA-TAT-TTTTGAATCCACC--CCTTCCCAT--TATACTCAGTTTAT-TATTTTTCAATTTTTA-CACTT-C-TTAATTTTGCTAAAGATTTACTGTTGTTGTTATTCCTATATACAATAACTTATTCTGTTTATA-AACATAAATTTATTTCCTTA-CACTGGCGTTTTCATTTGTTAGTTCCG-GTCTCATTGGACATAGTTCAAGAATACAC-GAACCTTGGTTGA-GA-TATATATATCGAG--AACCAGTT-GCAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCATATGTTGCAATCATTGGCCTTGG-AA---AT-T-TAT----TTGAAT-TTTATATCACGTTC---ATGATAA---A-----TGGTAAGTCTGCGGCGGTCAAACAGACTATGAT--TAAATAGAAAGCACTGTAGACATACAGACAAAT-TGGTTCCGGTTACA
gi|10 : tTAAATCCTTA-CACTGGTGTTTTCATTCGAGAGTTCTG-ATCTCAGAGGACATAGTTCAAGAATATAC-AAACCTGGGTTGA-AC-T-T---TATCGAG--AACCAGTc
gi|19 : GACACACAGACAAAC-TGGTTCCGGTTACA
gi|2 : TGTGTTGTGCTGTAGA-C-----ATACAGCTTCCAACCACTTTTCTTATTTCCCTGTCCA-TTAGATAGGCATATTG--CAAGC-TTTTGCTGCCGTGATTTTTTCTCGCCTACATATCTTTTTTCTGTCCCGTTTTTGGTATTGGATCTAAATTCTTTTTGCTTGATAAAACCCAAACCT-------T--AAAGTCTGGCTCAAGGTGAATAGGTCTCTT----TA-------CATAGTTTACATTTCCTAGATA----AGAAAGCTTTTCT-TTCTACGTAGGATTTTT-ATTGAGTAGTATTTTT-ATAAAGTGCTAC---CA--GAAAGAAAGTA---GTGTTTAGAAAGTATGGGAGGTACATTA-TGCAACTAACAGAATACATTCTGAATTCACTTTCCTTCCCATAATA--CCCAGTTTATGT----TTCA-TATT-A-CACTTGC-C--ATTTTGCTAAAGATT-ACTGCTGTTGTTATTCCTAAATACAATAATGTATTCTGTTCATACAACATGAATGTGGATTATTATTACAGGTGTTTTCATTCGATAGTTCTGCGTCTCAGAGAACATAGTTTAAGAATATATGGGACCT-GGTTGact
gi|3 : T-AT-GAGTAGTATTT----------GATAT---CA-----------TA---GTATTTAGAAAGTATGG-AGGTCCATTAGTGCAATCTACAGA-TAC-----------------CTTCCCATAATATACTCAGTTTAT-T----TTCAATATTTA-CACTG---TTAATTTTGCTAAAGATTTACTTTTGTTGATATTCCTACATACAATAACTTATTCTGTTAATA-AACATTAATTCAA-TCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTTAGAGGAAATAGTTCAAGAATACAC-GAATCTGGGCTGAGATATATATATATCGAG--AACCAGTT-GTAGTATTTATACTACG-TTGAGTGTACAGTGTGCTCTGCTTATGTTGGAGTCATTGGTTTCTGTAA---ATATGTATTAA-TTGAATATTT-CATCATGTTC--AAAGATGA-----------ATAAGTCTGTGGTGGCCAGGTTGAGTTTGGTG-TAAGTAGAAAGCAC
gi|4 : accgttaaggcctgtgggcctcttgcCAATATTTAACAATT-TGTTAATTTTGCTAAAGATTTACTGCTGTTGTTATTCCTATATACAATAACTTATTCTGTTATTA-AACATTAATTTAAATCCTTA-CACTGGTGTTTTCATTTGAGAGTTCTG-GTCTCAGATGACATAGTTCAAGAATATAC-GAACCTGGATTGA-AC-T-T---TATCGAT--AACCAGTT-GTAGTATTTATACTACG-TTTAGTGTACAGTGTGCTCTGCTTATACTGAAGTCATCGGCCTTTG-AAAATATATGTGTA-A-TTGAAT-TTT-TATCATTTTC--AAAGATAATTGAATTATT-ATAAGTCTGCGGTGGCCATGTAGAGTTTAATG-TAGGTAGAAAGCACTGTAGACACACACACAAAC-TGGTTCCGGTTACAaaac
