lowQualScore : 111111111111111111111
lowQualScore : 11 2222222222 22222 11111 111 1111 1 2222 1 1111 11 4 1 4 2222 222 4444 2 1 11 44444444444444444 1111 11 1 22222 1 1 333 666666666666666666666666666666666 1 1 5555555555 111 3333 000000000000000000000 44 1 2 1 33 5555 44444 4444444444444 33 4 111 444 1 11 1 1 22 55 1 33 1 4 1 11 111 1 222 1
lowQualScore : 33 0000000000 77777 0 44 5 8 0 9999 6 0 2 8 77777 4 8 2 8 555 3 8 8 7777 1 0 2 8 0 0 2222 8 8 3 0 0 8 8 8 8 0 8 8 22 55 3 8 6 0 3 9 5555 11 0 1 0 0 0 0000 88 555 9999 5 8 6 9 66 99999999999999999 0 3333 00 2 0 22222 0 0 000 3 777777777777777777777777777777777 3 3 4444444444 333 7 5555 2 000000000000000000000 3 66 3 6 3 5 2 3 99 5 4 2 00 2 2 6666 6 2 88888 88 2222222222222 00 0 777 777 3 0 33 6 0 22 55 0 11 5 3 0 1 3 6 55 2 666 33 0 1 3 333 7 3
lowQualScore : .. .......... ..... . .. . . . .... . . . . ..... . . . . ... . . . .... . . . . . . .... . . . . . . . . . . . . .. .. . . . . . . .... .. . . . . . .... .. ... .... . . . . .. ................. . .... .. . . ..... . . ... . ................................. . . .......... ... . .... . ..................... . .. . . . . . . .. . . . .. . . .... . . ..... .. ............. .. . ... ... . . .. . . .. .. . .. . . . . . . .. . ... .. . . . ... . .
lowQualScore : 55 8888888888 88888 2 88 4 0 6 0000 7 7 2 3 00000 0 0 5 8 222 2 0 0 2222 4 0 8 0 8 8 4444 0 0 8 8 8 0 0 2 0 8 0 0 88 88 2 0 7 8 5 8 4444 00 0 8 8 0 8 0000 88 000 4444 0 0 0 0 55 88888888888888888 2 2222 22 5 0 88888 0 0 555 2 000000000000000000000000000000000 3 3 0000000000 777 3 5555 5 555555555555555555555 0 00 0 0 0 0 5 0 00 0 0 5 55 5 5 0000 0 5 55555 55 5555555555555 00 0 777 777 2 0 88 8 0 22 00 5 00 0 0 0 0 3 7 00 5 222 55 7 0 3 333 3 3
consensus : TTTGCTGAATAATCTTTNAAAAGCTCTATA-CGATGAN----GTCACNTTGATGTTATCGCTATACCACACATT-TTAGCTCTCCGATCTACAAG-AACACTCTCTTAGTGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTAACA-NCTGTATCCTTTCATNA-AT-T-GTCCCTACTTGATGTTT-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCACGGGAAT-CCTTACA-CT-GATGGCCGTCGTCATCGTNAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAACTTTGGT-ACAAAAATGT-CCACGCCCTN-ATGAAA---GACATGTTG-ACTCCTGAA-TC-AAA-CCTTGCTGTGGCCG-AACAGAAAA-TTTCTGTAC-TGA-AAN--AGAGGTACG-AAGAA-TTGAAAAC-TGAAAACAA-GGCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACGTCTTTGCCAGAAATGNAA-NGAAACNTCACCCAC-GAATTTCTGAAGATNACAAAAGNGTTCCGAAGGAATANTGATGTCGGATCGGAAAGCATTTGAANTGAATGTNTCACGCGCTACTGNCNGACATCAAACGATTGAGGTNCGGTAACTTGTCNATAAACCTTGGCTG-GACCTGAACACACACACTCGT-CGAA-T-GAAAGT--GACATTCC-TGAC--ATGATTGACCAAAAG-ATCCTAGTGATG--TTCGAATCTAATGAACTCTTCATTGGANA-ATTTCAATGCGAGG-TTAATGGATACAGGAAACAAA-TTTCAGCTCGAGTTTCGAACCTCAAGAATTCACATT-CCGGAGTTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
Reference ( gi|1 ) : TTTGCTGAATAATCTTAAAAAAGCTCTATA-CGATGAG----GTCACTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTACAAG-AGCACCCTCTTAGAGGAGGGGTACATTTGTCGTATAATCACAA-TCATCATCCTACCA-TTTGTATCCTTTCATGA-AT-T-GTCCCTCCTTGGTGTTT-GGTATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCACGCGAAT-CCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGAC-GACACTGTACACAACTTTACAAAACAAAACATCGTCGGTGTGGA--TGGTCATAAACGAGGACGTGTTCAGACAACT-CTGAATCAGAATACTATCATCAGGA-TGAACTTTGGTTACCAAACTGT-C-ACGCACTC-ATGAAA---AGAATGTGA-ACTTCTGAA-TC-AAA-CCTTGCTGTGGCCG-AACAG-AAA-TTTCTGTAT-TGA-AAA--AGAGGTACGTAAGAA-T--GAAAC-AGAAAATAACGGCG-GTTG-AAA-AGGAGAA-GTAGAGGTTCAAAGAAGACATCTTTGCCAGAAATGCAAGAGAAATATCGATCACAGAAGTTCTGAAAATAACGGAAGAGTTCCGAAAGAATATTGATGTCGGATCGGAAGACATTTGAGATCAATGTATCACACACTACTGGCCGACATCAAACGGTTGAAGTGC-GT--CTTGTCGGT-A-CTTTGGCTGAGACCTAAAACCACACACTCGTGCAAA-T-GAAAGTTGAACATTCC-TGAC--ATGATTGACCAGAAG-ATT-TAGTGATGATTTCGAGTCTAATGAACTGTTCATTGGAAATATTTCAATGCAAGG-TTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATT-CAGGAGTTTTGTCAACTGTCACTGGTAAATAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|4 : TTTGCTGAATAATCTTTAAAAAGCTCTATAACGATGAG----GTCACTTTGATGTTATCGCTATATCACACATTGTTAGCTCT-CGTTCTACAAGAAGCACCCTCTTAGAGGAGGGGTAC--TTGTCGTATAATCACAATTCATCAT-CTACCATTTTGTATCCTTTCATGACAT-T-GT-CCTCCTTGGTGTTT-GGTAT-AAT-CAG----ATGTCCTCACGGTTCAGTGT-ATACGAC-TGCC-ACATGCATCGCTCACGCGAAT-CC-TACATCTGGATAGGCGTCGTCTTCG--AAAA---CGGCCGTC-TCTCTCCTAACAGACAGACACTGTACA-AA-TTTAC--AACAAAACATCGTCGGTGTGGATTTGGTCA-AAATGTGAACGTGTTCAGAC-ACTACTG-ATCAAGAAACTAT-ATCAGGA--GAAC-TTGGT---CAAAATGT-C-ACGTCCTG-ATGGGAGATAGTAGTTGACACT--CGAA-TC-AAA-ACATA-TGTGGCCGCAACAG-GG---TTCTGTTTATGA-AAGACAGAGGTAC--AAGAT-TA-AAAAC-TGAAA--AACAGCATGTTG-AAACAGGAG-A-GT--AAGTTCAAA-AAGACATCT
gi|7 : tTTTGCTTAATAATCTTACAAAACCTTT-TA-CAATGAC----GTTATTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTATAAG-AGCACCCTCTTAGAGGAGGGGAAAATTTGTCGTATAATCACAA-TCATCATCCAAGCA-TCTGTATCCTTTCATTA-AT-TCGT-CCTACTTAATGTTT-GGTATAAATACAGC-CCTTGC-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCACGGGATT-CCTTACA-CT-GATGACCGTCGTCATCGTAAAAACTGCTGCCATC-TCTCTCATAACAGGT-GACAATGTACACAACTCTACAA
gi|8 : tTTTGCTGAATAATCTTTCAAA-GATCTGAA-TAATAAC----GTAACAGTGATGTTATCGCTGTACAACACATT-TCAGCAATTTAATCTACAAG-AAAACACTCTTAGTGGAGGGGGAAATGTGTTGAATAATC
gi|11 : aattgaaagaaatatctgttttcttcaaaaataaaacatttaatgaaaaacactgacatttcaattttaagtattttatttttcgaaaattcataatctcaagatataattcaaatgtaagtgtaactaagtagcacgccatctgtttgtaacaagatagcgatgtatcgttgcaatatGTTGAATAATCTTTAAAA-----TATT-TGAAGAACAGTGTCACACTGATGTTTTTATCATACCACACATT-TTCGCTCTCTAATCTACAAG-AACACTCCCTTAGTGGAGGGGAAAAATTAACGTATAATC
gi|6 : ATACCACATATT-TTCGCTCTCTAATCTAGAAG-AACACTCTCTTAGTTGAGTGGAAAATTTGACGTATAATCGTAA-TCnatctgtaatc
gi|2 : TCTACAAG-AACACTTTCTTAGTGGAGGGGAAAAATTAACGTATAATCATAA-TCATCATCCTAACA-GCTGCATCCTTTCATTA-AT-T-TTCCTTACTTGATGTTT-GGTATAAATACAGC-------------GG-TCAGTGTAATGCGACTTGCCAACATGGA-TG-TCACGGGAAT-CCTTACA-CT-GCTGGTCGTCGTCATCGTGAAAACCG--GCCGTCCTCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACTTGGACGTGTTCAGACATTTTCTGAATCAAGAAACTATCATCAGGGGTGAACTT-GGT-ACAAAA-TGT-CCACGCCCTTGATGAAA---GATATGTTG-ACT-CTTAA-TC-AAAACCTTGCTGTGTCCG-AACAG-AAAATTTCTGTAC-TGA-AAC--AG-GGTA-G-AAGAA-TTAAAAAC-TGAAACCAA--GTG-CTGA-AAA-AGGAGA--GTACAG-TTCAAAGA-GACATCTT-GC-AGAAATGCAA-AGAA-TATCA--CAC-GAA-TTCTGAAAATAACA-AAGAGTTCCGAAGAAATATTGATGTCGGATCGGAA-ACATTTGAAATGAATGTATCACACAC-ATTGGCCGACATCAA-CG-TTGAGGTGC-GTAACTTGTCGAT-AACTTTG-CTG-GACCTAAACACACACATTCGT-CGAA-TTGAAAGT-GATCATTCCCTGAC--CTGATTGACGAAAAG-ATCCTAGTGATG--TTCGAATCTA-TGAACTCTTCATTGGACA-ATTTCAATGCGAGG-TTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATT-CTGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAACAATT-TTCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaacaggcgacaatgtacacaactctaccggtgtgaacggtcaaaacaaggacgtgttcagacaacttctgaatcaagaaactatcatcaggatgaacttggtacaaaatgtccacgcactcatgaaagacatgttgactctgaatcaaaaccttgctgtggccgaacagaaaatttctgtattgaaaacagaggtagaagaattgaaaacagaaaacc
gi|9 : taaA-TCAGCATCCTAACA-GCTGTATCCTTTCATAA-AT-T-GGCTTTACATGATGTTT-G-TATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAAGGGAAT-CCTTACA-CT-GATGACCGTCGTCATCGTCAAAACCGCGGCCATC-TCTCTCCTAACAGAC-GACAATTTAAACAACTCTACAAAACAAGATCTCGTCGGTGTGAA--TGGTCA-AAATGTAGACGTGTTCAGACAGCTACTGAATCAAGAAACTATCATCAGAA-TGAAC-CTGGTAA--AAAATGT-C-t
gi|3 : CATGA-ATCT-GATTGTACTTGATATTTTGGTACAAATACTGCGCTTTGT-CTCACGT-TAAGCAAGATCTGATTTGCCAGGATGAA-TG-TGGT-TGGGTACCTAACA-CT-GATGTTGGTCGTCATCATCAGATCGGCGGCTGTC-TCTCTCCTAACAGAC-GACAATGCACACAACTCTACGAAACAAGATCTCGTTGGAGTGGA--TGGTCG-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGAA-TGAAC-TTGGTCA--AAAATGTCC-ACACCCTG-ATGAAA---GACATGTTG-AC-CCTAAAGGA-AAA-TCTCGCTATGGCCG-AACGGAAAA-TTTCTGTAC-TGACAAC--GGAAGTCC--AGGAATT--AAAACTTGAAAACCAAG--T-GTTGAAAA-AGGAGAGTGTA---GTAAAAAGTAGACG-CCTTG-CAGAAATGGAA-CGAAACCTTACCCA---AATTTCTGAAGATCAC-AAAGCGTTCCAAAGGAATAGTGAT-TTTGATCGGAAAGCATTTGAACTGAATGTTTCAGGCG-TACTGTCAGACATTAAA--ATTGAGGTTCGGTA-TTTGTCTATAA-CCTT-GCTG-GACTTGAACACACATACTCGT-CAAATT-GAAAAT--GACATTCC-TAAC--ATCATTGACCAAAAGAACC-TAGCGATG--TTTGCGTCC-ATGAACTCTTCATTGGACG-ATTTCAATGCGACG-TTAATGGCCACAGACAGCAAAATTTCAACTAGAGTTTCTGCTCTCGAAAAATCTCATG-GCGGAGTTCTGTCc
gi|6 : TCCTAACAGGC-GACAATGTACACAACTCTAC---------------CGGTGTGAA--CGGTCA-AAACAAGGACGTGTTCAGACAACTTCTGAATCAAGAAACTATCATCAGGA-TGAACTT-GGT-ACAAAA-TGT-CCACGCACTC-ATGAAA---GACATGTTG-AC-TCTGAA-TCAAAA-CCTTGCTGTGGCCG-AACAGAAAA-TTTCTGTAT-TGA-AAAC-AGAGGTA-G-AAGAA-TTGAAAAC-AGAAAA
gi|16 : ataccacatattttcgctctctaatctagaagaacactctcttagttgagtggaaaatttgacgtataatcgtaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-T-GAAAGT--GACATTCC-TGAC--ATGATTGACCATAAA-ATTCTAGTGATG--TTCAAATCT-ATGAACTCTTCATTGGAAA-ATTTCAATGcc
gi|10 : ACAT-CT-TAACGAATGATTGACCA-AAG-ATC-TAGTTATG--TTCGA-TCTA-TGAACTCTTCATTGGGAA-ATTTCAATGCAAGGGTTAATG-ATACAGGAAACAA--TTTCAGCTCAAGTTTCGAAC-TCAAGAATTCACATTTCAGG--TTTTGTCAACTGTCACTAGTAAATATCCCTACTACAGTACG-TTACGAGCAATTCTAACTA
gi|5 : gttcaaaaagGTTTCGAACCTCAAGAATTCACATT-CTGGAATTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ATGTTTATCAGCAATT-TAACTAAtta
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTCGAAAATTCATAATCTCAAGAGATAATTGAAATGCAAGTATAACTAAGTAGCACCTGGCCTGTTTGTAACAAGATAACGATGTATCATTGCAATATTTTGTTGAATAATCTTTAAAAGATCTGAATAAT
Unaligned ( gi|13 ): ATAATACTTACGAAAATAAATTCATCAGATAATGAACTGCAACACTTCATATTGCTCTTCTCGTTAAAAATTTCTATTCCTAAAATGGTATCTACATTTTCAAGGTTACGTGAACATTACAGT
Unaligned ( gi|14 ): TACATTTATTGTTCTCTTGATAAGACGTTCTATCTTTTTTCAAGATTTCGTAAACACAACAGTGGGCATTCTGAAGACTGAACTGAAGGACTCAAAGATTGAACAGCT
Unaligned ( gi|15 ): CATAGACTAGTTGCACTTGATATTCTGGTACAAATACTGCGCTTTTTTCAAGTTCATCATAATCCGATTTGCCAGGATGCATGTGG
Unaligned ( gi|17 ): ACGGAAGTCCAGGAATTAAAACTTGAAAACCGCGTATTGAAAAATG
Alignments
lowQualScore : 1 11111 1111 2 111 1 11 11 2222 33333333 1 1 33333333 11 2 11 11 22 1 2 1 111 111 2222 333 1 1 1 2 11 11 11 22 1 11 2 1 111 1
lowQualScore : 22 0 3 8 88888 1 2 6 1 2 5 1 2 3 0 1 6 3 99 1 6 6 9999 5 5 2222 5 5 0 5 5 6 6 6 3 1 6 5 7 2 999 6 7 6 3 6 777 3 6 8 1 1 8 8 99 3 8 6 8 3 0 11 6 8 8 11 1 0 3333 0 55 1 8 00000000 3 0 0 33333333 22 55 7 3 1 44 7 11 88 00 5 0 1 8 1 1 6 2 1 1 0 444 1 1 7 777 1 8888 1 000 5 3 0 3 0 0 11 8 88 11 0 66 11 6 11 1 8 0 2 33 0 2 3 1 0 0 777 3 0
lowQualScore : .. . . . ..... . . . . . . . . . . . . . .. . . . .... . . .... . . . . . . . . . . . . . . ... . . . . . ... . . . . . . . .. . . . . . . .. . . . .. . . .... . .. . . ........ . . . ........ .. .. . . . .. . .. .. .. . . . . . . . . . . . ... . . . ... . .... . ... . . . . . . .. . .. .. . .. .. . .. . . . . .. . . . . . . ... . .