gi|5 : TGCGTTGTGGTGAAGAACCTAGTATAGAGTTTC-AACCACTTTTCGTCT--CCCTGCTCA-----------AT---G--AAAGA-TTTTGCTGA-ATGATTTT--CTCTCCAACAT-TCTTTTT-CTGTCCCGTTTT-GGCAATGG-TCTAAATTCTTTTTG-TTGACAAAAGCCAA-CCTTAGAATGT--AA-GTCTGGCTCAAGGTGAATAGGTCTCTTACTTTA-GAAA-ACATAGTTTACATT-------------------TTTTTTC----------------TT-AT-GAGTAGTATTTTT-ATACATTGCTAT---CA--GGGAGA---TA---GTCTTTAGAAAGTATGG-AGGTCTATGAGTGCAATCTAa
gi|6 : AAAACCCAA-CCT-------TTTAA-GTCTGGCTCAAGGTGAATAGATCTCTTACCTTATG-AA-ACGTAGT--ACATTTT-----TA----AGA--GTTTTCT--TTCTACGTAGGATTTTTCAT-GAGTAGTATTTTTTATACATTACTATGTACT--G--------TA---GTCTT-AAAAAGTATGG-AGGTTCATTAGTGCTATCTACAGA-TAT-TTTTGAATCCACT--CCTTCCCATAATATACTCAG
gi|7 : ATATATATCGAGGGAATCAATTTGTAGTTTTTATACAACGCTTTAGTGTACGGTATGC-CTGCCTAAAT-GGAGT-ATTGGCCTTTG-AAT--ATATGTAC--AATTGAAT-TTT-TATCATGTTTCAAAAGAGAATG-A-----T--TAAGTCTGCGATGGCGATGCAGAGTTTTGTATTAAGTATAAAACACTGTAAACAC-TAAACAATCTTGGTTCCAG-TACA
gi|9 : TGTGTTGTGCTGAAGAAC-----ATACAGCTCC-AACTACTTTTCTTAT--CCCTGTCCATTTAGAAAGGCATTATG--CAAGCTTTTTGCTGC-GTGATTTT--CTCGCCTACAT-TC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACCGTCAAGGCCTGTGGGCCTCTTGTTAAACTTTGACATTCCAAATAATACTTGTACAAAATTTTCTTCAACAATTTCCTTATAGTATATGCATGTAAAAATTAATTTAACATTTAATCTTTGTAAATTTTGCATGTAAAAATTTGCTTTAGTATTTCCTGCAATACAGTCA
Unaligned ( gi|11 ): TGACCATTAAGGCATGTGGGCCTCTTGTTATGAGATAATATGTATCATGATTGAAAAGATAT
Unaligned ( gi|12 ): GTTAAGGCCTGTGGGCCTCTTGTTATGTGTGTGTGGTTGACATAGATATTTT
Unaligned ( gi|13 ): CGTTAGGGCCTGTGGGCCTCTTGTTAAATTTGGAAGTTGCTAACATACACTA
Unaligned ( gi|14 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTTTTGTAGTACCTGGTATCA
Unaligned ( gi|15 ): ACCGTTAAGGCCTGTTGGCCTCTTGTTATTTGATGTGATATCAT
Unaligned ( gi|16 ): GACCGTTAAGGCCTTTGGGCCTCTTGTTATGTATGTTATTTAA
Unaligned ( gi|17 ): GACCATTAAAGCCTGTGAGCCTCTTGTTACGAAACAATGG
Unaligned ( gi|18 ): CTGTTAAGGCCTGTGGGCCTCTTGTTAAATTA
Unaligned ( gi|20 ): GACCATTAAGGCTTGTGGGCCTCTTGTTATT
Unaligned ( gi|21 ): GACCGTTAAGGCCTGTGGGTCTCTTGTTT