lowQualScore : 44 6 8 0 00000 0 5 7 0 1 7 1 1 9 6 0 7 6 00 0 7 7 5555 7 7 4444 7 7 1 7 7 7 7 7 3 0 7 7 1 5 888 7 8 7 7 7 000 2 7 0 0 4 0 0 22 2 0 0 0 8 8 00 4 0 0 00 0 8 8888 8 44 4 0 22222222 2 0 0 00000000 22 22 0 3 0 33 3 77 77 00 3 7 0 7 0 0 7 0 0 0 7 777 0 0 3 333 0 0000 0 000 0 3 7 3 7 0 00 0 88 00 8 44 00 8 22 0 0 0 5 22 0 0 2 4 8 0 555 2 0
consensus : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCA-GGATGAAC-TTGG-TACAAAAATGTCCACGCCC-TGATGAAAGACA-T-GTTGACTCCTGAA-TCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GT-ACTTGTCGAT-AACCTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATT-CCTGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAAC-AAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
Reference ( family-6063 ) : TTTGCTGAATAATCTTTNAAAAGCTCTATA-CGATGAN----GTCACNTTGATGTTATCGCTATACCACACATT-TTAGCTCTCCGATCTACAAGAA-CACTCTCTTAGTGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTAACA-NCTGTATCCTTTCATNA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTNAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCA-GGATGAACTTTGG-TACAAAAATGTCCACGCCC-TNATGAAAGACA-T-GTTGACTCCTGAA-TC-AAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ANAGAGGTACG-AAGAATTGAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACGTCTTTGCCAGAAATGNAA-NGAAACNTCACCCAC-GAATTTCTGAAGATNACAAAAGNGTTCCGAAGGAATANTGATGTCGGATCGGAAAGCATTTGAANTGAATGTNTCACGCGCTACTGNCNGACATCAAACGATTGAGGTNCGGTAACTTGTCNATAAACCTTGGCTG-GACCTGAACACACACACTCGT-CGAA-TGAAAGT--GA-CATT-CCTGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAATCTAATGAACTCTTCATTGGANA-ATTTCAATGCGA-GGTTAATGGATACAGGAAAC-AAA-TTTCAGCTCGAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|1 : TTTGCTGAATAATCTTAAAAAAGCTCTATA-CGATGAG----GTCACTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTACAAGAG-CACCCTCTTAGAGGAGGGGTACATTTGTCGTATAATCACAA-TCATCATCCTACCA-TTTGTATCCTTTCATGA-AT-T-GTCCCTCCTTGGTGTT-T-GGTATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GCGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGAC-GACACTGTACACAACTTTACAAAACAAAACATCGTCGGTGTGGA--TGGTCATAAACGAGGACGTGTTCAGACAACT-CTGAATCAGAATACTATCATCA-GGATGAACTTTGGTTACCAAACTGT-CACGCAC-TCATGAAAAGAA-T-GTGAACTTCTGAA-TC-AAACCTTGCTGTGGCCG-AACAG-AAATTTCTG--TATTG-A-A--AAAGAGGTACGTAAGAAT--GAAACAG-AAAATAACG-GCG-GTTG-AAA-AGGAGAA-GTAGAGGTTCAAAGAAGACATCTTTGCCAGAAATGCAAGAGAAATATCGATCACAGAAGTTCTGAAAATAACGGAAGAGTTCCGAAAGAATATTGATGTCGGATCGGAAGACATTTGAGATCAATGTATCACACACTACTGGCCGACATCAAACGGTTGAAGTGC-GT--CTTGTCGGT--ACTTTGGCTGAGACCTAAAACCACACACTCGTGCAAA-TGAAAGTTGAA-CATT-CCTGAC--ATGATTGACCAGAAGAT-TTAGTGATGATTTCGAGTCTAATGAACTGTTCATTGGAAATATTTCAATGCAA-GGTTAATGGATACAGGAAAC-AAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCAGGAGTTTTGTCAACTGTCACTGGTAAATAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|10 : AAAAA--GA-CAT--CTTAACGAATGATTGACCAAA-GATC-TAGTTATG--TTCGA-TCTA-TGAACTCTTCATTGGGAA-ATTTCAATGCAAGGGTTAAT-GATACAGGAAAC--AA-TTTCAGCTCAAGTTTCGAA-CTCAAGAATTCACATTTCAG-GTTTTGTCAACTGTCACTAGTAAATATCCCTACTACAGTACG-TTACGAGCAATTCTAACTA
gi|11 : gttcGTTGAATAATCTTTAAAA-----TATT-TGAAGAACAGTGTCACACTGATGTTTTTATCATACCACACATT-TTCGCTCTCTAATCTACAAGAA-CACTCCCTTAGTGGAGGGGAAAAATTAACGTATAATCtta
gi|15 : ACTTGATATTCT-GGTACAAATACTGC-GCTTTT-TTCAAGT-TCATCATAATCCGATTTGCCAGGATGCA-TG-Tnatctgtaatc
gi|16 : catagactagttgc-TGAAAGT--GA-CATT-CCTGAC--ATGATTGACCATAAAATTCTAGTGATG--TTCAAATCT-ATGAACTCTTCATTGGAAA-ATTTCAATGgg
gi|2 : ATCTACAAGAA-CACTTTCTTAGTGGAGGGGAAAAATTAACGTATAATCATAA-TCATCATCCTAACA-GCTGCATCCTTTCATTA-AT-T-TTCCTTACTTGATGTT-T-GGTATAAATACAGC-------------GG-TCAGTGTAATGCGACTTGCCAACATGGA-TG-TCAC-GGGAATCCTTACA-CT-GCTGGTCGTCGTCATCGTGAAAACCG--GCCGTCCTCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACTTGGACGTGTTCAGACATTTTCTGAATCAAGAAACTATCATCAGGGGTGAAC-TTGG-TAC-AAAATGTCCACGCCCTTGATGAAAGATA-T-GTTGACTCTT-AA-TCAAAACCTTGCTGTGTCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAG-GGTA-G-AAGAATTAAAAACTG-AAACCAA-GTGCT-G--A-AAA-AGGAGA--GTA-CAGTTCAAAG-AGACATC-TTG-CAGAAATGCAA-AG-AATATCA--CAC-GAA-TTCTGAAAATAAC-AAAGAGTTCCGAAGAAATATTGATGTCGGATCGGAAA-CATTTGAAATGAATGTATCACACAC-ATTGGCCGACATC-AACG-TTGAGGTGC-GTAACTTGTCGATAA--CTTTGCTG-GACCTAAACACACACATTCGT-CGAATTGAAAGT--GATCATTCCCTGAC--CTGATTGACGAAAAGATCCTAGTGATG--TTCGAATCT-ATGAACTCTTCATTGGACA-ATTTCAATGCGA-GGTTAATGGATACAGGAAAC-AAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCTGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAACAATT-TTCCTAA
gi|3 : taCATGA-ATCT-GATTGTACTTGATATT-TTGGTACAAATACTGCGCTTTGT-CTCACGT-TAAGCAAGATCTGATTTGCCAGGATGAA-TG-TGGTTGGGTA-CCTAACA-CT-GATGTTGGTCGTCATCATCAGATCGGCGGCTGTC-TCTCTCCTAACAGAC-GACAATGCACACAACTCTACGAAACAAGATCTCGTTGGAGTGGA--TGGTCG-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCA-GAATGAAC-TTGG-T-CAAAAATGTCCACACCC-TGATGAAAGACA-T-GTTGAC-CCTAAAGGA-AAATCTCGCTATGGCCG-AACGGAAAATTTCTG--TACTG-ACA--ACGGAAGT-CC-AGGAATTAAAACTTG-AAAACCA-A-GT--GTTGAAAA-AGGAGAGTGTA---GTAAAAAGTAGACG-CCTTG-CAGAAATGGAA-CGAAACCTTACCCA---AATTTCTGAAGATCAC-AAAGCGTTCCAAAGGAATAGTGAT-TTTGATCGGAAAGCATTTGAACTGAATGTTTCAGGCG-TACTGTCAGACATTAAA--ATTGAGGTTCGGT-ATTTGTCTAT-AACCTT-GCTG-GACTTGAACACACATACTCGT-CAAATTGAAAAT--GA-CATT-CCTAAC--ATCATTGACCAAAAGAACCTAGCGATG--TTTGCGTCC-ATGAACTCTTCATTGGACG-ATTTCAATGCGA-CGTTAATGGCCACAGACAGCAAAA-TTTCAACTAGAGTTTCTGCTCTCGAAAAATCTCATGGCGGAGTTCTGTCt
gi|4 : TTTGCTGAATAATCTTTAAAAAGCTCTATAACGATGAG----GTCACTTTGATGTTATCGCTATATCACACATTGTTAGCTCT-CGTTCTACAAGAAGCACCCTCTTAGAGGAGGGG--TACTTGTCGTATAATCACAATTCATCAT-CTACCATTTTGTATCCTTTCATGACAT-T-GT-CCTCCTTGGTGTT-T-GGTAT-AAT-CAG----ATGTCCTCACGGTTCAGTGT-ATACGAC-TGCC-ACATGCATCGCTCAC-GCGAATCC-TACATCTGGATAGGCGTCGTCTTCG--AAAA---CGGCCGTC-TCTCTCCTAACAGACAGACACTGTACA-AA-TTTAC--AACAAAACATCGTCGGTGTGGATTTGGTCA-AAATGTGAACGTGTTCAGAC-ACTACTG-ATCAAGAAACTAT-ATCA-GGA-GAAC-TTGG-T-C-AAAATGT-CACGTCC-TGATGGGAGATAGTAGTTGACACTCGAA-TC-AAAACATA-TGTGGCCGCAACAGGG---TTCTGTTTA-TG-A-AAGACAGAGGTAC--AAG-ATTAAAAACTGAAAAACA----GCATGTTG-AAACAGGAGA--GTA-A-GTTCAAA-AAGACATCT
gi|5 : tGTTTCGAACCTCAAGAATTCACATTCTGGAATTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ATGTTTATCAGCAATT-TAACTAA
gi|6 : ATACCACATATT-TTCGCTCTCTAATCTAGAAGAA-CACTCTCTTAGTTGAGTGGAAAATTTGACGTATAATCGTAA-TCttagggacatacgatgtcgatcactgcacgttatctttgccttcatttttaacaaattcagtgtaggtttgagtttgaacgatagaacaatttgcattcacataaagactgcgataatacatacgaaaataaattcatttttaatatacatcaatctatgaacaacagcgcttcatgctgtggatgcgcttctgtatttccacgttaaaaatttatattcataaaactatttcctcattttcaaggttacgtgaacattactgttgacagcctgaaggaggaactgaaaaactcgcagattgaacagctgaagttatcatctgccgtgacctctctagagatgttccgaacaaatgtgaccaataacaaaagtggtacgtatcttctggtttctaatttta
gi|6 : TCCTAACAGGC-GACAATGTACACAACTCTAC---------------CGGTGTGAA--CGGTCA-AAACAAGGACGTGTTCAGACAACTTCTGAATCAAGAAACTATCATCA-GGATGAACTT-GG-TACAAAA-TGTCCACGCAC-TCATGAAAGACA-T-GTTGACT-CTGAA-TCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TATTGAA-A--ACAGAGGTA-G-AAGAATTGAAAACAG-AAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaacaggcgacaatgtacacaactctaccggtgtgaacggtcaaaacaaggacgtgttcagacaacttctgaatcaagaaactatcatcaggatgaacttggtacaaaatgtccacgcactcatgaaagacatgttgactctgaatcaaaaccttgctgtggccgaacagaaaatttctgtattgaaaacagaggtagaagaattgaaaacagaaaacc
gi|7 : ataccacatattttcgctctctaatctagaagaacactctcttagttgagtggaaaatttgacgtataatcgtaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGCTTAATAATCTTACAAAACCTTT-TA-CAATGAC----GTTATTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTATAAGAG-CACCCTCTTAGAGGAGGGGAAAATTTGTCGTATAATCACAA-TCATCATCCAAGCA-TCTGTATCCTTTCATTA-AT-TCGT-CCTACTTAATGTT-T-GGTATAAATACAGC-CCTTGC-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGATTCCTTACA-CT-GATGACCGTCGTCATCGTAAAAACTGCTGCCATC-TCTCTCATAACAGGT-GACAATGTACACAACTCTACAAc
gi|8 : tTTTGCTGAATAATCTTTCAAA-GATCTGAA-TAATAAC----GTAACAGTGATGTTATCGCTGTACAACACATT-TCAGCAATTTAATCTACAAGAA-AACACTCTTAGTGGAGGGGGAAATGTGTTGAATAATC
gi|9 : aattgaaagaaatatctgttttcttcaaaaataaaacatttaatgaaaaacactgacatttcaattttaagtattttatttttcgaaaattcataatctcaagatataattcaaatgtaagtgtaactaagtagcacgccatctgtttgtaacaagatagcgatgtatcgttgcaatatA-TCAGCATCCTAACA-GCTGTATCCTTTCATAA-AT-T-GGCTTTACATGATGTT-T-G-TATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAA-GGGAATCCTTACA-CT-GATGACCGTCGTCATCGTCAAAACCGCGGCCATC-TCTCTCCTAACAGAC-GACAATTTAAACAACTCTACAAAACAAGATCTCGTCGGTGTGAA--TGGTCA-AAATGTAGACGTGTTCAGACAGCTACTGAATCAAGAAACTATCATCA-GAATGAAC-CTGG-TA-AAAAATGTCC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTCGAAAATTCATAATCTCAAGAGATAATTGAAATGCAAGTATAACTAAGTAGCACCTGGCCTGTTTGTAACAAGATAACGATGTATCATTGCAATATTTTGTTGAATAATCTTTAAAAGATCTGAATAAT
Unaligned ( gi|13 ): ATAATACTTACGAAAATAAATTCATCAGATAATGAACTGCAACACTTCATATTGCTCTTCTCGTTAAAAATTTCTATTCCTAAAATGGTATCTACATTTTCAAGGTTACGTGAACATTACAGT
Unaligned ( gi|14 ): TACATTTATTGTTCTCTTGATAAGACGTTCTATCTTTTTTCAAGATTTCGTAAACACAACAGTGGGCATTCTGAAGACTGAACTGAAGGACTCAAAGATTGAACAGCT
Unaligned ( gi|17 ): ACGGAAGTCCAGGAATTAAAACTTGAAAACCGCGTATTGAAAAATG
Alignments
lowQualScore : 1 11111 1111 111 11 11 2222 33333333 1 1 33333333 1 1 33333333333 11 1 111 2222 1 22 1 1 1 11 11 11 22 1 1 111 1
lowQualScore : 22 0 3 8 88888 1 1 6 1 1 5 0 1 3 0 1 6 1 88 1 6 6 9999 5 5 2222 5 5 1 0 5 5 6 6 6 2 1 6 5 7 2 999 6 7 6 6 6 777 3 6 8 1 8 8 99 3 0 3 8 3 0 11 6 8 8 11 0 3333 0 0 1 8 00000000 3 0 0 33333333 2 3 3 7 3 3 7 00000000000 44 6 2 0 444 4444 3 00 7 0 3 3 3 0 3 11 8 0 8 11 0 66 11 6 11 0 8 0 2 66 3 1 0 0 777 3 0
lowQualScore : .. . . . ..... . . . . . . . . . . . . . .. . . . .... . . .... . . . . . . . . . . . . . . . ... . . . . . ... . . . . . . .. . . . . . . .. . . . .. . .... . . . . ........ . . . ........ . . . . . . . ........... .. . . . ... .... . .. . . . . . . . .. . . . .. . .. .. . .. . . . . .. . . . . ... . .
lowQualScore : 00 6 8 0 00000 4 0 7 0 0 7 4 0 9 6 0 7 0 66 0 7 7 5555 7 7 4444 7 7 4 1 7 7 7 7 7 5 0 7 7 1 5 888 7 8 7 7 7 000 2 7 0 4 0 0 22 2 8 8 0 8 8 00 4 0 0 00 8 8888 8 8 4 0 22222222 2 0 0 00000000 5 2 2 3 3 3 3 77777777777 00 7 0 7 777 3333 3 77 3 7 3 3 3 7 2 00 0 8 0 00 8 44 00 4 22 6 0 0 5 88 2 4 8 0 555 2 0
consensus : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TACAAAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACTCCTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
Reference ( family-6063 ) : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TACAAAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACTCCTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACCTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|1 : TTTGCTGAATAATCTTAAAAAAGCTCTATA-CGATGAG----GTCACTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTACAAGAG-CACCCTCTTAGAGGAGGGGTACATTTGTCGTATAATCACAA-TCATCATCCTACCA-TTTGTATCCTTTCATGA-AT-T-GTCCCTCCTTGGTGTT-T-GGTATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GCGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGAC-GACACTGTACACAACTTTACAAAACAAAACATCGTCGGTGTGGA--TGGTCATAAACGAGGACGTGTTCAGACAACT-CTGAATCAGAATACTATCATCAGGA-TGAACTTTGGTTACCAAACTGT-CACGCACT-CATGAAAAGAA-T-GTGAACTTCTGAATC-AAACCTTGCTGTGGCCG-AACAG-AAATTTCTG--TATTG-A-A--AAAGAGGTACGTAAGAAT--GAAACAG-AAAATAACG-GCG-GTTG-AAA-AGGAGAA-GTAGAGGTTCAAAGAAGACATCTTTGCCAGAAATGCAAGAGAAATATCGATCACAGAAGTTCTGAAAATAACGGAAGAGTTCCGAAAGAATATTGATGTCGGATCGGAAGACATTTGAGATCAATGTATCACACACTACTGGCCGACATCAAACGGTTGAAGTGC-GT--CTTGTCGGT-ACTTTGGCTGAGACCTAAAACCACACACTCGTGCAAA-TGAAAGTTGAA-CATTCC-TGAC--ATGATTGACCAGAAGAT-TTAGTGATGATTTCGAGTCTAATGAACTGTTCATTGGAAATATTTCAATGCAA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCAGGAGTTTTGTCAACTGTCACTGGTAAATAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|10 : TTCAAAAA--GA-CAT-CT-TAACGAATGATTGACCAAA-GATC-TAGTTATG--TTCGA-TCTA-TGAACTCTTCATTGGGAA-ATTTCAATGCAAGGGTTAAT-GATACAGGAAACAA--TTTCAGCTCAAGTTTCGAA-CTCAAGAATTCACATTTCAG-GTTTTGTCAACTGTCACTAGTAAATATCCCTACTACAGTACG-TTACGAGCAATTCTAACTA
gi|11 : gGTTGAATAATCTTTAAAA-----TATT-TGAAGAACAGTGTCACACTGATGTTTTTATCATACCACACATT-TTCGCTCTCTAATCTACAAGAA-CACTCCCTTAGTGGAGGGGAAAAATTAACGTATAATCtta
gi|15 : ACTTGATATTCT-GGTACAAATACTGC-GCTTTT-TTCAAGT-TCATCATAATCCGATTTGCCAGGATGCA-TG-Tnatctgtaatc
gi|16 : catagactagttgcTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCATAAAATTCTAGTGATG--TTCAAATCT-ATGAACTCTTCATTGGAAA-ATTTCAATGgg
gi|2 : TCTACAAGAA-CACTTTCTTAGTGGAGGGGAAAAATTAACGTATAATCATAA-TCATCATCCTAACA-GCTGCATCCTTTCATTA-AT-T-TTCCTTACTTGATGTT-T-GGTATAAATACAGC-------------GG-TCAGTGTAATGCGACTTGCCAACATGGA-TG-TCAC-GGGAATCCTTACA-CT-GCTGGTCGTCGTCATCGTGAAAACCG--GCCGTCCTCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACTTGGACGTGTTCAGACATTTTCTGAATCAAGAAACTATCATCAGGGGTGAAC-TTGG-TACAAAA-TGTCCACGCCCTTGATGAAAGATA-T-GTTGACTCTT-AATCAAAACCTTGCTGTGTCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAG-GGTA-G-AAGAATTAAAAACTG-AAACCAA-GTGCT-G--A-AAA-AGGAGAG--TA-CAGTTCAAAGA-GACATCTT-G-CAGAAATGCAA-AGAA-TATCA-C-AC-GAA-TTCTGAAAATAAC-AAAGAGTTCCGAAGAAATATTGATGTCGGATCGGAAA-CATTTGAAATGAATGTATCACACAC-ATTGGCCGACATCAA-CG-TTGAGGTGC-GTAACTTGTCGATAACTTT-GCTG-GACCTAAACACACACATTCGT-CGAATTGAAAGT--GATCATTCCCTGAC--CTGATTGACGAAAAGATCCTAGTGATG--TTCGAATCTA-TGAACTCTTCATTGGACA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCTGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAACAATT-TTCCTAA
gi|3 : taaCATGA-ATCT-GATTGTACTTGATATT-TTGGTACAAATACTGCGCTTTGT-CTCACGT-TAAGCAAGATCTGATTTGCCAGGATGAA-TG-TGGTTGGGTA-CCTAACA-CT-GATGTTGGTCGTCATCATCAGATCGGCGGCTGTC-TCTCTCCTAACAGAC-GACAATGCACACAACTCTACGAAACAAGATCTCGTTGGAGTGGA--TGGTCG-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGAA-TGAAC-TTGG-T-CAAAAATGTCCACACCCT-GATGAAAGACA-T-GTTGAC-CCTAAAGGAAAATCTCGCTATGGCCG-AACGGAAAATTTCTG--TACTG-ACA--ACGGAAGT-CC-AGGAATTAAAACTTG-AAAACCA-A-GT--GTTGAAAA-AGGAGAGTGTA---GTAAAAAGTAGACG-CCTTG-CAGAAATGGAA-CGAAACCTTA-CC-C-AAATTTCTGAAGATCAC-AAAGCGTTCCAAAGGAATAGTGAT-TTTGATCGGAAAGCATTTGAACTGAATGTTTCAGGCG-TACTGTCAGACATTAAA--ATTGAGGTTCGGTA-TTTGTCTATAACCTT-GCTG-GACTTGAACACACATACTCGT-CAAATTGAAAAT--GA-CATTCC-TAAC--ATCATTGACCAAAAGAACCTAGCGATG--TTTGCGTCC-ATGAACTCTTCATTGGACG-ATTTCAATGCGA-CGTTAATGGCCACAGACAGCAAAATTTCAACTAGAGTTTCTGCTCTCGAAAAATCTCATGGCGGAGTTCTGTCt
gi|4 : TTTGCTGAATAATCTTTAAAAAGCTCTATAACGATGAG----GTCACTTTGATGTTATCGCTATATCACACATTGTTAGCTCT-CGTTCTACAAGAAGCACCCTCTTAGAGGAGGGG--TACTTGTCGTATAATCACAATTCATCAT-CTACCATTTTGTATCCTTTCATGACAT-T-GT-CCTCCTTGGTGTT-T-GGTAT-AAT-CAG----ATGTCCTCACGGTTCAGTGT-ATACGAC-TGCC-ACATGCATCGCTCAC-GCGAATCC-TACATCTGGATAGGCGTCGTCTTCG--AAAA---CGGCCGTC-TCTCTCCTAACAGACAGACACTGTACA-AA-TTTAC--AACAAAACATCGTCGGTGTGGATTTGGTCA-AAATGTGAACGTGTTCAGAC-ACTACTG-ATCAAGAAACTAT-ATCAGGA--GAAC-TTGG-T-C-AAAATGT-CACGTCCT-GATGGGAGATAGTAGTTGACACTCGAATCAAAACAT--ATGTGGCCGCAACAGGG---TTCTGTTTA-TG-A-AAGACAGAGGTAC--AAG-ATTAAAAACTGAAAAACA----GCATGTTG-AAACAGGAGA--GTA-A-GTTCAAA-AAGACATCT
gi|5 : tGTTTCGAACCTCAAGAATTCACATTCTGGAATTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ATGTTTATCAGCAATT-TAACTAA
gi|6 : ATACCACATATT-TTCGCTCTCTAATCTAGAAGAA-CACTCTCTTAGTTGAGTGGAAAATTTGACGTATAATCGTAA-TCttagggacatacgatgtcgatcactgcacgttatctttgccttcatttttaacaaattcagtgtaggtttgagtttgaacgatagaacaatttgcattcacataaagactgcgataatacatacgaaaataaattcatttttaatatacatcaatctatgaacaacagcgcttcatgctgtggatgcgcttctgtatttccacgttaaaaatttatattcataaaactatttcctcattttcaaggttacgtgaacattactgttgacagcctgaaggaggaactgaaaaactcgcagattgaacagctgaagttatcatctgccgtgacctctctagagatgttccgaacaaatgtgaccaataacaaaagtggtacgtatcttctggtttctaatttta
gi|6 : TCCTAACAGGC-GACAATGTACACAACTCTAC---------------CGGTGTGAA--CGGTCA-AAACAAGGACGTGTTCAGACAACTTCTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TAC-AAAATGTCCACGCACT-CATGAAAGACA-T-GTTGACT-CTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TATTGAA-A--ACAGAGGTA-G-AAGAATTGAAAACAG-AAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaacaggcgacaatgtacacaactctaccggtgtgaacggtcaaaacaaggacgtgttcagacaacttctgaatcaagaaactatcatcaggatgaacttggtacaaaatgtccacgcactcatgaaagacatgttgactctgaatcaaaaccttgctgtggccgaacagaaaatttctgtattgaaaacagaggtagaagaattgaaaacagaaaacc
gi|7 : ataccacatattttcgctctctaatctagaagaacactctcttagttgagtggaaaatttgacgtataatcgtaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGCTTAATAATCTTACAAAACCTTT-TA-CAATGAC----GTTATTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTATAAGAG-CACCCTCTTAGAGGAGGGGAAAATTTGTCGTATAATCACAA-TCATCATCCAAGCA-TCTGTATCCTTTCATTA-AT-TCGT-CCTACTTAATGTT-T-GGTATAAATACAGC-CCTTGC-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGATTCCTTACA-CT-GATGACCGTCGTCATCGTAAAAACTGCTGCCATC-TCTCTCATAACAGGT-GACAATGTACACAACTCTACAAc
gi|8 : tTTTGCTGAATAATCTTTCAAA-GATCTGAA-TAATAAC----GTAACAGTGATGTTATCGCTGTACAACACATT-TCAGCAATTTAATCTACAAGAA-AACACTCTTAGTGGAGGGGGAAATGTGTTGAATAATC
gi|9 : aattgaaagaaatatctgttttcttcaaaaataaaacatttaatgaaaaacactgacatttcaattttaagtattttatttttcgaaaattcataatctcaagatataattcaaatgtaagtgtaactaagtagcacgccatctgtttgtaacaagatagcgatgtatcgttgcaatatA-TCAGCATCCTAACA-GCTGTATCCTTTCATAA-AT-T-GGCTTTACATGATGTT-T-G-TATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAA-GGGAATCCTTACA-CT-GATGACCGTCGTCATCGTCAAAACCGCGGCCATC-TCTCTCCTAACAGAC-GACAATTTAAACAACTCTACAAAACAAGATCTCGTCGGTGTGAA--TGGTCA-AAATGTAGACGTGTTCAGACAGCTACTGAATCAAGAAACTATCATCAGAA-TGAAC-CTGG-TA-AAAAATGTCC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTCGAAAATTCATAATCTCAAGAGATAATTGAAATGCAAGTATAACTAAGTAGCACCTGGCCTGTTTGTAACAAGATAACGATGTATCATTGCAATATTTTGTTGAATAATCTTTAAAAGATCTGAATAAT
Unaligned ( gi|13 ): ATAATACTTACGAAAATAAATTCATCAGATAATGAACTGCAACACTTCATATTGCTCTTCTCGTTAAAAATTTCTATTCCTAAAATGGTATCTACATTTTCAAGGTTACGTGAACATTACAGT
Unaligned ( gi|14 ): TACATTTATTGTTCTCTTGATAAGACGTTCTATCTTTTTTCAAGATTTCGTAAACACAACAGTGGGCATTCTGAAGACTGAACTGAAGGACTCAAAGATTGAACAGCT
Unaligned ( gi|17 ): ACGGAAGTCCAGGAATTAAAACTTGAAAACCGCGTATTGAAAAATG
Alignments
lowQualScore : 1 11111 1111 111 11 11 2222 33333333 1 1 33333333 1 1 33333333333 11 1 111 2222 1 22 1 1 1 11 11 11 22 1 1 111 1
lowQualScore : 22 0 3 8 88888 1 1 6 1 1 5 0 1 3 0 1 6 1 88 1 6 6 9999 5 5 2222 5 5 1 0 5 5 6 6 6 2 1 6 5 7 2 999 6 7 6 6 6 777 3 6 8 1 8 8 99 3 0 3 8 3 0 11 6 8 8 11 0 3333 0 0 1 8 00000000 3 0 0 33333333 2 3 3 7 3 3 7 00000000000 44 6 2 0 444 4444 3 00 7 3 3 3 0 3 11 8 0 8 11 0 66 11 6 11 0 8 0 2 66 3 1 0 0 777 3 0
lowQualScore : .. . . . ..... . . . . . . . . . . . . . .. . . . .... . . .... . . . . . . . . . . . . . . . ... . . . . . ... . . . . . . .. . . . . . . .. . . . .. . .... . . . . ........ . . . ........ . . . . . . . ........... .. . . . ... .... . .. . . . . . . .. . . . .. . .. .. . .. . . . . .. . . . . ... . .
lowQualScore : 00 6 8 0 00000 4 0 7 0 0 7 4 0 9 6 0 7 0 66 0 7 7 5555 7 7 4444 7 7 4 1 7 7 7 7 7 5 0 7 7 1 5 888 7 8 7 7 7 000 2 7 0 4 0 0 22 2 8 8 0 8 8 00 4 0 0 00 8 8888 8 8 4 0 22222222 2 0 0 00000000 5 2 2 3 3 3 3 77777777777 00 7 0 7 777 3333 3 77 3 3 3 3 7 2 00 0 8 0 00 8 44 00 4 22 6 0 0 5 88 2 4 8 0 555 2 0
consensus : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TACAAAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACTCCTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
Reference ( family-6063 ) : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TACAAAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACTCCTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|1 : TTTGCTGAATAATCTTAAAAAAGCTCTATA-CGATGAG----GTCACTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTACAAGAG-CACCCTCTTAGAGGAGGGGTACATTTGTCGTATAATCACAA-TCATCATCCTACCA-TTTGTATCCTTTCATGA-AT-T-GTCCCTCCTTGGTGTT-T-GGTATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GCGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGAC-GACACTGTACACAACTTTACAAAACAAAACATCGTCGGTGTGGA--TGGTCATAAACGAGGACGTGTTCAGACAACT-CTGAATCAGAATACTATCATCAGGA-TGAACTTTGGTTACCAAACTGT-CACGCACT-CATGAAAAGAA-T-GTGAACTTCTGAATC-AAACCTTGCTGTGGCCG-AACAG-AAATTTCTG--TATTG-A-A--AAAGAGGTACGTAAGAAT--GAAACAG-AAAATAACG-GCG-GTTG-AAA-AGGAGAA-GTAGAGGTTCAAAGAAGACATCTTTGCCAGAAATGCAAGAGAAATATCGATCACAGAAGTTCTGAAAATAACGGAAGAGTTCCGAAAGAATATTGATGTCGGATCGGAAGACATTTGAGATCAATGTATCACACACTACTGGCCGACATCAAACGGTTGAAGTGC-GT--CTTGTCGGT-ACTTTGGCTGAGACCTAAAACCACACACTCGTGCAAA-TGAAAGTTGAA-CATTCC-TGAC--ATGATTGACCAGAAGAT-TTAGTGATGATTTCGAGTCTAATGAACTGTTCATTGGAAATATTTCAATGCAA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCAGGAGTTTTGTCAACTGTCACTGGTAAATAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|10 : TTCAAAAA--GA-CAT-CT-TAACGAATGATTGACCAAA-GATC-TAGTTATG--TTCGA-TCTA-TGAACTCTTCATTGGGAA-ATTTCAATGCAAGGGTTAAT-GATACAGGAAACAA--TTTCAGCTCAAGTTTCGAA-CTCAAGAATTCACATTTCAG-GTTTTGTCAACTGTCACTAGTAAATATCCCTACTACAGTACG-TTACGAGCAATTCTAACTA
gi|11 : gGTTGAATAATCTTTAAAA-----TATT-TGAAGAACAGTGTCACACTGATGTTTTTATCATACCACACATT-TTCGCTCTCTAATCTACAAGAA-CACTCCCTTAGTGGAGGGGAAAAATTAACGTATAATCtta
gi|15 : ACTTGATATTCT-GGTACAAATACTGC-GCTTTT-TTCAAGT-TCATCATAATCCGATTTGCCAGGATGCA-TG-Tnatctgtaatc
gi|16 : catagactagttgcTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCATAAAATTCTAGTGATG--TTCAAATCT-ATGAACTCTTCATTGGAAA-ATTTCAATGgg
gi|2 : TCTACAAGAA-CACTTTCTTAGTGGAGGGGAAAAATTAACGTATAATCATAA-TCATCATCCTAACA-GCTGCATCCTTTCATTA-AT-T-TTCCTTACTTGATGTT-T-GGTATAAATACAGC-------------GG-TCAGTGTAATGCGACTTGCCAACATGGA-TG-TCAC-GGGAATCCTTACA-CT-GCTGGTCGTCGTCATCGTGAAAACCG--GCCGTCCTCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACTTGGACGTGTTCAGACATTTTCTGAATCAAGAAACTATCATCAGGGGTGAAC-TTGG-TACAAAA-TGTCCACGCCCTTGATGAAAGATA-T-GTTGACTCTT-AATCAAAACCTTGCTGTGTCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAG-GGTA-G-AAGAATTAAAAACTG-AAACCAA-GTGCT-G--A-AAA-AGGAGAG--TA-CAGTTCAAAGA-GACATCTT-G-CAGAAATGCAA-AGAA-TATCA-C-AC-GAA-TTCTGAAAATAAC-AAAGAGTTCCGAAGAAATATTGATGTCGGATCGGAAA-CATTTGAAATGAATGTATCACACAC-ATTGGCCGACATCAA-CG-TTGAGGTGC-GTAACTTGTCGATAACTTT-GCTG-GACCTAAACACACACATTCGT-CGAATTGAAAGT--GATCATTCCCTGAC--CTGATTGACGAAAAGATCCTAGTGATG--TTCGAATCTA-TGAACTCTTCATTGGACA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCTGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAACAATT-TTCCTAA
gi|3 : taaCATGA-ATCT-GATTGTACTTGATATT-TTGGTACAAATACTGCGCTTTGT-CTCACGT-TAAGCAAGATCTGATTTGCCAGGATGAA-TG-TGGTTGGGTA-CCTAACA-CT-GATGTTGGTCGTCATCATCAGATCGGCGGCTGTC-TCTCTCCTAACAGAC-GACAATGCACACAACTCTACGAAACAAGATCTCGTTGGAGTGGA--TGGTCG-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGAA-TGAAC-TTGG-T-CAAAAATGTCCACACCCT-GATGAAAGACA-T-GTTGAC-CCTAAAGGAAAATCTCGCTATGGCCG-AACGGAAAATTTCTG--TACTG-ACA--ACGGAAGT-CC-AGGAATTAAAACTTG-AAAACCA-A-GT--GTTGAAAA-AGGAGAGTGTA---GTAAAAAGTAGACG-CCTTG-CAGAAATGGAA-CGAAACCTTA-CC-C-AAATTTCTGAAGATCAC-AAAGCGTTCCAAAGGAATAGTGAT-TTTGATCGGAAAGCATTTGAACTGAATGTTTCAGGCG-TACTGTCAGACATTAAA--ATTGAGGTTCGGTA-TTTGTCTATAACCTT-GCTG-GACTTGAACACACATACTCGT-CAAATTGAAAAT--GA-CATTCC-TAAC--ATCATTGACCAAAAGAACCTAGCGATG--TTTGCGTCC-ATGAACTCTTCATTGGACG-ATTTCAATGCGA-CGTTAATGGCCACAGACAGCAAAATTTCAACTAGAGTTTCTGCTCTCGAAAAATCTCATGGCGGAGTTCTGTCt
gi|4 : TTTGCTGAATAATCTTTAAAAAGCTCTATAACGATGAG----GTCACTTTGATGTTATCGCTATATCACACATTGTTAGCTCT-CGTTCTACAAGAAGCACCCTCTTAGAGGAGGGG--TACTTGTCGTATAATCACAATTCATCAT-CTACCATTTTGTATCCTTTCATGACAT-T-GT-CCTCCTTGGTGTT-T-GGTAT-AAT-CAG----ATGTCCTCACGGTTCAGTGT-ATACGAC-TGCC-ACATGCATCGCTCAC-GCGAATCC-TACATCTGGATAGGCGTCGTCTTCG--AAAA---CGGCCGTC-TCTCTCCTAACAGACAGACACTGTACA-AA-TTTAC--AACAAAACATCGTCGGTGTGGATTTGGTCA-AAATGTGAACGTGTTCAGAC-ACTACTG-ATCAAGAAACTAT-ATCAGGA--GAAC-TTGG-T-C-AAAATGT-CACGTCCT-GATGGGAGATAGTAGTTGACACTCGAATCAAAACAT--ATGTGGCCGCAACAGGG---TTCTGTTTA-TG-A-AAGACAGAGGTAC--AAG-ATTAAAAACTGAAAAACA----GCATGTTG-AAACAGGAGA--GTA-A-GTTCAAA-AAGACATCT
gi|5 : tGTTTCGAACCTCAAGAATTCACATTCTGGAATTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ATGTTTATCAGCAATT-TAACTAA
gi|6 : ATACCACATATT-TTCGCTCTCTAATCTAGAAGAA-CACTCTCTTAGTTGAGTGGAAAATTTGACGTATAATCGTAA-TCttagggacatacgatgtcgatcactgcacgttatctttgccttcatttttaacaaattcagtgtaggtttgagtttgaacgatagaacaatttgcattcacataaagactgcgataatacatacgaaaataaattcatttttaatatacatcaatctatgaacaacagcgcttcatgctgtggatgcgcttctgtatttccacgttaaaaatttatattcataaaactatttcctcattttcaaggttacgtgaacattactgttgacagcctgaaggaggaactgaaaaactcgcagattgaacagctgaagttatcatctgccgtgacctctctagagatgttccgaacaaatgtgaccaataacaaaagtggtacgtatcttctggtttctaatttta
gi|6 : TCCTAACAGGC-GACAATGTACACAACTCTAC---------------CGGTGTGAA--CGGTCA-AAACAAGGACGTGTTCAGACAACTTCTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TAC-AAAATGTCCACGCACT-CATGAAAGACA-T-GTTGACT-CTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TATTGAA-A--ACAGAGGTA-G-AAGAATTGAAAACAG-AAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaacaggcgacaatgtacacaactctaccggtgtgaacggtcaaaacaaggacgtgttcagacaacttctgaatcaagaaactatcatcaggatgaacttggtacaaaatgtccacgcactcatgaaagacatgttgactctgaatcaaaaccttgctgtggccgaacagaaaatttctgtattgaaaacagaggtagaagaattgaaaacagaaaacc
gi|7 : ataccacatattttcgctctctaatctagaagaacactctcttagttgagtggaaaatttgacgtataatcgtaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGCTTAATAATCTTACAAAACCTTT-TA-CAATGAC----GTTATTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTATAAGAG-CACCCTCTTAGAGGAGGGGAAAATTTGTCGTATAATCACAA-TCATCATCCAAGCA-TCTGTATCCTTTCATTA-AT-TCGT-CCTACTTAATGTT-T-GGTATAAATACAGC-CCTTGC-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGATTCCTTACA-CT-GATGACCGTCGTCATCGTAAAAACTGCTGCCATC-TCTCTCATAACAGGT-GACAATGTACACAACTCTACAAc
gi|8 : tTTTGCTGAATAATCTTTCAAA-GATCTGAA-TAATAAC----GTAACAGTGATGTTATCGCTGTACAACACATT-TCAGCAATTTAATCTACAAGAA-AACACTCTTAGTGGAGGGGGAAATGTGTTGAATAATC
gi|9 : aattgaaagaaatatctgttttcttcaaaaataaaacatttaatgaaaaacactgacatttcaattttaagtattttatttttcgaaaattcataatctcaagatataattcaaatgtaagtgtaactaagtagcacgccatctgtttgtaacaagatagcgatgtatcgttgcaatatA-TCAGCATCCTAACA-GCTGTATCCTTTCATAA-AT-T-GGCTTTACATGATGTT-T-G-TATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAA-GGGAATCCTTACA-CT-GATGACCGTCGTCATCGTCAAAACCGCGGCCATC-TCTCTCCTAACAGAC-GACAATTTAAACAACTCTACAAAACAAGATCTCGTCGGTGTGAA--TGGTCA-AAATGTAGACGTGTTCAGACAGCTACTGAATCAAGAAACTATCATCAGAA-TGAAC-CTGG-TA-AAAAATGTCC
blockSeqs : TA A A A ACAGT A C G C A G T A A T A TT T C C TTC C T GCTT C T C T C T T G G C C A A C TTT . T G . . ACA A C T T G A TC A T C A TT C A C AG AG T A AGTGCT T A C GTACA G A T T . . A ACCCAAAT A G G AC CG G AA A . . . T . T C GA TC . A A . G G AT C C C AGT T C
blockSeqs : TA A A . G T C . C T . T A A . C G G . . GAT . . GCT . . T . . . . . C G . . G C C . A . . . CA A C . C . . AC G C . A . C . . . CC T . AAGT T . . GTGTA G A T . . . . ACACGAA A . . GT AA . A A . . . T . . . . CC . A A . . G AA T T . . T .
blockSeqs : AC . G . C T C . C A . A A T . G T G . . CGT . . CCT . . C . . . . . A T . . A A T . A . . . AC A C . T . . C G T . G . T . . . AC T . GCAT . . . GTAA . . . T . . . . CC . G A . . . . C C . . . .
blockSeqs : TC . . . C A A . T T . T A A . A G T . . GGC . . CCA . . T . . . . . C C . . A C C . T . . . AA A C . C . . T . . . A . . . . . AG A . . . . . C . . A . . T
blockSeqs : A . . A . A G T . A . . GT . . A . . T . . . . . . . . . . . T . A . . . C . .
blockSeqs : . T . T . . . . . T . . . .
blockSeqCons : AA* C* AN** ** CC ** A*
originalCons : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TACAAAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACTCCTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTACG-AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTAATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
finalCons : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGG-TAA-AAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGACC-CTGAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTAN--AAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GTA-CTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATTCC-TGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCTA-TGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTCGAAAATTCATAATCTCAAGAGATAATTGAAATGCAAGTATAACTAAGTAGCACCTGGCCTGTTTGTAACAAGATAACGATGTATCATTGCAATATTTTGTTGAATAATCTTTAAAAGATCTGAATAAT
Unaligned ( gi|13 ): ATAATACTTACGAAAATAAATTCATCAGATAATGAACTGCAACACTTCATATTGCTCTTCTCGTTAAAAATTTCTATTCCTAAAATGGTATCTACATTTTCAAGGTTACGTGAACATTACAGT
Unaligned ( gi|14 ): TACATTTATTGTTCTCTTGATAAGACGTTCTATCTTTTTTCAAGATTTCGTAAACACAACAGTGGGCATTCTGAAGACTGAACTGAAGGACTCAAAGATTGAACAGCT
Unaligned ( gi|17 ): ACGGAAGTCCAGGAATTAAAACTTGAAAACCGCGTATTGAAAAATG
Alignments
lowQualScore : 1 11111 1111 1111 11 11 11 111 33333333 1 1 33333333 1 1 33333333333 11 1 111 22 1 22 1 1 1 11 11 11 1 1 111 1
lowQualScore : 22 0 3 8 88888 1 1 6 1 1 5 0 1 3 0 1 6 1 88 1 6 6 9999 5 5 2222 5 5 1 0 5 5 6 6 6 2 1 6 5 7 2 999 6 7 6 6 9999 6 8 1 8 8 22 8 0 3 8 3 0 11 6 8 8 11 0 222 0 0 1 8 00000000 3 0 0 33333333 2 3 3 7 3 3 7 00000000000 44 6 2 0 444 7 11 3 00 7 3 3 3 0 3 11 8 88 11 0 66 11 6 8 0 8 0 2 66 3 1 0 0 777 3 0
lowQualScore : .. . . . ..... . . . . . . . . . . . . . .. . . . .... . . .... . . . . . . . . . . . . . . . ... . . . . .... . . . . . .. . . . . . . .. . . . .. . ... . . . . ........ . . . ........ . . . . . . . ........... .. . . . ... . .. . .. . . . . . . .. . .. .. . .. .. . . . . . . .. . . . . ... . .
lowQualScore : 00 6 8 0 00000 4 0 7 0 0 7 4 0 9 6 0 7 0 66 0 7 7 5555 7 7 4444 7 7 4 1 7 7 7 7 7 5 0 7 7 1 5 888 7 8 7 7 7777 7 0 4 0 0 66 0 8 8 0 8 8 00 4 0 0 00 8 000 8 8 4 0 22222222 2 0 0 00000000 5 2 2 3 3 3 3 77777777777 00 7 0 7 777 3 77 3 77 3 3 3 3 7 2 00 0 88 00 8 44 00 4 0 6 0 0 5 88 2 4 8 0 555 2 0
consensus : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGGTAN--AAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGAC-TCT-GAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTA--NAAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAAC-GTTGAGGTGC-GT-ACTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATT-CCTGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCT-ATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
Reference ( family-6063 ) : TTTGCTGAATAATCTTTAAAAAGCTCTATA-CGATGAN----GTCACTTTGATGTTATCGCTATACNACACATT-TCAGCTCTCCGNTCTACAAGAA-CACCCTCTTAGNGGAGGGGAAAATTTGNCGTATAATCACAA-TCATCATCCTANCA-TCTGTATCCTTTCATGA-AT-T-GTCCCTACTTGATGTT-T-GGTATAAATACAGC-CCNTGT-CTCACGG-TCAGCGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGGTAA--AAAATGTCCACGCCCT-GATGAAAGACA-T-GTTGAC-CCT-GAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAGAGGTA--NAAGAATTAAAAACTG-AAAACAA-G-GCG-GTTG-AAA-AGGAGAG-GTA-AGGTTCAAAGAAGACATCTTTG-CAGAAATGCAA-AGAAATATCG-CCAC-GAA-TTCTGAAAATAAC-GAAGAGTTCCGAAGGAATATTGATGTCGGATCGGAAAGCATTTGAAATGAATGTATCACGCGCTACTGGCCGACATCAAACGGTTGAGGTGC-GT-ACTTGTCGATAACTTT-GCTG-GACCTAAACACACACACTCGT-CGAATTGAAAGT--GA-CATT-CCTGAC--ATGATTGACCAAAAGATCCTAGTGATG--TTCGAGTCT-ATGAACTCTTCATTGGAAA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCCGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|1 : TTTGCTGAATAATCTTAAAAAAGCTCTATA-CGATGAG----GTCACTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTACAAGAG-CACCCTCTTAGAGGAGGGGTACATTTGTCGTATAATCACAA-TCATCATCCTACCA-TTTGTATCCTTTCATGA-AT-T-GTCCCTCCTTGGTGTT-T-GGTATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GCGAATCCTTACA-CT-GATGGCCGTCGTCATCGTCAAAACCGCGGCCGTC-TCTCTCCTAACAGAC-GACACTGTACACAACTTTACAAAACAAAACATCGTCGGTGTGGA--TGGTCATAAACGAGGACGTGTTCAGACAACT-CTGAATCAGAATACTATCATCAGGA-TGAACTTTGGTTACCAAACTGT-CACGCACT-CATGAAAAGAA-T-GTGAACTTCT-GAATC-AAACCTTGCTGTGGCCG-AACAG-AAATTTCTG--TATTG-A-A--AAAGAGGTACGTAAGAAT--GAAACAG-AAAATAACG-GCG-GTTG-AAA-AGGAGAA-GTAGAGGTTCAAAGAAGACATCTTTGCCAGAAATGCAAGAGAAATATCGATCACAGAAGTTCTGAAAATAACGGAAGAGTTCCGAAAGAATATTGATGTCGGATCGGAAGACATTTGAGATCAATGTATCACACACTACTGGCCGACATCAAACGGTTGAAGTGC-GT--CTTGTCGGT-ACTTTGGCTGAGACCTAAAACCACACACTCGTGCAAA-TGAAAGTTGAA-CATT-CCTGAC--ATGATTGACCAGAAGAT-TTAGTGATGATTTCGAGTCTAATGAACTGTTCATTGGAAATATTTCAATGCAA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCAGGAGTTTTGTCAACTGTCACTGGTAAATAT-CCTACTAC---ACGTTTATCAGCAATT-TAACTAA
gi|10 : TTCAAAAA--GA-CAT--CTTAACGAATGATTGACCAAA-GATC-TAGTTATG--TTCGA-TCT-ATGAACTCTTCATTGGGAA-ATTTCAATGCAAGGGTTAAT-GATACAGGAAACAA--TTTCAGCTCAAGTTTCGAA-CTCAAGAATTCACATTTCAG-GTTTTGTCAACTGTCACTAGTAAATATCCCTACTACAGTACG-TTACGAGCAATTCTAACTA
gi|11 : gGTTGAATAATCTTTAAAA-----TATT-TGAAGAACAGTGTCACACTGATGTTTTTATCATACCACACATT-TTCGCTCTCTAATCTACAAGAA-CACTCCCTTAGTGGAGGGGAAAAATTAACGTATAATCtta
gi|15 : ACTTGATATTCT-GGTACAAATACTGC-GCTTTT-TTCAAGT-TCATCATAATCCGATTTGCCAGGATGCA-TG-Tnatctgtaatc
gi|16 : catagactagttgcTGAAAGT--GA-CATT-CCTGAC--ATGATTGACCATAAAATTCTAGTGATG--TTCAAATCT-ATGAACTCTTCATTGGAAA-ATTTCAATGgg
gi|2 : TCTACAAGAA-CACTTTCTTAGTGGAGGGGAAAAATTAACGTATAATCATAA-TCATCATCCTAACA-GCTGCATCCTTTCATTA-AT-T-TTCCTTACTTGATGTT-T-GGTATAAATACAGC-------------GG-TCAGTGTAATGCGACTTGCCAACATGGA-TG-TCAC-GGGAATCCTTACA-CT-GCTGGTCGTCGTCATCGTGAAAACCG--GCCGTCCTCTCTCCTAACAGGC-GACAATGTACACAACTCTACAAAACAAGATCTCGTCGGTGTGGA--CGGTCA-AAACTTGGACGTGTTCAGACATTTTCTGAATCAAGAAACTATCATCAGGGGTGAAC-TTGGTAC--AAAATGTCCACGCCCTTGATGAAAGATA-T-GTTGAC-TCT-TAATCAAAACCTTGCTGTGTCCG-AACAGAAAATTTCTG--TACTG-A-A--ACAG-GGTA--GAAGAATTAAAAACTG-AAACCAA-GTGCT-G--A-AAA-AGGAGAG--TA-CAGTTCAAAGA-GACATCTT-G-CAGAAATGCAA-AGAA-TATCA-C-AC-GAA-TTCTGAAAATAAC-AAAGAGTTCCGAAGAAATATTGATGTCGGATCGGAAA-CATTTGAAATGAATGTATCACACAC-ATTGGCCGACATC-AAC-GTTGAGGTGC-GTAACTTGTCGATAACTTT-GCTG-GACCTAAACACACACATTCGT-CGAATTGAAAGT--GATCATTCCCTGAC--CTGATTGACGAAAAGATCCTAGTGATG--TTCGAATCT-ATGAACTCTTCATTGGACA-ATTTCAATGCGA-GGTTAATGGATACAGGAAACAAATTTTCAGCTCAAGTTTCGAACCTCAAGAATTCACATTCTGGAGTTTTGTCAACTGTCACTGGTAAGTAT-CCTACTAC---ACGTTTATCAACAATT-TTCCTAA
gi|3 : taaCATGA-ATCT-GATTGTACTTGATATT-TTGGTACAAATACTGCGCTTTGT-CTCACGT-TAAGCAAGATCTGATTTGCCAGGATGAA-TG-TGGTTGGGTA-CCTAACA-CT-GATGTTGGTCGTCATCATCAGATCGGCGGCTGTC-TCTCTCCTAACAGAC-GACAATGCACACAACTCTACGAAACAAGATCTCGTTGGAGTGGA--TGGTCG-AAACGTGGACGTGTTCAGACAACTACTGAATCAAGAAACTATCATCAGAA-TGAAC-TTGGTCA--AAAATGTCCACACCCT-GATGAAAGACA-T-GTTGAC-CCT-AAAGGAAAATCTCGCTATGGCCG-AACGGAAAATTTCTG--TACTG-ACA--ACGGAAGTC--CAGGAATTAAAACTTG-AAAACCA-A-GT--GTTGAAAA-AGGAGAGTGTA---GTAAAAAGTAGACG-CCTTG-CAGAAATGGAA-CGAAACCTTA-CC-C-AAATTTCTGAAGATCAC-AAAGCGTTCCAAAGGAATAGTGAT-TTTGATCGGAAAGCATTTGAACTGAATGTTTCAGGCG-TACTGTCAGACATTAAA--ATTGAGGTTCGGT-ATTTGTCTATAACCTT-GCTG-GACTTGAACACACATACTCGT-CAAATTGAAAAT--GA-CATT-CCTAAC--ATCATTGACCAAAAGAACCTAGCGATG--TTTGCGTCC-ATGAACTCTTCATTGGACG-ATTTCAATGCGA-CGTTAATGGCCACAGACAGCAAAATTTCAACTAGAGTTTCTGCTCTCGAAAAATCTCATGGCGGAGTTCTGTCt
gi|4 : TTTGCTGAATAATCTTTAAAAAGCTCTATAACGATGAG----GTCACTTTGATGTTATCGCTATATCACACATTGTTAGCTCT-CGTTCTACAAGAAGCACCCTCTTAGAGGAGGGG--TACTTGTCGTATAATCACAATTCATCAT-CTACCATTTTGTATCCTTTCATGACAT-T-GT-CCTCCTTGGTGTT-T-GGTAT-AAT-CAG----ATGTCCTCACGGTTCAGTGT-ATACGAC-TGCC-ACATGCATCGCTCAC-GCGAATCC-TACATCTGGATAGGCGTCGTCTTCG--AAAA---CGGCCGTC-TCTCTCCTAACAGACAGACACTGTACA-AA-TTTAC--AACAAAACATCGTCGGTGTGGATTTGGTCA-AAATGTGAACGTGTTCAGAC-ACTACTG-ATCAAGAAACTAT-ATCAGGA--GAAC-TTGGT-C--AAAATGT-CACGTCCT-GATGGGAGATAGTAGTTGAC-ACTCGAATCAAAACAT--ATGTGGCCGCAACAGGG---TTCTGTTTA-TG-A-AAGACAGAGGTA--CAAG-ATTAAAAACTGAAAAACA----GCATGTTG-AAACAGGAGA--GTA-A-GTTCAAA-AAGACATCT
gi|5 : tGTTTCGAACCTCAAGAATTCACATTCTGGAATTTTGTCAACTGTCACTAGTAAGTAT-CCTACTAC---ATGTTTATCAGCAATT-TAACTAA
gi|6 : ATACCACATATT-TTCGCTCTCTAATCTAGAAGAA-CACTCTCTTAGTTGAGTGGAAAATTTGACGTATAATCGTAA-TCttagggacatacgatgtcgatcactgcacgttatctttgccttcatttttaacaaattcagtgtaggtttgagtttgaacgatagaacaatttgcattcacataaagactgcgataatacatacgaaaataaattcatttttaatatacatcaatctatgaacaacagcgcttcatgctgtggatgcgcttctgtatttccacgttaaaaatttatattcataaaactatttcctcattttcaaggttacgtgaacattactgttgacagcctgaaggaggaactgaaaaactcgcagattgaacagctgaagttatcatctgccgtgacctctctagagatgttccgaacaaatgtgaccaataacaaaagtggtacgtatcttctggtttctaatttta
gi|6 : TCCTAACAGGC-GACAATGTACACAACTCTAC---------------CGGTGTGAA--CGGTCA-AAACAAGGACGTGTTCAGACAACTTCTGAATCAAGAAACTATCATCAGGA-TGAAC-TTGGTAC--AAAATGTCCACGCACT-CATGAAAGACA-T-GTTGAC-TCT-GAATCAAAACCTTGCTGTGGCCG-AACAGAAAATTTCTG--TATTGAA-A--ACAGAGGTA--GAAGAATTGAAAACAG-AAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaacaggcgacaatgtacacaactctaccggtgtgaacggtcaaaacaaggacgtgttcagacaacttctgaatcaagaaactatcatcaggatgaacttggtacaaaatgtccacgcactcatgaaagacatgttgactctgaatcaaaaccttgctgtggccgaacagaaaatttctgtattgaaaacagaggtagaagaattgaaaacagaaaacc
gi|7 : ataccacatattttcgctctctaatctagaagaacactctcttagttgagtggaaaatttgacgtataatcgtaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGCTTAATAATCTTACAAAACCTTT-TA-CAATGAC----GTTATTTTGATGTTATCGCTATACAACACATT-TCAGCTCTCCGTTCTATAAGAG-CACCCTCTTAGAGGAGGGGAAAATTTGTCGTATAATCACAA-TCATCATCCAAGCA-TCTGTATCCTTTCATTA-AT-TCGT-CCTACTTAATGTT-T-GGTATAAATACAGC-CCTTGC-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAC-GGGATTCCTTACA-CT-GATGACCGTCGTCATCGTAAAAACTGCTGCCATC-TCTCTCATAACAGGT-GACAATGTACACAACTCTACAAc
gi|8 : tTTTGCTGAATAATCTTTCAAA-GATCTGAA-TAATAAC----GTAACAGTGATGTTATCGCTGTACAACACATT-TCAGCAATTTAATCTACAAGAA-AACACTCTTAGTGGAGGGGGAAATGTGTTGAATAATC
gi|9 : aattgaaagaaatatctgttttcttcaaaaataaaacatttaatgaaaaacactgacatttcaattttaagtattttatttttcgaaaattcataatctcaagatataattcaaatgtaagtgtaactaagtagcacgccatctgtttgtaacaagatagcgatgtatcgttgcaatatA-TCAGCATCCTAACA-GCTGTATCCTTTCATAA-AT-T-GGCTTTACATGATGTT-T-G-TATAAATACAGC-CCATGT-CTCACGG-TCAGTGTAATACGACTTGCCAACATGCA-CG-TCAA-GGGAATCCTTACA-CT-GATGACCGTCGTCATCGTCAAAACCGCGGCCATC-TCTCTCCTAACAGAC-GACAATTTAAACAACTCTACAAAACAAGATCTCGTCGGTGTGAA--TGGTCA-AAATGTAGACGTGTTCAGACAGCTACTGAATCAAGAAACTATCATCAGAA-TGAAC-CTGGTAA--AAAATGTCC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTCGAAAATTCATAATCTCAAGAGATAATTGAAATGCAAGTATAACTAAGTAGCACCTGGCCTGTTTGTAACAAGATAACGATGTATCATTGCAATATTTTGTTGAATAATCTTTAAAAGATCTGAATAAT
Unaligned ( gi|13 ): ATAATACTTACGAAAATAAATTCATCAGATAATGAACTGCAACACTTCATATTGCTCTTCTCGTTAAAAATTTCTATTCCTAAAATGGTATCTACATTTTCAAGGTTACGTGAACATTACAGT
Unaligned ( gi|14 ): TACATTTATTGTTCTCTTGATAAGACGTTCTATCTTTTTTCAAGATTTCGTAAACACAACAGTGGGCATTCTGAAGACTGAACTGAAGGACTCAAAGATTGAACAGCT
Unaligned ( gi|17 ): ACGGAAGTCCAGGAATTAAAACTTGAAAACCGCGTATTGAAAAATG